data_4MYM # _entry.id 4MYM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MYM RCSB RCSB082529 WWPDB D_1000082529 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-029072 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MYM _pdbx_database_status.recvd_initial_deposition_date 2013-09-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eswaramoorthy, S.' 1 'Chamala, S.' 2 'Evans, B.' 3 'Foti, F.' 4 'Gizzi, A.' 5 'Hillerich, B.' 6 'Kar, A.' 7 'Lafleur, J.' 8 'Seidel, R.' 9 'Villigas, G.' 10 'Zencheck, W.' 11 'AL Obaidi, N.' 12 'Almo, S.C.' 13 'Swaminathan, S.' 14 'New York Structural Genomics Research Consortium (NYSGRC)' 15 # _citation.id primary _citation.title 'Crystal structure of a glyoxalase/ bleomycin resistance protein/ dioxygenase from Nocardioides.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Eswaramoorthy, S.' 1 primary 'Almo, S.C.' 2 primary 'Swaminathan, S.' 3 # _cell.entry_id 4MYM _cell.length_a 42.660 _cell.length_b 83.589 _cell.length_c 102.413 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MYM _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glyoxalase/bleomycin resistance protein/dioxygenase' 19770.479 1 ? ? ? ? 2 non-polymer syn '2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' 209.240 1 ? ? ? ? 3 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGVDLGTENLYFQS(MSE)VTVSRPTITDLCLVTHDLEASVEFYTTKLGYTLSSR(MSE)PGFADFEG PGVILALWDAQLIRETTGVPALAEEPSGRTV(MSE)VAVELSSPVEIDTAYERLRARGIEFYSPPADYPWNARCIYFPGP CGEFWEYFAWLEGGKPGQLGAASTTHDERTIP ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMVTVSRPTITDLCLVTHDLEASVEFYTTKLGYTLSSRMPGFADFEGPGVILALWDAQL IRETTGVPALAEEPSGRTVMVAVELSSPVEIDTAYERLRARGIEFYSPPADYPWNARCIYFPGPCGEFWEYFAWLEGGKP GQLGAASTTHDERTIP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-029072 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MSE n 1 24 VAL n 1 25 THR n 1 26 VAL n 1 27 SER n 1 28 ARG n 1 29 PRO n 1 30 THR n 1 31 ILE n 1 32 THR n 1 33 ASP n 1 34 LEU n 1 35 CYS n 1 36 LEU n 1 37 VAL n 1 38 THR n 1 39 HIS n 1 40 ASP n 1 41 LEU n 1 42 GLU n 1 43 ALA n 1 44 SER n 1 45 VAL n 1 46 GLU n 1 47 PHE n 1 48 TYR n 1 49 THR n 1 50 THR n 1 51 LYS n 1 52 LEU n 1 53 GLY n 1 54 TYR n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 SER n 1 59 ARG n 1 60 MSE n 1 61 PRO n 1 62 GLY n 1 63 PHE n 1 64 ALA n 1 65 ASP n 1 66 PHE n 1 67 GLU n 1 68 GLY n 1 69 PRO n 1 70 GLY n 1 71 VAL n 1 72 ILE n 1 73 LEU n 1 74 ALA n 1 75 LEU n 1 76 TRP n 1 77 ASP n 1 78 ALA n 1 79 GLN n 1 80 LEU n 1 81 ILE n 1 82 ARG n 1 83 GLU n 1 84 THR n 1 85 THR n 1 86 GLY n 1 87 VAL n 1 88 PRO n 1 89 ALA n 1 90 LEU n 1 91 ALA n 1 92 GLU n 1 93 GLU n 1 94 PRO n 1 95 SER n 1 96 GLY n 1 97 ARG n 1 98 THR n 1 99 VAL n 1 100 MSE n 1 101 VAL n 1 102 ALA n 1 103 VAL n 1 104 GLU n 1 105 LEU n 1 106 SER n 1 107 SER n 1 108 PRO n 1 109 VAL n 1 110 GLU n 1 111 ILE n 1 112 ASP n 1 113 THR n 1 114 ALA n 1 115 TYR n 1 116 GLU n 1 117 ARG n 1 118 LEU n 1 119 ARG n 1 120 ALA n 1 121 ARG n 1 122 GLY n 1 123 ILE n 1 124 GLU n 1 125 PHE n 1 126 TYR n 1 127 SER n 1 128 PRO n 1 129 PRO n 1 130 ALA n 1 131 ASP n 1 132 TYR n 1 133 PRO n 1 134 TRP n 1 135 ASN n 1 136 ALA n 1 137 ARG n 1 138 CYS n 1 139 ILE n 1 140 TYR n 1 141 PHE n 1 142 PRO n 1 143 GLY n 1 144 PRO n 1 145 CYS n 1 146 GLY n 1 147 GLU n 1 148 PHE n 1 149 TRP n 1 150 GLU n 1 151 TYR n 1 152 PHE n 1 153 ALA n 1 154 TRP n 1 155 LEU n 1 156 GLU n 1 157 GLY n 1 158 GLY n 1 159 LYS n 1 160 PRO n 1 161 GLY n 1 162 GLN n 1 163 LEU n 1 164 GLY n 1 165 ALA n 1 166 ALA n 1 167 SER n 1 168 THR n 1 169 THR n 1 170 HIS n 1 171 ASP n 1 172 GLU n 1 173 ARG n 1 174 THR n 1 175 ILE n 1 176 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Noca_4190 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'BAA-499 / JS614' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nocardioides sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 196162 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1SPF2_NOCSJ _struct_ref.pdbx_db_accession A1SPF2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TVSRPTITDLCLVTHDLEASVEFYTTKLGYTLSSRMPGFADFEGPGVILALWDAQLIRETTGVPALAEEPSGRTVMVAVE LSSPVEIDTAYERLRARGIEFYSPPADYPWNARCIYFPGPCGEFWEYFAWLEGGKPGQLGAASTTHDERTIP ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MYM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 25 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 176 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1SPF2 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 153 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MYM MSE A 1 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -21 1 1 4MYM HIS A 2 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -20 2 1 4MYM HIS A 3 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -19 3 1 4MYM HIS A 4 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -18 4 1 4MYM HIS A 5 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -17 5 1 4MYM HIS A 6 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -16 6 1 4MYM HIS A 7 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -15 7 1 4MYM SER A 8 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -14 8 1 4MYM SER A 9 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -13 9 1 4MYM GLY A 10 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -12 10 1 4MYM VAL A 11 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -11 11 1 4MYM ASP A 12 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -10 12 1 4MYM LEU A 13 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -9 13 1 4MYM GLY A 14 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -8 14 1 4MYM THR A 15 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -7 15 1 4MYM GLU A 16 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -6 16 1 4MYM ASN A 17 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -5 17 1 4MYM LEU A 18 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -4 18 1 4MYM TYR A 19 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -3 19 1 4MYM PHE A 20 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -2 20 1 4MYM GLN A 21 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' -1 21 1 4MYM SER A 22 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' 0 22 1 4MYM MSE A 23 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' 1 23 1 4MYM VAL A 24 ? UNP A1SPF2 ? ? 'EXPRESSION TAG' 2 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BTB non-polymer . '2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' 'BIS-TRIS BUFFER' 'C8 H19 N O5' 209.240 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MYM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '25% PEG3350, 0.1M Bis-Tris, 0.2M NaCl, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-09-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 4MYM _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 14825 _reflns.number_all 14825 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.0 _reflns.B_iso_Wilson_estimate 20.012 _reflns.pdbx_redundancy 13.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.96 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.455 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 12.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1228 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MYM _refine.ls_number_reflns_obs 14016 _refine.ls_number_reflns_all 14762 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.03 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.50 _refine.ls_R_factor_obs 0.18798 _refine.ls_R_factor_all 0.218 _refine.ls_R_factor_R_work 0.18641 _refine.ls_R_factor_R_free 0.21722 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 746 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 25.849 _refine.aniso_B[1][1] -0.30 _refine.aniso_B[2][2] -2.15 _refine.aniso_B[3][3] 2.45 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.126 _refine.overall_SU_ML 0.093 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.207 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1183 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1249 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 38.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.020 ? 1232 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 1118 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.256 1.983 ? 1682 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.737 3.000 ? 2583 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.646 5.000 ? 150 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 32.122 23.148 ? 54 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.447 15.000 ? 169 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.901 15.000 ? 8 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.071 0.200 ? 181 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1378 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 280 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1.324 2.480 ? 603 ? 'X-RAY DIFFRACTION' r_mcbond_other 1.308 2.473 ? 602 ? 'X-RAY DIFFRACTION' r_mcangle_it 2.175 3.703 ? 752 ? 'X-RAY DIFFRACTION' r_mcangle_other 2.179 3.709 ? 753 ? 'X-RAY DIFFRACTION' r_scbond_it 1.882 2.652 ? 628 ? 'X-RAY DIFFRACTION' r_scbond_other 1.881 2.652 ? 628 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 2.985 3.893 ? 931 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 4.411 20.039 ? 1379 ? 'X-RAY DIFFRACTION' r_long_range_B_other 4.405 19.971 ? 1367 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.950 _refine_ls_shell.number_reflns_R_work 993 _refine_ls_shell.R_factor_R_work 0.314 _refine_ls_shell.percent_reflns_obs 96.95 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1048 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MYM _struct.title 'Crystal structure of a glyoxalase/ bleomycin resistance protein/ dioxygenase from Nocardioides' _struct.pdbx_descriptor 'Glyoxalase/bleomycin resistance protein/dioxygenase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MYM _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;PSI-Biology, NYSGRC, Structural Genomics, New York Structural Genomics Research Consortium, metalloproteins, antibiotic resistance proteins, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 14 ? THR A 25 ? GLY A -8 THR A 3 1 ? 12 HELX_P HELX_P2 2 ASP A 40 ? LYS A 51 ? ASP A 18 LYS A 29 1 ? 12 HELX_P HELX_P3 3 ALA A 78 ? GLY A 86 ? ALA A 56 GLY A 64 1 ? 9 HELX_P HELX_P4 4 SER A 107 ? ARG A 121 ? SER A 85 ARG A 99 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 22 C ? ? ? 1_555 A MSE 23 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 23 C ? ? ? 1_555 A VAL 24 N ? ? A MSE 1 A VAL 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A ARG 59 C ? ? ? 1_555 A MSE 60 N ? ? A ARG 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 60 C ? ? ? 1_555 A PRO 61 N ? ? A MSE 38 A PRO 39 1_555 ? ? ? ? ? ? ? 1.345 ? covale5 covale ? ? A VAL 99 C ? ? ? 1_555 A MSE 100 N ? ? A VAL 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 100 C ? ? ? 1_555 A VAL 101 N ? ? A MSE 78 A VAL 79 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 68 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 46 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 69 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 47 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.09 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 33 ? THR A 38 ? ASP A 11 THR A 16 A 2 ILE A 72 ? ASP A 77 ? ILE A 50 ASP A 55 A 3 PHE A 63 ? PHE A 66 ? PHE A 41 PHE A 44 A 4 LEU A 56 ? MSE A 60 ? LEU A 34 MSE A 38 B 1 VAL A 99 ? GLU A 104 ? VAL A 77 GLU A 82 B 2 GLU A 147 ? TRP A 154 ? GLU A 125 TRP A 132 B 3 ALA A 136 ? PRO A 142 ? ALA A 114 PRO A 120 B 4 ALA A 130 ? TYR A 132 ? ALA A 108 TYR A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 34 ? N LEU A 12 O ILE A 72 ? O ILE A 50 A 2 3 O LEU A 75 ? O LEU A 53 N ALA A 64 ? N ALA A 42 A 3 4 O ASP A 65 ? O ASP A 43 N SER A 57 ? N SER A 35 B 1 2 N VAL A 103 ? N VAL A 81 O GLU A 150 ? O GLU A 128 B 2 3 O TRP A 149 ? O TRP A 127 N PHE A 141 ? N PHE A 119 B 3 4 O ALA A 136 ? O ALA A 114 N TYR A 132 ? N TYR A 110 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE BTB A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 PHE A 63 ? PHE A 41 . ? 4_556 ? 2 AC1 12 TRP A 76 ? TRP A 54 . ? 4_556 ? 3 AC1 12 MSE A 100 ? MSE A 78 . ? 1_555 ? 4 AC1 12 TRP A 134 ? TRP A 112 . ? 1_555 ? 5 AC1 12 CYS A 138 ? CYS A 116 . ? 1_555 ? 6 AC1 12 GLU A 150 ? GLU A 128 . ? 1_555 ? 7 AC1 12 PHE A 152 ? PHE A 130 . ? 1_555 ? 8 AC1 12 TRP A 154 ? TRP A 132 . ? 1_555 ? 9 AC1 12 HOH C . ? HOH A 319 . ? 1_555 ? 10 AC1 12 HOH C . ? HOH A 324 . ? 4_556 ? 11 AC1 12 HOH C . ? HOH A 325 . ? 5_545 ? 12 AC1 12 HOH C . ? HOH A 332 . ? 1_555 ? # _database_PDB_matrix.entry_id 4MYM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MYM _atom_sites.fract_transf_matrix[1][1] 0.023441 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011963 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009764 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -21 ? ? ? A . n A 1 2 HIS 2 -20 ? ? ? A . n A 1 3 HIS 3 -19 ? ? ? A . n A 1 4 HIS 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 SER 8 -14 ? ? ? A . n A 1 9 SER 9 -13 ? ? ? A . n A 1 10 GLY 10 -12 ? ? ? A . n A 1 11 VAL 11 -11 ? ? ? A . n A 1 12 ASP 12 -10 ? ? ? A . n A 1 13 LEU 13 -9 ? ? ? A . n A 1 14 GLY 14 -8 -8 GLY GLY A . n A 1 15 THR 15 -7 -7 THR THR A . n A 1 16 GLU 16 -6 -6 GLU GLU A . n A 1 17 ASN 17 -5 -5 ASN ASN A . n A 1 18 LEU 18 -4 -4 LEU LEU A . n A 1 19 TYR 19 -3 -3 TYR TYR A . n A 1 20 PHE 20 -2 -2 PHE PHE A . n A 1 21 GLN 21 -1 -1 GLN GLN A . n A 1 22 SER 22 0 0 SER SER A . n A 1 23 MSE 23 1 1 MSE MSE A . n A 1 24 VAL 24 2 2 VAL VAL A . n A 1 25 THR 25 3 3 THR THR A . n A 1 26 VAL 26 4 4 VAL VAL A . n A 1 27 SER 27 5 5 SER SER A . n A 1 28 ARG 28 6 6 ARG ARG A . n A 1 29 PRO 29 7 7 PRO PRO A . n A 1 30 THR 30 8 8 THR THR A . n A 1 31 ILE 31 9 9 ILE ILE A . n A 1 32 THR 32 10 10 THR THR A . n A 1 33 ASP 33 11 11 ASP ASP A . n A 1 34 LEU 34 12 12 LEU LEU A . n A 1 35 CYS 35 13 13 CYS CYS A . n A 1 36 LEU 36 14 14 LEU LEU A . n A 1 37 VAL 37 15 15 VAL VAL A . n A 1 38 THR 38 16 16 THR THR A . n A 1 39 HIS 39 17 17 HIS HIS A . n A 1 40 ASP 40 18 18 ASP ASP A . n A 1 41 LEU 41 19 19 LEU LEU A . n A 1 42 GLU 42 20 20 GLU GLU A . n A 1 43 ALA 43 21 21 ALA ALA A . n A 1 44 SER 44 22 22 SER SER A . n A 1 45 VAL 45 23 23 VAL VAL A . n A 1 46 GLU 46 24 24 GLU GLU A . n A 1 47 PHE 47 25 25 PHE PHE A . n A 1 48 TYR 48 26 26 TYR TYR A . n A 1 49 THR 49 27 27 THR THR A . n A 1 50 THR 50 28 28 THR THR A . n A 1 51 LYS 51 29 29 LYS LYS A . n A 1 52 LEU 52 30 30 LEU LEU A . n A 1 53 GLY 53 31 31 GLY GLY A . n A 1 54 TYR 54 32 32 TYR TYR A . n A 1 55 THR 55 33 33 THR THR A . n A 1 56 LEU 56 34 34 LEU LEU A . n A 1 57 SER 57 35 35 SER SER A . n A 1 58 SER 58 36 36 SER SER A . n A 1 59 ARG 59 37 37 ARG ARG A . n A 1 60 MSE 60 38 38 MSE MSE A . n A 1 61 PRO 61 39 39 PRO PRO A . n A 1 62 GLY 62 40 40 GLY GLY A . n A 1 63 PHE 63 41 41 PHE PHE A . n A 1 64 ALA 64 42 42 ALA ALA A . n A 1 65 ASP 65 43 43 ASP ASP A . n A 1 66 PHE 66 44 44 PHE PHE A . n A 1 67 GLU 67 45 45 GLU GLU A . n A 1 68 GLY 68 46 46 GLY GLY A . n A 1 69 PRO 69 47 47 PRO PRO A . n A 1 70 GLY 70 48 48 GLY GLY A . n A 1 71 VAL 71 49 49 VAL VAL A . n A 1 72 ILE 72 50 50 ILE ILE A . n A 1 73 LEU 73 51 51 LEU LEU A . n A 1 74 ALA 74 52 52 ALA ALA A . n A 1 75 LEU 75 53 53 LEU LEU A . n A 1 76 TRP 76 54 54 TRP TRP A . n A 1 77 ASP 77 55 55 ASP ASP A . n A 1 78 ALA 78 56 56 ALA ALA A . n A 1 79 GLN 79 57 57 GLN GLN A . n A 1 80 LEU 80 58 58 LEU LEU A . n A 1 81 ILE 81 59 59 ILE ILE A . n A 1 82 ARG 82 60 60 ARG ARG A . n A 1 83 GLU 83 61 61 GLU GLU A . n A 1 84 THR 84 62 62 THR THR A . n A 1 85 THR 85 63 63 THR THR A . n A 1 86 GLY 86 64 64 GLY GLY A . n A 1 87 VAL 87 65 65 VAL VAL A . n A 1 88 PRO 88 66 66 PRO PRO A . n A 1 89 ALA 89 67 67 ALA ALA A . n A 1 90 LEU 90 68 68 LEU LEU A . n A 1 91 ALA 91 69 69 ALA ALA A . n A 1 92 GLU 92 70 70 GLU GLU A . n A 1 93 GLU 93 71 71 GLU GLU A . n A 1 94 PRO 94 72 72 PRO PRO A . n A 1 95 SER 95 73 73 SER SER A . n A 1 96 GLY 96 74 74 GLY GLY A . n A 1 97 ARG 97 75 75 ARG ARG A . n A 1 98 THR 98 76 76 THR THR A . n A 1 99 VAL 99 77 77 VAL VAL A . n A 1 100 MSE 100 78 78 MSE MSE A . n A 1 101 VAL 101 79 79 VAL VAL A . n A 1 102 ALA 102 80 80 ALA ALA A . n A 1 103 VAL 103 81 81 VAL VAL A . n A 1 104 GLU 104 82 82 GLU GLU A . n A 1 105 LEU 105 83 83 LEU LEU A . n A 1 106 SER 106 84 84 SER SER A . n A 1 107 SER 107 85 85 SER SER A . n A 1 108 PRO 108 86 86 PRO PRO A . n A 1 109 VAL 109 87 87 VAL VAL A . n A 1 110 GLU 110 88 88 GLU GLU A . n A 1 111 ILE 111 89 89 ILE ILE A . n A 1 112 ASP 112 90 90 ASP ASP A . n A 1 113 THR 113 91 91 THR THR A . n A 1 114 ALA 114 92 92 ALA ALA A . n A 1 115 TYR 115 93 93 TYR TYR A . n A 1 116 GLU 116 94 94 GLU GLU A . n A 1 117 ARG 117 95 95 ARG ARG A . n A 1 118 LEU 118 96 96 LEU LEU A . n A 1 119 ARG 119 97 97 ARG ARG A . n A 1 120 ALA 120 98 98 ALA ALA A . n A 1 121 ARG 121 99 99 ARG ARG A . n A 1 122 GLY 122 100 100 GLY GLY A . n A 1 123 ILE 123 101 101 ILE ILE A . n A 1 124 GLU 124 102 102 GLU GLU A . n A 1 125 PHE 125 103 103 PHE PHE A . n A 1 126 TYR 126 104 104 TYR TYR A . n A 1 127 SER 127 105 105 SER SER A . n A 1 128 PRO 128 106 106 PRO PRO A . n A 1 129 PRO 129 107 107 PRO PRO A . n A 1 130 ALA 130 108 108 ALA ALA A . n A 1 131 ASP 131 109 109 ASP ASP A . n A 1 132 TYR 132 110 110 TYR TYR A . n A 1 133 PRO 133 111 111 PRO PRO A . n A 1 134 TRP 134 112 112 TRP TRP A . n A 1 135 ASN 135 113 113 ASN ASN A . n A 1 136 ALA 136 114 114 ALA ALA A . n A 1 137 ARG 137 115 115 ARG ARG A . n A 1 138 CYS 138 116 116 CYS CYS A . n A 1 139 ILE 139 117 117 ILE ILE A . n A 1 140 TYR 140 118 118 TYR TYR A . n A 1 141 PHE 141 119 119 PHE PHE A . n A 1 142 PRO 142 120 120 PRO PRO A . n A 1 143 GLY 143 121 121 GLY GLY A . n A 1 144 PRO 144 122 122 PRO PRO A . n A 1 145 CYS 145 123 123 CYS CYS A . n A 1 146 GLY 146 124 124 GLY GLY A . n A 1 147 GLU 147 125 125 GLU GLU A . n A 1 148 PHE 148 126 126 PHE PHE A . n A 1 149 TRP 149 127 127 TRP TRP A . n A 1 150 GLU 150 128 128 GLU GLU A . n A 1 151 TYR 151 129 129 TYR TYR A . n A 1 152 PHE 152 130 130 PHE PHE A . n A 1 153 ALA 153 131 131 ALA ALA A . n A 1 154 TRP 154 132 132 TRP TRP A . n A 1 155 LEU 155 133 133 LEU LEU A . n A 1 156 GLU 156 134 134 GLU GLU A . n A 1 157 GLY 157 135 135 GLY GLY A . n A 1 158 GLY 158 136 136 GLY GLY A . n A 1 159 LYS 159 137 137 LYS LYS A . n A 1 160 PRO 160 138 138 PRO PRO A . n A 1 161 GLY 161 139 139 GLY GLY A . n A 1 162 GLN 162 140 140 GLN GLN A . n A 1 163 LEU 163 141 141 LEU LEU A . n A 1 164 GLY 164 142 142 GLY GLY A . n A 1 165 ALA 165 143 ? ? ? A . n A 1 166 ALA 166 144 ? ? ? A . n A 1 167 SER 167 145 ? ? ? A . n A 1 168 THR 168 146 ? ? ? A . n A 1 169 THR 169 147 ? ? ? A . n A 1 170 HIS 170 148 ? ? ? A . n A 1 171 ASP 171 149 ? ? ? A . n A 1 172 GLU 172 150 ? ? ? A . n A 1 173 ARG 173 151 ? ? ? A . n A 1 174 THR 174 152 ? ? ? A . n A 1 175 ILE 175 153 ? ? ? A . n A 1 176 PRO 176 154 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 100 A MSE 78 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5450 ? 1 MORE -38 ? 1 'SSA (A^2)' 14950 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 102.4130000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SHELXS phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 18 ? ? -159.10 86.39 2 1 ASN A 113 ? ? 70.39 34.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -21 ? A MSE 1 2 1 Y 1 A HIS -20 ? A HIS 2 3 1 Y 1 A HIS -19 ? A HIS 3 4 1 Y 1 A HIS -18 ? A HIS 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A SER -14 ? A SER 8 9 1 Y 1 A SER -13 ? A SER 9 10 1 Y 1 A GLY -12 ? A GLY 10 11 1 Y 1 A VAL -11 ? A VAL 11 12 1 Y 1 A ASP -10 ? A ASP 12 13 1 Y 1 A LEU -9 ? A LEU 13 14 1 Y 1 A ALA 143 ? A ALA 165 15 1 Y 1 A ALA 144 ? A ALA 166 16 1 Y 1 A SER 145 ? A SER 167 17 1 Y 1 A THR 146 ? A THR 168 18 1 Y 1 A THR 147 ? A THR 169 19 1 Y 1 A HIS 148 ? A HIS 170 20 1 Y 1 A ASP 149 ? A ASP 171 21 1 Y 1 A GLU 150 ? A GLU 172 22 1 Y 1 A ARG 151 ? A ARG 173 23 1 Y 1 A THR 152 ? A THR 174 24 1 Y 1 A ILE 153 ? A ILE 175 25 1 Y 1 A PRO 154 ? A PRO 176 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' BTB 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTB 1 201 201 BTB BTB A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 15 HOH HOH A . C 3 HOH 16 316 16 HOH HOH A . C 3 HOH 17 317 17 HOH HOH A . C 3 HOH 18 318 18 HOH HOH A . C 3 HOH 19 319 19 HOH HOH A . C 3 HOH 20 320 20 HOH HOH A . C 3 HOH 21 321 21 HOH HOH A . C 3 HOH 22 322 22 HOH HOH A . C 3 HOH 23 323 23 HOH HOH A . C 3 HOH 24 324 24 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 26 HOH HOH A . C 3 HOH 27 327 27 HOH HOH A . C 3 HOH 28 328 28 HOH HOH A . C 3 HOH 29 329 29 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 34 HOH HOH A . C 3 HOH 35 335 36 HOH HOH A . C 3 HOH 36 336 37 HOH HOH A . C 3 HOH 37 337 38 HOH HOH A . C 3 HOH 38 338 39 HOH HOH A . C 3 HOH 39 339 40 HOH HOH A . C 3 HOH 40 340 41 HOH HOH A . C 3 HOH 41 341 42 HOH HOH A . C 3 HOH 42 342 43 HOH HOH A . C 3 HOH 43 343 44 HOH HOH A . C 3 HOH 44 344 46 HOH HOH A . C 3 HOH 45 345 48 HOH HOH A . C 3 HOH 46 346 49 HOH HOH A . C 3 HOH 47 347 50 HOH HOH A . C 3 HOH 48 348 51 HOH HOH A . C 3 HOH 49 349 53 HOH HOH A . C 3 HOH 50 350 54 HOH HOH A . C 3 HOH 51 351 55 HOH HOH A . C 3 HOH 52 352 56 HOH HOH A . #