HEADER TRANSFERASE 16-SEP-13 4MQB TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS AUREUS IN TITLE 2 COMPLEX WITH 2-(N-MORPHOLINO)ETHANESULFONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: TMK, SAV0482; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB KEYWDS 3 INHIBITORS, MTBI, THYMIDYLATE KINASE, TRANSFERASE, STRUCTURES OF MTB KEYWDS 4 PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,R.JEDRZEJCZAK, AUTHOR 2 G.BABNIGG,E.RUBIN,J.SACCHETTINI,A.JOACHIMIAK,W.F.ANDERSON,MIDWEST AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (MCSG),STRUCTURES OF MTB PROTEINS AUTHOR 4 CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS (MTBI) REVDAT 4 06-DEC-23 4MQB 1 REMARK REVDAT 3 20-SEP-23 4MQB 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4MQB 1 REMARK REVDAT 1 23-OCT-13 4MQB 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA, JRNL AUTH 2 R.JEDRZEJCZAK,G.BABNIGG,E.RUBIN,J.SACCHETTINI,A.JOACHIMIAK, JRNL AUTH 3 W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS JRNL TITL 2 AUREUS IN COMPLEX WITH 2-(N-MORPHOLINO)ETHANESULFONIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3443 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3325 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4654 ; 1.926 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7657 ; 0.980 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 3.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;31.720 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;10.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3924 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 780 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 3.324 ; 1.471 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1679 ; 3.294 ;17.460 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2114 ; 3.901 ; 2.218 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2120 ; 3.927 ; 3.360 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1763 ; 8.774 ; 2.259 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1769 ; 8.536 ; 2.292 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2548 ; 9.361 ; 3.154 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4149 ; 7.568 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4150 ; 7.567 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3419 ; 7.220 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3357 ;21.358 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4568 -5.5907 16.0316 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0107 REMARK 3 T33: 0.0388 T12: -0.0088 REMARK 3 T13: -0.0081 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.9200 L22: 0.9946 REMARK 3 L33: 0.9316 L12: 0.6466 REMARK 3 L13: 0.0800 L23: 0.6655 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.0719 S13: 0.0073 REMARK 3 S21: -0.0309 S22: 0.0367 S23: 0.0752 REMARK 3 S31: -0.0055 S32: 0.0021 S33: 0.0006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5400 6.9283 24.9801 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0290 REMARK 3 T33: 0.0601 T12: -0.0047 REMARK 3 T13: -0.0187 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.5013 L22: 2.4461 REMARK 3 L33: 0.9836 L12: -0.3356 REMARK 3 L13: -0.4775 L23: 0.9710 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.0363 S13: -0.0456 REMARK 3 S21: -0.1383 S22: -0.0094 S23: 0.2733 REMARK 3 S31: -0.0476 S32: -0.0341 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5961 4.9564 29.4889 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: 0.0306 REMARK 3 T33: 0.0088 T12: -0.0016 REMARK 3 T13: -0.0075 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.8140 L22: 1.2130 REMARK 3 L33: 0.5320 L12: -0.2748 REMARK 3 L13: -0.3735 L23: 0.4843 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.0887 S13: 0.0142 REMARK 3 S21: -0.0202 S22: 0.0268 S23: 0.0129 REMARK 3 S31: 0.0260 S32: 0.0490 S33: 0.0215 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3547 4.3757 18.6133 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0215 REMARK 3 T33: 0.0075 T12: -0.0026 REMARK 3 T13: 0.0006 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.7819 L22: 0.5975 REMARK 3 L33: 0.7598 L12: 0.1687 REMARK 3 L13: -0.0424 L23: -0.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 0.0024 S13: -0.0115 REMARK 3 S21: -0.0392 S22: 0.0320 S23: -0.0545 REMARK 3 S31: -0.0072 S32: 0.0187 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2611 26.1058 -0.1351 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0121 REMARK 3 T33: 0.0222 T12: 0.0020 REMARK 3 T13: -0.0178 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.8030 L22: 6.8511 REMARK 3 L33: 4.5283 L12: 2.3128 REMARK 3 L13: -0.3013 L23: -1.5603 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.0687 S13: 0.0030 REMARK 3 S21: 0.1288 S22: -0.0783 S23: -0.1365 REMARK 3 S31: -0.1026 S32: 0.0890 S33: 0.0958 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5063 21.0494 -9.8007 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.0080 REMARK 3 T33: 0.0374 T12: 0.0025 REMARK 3 T13: -0.0147 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.4445 L22: 0.6811 REMARK 3 L33: 0.2478 L12: -0.1722 REMARK 3 L13: -0.2239 L23: 0.1522 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: 0.0370 S13: -0.0357 REMARK 3 S21: -0.0216 S22: -0.0396 S23: 0.0136 REMARK 3 S31: -0.0469 S32: -0.0342 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 84 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7299 15.6437 -1.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.0243 T22: 0.0124 REMARK 3 T33: 0.0232 T12: 0.0060 REMARK 3 T13: -0.0072 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.8574 L22: 0.0746 REMARK 3 L33: 0.8413 L12: -0.0077 REMARK 3 L13: -0.3389 L23: 0.2259 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: -0.0552 S13: -0.0435 REMARK 3 S21: 0.0232 S22: 0.0024 S23: 0.0119 REMARK 3 S31: 0.0961 S32: 0.0468 S33: 0.0585 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7052 8.0455 3.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0343 REMARK 3 T33: 0.0282 T12: -0.0030 REMARK 3 T13: 0.0355 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 5.5528 L22: 2.5281 REMARK 3 L33: 1.1974 L12: 2.6706 REMARK 3 L13: 0.4083 L23: 0.7143 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: -0.0027 S13: -0.2296 REMARK 3 S21: -0.0701 S22: 0.0320 S23: -0.1230 REMARK 3 S31: 0.2087 S32: -0.0334 S33: 0.1026 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 178 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3789 26.7567 9.7837 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.0358 REMARK 3 T33: 0.0292 T12: -0.0042 REMARK 3 T13: 0.0001 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.9417 L22: 1.6392 REMARK 3 L33: 1.8407 L12: 1.0478 REMARK 3 L13: -0.8698 L23: -0.4549 REMARK 3 S TENSOR REMARK 3 S11: 0.0950 S12: -0.2038 S13: 0.2033 REMARK 3 S21: 0.1679 S22: -0.0213 S23: 0.1190 REMARK 3 S31: -0.1624 S32: 0.0270 S33: -0.0737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4F4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M MMES BUFFER, 20% REMARK 280 PEG6000, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.22850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -9.99205 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 48.50552 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ASN A 173 REMARK 465 GLU A 174 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ILE B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 52 CD1 CD2 REMARK 470 ILE A 94 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 77 -56.32 -128.96 REMARK 500 ARG A 92 145.77 91.67 REMARK 500 TYR A 93 -146.69 -160.42 REMARK 500 TYR A 93 -144.02 -160.42 REMARK 500 TYR A 103 -62.97 -90.05 REMARK 500 LYS B 77 -56.42 -124.26 REMARK 500 ARG B 92 149.23 -175.55 REMARK 500 TYR B 93 -145.40 -156.82 REMARK 500 TYR B 103 -62.15 -93.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 302 REMARK 610 PG4 B 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EAQ RELATED DB: PDB REMARK 900 RELATED ID: 4F4I RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC105704 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4DWJ RELATED DB: PDB DBREF 4MQB A 1 205 UNP P65248 KTHY_STAAM 1 205 DBREF 4MQB B 1 205 UNP P65248 KTHY_STAAM 1 205 SEQADV 4MQB SER A -2 UNP P65248 EXPRESSION TAG SEQADV 4MQB ASN A -1 UNP P65248 EXPRESSION TAG SEQADV 4MQB ALA A 0 UNP P65248 EXPRESSION TAG SEQADV 4MQB SER B -2 UNP P65248 EXPRESSION TAG SEQADV 4MQB ASN B -1 UNP P65248 EXPRESSION TAG SEQADV 4MQB ALA B 0 UNP P65248 EXPRESSION TAG SEQRES 1 A 208 SER ASN ALA MSE SER ALA PHE ILE THR PHE GLU GLY PRO SEQRES 2 A 208 GLU GLY SER GLY LYS THR THR VAL ILE ASN GLU VAL TYR SEQRES 3 A 208 HIS ARG LEU VAL LYS ASP TYR ASP VAL ILE MSE THR ARG SEQRES 4 A 208 GLU PRO GLY GLY VAL PRO THR GLY GLU GLU ILE ARG LYS SEQRES 5 A 208 ILE VAL LEU GLU GLY ASN ASP MSE ASP ILE ARG THR GLU SEQRES 6 A 208 ALA MSE LEU PHE ALA ALA SER ARG ARG GLU HIS LEU VAL SEQRES 7 A 208 LEU LYS VAL ILE PRO ALA LEU LYS GLU GLY LYS VAL VAL SEQRES 8 A 208 LEU CYS ASP ARG TYR ILE ASP SER SER LEU ALA TYR GLN SEQRES 9 A 208 GLY TYR ALA ARG GLY ILE GLY VAL GLU GLU VAL ARG ALA SEQRES 10 A 208 LEU ASN GLU PHE ALA ILE ASN GLY LEU TYR PRO ASP LEU SEQRES 11 A 208 THR ILE TYR LEU ASN VAL SER ALA GLU VAL GLY ARG GLU SEQRES 12 A 208 ARG ILE ILE LYS ASN SER ARG ASP GLN ASN ARG LEU ASP SEQRES 13 A 208 GLN GLU ASP LEU LYS PHE HIS GLU LYS VAL ILE GLU GLY SEQRES 14 A 208 TYR GLN GLU ILE ILE HIS ASN GLU SER GLN ARG PHE LYS SEQRES 15 A 208 SER VAL ASN ALA ASP GLN PRO LEU GLU ASN VAL VAL GLU SEQRES 16 A 208 ASP THR TYR GLN THR ILE ILE LYS TYR LEU GLU LYS ILE SEQRES 1 B 208 SER ASN ALA MSE SER ALA PHE ILE THR PHE GLU GLY PRO SEQRES 2 B 208 GLU GLY SER GLY LYS THR THR VAL ILE ASN GLU VAL TYR SEQRES 3 B 208 HIS ARG LEU VAL LYS ASP TYR ASP VAL ILE MSE THR ARG SEQRES 4 B 208 GLU PRO GLY GLY VAL PRO THR GLY GLU GLU ILE ARG LYS SEQRES 5 B 208 ILE VAL LEU GLU GLY ASN ASP MSE ASP ILE ARG THR GLU SEQRES 6 B 208 ALA MSE LEU PHE ALA ALA SER ARG ARG GLU HIS LEU VAL SEQRES 7 B 208 LEU LYS VAL ILE PRO ALA LEU LYS GLU GLY LYS VAL VAL SEQRES 8 B 208 LEU CYS ASP ARG TYR ILE ASP SER SER LEU ALA TYR GLN SEQRES 9 B 208 GLY TYR ALA ARG GLY ILE GLY VAL GLU GLU VAL ARG ALA SEQRES 10 B 208 LEU ASN GLU PHE ALA ILE ASN GLY LEU TYR PRO ASP LEU SEQRES 11 B 208 THR ILE TYR LEU ASN VAL SER ALA GLU VAL GLY ARG GLU SEQRES 12 B 208 ARG ILE ILE LYS ASN SER ARG ASP GLN ASN ARG LEU ASP SEQRES 13 B 208 GLN GLU ASP LEU LYS PHE HIS GLU LYS VAL ILE GLU GLY SEQRES 14 B 208 TYR GLN GLU ILE ILE HIS ASN GLU SER GLN ARG PHE LYS SEQRES 15 B 208 SER VAL ASN ALA ASP GLN PRO LEU GLU ASN VAL VAL GLU SEQRES 16 B 208 ASP THR TYR GLN THR ILE ILE LYS TYR LEU GLU LYS ILE MODRES 4MQB MSE A 1 MET SELENOMETHIONINE MODRES 4MQB MSE A 34 MET SELENOMETHIONINE MODRES 4MQB MSE A 57 MET SELENOMETHIONINE MODRES 4MQB MSE A 64 MET SELENOMETHIONINE MODRES 4MQB MSE B 34 MET SELENOMETHIONINE MODRES 4MQB MSE B 57 MET SELENOMETHIONINE MODRES 4MQB MSE B 64 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 8 HET MSE A 57 8 HET MSE A 64 8 HET MSE B 34 16 HET MSE B 57 8 HET MSE B 64 8 HET MES A 301 12 HET PG4 A 302 7 HET PG4 B 301 7 HETNAM MSE SELENOMETHIONINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 MES C6 H13 N O4 S FORMUL 4 PG4 2(C8 H18 O5) FORMUL 6 HOH *329(H2 O) HELIX 1 1 GLY A 14 VAL A 27 1 14 HELIX 2 2 VAL A 41 GLY A 54 1 14 HELIX 3 3 ASP A 58 LYS A 77 1 20 HELIX 4 4 LYS A 77 GLU A 84 1 8 HELIX 5 5 TYR A 93 GLN A 101 1 9 HELIX 6 6 GLY A 108 ASN A 121 1 14 HELIX 7 7 SER A 134 SER A 146 1 13 HELIX 8 8 ASP A 153 HIS A 172 1 20 HELIX 9 9 PRO A 186 LYS A 204 1 19 HELIX 10 10 GLY B 14 LYS B 28 1 15 HELIX 11 11 VAL B 41 GLU B 53 1 13 HELIX 12 12 ASP B 58 LYS B 77 1 20 HELIX 13 13 LYS B 77 GLU B 84 1 8 HELIX 14 14 TYR B 93 GLN B 101 1 9 HELIX 15 15 GLY B 108 ASN B 121 1 14 HELIX 16 16 SER B 134 SER B 146 1 13 HELIX 17 17 ASP B 153 HIS B 172 1 20 HELIX 18 18 PRO B 186 LYS B 204 1 19 SHEET 1 A 5 VAL A 32 THR A 35 0 SHEET 2 A 5 VAL A 87 ASP A 91 1 O LEU A 89 N ILE A 33 SHEET 3 A 5 ALA A 3 GLU A 8 1 N ILE A 5 O VAL A 88 SHEET 4 A 5 LEU A 127 ASN A 132 1 O LEU A 131 N GLU A 8 SHEET 5 A 5 PHE A 178 ASN A 182 1 O LYS A 179 N THR A 128 SHEET 1 B 5 VAL B 32 THR B 35 0 SHEET 2 B 5 VAL B 87 CYS B 90 1 O LEU B 89 N ILE B 33 SHEET 3 B 5 ALA B 3 GLU B 8 1 N ALA B 3 O VAL B 88 SHEET 4 B 5 LEU B 127 ASN B 132 1 O ILE B 129 N THR B 6 SHEET 5 B 5 PHE B 178 ASN B 182 1 O LYS B 179 N TYR B 130 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C ILE A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N THR A 35 1555 1555 1.34 LINK C ASP A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N ASP A 58 1555 1555 1.34 LINK C ALA A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N LEU A 65 1555 1555 1.34 LINK C ILE B 33 N AMSE B 34 1555 1555 1.33 LINK C ILE B 33 N BMSE B 34 1555 1555 1.32 LINK C AMSE B 34 N THR B 35 1555 1555 1.32 LINK C BMSE B 34 N THR B 35 1555 1555 1.33 LINK C ASP B 56 N MSE B 57 1555 1555 1.32 LINK C MSE B 57 N ASP B 58 1555 1555 1.33 LINK C ALA B 63 N MSE B 64 1555 1555 1.34 LINK C MSE B 64 N LEU B 65 1555 1555 1.34 CISPEP 1 GLU A 37 PRO A 38 0 -0.62 CISPEP 2 GLU B 37 PRO B 38 0 0.40 SITE 1 AC1 8 GLU A 37 ARG A 48 PHE A 66 ARG A 70 SITE 2 AC1 8 SER A 96 SER A 97 HOH A 403 HOH A 518 SITE 1 AC2 7 PRO A 10 GLY A 12 GLY A 14 LYS A 15 SITE 2 AC2 7 THR A 16 THR A 17 ARG A 92 SITE 1 AC3 11 GLY B 14 LYS B 15 THR B 16 THR B 17 SITE 2 AC3 11 ARG B 141 LYS B 144 ASN B 145 LEU B 187 SITE 3 AC3 11 HOH B 405 HOH B 462 HOH B 544 CRYST1 46.134 90.457 49.524 90.00 101.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021676 0.000000 0.004465 0.00000 SCALE2 0.000000 0.011055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020616 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.170252 -0.216923 0.961228 15.65495 1 MTRIX2 2 -0.221788 -0.942005 -0.251868 19.04752 1 MTRIX3 2 0.960117 -0.256070 0.112267 30.60565 1 HETATM 1 N MSE A 1 7.870 -18.919 25.003 1.00106.34 N ANISOU 1 N MSE A 1 20436 2815 17153 1921 1795 4129 N HETATM 2 CA MSE A 1 6.895 -18.215 25.878 1.00127.56 C ANISOU 2 CA MSE A 1 20710 3633 24123 4395 886 3869 C HETATM 3 C MSE A 1 6.773 -16.765 25.451 1.00 34.15 C ANISOU 3 C MSE A 1 4271 2910 5792 1310 -125 822 C HETATM 4 O MSE A 1 7.358 -16.346 24.457 1.00 38.40 O ANISOU 4 O MSE A 1 4815 2665 7110 290 396 -171 O HETATM 5 CB MSE A 1 7.320 -18.278 27.331 1.00134.71 C ANISOU 5 CB MSE A 1 19701 6502 24980 4011 284 2743 C HETATM 6 CG MSE A 1 6.097 -18.129 28.216 1.00119.74 C ANISOU 6 CG MSE A 1 17747 5891 21855 -6702 523 -922 C HETATM 7 SE MSE A 1 6.362 -19.241 29.796 1.00194.42 SE ANISOU 7 SE MSE A 1 16067 32839 24963 -1148 -5399 4188 SE HETATM 8 CE MSE A 1 6.413 -21.063 29.048 1.00157.25 C ANISOU 8 CE MSE A 1 16356 25624 17765 -1968 -7294 18776 C