data_4MSR # _entry.id 4MSR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MSR pdb_00004msr 10.2210/pdb4msr/pdb NDB NA2739 ? ? RCSB RCSB082319 ? ? WWPDB D_1000082319 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-12 2 'Structure model' 1 1 2014-03-19 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' pdbx_validate_polymer_linkage 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' pdbx_struct_special_symmetry 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_conn_type 10 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.conn_type_id' 23 4 'Structure model' '_struct_conn.id' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 27 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 42 4 'Structure model' '_struct_conn_type.id' 43 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MSR _pdbx_database_status.recvd_initial_deposition_date 2013-09-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4MS9 . unspecified PDB 4MSB . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, J.' 1 'Li, L.' 2 'Engelhart, A.E.' 3 'Gan, J.' 4 'Wang, J.' 5 'Szostak, J.W.' 6 # _citation.id primary _citation.title ;Structural insights into the effects of 2'-5' linkages on the RNA duplex. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 111 _citation.page_first 3050 _citation.page_last 3055 _citation.year 2014 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24516151 _citation.pdbx_database_id_DOI 10.1073/pnas.1317799111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sheng, J.' 1 ? primary 'Li, L.' 2 ? primary 'Engelhart, A.E.' 3 ? primary 'Gan, J.' 4 ? primary 'Wang, J.' 5 ? primary 'Szostak, J.W.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA 10mer duplex with six 2'-5'-linkages ; 3206.980 2 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 5 ? ? ? ? 3 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCGGCGCCGG _entity_poly.pdbx_seq_one_letter_code_can CCGGCGCCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 G n 1 5 C n 1 6 G n 1 7 C n 1 8 C n 1 9 G n 1 10 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized and purified' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 C 2 2 2 C C B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 C 7 7 7 C C B . n B 1 8 C 8 8 8 C C B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR 1 101 1 SR SR A . D 2 SR 1 102 4 SR SR A . E 2 SR 1 101 2 SR SR B . F 2 SR 1 102 3 SR SR B . G 2 SR 1 103 5 SR SR B . H 3 HOH 1 201 3 HOH HOH A . H 3 HOH 2 202 6 HOH HOH A . H 3 HOH 3 203 7 HOH HOH A . H 3 HOH 4 204 8 HOH HOH A . H 3 HOH 5 205 12 HOH HOH A . H 3 HOH 6 206 14 HOH HOH A . H 3 HOH 7 207 15 HOH HOH A . H 3 HOH 8 208 16 HOH HOH A . H 3 HOH 9 209 17 HOH HOH A . H 3 HOH 10 210 22 HOH HOH A . H 3 HOH 11 211 23 HOH HOH A . H 3 HOH 12 212 24 HOH HOH A . H 3 HOH 13 213 25 HOH HOH A . H 3 HOH 14 214 27 HOH HOH A . H 3 HOH 15 215 28 HOH HOH A . H 3 HOH 16 216 29 HOH HOH A . H 3 HOH 17 217 30 HOH HOH A . H 3 HOH 18 218 35 HOH HOH A . H 3 HOH 19 219 37 HOH HOH A . H 3 HOH 20 220 40 HOH HOH A . H 3 HOH 21 221 42 HOH HOH A . H 3 HOH 22 222 44 HOH HOH A . H 3 HOH 23 223 46 HOH HOH A . H 3 HOH 24 224 47 HOH HOH A . H 3 HOH 25 225 48 HOH HOH A . H 3 HOH 26 226 49 HOH HOH A . H 3 HOH 27 227 50 HOH HOH A . H 3 HOH 28 228 58 HOH HOH A . H 3 HOH 29 229 63 HOH HOH A . H 3 HOH 30 230 64 HOH HOH A . H 3 HOH 31 231 66 HOH HOH A . H 3 HOH 32 232 70 HOH HOH A . H 3 HOH 33 233 72 HOH HOH A . H 3 HOH 34 234 73 HOH HOH A . H 3 HOH 35 235 76 HOH HOH A . H 3 HOH 36 236 77 HOH HOH A . H 3 HOH 37 237 79 HOH HOH A . H 3 HOH 38 238 82 HOH HOH A . H 3 HOH 39 239 83 HOH HOH A . H 3 HOH 40 240 86 HOH HOH A . H 3 HOH 41 241 88 HOH HOH A . H 3 HOH 42 242 89 HOH HOH A . H 3 HOH 43 243 90 HOH HOH A . H 3 HOH 44 244 91 HOH HOH A . H 3 HOH 45 245 101 HOH HOH A . H 3 HOH 46 246 103 HOH HOH A . H 3 HOH 47 247 104 HOH HOH A . H 3 HOH 48 248 106 HOH HOH A . H 3 HOH 49 249 107 HOH HOH A . H 3 HOH 50 250 108 HOH HOH A . H 3 HOH 51 251 109 HOH HOH A . H 3 HOH 52 252 110 HOH HOH A . H 3 HOH 53 253 111 HOH HOH A . H 3 HOH 54 254 112 HOH HOH A . H 3 HOH 55 255 118 HOH HOH A . H 3 HOH 56 256 119 HOH HOH A . H 3 HOH 57 257 120 HOH HOH A . H 3 HOH 58 258 122 HOH HOH A . H 3 HOH 59 259 123 HOH HOH A . H 3 HOH 60 260 124 HOH HOH A . I 3 HOH 1 201 1 HOH HOH B . I 3 HOH 2 202 2 HOH HOH B . I 3 HOH 3 203 4 HOH HOH B . I 3 HOH 4 204 5 HOH HOH B . I 3 HOH 5 205 9 HOH HOH B . I 3 HOH 6 206 10 HOH HOH B . I 3 HOH 7 207 13 HOH HOH B . I 3 HOH 8 208 18 HOH HOH B . I 3 HOH 9 209 19 HOH HOH B . I 3 HOH 10 210 20 HOH HOH B . I 3 HOH 11 211 21 HOH HOH B . I 3 HOH 12 212 26 HOH HOH B . I 3 HOH 13 213 31 HOH HOH B . I 3 HOH 14 214 32 HOH HOH B . I 3 HOH 15 215 33 HOH HOH B . I 3 HOH 16 216 34 HOH HOH B . I 3 HOH 17 217 36 HOH HOH B . I 3 HOH 18 218 38 HOH HOH B . I 3 HOH 19 219 39 HOH HOH B . I 3 HOH 20 220 41 HOH HOH B . I 3 HOH 21 221 43 HOH HOH B . I 3 HOH 22 222 45 HOH HOH B . I 3 HOH 23 223 51 HOH HOH B . I 3 HOH 24 224 52 HOH HOH B . I 3 HOH 25 225 53 HOH HOH B . I 3 HOH 26 226 54 HOH HOH B . I 3 HOH 27 227 55 HOH HOH B . I 3 HOH 28 228 56 HOH HOH B . I 3 HOH 29 229 57 HOH HOH B . I 3 HOH 30 230 60 HOH HOH B . I 3 HOH 31 231 61 HOH HOH B . I 3 HOH 32 232 62 HOH HOH B . I 3 HOH 33 233 65 HOH HOH B . I 3 HOH 34 234 67 HOH HOH B . I 3 HOH 35 235 68 HOH HOH B . I 3 HOH 36 236 69 HOH HOH B . I 3 HOH 37 237 71 HOH HOH B . I 3 HOH 38 238 74 HOH HOH B . I 3 HOH 39 239 75 HOH HOH B . I 3 HOH 40 240 78 HOH HOH B . I 3 HOH 41 241 80 HOH HOH B . I 3 HOH 42 242 81 HOH HOH B . I 3 HOH 43 243 84 HOH HOH B . I 3 HOH 44 244 85 HOH HOH B . I 3 HOH 45 245 87 HOH HOH B . I 3 HOH 46 246 92 HOH HOH B . I 3 HOH 47 247 93 HOH HOH B . I 3 HOH 48 248 94 HOH HOH B . I 3 HOH 49 249 96 HOH HOH B . I 3 HOH 50 250 97 HOH HOH B . I 3 HOH 51 251 98 HOH HOH B . I 3 HOH 52 252 99 HOH HOH B . I 3 HOH 53 253 100 HOH HOH B . I 3 HOH 54 254 102 HOH HOH B . I 3 HOH 55 255 105 HOH HOH B . I 3 HOH 56 256 113 HOH HOH B . I 3 HOH 57 257 114 HOH HOH B . I 3 HOH 58 258 115 HOH HOH B . I 3 HOH 59 259 116 HOH HOH B . I 3 HOH 60 260 117 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4MSR _cell.length_a 24.219 _cell.length_b 45.504 _cell.length_c 81.623 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MSR _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4MSR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.75 _exptl_crystal.density_percent_sol 29.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;10% MPD (2-methyl-2,4-pentanediol), 40 mM sodium cacodylate pH 6.0, 12 mM spermine tetrahydrochloride, and 80 mM strontium (II) chloride , VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2012-07-06 ? 2 CCD 'ADSC QUANTUM 315r' ? ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ALS 8.2.1 ? 1.0 2 SYNCHROTRON 'ALS BEAMLINE 8.2.2' ALS 8.2.2 ? 1.0 # _reflns.entry_id 4MSR _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.2 _reflns.number_obs 13957 _reflns.number_all 14584 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.24 _reflns_shell.percent_possible_all 74.9 _reflns_shell.Rmerge_I_obs 0.26 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 18 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MSR _refine.ls_number_reflns_obs 13223 _refine.ls_number_reflns_all 13803 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.75 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 95.80 _refine.ls_R_factor_obs 0.17775 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17580 _refine.ls_R_factor_R_free 0.21733 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 704 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 15.412 _refine.aniso_B[1][1] -0.10 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] 0.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.052 _refine.pdbx_overall_ESU_R_Free 0.058 _refine.overall_SU_ML 0.035 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.778 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4MSR _refine_analyze.Luzzati_coordinate_error_obs 0.052 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.058 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 424 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 549 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 22.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.017 0.011 ? 548 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.996 1.444 ? 858 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.098 0.200 ? 92 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.035 0.020 ? 243 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.200 _refine_ls_shell.d_res_low 1.231 _refine_ls_shell.number_reflns_R_work 643 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 68.20 _refine_ls_shell.R_factor_R_free 0.380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4MSR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4MSR _struct.title ;RNA 10mer duplex with six 2'-5'-linkages ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MSR _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;2'-5'-linkage, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4MSR _struct_ref.pdbx_db_accession 4MSR _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CCGGCGCCGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4MSR A 1 ? 10 ? 4MSR 1 ? 10 ? 1 10 2 1 4MSR B 1 ? 10 ? 4MSR 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1880 ? 1 MORE -99 ? 1 'SSA (A^2)' 3680 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A G 3 "O2'" A ? ? 1_555 A G 4 P A ? A G 3 A G 4 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale2 covale one ? A G 3 "O2'" B ? ? 1_555 A G 4 P B ? A G 3 A G 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale one ? A C 5 "O2'" ? ? ? 1_555 A G 6 P ? ? A C 5 A G 6 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale4 covale one ? A C 7 "O2'" ? ? ? 1_555 A C 8 P ? ? A C 7 A C 8 1_555 ? ? ? ? ? ? ? 1.563 ? ? covale5 covale one ? B G 3 "O2'" ? ? ? 1_555 B G 4 P ? ? B G 3 B G 4 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale6 covale one ? B C 5 "O2'" ? ? ? 1_555 B G 6 P ? ? B C 5 B G 6 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale7 covale one ? B C 7 "O2'" ? ? ? 1_555 B C 8 P A ? B C 7 B C 8 1_555 ? ? ? ? ? ? ? 1.640 ? ? covale8 covale one ? B C 7 "O2'" ? ? ? 1_555 B C 8 P B ? B C 7 B C 8 1_555 ? ? ? ? ? ? ? 1.590 ? ? metalc1 metalc ? ? A G 6 OP2 ? ? ? 1_555 D SR . SR ? ? A G 6 A SR 102 1_555 ? ? ? ? ? ? ? 2.626 ? ? metalc2 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.615 ? ? metalc3 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc4 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc5 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 A HOH 216 1_555 ? ? ? ? ? ? ? 2.677 ? ? metalc6 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 A HOH 244 1_555 ? ? ? ? ? ? ? 2.625 ? ? metalc7 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 101 B HOH 204 1_555 ? ? ? ? ? ? ? 2.640 ? ? metalc8 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 101 B HOH 205 1_555 ? ? ? ? ? ? ? 2.643 ? ? metalc9 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 101 B HOH 222 1_555 ? ? ? ? ? ? ? 2.608 ? ? metalc10 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 102 A HOH 242 1_555 ? ? ? ? ? ? ? 2.718 ? ? metalc11 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 102 A HOH 248 1_555 ? ? ? ? ? ? ? 2.591 ? ? metalc12 metalc ? ? H HOH . O ? ? ? 1_555 E SR . SR ? ? A HOH 209 B SR 101 1_555 ? ? ? ? ? ? ? 2.607 ? ? metalc13 metalc ? ? B G 3 O6 ? ? ? 1_555 E SR . SR ? ? B G 3 B SR 101 1_555 ? ? ? ? ? ? ? 2.684 ? ? metalc14 metalc ? ? B G 4 O6 ? ? ? 1_555 E SR . SR ? ? B G 4 B SR 101 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc15 metalc ? ? B G 10 O6 ? ? ? 1_555 F SR . SR ? ? B G 10 B SR 102 1_555 ? ? ? ? ? ? ? 2.813 ? ? metalc16 metalc ? ? B G 10 O6 ? ? ? 1_555 G SR . SR ? ? B G 10 B SR 103 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc17 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 203 1_555 ? ? ? ? ? ? ? 2.606 ? ? metalc18 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 214 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc19 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 216 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc20 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 219 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc21 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 221 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc22 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 234 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc23 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 237 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc24 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 241 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc25 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 245 1_555 ? ? ? ? ? ? ? 2.936 ? ? metalc26 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 250 1_555 ? ? ? ? ? ? ? 2.793 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 1 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 1 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 1 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 A ? ? 1_555 B C 8 N3 A ? A G 3 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 A ? ? 1_555 B C 8 O2 A ? A G 3 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 A ? ? 1_555 B C 8 N4 A ? A G 3 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 A ? ? 1_555 B C 7 N3 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 A ? ? 1_555 B C 7 O2 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 A ? ? 1_555 B C 7 N4 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 5 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 5 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 5 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 6 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 6 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 6 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 8 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 8 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 8 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 9 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 9 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 9 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 10 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 10 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 10 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 6 ? A G 6 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? A HOH 242 ? 1_555 68.0 ? 2 OP2 ? A G 6 ? A G 6 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? A HOH 248 ? 1_555 80.9 ? 3 O ? H HOH . ? A HOH 242 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? A HOH 248 ? 1_555 103.7 ? 4 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 75.3 ? 5 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 138.7 ? 6 O ? H HOH . ? A HOH 203 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 72.3 ? 7 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 73.3 ? 8 O ? H HOH . ? A HOH 203 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 77.0 ? 9 O ? H HOH . ? A HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 75.0 ? 10 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 244 ? 1_555 147.1 ? 11 O ? H HOH . ? A HOH 203 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 244 ? 1_555 115.2 ? 12 O ? H HOH . ? A HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 244 ? 1_555 71.9 ? 13 O ? H HOH . ? A HOH 216 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? A HOH 244 ? 1_555 138.2 ? 14 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 204 ? 1_555 77.3 ? 15 O ? H HOH . ? A HOH 203 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 204 ? 1_555 142.0 ? 16 O ? H HOH . ? A HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 204 ? 1_555 142.5 ? 17 O ? H HOH . ? A HOH 216 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 204 ? 1_555 119.0 ? 18 O ? H HOH . ? A HOH 244 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 204 ? 1_555 77.1 ? 19 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 205 ? 1_555 113.8 ? 20 O ? H HOH . ? A HOH 203 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 205 ? 1_555 142.8 ? 21 O ? H HOH . ? A HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 205 ? 1_555 80.1 ? 22 O ? H HOH . ? A HOH 216 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 205 ? 1_555 72.0 ? 23 O ? H HOH . ? A HOH 244 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 205 ? 1_555 77.7 ? 24 O ? I HOH . ? B HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 205 ? 1_555 73.1 ? 25 O ? H HOH . ? A HOH 202 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 77.0 ? 26 O ? H HOH . ? A HOH 203 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 77.8 ? 27 O ? H HOH . ? A HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 119.2 ? 28 O ? H HOH . ? A HOH 216 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 145.0 ? 29 O ? H HOH . ? A HOH 244 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 75.3 ? 30 O ? I HOH . ? B HOH 204 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 70.8 ? 31 O ? I HOH . ? B HOH 205 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? I HOH . ? B HOH 222 ? 1_555 138.7 ? 32 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O6 ? B G 3 ? B G 3 ? 1_555 134.7 ? 33 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 68.5 ? 34 O6 ? B G 3 ? B G 3 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 71.5 ? 35 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 203 ? 1_555 109.7 ? 36 O6 ? B G 3 ? B G 3 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 203 ? 1_555 83.5 ? 37 O6 ? B G 4 ? B G 4 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 203 ? 1_555 80.4 ? 38 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 98.0 ? 39 O6 ? B G 3 ? B G 3 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 63.1 ? 40 O6 ? B G 4 ? B G 4 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 92.5 ? 41 O ? I HOH . ? B HOH 203 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 146.2 ? 42 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 216 ? 1_555 145.8 ? 43 O6 ? B G 3 ? B G 3 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 216 ? 1_555 78.9 ? 44 O6 ? B G 4 ? B G 4 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 216 ? 1_555 143.5 ? 45 O ? I HOH . ? B HOH 203 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 216 ? 1_555 75.3 ? 46 O ? I HOH . ? B HOH 214 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 216 ? 1_555 92.7 ? 47 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 219 ? 1_555 71.8 ? 48 O6 ? B G 3 ? B G 3 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 219 ? 1_555 149.3 ? 49 O6 ? B G 4 ? B G 4 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 219 ? 1_555 118.1 ? 50 O ? I HOH . ? B HOH 203 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 219 ? 1_555 70.6 ? 51 O ? I HOH . ? B HOH 214 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 219 ? 1_555 138.9 ? 52 O ? I HOH . ? B HOH 216 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 219 ? 1_555 78.8 ? 53 O ? H HOH . ? A HOH 209 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 73.2 ? 54 O6 ? B G 3 ? B G 3 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 131.3 ? 55 O6 ? B G 4 ? B G 4 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 137.9 ? 56 O ? I HOH . ? B HOH 203 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 130.0 ? 57 O ? I HOH . ? B HOH 214 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 75.8 ? 58 O ? I HOH . ? B HOH 216 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 78.3 ? 59 O ? I HOH . ? B HOH 219 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 63.1 ? 60 O6 ? B G 10 ? B G 10 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 234 ? 1_555 67.9 ? 61 O6 ? B G 10 ? B G 10 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 237 ? 1_555 89.6 ? 62 O ? I HOH . ? B HOH 234 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 237 ? 1_555 99.5 ? 63 O6 ? B G 10 ? B G 10 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 241 ? 1_555 127.5 ? 64 O ? I HOH . ? B HOH 234 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 241 ? 1_555 74.0 ? 65 O ? I HOH . ? B HOH 237 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 241 ? 1_555 132.1 ? 66 O6 ? B G 10 ? B G 10 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 99.5 ? 67 O ? I HOH . ? B HOH 234 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 49.0 ? 68 O ? I HOH . ? B HOH 237 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 62.7 ? 69 O ? I HOH . ? B HOH 241 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 80.2 ? 70 O6 ? B G 10 ? B G 10 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 250 ? 1_555 152.6 ? 71 O ? I HOH . ? B HOH 234 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 250 ? 1_555 103.7 ? 72 O ? I HOH . ? B HOH 237 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 250 ? 1_555 65.5 ? 73 O ? I HOH . ? B HOH 241 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 250 ? 1_555 70.1 ? 74 O ? I HOH . ? B HOH 245 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 250 ? 1_555 59.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SR 101 ? 8 'BINDING SITE FOR RESIDUE SR A 101' AC2 Software A SR 102 ? 5 'BINDING SITE FOR RESIDUE SR A 102' AC3 Software B SR 101 ? 8 'BINDING SITE FOR RESIDUE SR B 101' AC4 Software B SR 102 ? 9 'BINDING SITE FOR RESIDUE SR B 102' AC5 Software B SR 103 ? 6 'BINDING SITE FOR RESIDUE SR B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH H . ? HOH A 202 . ? 1_555 ? 2 AC1 8 HOH H . ? HOH A 203 . ? 1_555 ? 3 AC1 8 HOH H . ? HOH A 204 . ? 1_555 ? 4 AC1 8 HOH H . ? HOH A 216 . ? 1_555 ? 5 AC1 8 HOH H . ? HOH A 244 . ? 1_555 ? 6 AC1 8 HOH I . ? HOH B 204 . ? 1_555 ? 7 AC1 8 HOH I . ? HOH B 205 . ? 1_555 ? 8 AC1 8 HOH I . ? HOH B 222 . ? 1_555 ? 9 AC2 5 G A 6 ? G A 6 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 234 . ? 8_555 ? 11 AC2 5 HOH H . ? HOH A 242 . ? 1_555 ? 12 AC2 5 HOH H . ? HOH A 243 . ? 1_555 ? 13 AC2 5 HOH H . ? HOH A 248 . ? 1_555 ? 14 AC3 8 HOH H . ? HOH A 209 . ? 1_555 ? 15 AC3 8 G B 3 ? G B 3 . ? 1_555 ? 16 AC3 8 G B 4 ? G B 4 . ? 1_555 ? 17 AC3 8 HOH I . ? HOH B 203 . ? 1_555 ? 18 AC3 8 HOH I . ? HOH B 214 . ? 1_555 ? 19 AC3 8 HOH I . ? HOH B 216 . ? 1_555 ? 20 AC3 8 HOH I . ? HOH B 219 . ? 1_555 ? 21 AC3 8 HOH I . ? HOH B 221 . ? 1_555 ? 22 AC4 9 HOH H . ? HOH A 213 . ? 5_445 ? 23 AC4 9 HOH H . ? HOH A 214 . ? 5_445 ? 24 AC4 9 G B 10 ? G B 10 . ? 1_555 ? 25 AC4 9 SR G . ? SR B 103 . ? 1_555 ? 26 AC4 9 HOH I . ? HOH B 234 . ? 1_555 ? 27 AC4 9 HOH I . ? HOH B 237 . ? 1_555 ? 28 AC4 9 HOH I . ? HOH B 241 . ? 1_555 ? 29 AC4 9 HOH I . ? HOH B 245 . ? 1_555 ? 30 AC4 9 HOH I . ? HOH B 250 . ? 1_555 ? 31 AC5 6 G A 9 ? G A 9 . ? 5_445 ? 32 AC5 6 G A 10 ? G A 10 . ? 5_445 ? 33 AC5 6 HOH H . ? HOH A 213 . ? 5_445 ? 34 AC5 6 HOH H . ? HOH A 214 . ? 5_445 ? 35 AC5 6 G B 10 ? G B 10 . ? 1_555 ? 36 AC5 6 SR F . ? SR B 102 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A G 4 ? A O A HOH 224 ? ? 1.68 2 1 O A HOH 201 ? ? O A HOH 211 ? ? 1.82 3 1 O A HOH 238 ? ? O A HOH 259 ? ? 1.83 4 1 O A HOH 226 ? ? O A HOH 227 ? ? 1.98 5 1 O A HOH 222 ? ? O A HOH 257 ? ? 1.99 6 1 O A HOH 238 ? ? O A HOH 260 ? ? 2.14 7 1 SR A SR 102 ? ? O A HOH 243 ? ? 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 6 ? ? OP2 A G 6 ? ? 1.363 1.485 -0.122 0.017 N 2 1 P A G 10 ? ? OP2 A G 10 ? ? 1.374 1.485 -0.111 0.017 N 3 1 P B C 5 ? ? OP2 B C 5 ? ? 1.303 1.485 -0.182 0.017 N 4 1 "O3'" B G 6 ? ? P B C 7 ? ? 1.533 1.607 -0.074 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B C 8 ? A P B C 8 ? A OP2 B C 8 ? A 98.58 105.70 -7.12 0.90 N 2 1 "O3'" B C 8 ? B P B G 9 ? ? "O5'" B G 9 ? ? 115.52 104.00 11.52 1.90 Y 3 1 "O3'" B C 8 ? A P B G 9 ? ? OP2 B G 9 ? ? 120.07 110.50 9.57 1.10 Y # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 4 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id A _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 C _pdbx_validate_polymer_linkage.auth_seq_id_1 7 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 C _pdbx_validate_polymer_linkage.auth_seq_id_2 8 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 B _pdbx_validate_polymer_linkage.dist 2.84 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 205 ? H HOH . 2 1 B HOH 254 ? I HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 SR SR SR N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4MSR 'double helix' 4MSR 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 10 1_555 0.108 -0.132 -0.289 16.215 -25.211 4.478 1 A_C1:G10_B A 1 ? B 10 ? 19 1 1 A C 2 1_555 B G 9 1_555 0.280 -0.176 0.126 5.991 -18.625 0.889 2 A_C2:G9_B A 2 ? B 9 ? 19 1 1 A G 3 1_555 B C 8 1_555 0.512 -0.555 0.055 7.630 -4.669 0.245 3 A_G3:C8_B A 3 ? B 8 ? 19 1 1 A G 4 1_555 B C 7 1_555 -0.139 -0.070 -0.246 -18.515 4.183 2.137 4 A_G4:C7_B A 4 ? B 7 ? 19 1 1 A C 5 1_555 B G 6 1_555 0.130 -0.124 -0.028 7.514 -6.625 -0.991 5 A_C5:G6_B A 5 ? B 6 ? 19 1 1 A G 6 1_555 B C 5 1_555 -0.171 -0.149 -0.056 -5.123 -15.844 -0.280 6 A_G6:C5_B A 6 ? B 5 ? 19 1 1 A C 7 1_555 B G 4 1_555 0.240 0.039 -0.266 16.356 -11.211 3.605 7 A_C7:G4_B A 7 ? B 4 ? 19 1 1 A C 8 1_555 B G 3 1_555 0.076 -0.096 0.047 -2.619 -9.721 1.063 8 A_C8:G3_B A 8 ? B 3 ? 19 1 1 A G 9 1_555 B C 2 1_555 -0.242 -0.126 -0.413 -11.397 -15.835 1.575 9 A_G9:C2_B A 9 ? B 2 ? 19 1 1 A G 10 1_555 B C 1 1_555 -0.219 -0.060 -0.237 -15.130 -5.995 -0.057 10 A_G10:C1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 10 1_555 A C 2 1_555 B G 9 1_555 -0.770 -1.690 3.489 -6.284 13.963 34.649 -4.400 0.383 2.727 22.155 9.971 37.787 1 AA_C1C2:G9G10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A C 2 1_555 B G 9 1_555 A G 3 1_555 B C 8 1_555 -0.279 -1.608 2.978 -1.639 12.137 31.174 -4.451 0.261 2.226 21.570 2.912 33.437 2 AA_C2G3:C8G9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A G 3 1_555 B C 8 1_555 A G 4 1_555 B C 7 1_555 0.279 -2.610 3.713 4.641 5.772 41.592 -4.269 0.132 3.349 8.051 -6.475 42.217 3 AA_G3G4:C7C8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A G 4 1_555 B C 7 1_555 A C 5 1_555 B G 6 1_555 -0.608 -0.451 2.788 -1.789 11.024 27.341 -2.845 0.876 2.459 22.184 3.599 29.494 4 AA_G4C5:G6C7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A C 5 1_555 B G 6 1_555 A G 6 1_555 B C 5 1_555 0.759 -1.934 3.356 1.848 14.535 34.477 -4.781 -0.960 2.411 23.265 -2.958 37.374 5 AA_C5G6:C5G6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A G 6 1_555 B C 5 1_555 A C 7 1_555 B G 4 1_555 0.667 -0.977 2.787 3.635 10.103 32.806 -2.937 -0.662 2.446 17.319 -6.232 34.473 6 AA_G6C7:G4C5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A C 7 1_555 B G 4 1_555 A C 8 1_555 B G 3 1_555 -0.343 -2.447 3.454 -2.460 12.236 35.388 -5.321 0.231 2.517 19.399 3.901 37.458 7 AA_C7C8:G3G4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A C 8 1_555 B G 3 1_555 A G 9 1_555 B C 2 1_555 0.318 -1.766 3.446 2.197 14.318 29.364 -5.470 -0.207 2.370 26.322 -4.040 32.672 8 AA_C8G9:C2G3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A G 9 1_555 B C 2 1_555 A G 10 1_555 B C 1 1_555 0.091 -2.045 3.393 0.134 8.659 29.323 -5.515 -0.147 2.694 16.652 -0.257 30.548 9 AA_G9G10:C1C2_BB A 9 ? B 2 ? A 10 ? B 1 ? # _atom_sites.entry_id 4MSR _atom_sites.fract_transf_matrix[1][1] 0.041290 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021976 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012251 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_