data_4MK6 # _entry.id 4MK6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MK6 RCSB RCSB082012 WWPDB D_1000082012 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC106815 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MK6 _pdbx_database_status.recvd_initial_deposition_date 2013-09-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Wu, R.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal Structure of Probable Dihydroxyacetone Kinase Regulator DHSK_reg from Listeria monocytogenes EGD-e' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Wu, R.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 primary 'Midwest Center for Structural Genomics (MCSG)' 5 # _cell.entry_id 4MK6 _cell.length_a 77.039 _cell.length_b 77.039 _cell.length_c 142.027 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MK6 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable Dihydroxyacetone Kinase Regulator DHSK_reg' 22029.234 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)AESLITKKAIAGGL(MSE)ELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADG ITLGNWDKHVLK(MSE)LESIKENADFYKNTVSADASILSFCFSKLTNSLF(MSE)DLFEKIDTNATVNEADRVFYAEFF SYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANS(MSE)YREN ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDK HVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNATVNEADRVFYAEFFSYGCSGVLIKWITRGF KEAPETIANQLFRLAKDTEFLANSMYREN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC106815 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 GLU n 1 7 SER n 1 8 LEU n 1 9 ILE n 1 10 THR n 1 11 LYS n 1 12 LYS n 1 13 ALA n 1 14 ILE n 1 15 ALA n 1 16 GLY n 1 17 GLY n 1 18 LEU n 1 19 MSE n 1 20 GLU n 1 21 LEU n 1 22 CYS n 1 23 GLN n 1 24 HIS n 1 25 LYS n 1 26 ARG n 1 27 PHE n 1 28 GLU n 1 29 LYS n 1 30 ILE n 1 31 SER n 1 32 ILE n 1 33 ALA n 1 34 ASP n 1 35 ILE n 1 36 THR n 1 37 ASN n 1 38 ILE n 1 39 CYS n 1 40 GLY n 1 41 LEU n 1 42 ASN n 1 43 ARG n 1 44 GLN n 1 45 THR n 1 46 PHE n 1 47 TYR n 1 48 TYR n 1 49 HIS n 1 50 PHE n 1 51 THR n 1 52 ASP n 1 53 LYS n 1 54 TYR n 1 55 ASP n 1 56 LEU n 1 57 LEU n 1 58 THR n 1 59 TRP n 1 60 THR n 1 61 TYR n 1 62 GLU n 1 63 ASN n 1 64 ASP n 1 65 PHE n 1 66 PHE n 1 67 HIS n 1 68 CYS n 1 69 LEU n 1 70 ALA n 1 71 ASP n 1 72 GLY n 1 73 ILE n 1 74 THR n 1 75 LEU n 1 76 GLY n 1 77 ASN n 1 78 TRP n 1 79 ASP n 1 80 LYS n 1 81 HIS n 1 82 VAL n 1 83 LEU n 1 84 LYS n 1 85 MSE n 1 86 LEU n 1 87 GLU n 1 88 SER n 1 89 ILE n 1 90 LYS n 1 91 GLU n 1 92 ASN n 1 93 ALA n 1 94 ASP n 1 95 PHE n 1 96 TYR n 1 97 LYS n 1 98 ASN n 1 99 THR n 1 100 VAL n 1 101 SER n 1 102 ALA n 1 103 ASP n 1 104 ALA n 1 105 SER n 1 106 ILE n 1 107 LEU n 1 108 SER n 1 109 PHE n 1 110 CYS n 1 111 PHE n 1 112 SER n 1 113 LYS n 1 114 LEU n 1 115 THR n 1 116 ASN n 1 117 SER n 1 118 LEU n 1 119 PHE n 1 120 MSE n 1 121 ASP n 1 122 LEU n 1 123 PHE n 1 124 GLU n 1 125 LYS n 1 126 ILE n 1 127 ASP n 1 128 THR n 1 129 ASN n 1 130 ALA n 1 131 THR n 1 132 VAL n 1 133 ASN n 1 134 GLU n 1 135 ALA n 1 136 ASP n 1 137 ARG n 1 138 VAL n 1 139 PHE n 1 140 TYR n 1 141 ALA n 1 142 GLU n 1 143 PHE n 1 144 PHE n 1 145 SER n 1 146 TYR n 1 147 GLY n 1 148 CYS n 1 149 SER n 1 150 GLY n 1 151 VAL n 1 152 LEU n 1 153 ILE n 1 154 LYS n 1 155 TRP n 1 156 ILE n 1 157 THR n 1 158 ARG n 1 159 GLY n 1 160 PHE n 1 161 LYS n 1 162 GLU n 1 163 ALA n 1 164 PRO n 1 165 GLU n 1 166 THR n 1 167 ILE n 1 168 ALA n 1 169 ASN n 1 170 GLN n 1 171 LEU n 1 172 PHE n 1 173 ARG n 1 174 LEU n 1 175 ALA n 1 176 LYS n 1 177 ASP n 1 178 THR n 1 179 GLU n 1 180 PHE n 1 181 LEU n 1 182 ALA n 1 183 ASN n 1 184 SER n 1 185 MSE n 1 186 TYR n 1 187 ARG n 1 188 GLU n 1 189 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lmo0480 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain EGD-e _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8Y9P4_LISMO _struct_ref.pdbx_db_accession Q8Y9P4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVL KMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNATVNEADRVFYAEFFSYGCSGVLIKWITRGFKEA PETIANQLFRLAKDTEFLANSMYREN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MK6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8Y9P4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 186 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 186 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MK6 SER A 1 ? UNP Q8Y9P4 ? ? 'EXPRESSION TAG' -2 1 1 4MK6 ASN A 2 ? UNP Q8Y9P4 ? ? 'EXPRESSION TAG' -1 2 1 4MK6 ALA A 3 ? UNP Q8Y9P4 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MK6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.2 M magnesium chloride, 0.1 M HEPES pH 7.5, 15 %(v/v) ethanol, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-08-14 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 4MK6 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.35 _reflns.number_obs 10941 _reflns.number_all 10941 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.B_iso_Wilson_estimate 57.8 _reflns.pdbx_redundancy 8.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.39 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.725 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 516 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MK6 _refine.ls_number_reflns_obs 10929 _refine.ls_number_reflns_all 10929 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.193 _refine.ls_d_res_high 2.350 _refine.ls_percent_reflns_obs 99.50 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all 0.198 _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.79 _refine.ls_number_reflns_R_free 523 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 70.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details mixed _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 23.24 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1524 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1565 _refine_hist.d_res_high 2.350 _refine_hist.d_res_low 30.193 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.003 ? ? 1573 ? 'X-RAY DIFFRACTION' f_angle_d 0.617 ? ? 2119 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 14.391 ? ? 561 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.049 ? ? 231 ? 'X-RAY DIFFRACTION' f_plane_restr 0.002 ? ? 268 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3496 2.5859 2504 0.2527 99.00 0.2777 . . 143 . . 2647 . 'X-RAY DIFFRACTION' . 2.5859 2.9598 2565 0.2262 100.00 0.2572 . . 120 . . 2685 . 'X-RAY DIFFRACTION' . 2.9598 3.7280 2592 0.2081 100.00 0.2394 . . 125 . . 2717 . 'X-RAY DIFFRACTION' . 3.7280 30.1959 2745 0.1784 99.00 0.2161 . . 135 . . 2880 . 'X-RAY DIFFRACTION' # _struct.entry_id 4MK6 _struct.title 'Crystal Structure of Probable Dihydroxyacetone Kinase Regulator DHSK_reg from Listeria monocytogenes EGD-e' _struct.pdbx_descriptor 'Probable Dihydroxyacetone Kinase Regulator DHSK_reg' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MK6 _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text ;Structural Genomics, PSI-Biology, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Alpha-beta-fold, TetR-fold, TRANSCRIPTION REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? CYS A 22 ? SER A 4 CYS A 19 1 ? 16 HELX_P HELX_P2 2 SER A 31 ? GLY A 40 ? SER A 28 GLY A 37 1 ? 10 HELX_P HELX_P3 3 ASN A 42 ? PHE A 50 ? ASN A 39 PHE A 47 1 ? 9 HELX_P HELX_P4 4 ASP A 52 ? ASN A 63 ? ASP A 49 ASN A 60 1 ? 12 HELX_P HELX_P5 5 ASP A 64 ? GLY A 72 ? ASP A 61 GLY A 69 1 ? 9 HELX_P HELX_P6 6 ASN A 77 ? ASN A 92 ? ASN A 74 ASN A 89 1 ? 16 HELX_P HELX_P7 7 ASN A 92 ? ASP A 103 ? ASN A 89 ASP A 100 1 ? 12 HELX_P HELX_P8 8 ALA A 104 ? ASP A 127 ? ALA A 101 ASP A 124 1 ? 24 HELX_P HELX_P9 9 ASN A 133 ? ARG A 158 ? ASN A 130 ARG A 155 1 ? 26 HELX_P HELX_P10 10 ALA A 163 ? ASN A 183 ? ALA A 160 ASN A 180 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ALA 5 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A LEU 18 C ? ? ? 1_555 A MSE 19 N ? ? A LEU 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 19 C ? ? ? 1_555 A GLU 20 N ? ? A MSE 16 A GLU 17 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A LYS 84 C ? ? ? 1_555 A MSE 85 N ? ? A LYS 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 85 C ? ? ? 1_555 A LEU 86 N ? ? A MSE 82 A LEU 83 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? A PHE 119 C ? ? ? 1_555 A MSE 120 N ? ? A PHE 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A MSE 120 C ? ? ? 1_555 A ASP 121 N ? ? A MSE 117 A ASP 118 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A SER 184 C ? ? ? 1_555 A MSE 185 N ? ? A SER 181 A MSE 182 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 185 C ? ? ? 1_555 A TYR 186 N ? ? A MSE 182 A TYR 183 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE EDO A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 6 ? GLU A 3 . ? 1_555 ? 2 AC1 3 THR A 45 ? THR A 42 . ? 1_555 ? 3 AC1 3 TYR A 48 ? TYR A 45 . ? 1_555 ? 4 AC2 1 HOH D . ? HOH A 331 . ? 1_555 ? # _database_PDB_matrix.entry_id 4MK6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MK6 _atom_sites.fract_transf_matrix[1][1] 0.012980 _atom_sites.fract_transf_matrix[1][2] 0.007494 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014989 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007041 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 GLU 6 3 3 GLU GLU A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 LEU 8 5 5 LEU LEU A . n A 1 9 ILE 9 6 6 ILE ILE A . n A 1 10 THR 10 7 7 THR THR A . n A 1 11 LYS 11 8 8 LYS LYS A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 GLY 16 13 13 GLY GLY A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 MSE 19 16 16 MSE MSE A . n A 1 20 GLU 20 17 17 GLU GLU A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 CYS 22 19 19 CYS CYS A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 HIS 24 21 21 HIS HIS A . n A 1 25 LYS 25 22 22 LYS LYS A . n A 1 26 ARG 26 23 23 ARG ARG A . n A 1 27 PHE 27 24 24 PHE PHE A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 LYS 29 26 26 LYS LYS A . n A 1 30 ILE 30 27 27 ILE ILE A . n A 1 31 SER 31 28 28 SER SER A . n A 1 32 ILE 32 29 29 ILE ILE A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 ASP 34 31 31 ASP ASP A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 THR 36 33 33 THR THR A . n A 1 37 ASN 37 34 34 ASN ASN A . n A 1 38 ILE 38 35 35 ILE ILE A . n A 1 39 CYS 39 36 36 CYS CYS A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ASN 42 39 39 ASN ASN A . n A 1 43 ARG 43 40 40 ARG ARG A . n A 1 44 GLN 44 41 41 GLN GLN A . n A 1 45 THR 45 42 42 THR THR A . n A 1 46 PHE 46 43 43 PHE PHE A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 TYR 48 45 45 TYR TYR A . n A 1 49 HIS 49 46 46 HIS HIS A . n A 1 50 PHE 50 47 47 PHE PHE A . n A 1 51 THR 51 48 48 THR THR A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 LYS 53 50 50 LYS LYS A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 ASP 55 52 52 ASP ASP A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 LEU 57 54 54 LEU LEU A . n A 1 58 THR 58 55 55 THR THR A . n A 1 59 TRP 59 56 56 TRP TRP A . n A 1 60 THR 60 57 57 THR THR A . n A 1 61 TYR 61 58 58 TYR TYR A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 ASP 64 61 61 ASP ASP A . n A 1 65 PHE 65 62 62 PHE PHE A . n A 1 66 PHE 66 63 63 PHE PHE A . n A 1 67 HIS 67 64 64 HIS HIS A . n A 1 68 CYS 68 65 65 CYS CYS A . n A 1 69 LEU 69 66 66 LEU LEU A . n A 1 70 ALA 70 67 67 ALA ALA A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 THR 74 71 71 THR THR A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 ASN 77 74 74 ASN ASN A . n A 1 78 TRP 78 75 75 TRP TRP A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 LYS 80 77 77 LYS LYS A . n A 1 81 HIS 81 78 78 HIS HIS A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 LYS 84 81 81 LYS LYS A . n A 1 85 MSE 85 82 82 MSE MSE A . n A 1 86 LEU 86 83 83 LEU LEU A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 ILE 89 86 86 ILE ILE A . n A 1 90 LYS 90 87 87 LYS LYS A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 ASN 92 89 89 ASN ASN A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 ASP 94 91 91 ASP ASP A . n A 1 95 PHE 95 92 92 PHE PHE A . n A 1 96 TYR 96 93 93 TYR TYR A . n A 1 97 LYS 97 94 94 LYS LYS A . n A 1 98 ASN 98 95 95 ASN ASN A . n A 1 99 THR 99 96 96 THR THR A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 SER 101 98 98 SER SER A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 ASP 103 100 100 ASP ASP A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 ILE 106 103 103 ILE ILE A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 CYS 110 107 107 CYS CYS A . n A 1 111 PHE 111 108 108 PHE PHE A . n A 1 112 SER 112 109 109 SER SER A . n A 1 113 LYS 113 110 110 LYS LYS A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 THR 115 112 112 THR THR A . n A 1 116 ASN 116 113 113 ASN ASN A . n A 1 117 SER 117 114 114 SER SER A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 PHE 119 116 116 PHE PHE A . n A 1 120 MSE 120 117 117 MSE MSE A . n A 1 121 ASP 121 118 118 ASP ASP A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 PHE 123 120 120 PHE PHE A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 ILE 126 123 123 ILE ILE A . n A 1 127 ASP 127 124 124 ASP ASP A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 ASN 129 126 126 ASN ASN A . n A 1 130 ALA 130 127 127 ALA ALA A . n A 1 131 THR 131 128 128 THR THR A . n A 1 132 VAL 132 129 129 VAL VAL A . n A 1 133 ASN 133 130 130 ASN ASN A . n A 1 134 GLU 134 131 131 GLU GLU A . n A 1 135 ALA 135 132 132 ALA ALA A . n A 1 136 ASP 136 133 133 ASP ASP A . n A 1 137 ARG 137 134 134 ARG ARG A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 PHE 139 136 136 PHE PHE A . n A 1 140 TYR 140 137 137 TYR TYR A . n A 1 141 ALA 141 138 138 ALA ALA A . n A 1 142 GLU 142 139 139 GLU GLU A . n A 1 143 PHE 143 140 140 PHE PHE A . n A 1 144 PHE 144 141 141 PHE PHE A . n A 1 145 SER 145 142 142 SER SER A . n A 1 146 TYR 146 143 143 TYR TYR A . n A 1 147 GLY 147 144 144 GLY GLY A . n A 1 148 CYS 148 145 145 CYS CYS A . n A 1 149 SER 149 146 146 SER SER A . n A 1 150 GLY 150 147 147 GLY GLY A . n A 1 151 VAL 151 148 148 VAL VAL A . n A 1 152 LEU 152 149 149 LEU LEU A . n A 1 153 ILE 153 150 150 ILE ILE A . n A 1 154 LYS 154 151 151 LYS LYS A . n A 1 155 TRP 155 152 152 TRP TRP A . n A 1 156 ILE 156 153 153 ILE ILE A . n A 1 157 THR 157 154 154 THR THR A . n A 1 158 ARG 158 155 155 ARG ARG A . n A 1 159 GLY 159 156 156 GLY GLY A . n A 1 160 PHE 160 157 157 PHE PHE A . n A 1 161 LYS 161 158 158 LYS LYS A . n A 1 162 GLU 162 159 159 GLU GLU A . n A 1 163 ALA 163 160 160 ALA ALA A . n A 1 164 PRO 164 161 161 PRO PRO A . n A 1 165 GLU 165 162 162 GLU GLU A . n A 1 166 THR 166 163 163 THR THR A . n A 1 167 ILE 167 164 164 ILE ILE A . n A 1 168 ALA 168 165 165 ALA ALA A . n A 1 169 ASN 169 166 166 ASN ASN A . n A 1 170 GLN 170 167 167 GLN GLN A . n A 1 171 LEU 171 168 168 LEU LEU A . n A 1 172 PHE 172 169 169 PHE PHE A . n A 1 173 ARG 173 170 170 ARG ARG A . n A 1 174 LEU 174 171 171 LEU LEU A . n A 1 175 ALA 175 172 172 ALA ALA A . n A 1 176 LYS 176 173 173 LYS LYS A . n A 1 177 ASP 177 174 174 ASP ASP A . n A 1 178 THR 178 175 175 THR THR A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 PHE 180 177 177 PHE PHE A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 ASN 183 180 180 ASN ASN A . n A 1 184 SER 184 181 181 SER SER A . n A 1 185 MSE 185 182 182 MSE MSE A . n A 1 186 TYR 186 183 183 TYR TYR A . n A 1 187 ARG 187 184 184 ARG ARG A . n A 1 188 GLU 188 185 185 GLU GLU A . n A 1 189 ASN 189 186 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 19 A MSE 16 ? MET SELENOMETHIONINE 3 A MSE 85 A MSE 82 ? MET SELENOMETHIONINE 4 A MSE 120 A MSE 117 ? MET SELENOMETHIONINE 5 A MSE 185 A MSE 182 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3240 ? 1 MORE -2 ? 1 'SSA (A^2)' 18450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 23.6711666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 333 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-09-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 5.1053 19.7322 3.5626 0.4886 0.4359 0.6617 0.0060 -0.0897 0.1943 5.9824 5.3714 8.5199 -1.9419 2.2485 -2.2669 0.3353 -0.5087 -1.0622 -0.3818 0.1419 0.9336 0.9426 -0.3351 -0.5034 'X-RAY DIFFRACTION' 2 ? refined 23.0964 33.7259 1.7717 0.7798 0.9222 1.3076 -0.0105 -0.0743 0.4058 4.3164 5.6513 2.8271 4.9145 -3.1738 -3.4388 -0.1809 0.6532 -1.0015 0.6321 1.1707 1.4316 0.4009 -1.2622 -1.0214 'X-RAY DIFFRACTION' 3 ? refined 32.1109 27.6116 8.3506 0.4049 0.3034 0.2518 0.0546 0.0090 0.0461 6.1452 4.8581 3.2972 0.7943 0.2054 0.0830 0.1223 0.0001 0.2567 -0.0704 0.0835 -0.1290 -0.3891 0.0116 -0.2374 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid -2 through 59 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 60 through 74 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 75 through 185 ) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 phasing . ? 3 SHELXS phasing . ? 4 MLPHARE phasing . ? 5 DM 'model building' . ? 6 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 DM phasing . ? 10 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 49 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 313 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 89 ? ? -108.54 43.11 2 1 ASP A 100 ? ? -163.22 87.51 3 1 SER A 181 ? ? -145.63 32.45 4 1 TYR A 183 ? ? -98.76 56.60 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ASN _pdbx_unobs_or_zero_occ_residues.auth_seq_id 186 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ASN _pdbx_unobs_or_zero_occ_residues.label_seq_id 189 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 201 EDO EDO A . C 2 EDO 1 202 202 EDO EDO A . D 3 HOH 1 301 1 HOH HOH A . D 3 HOH 2 302 2 HOH HOH A . D 3 HOH 3 303 3 HOH HOH A . D 3 HOH 4 304 4 HOH HOH A . D 3 HOH 5 305 5 HOH HOH A . D 3 HOH 6 306 6 HOH HOH A . D 3 HOH 7 307 7 HOH HOH A . D 3 HOH 8 308 8 HOH HOH A . D 3 HOH 9 309 9 HOH HOH A . D 3 HOH 10 310 10 HOH HOH A . D 3 HOH 11 311 11 HOH HOH A . D 3 HOH 12 312 12 HOH HOH A . D 3 HOH 13 313 13 HOH HOH A . D 3 HOH 14 314 14 HOH HOH A . D 3 HOH 15 315 15 HOH HOH A . D 3 HOH 16 316 16 HOH HOH A . D 3 HOH 17 317 17 HOH HOH A . D 3 HOH 18 318 18 HOH HOH A . D 3 HOH 19 319 19 HOH HOH A . D 3 HOH 20 320 20 HOH HOH A . D 3 HOH 21 321 21 HOH HOH A . D 3 HOH 22 322 22 HOH HOH A . D 3 HOH 23 323 23 HOH HOH A . D 3 HOH 24 324 24 HOH HOH A . D 3 HOH 25 325 25 HOH HOH A . D 3 HOH 26 326 26 HOH HOH A . D 3 HOH 27 327 27 HOH HOH A . D 3 HOH 28 328 28 HOH HOH A . D 3 HOH 29 329 29 HOH HOH A . D 3 HOH 30 330 30 HOH HOH A . D 3 HOH 31 331 31 HOH HOH A . D 3 HOH 32 332 32 HOH HOH A . D 3 HOH 33 333 33 HOH HOH A . #