data_4N1D # _entry.id 4N1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4N1D RCSB RCSB082628 WWPDB D_1000082628 # _pdbx_database_status.entry_id 4N1D _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Esquivies, L.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Designer Nodal/BMP2 Chimeras Mimic Nodal Signaling, Promote Chondrogenesis, and Reveal a BMP2-like Structure.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 1788 _citation.page_last 1797 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24311780 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.529180 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Esquivies, L.' 1 primary 'Blackler, A.' 2 primary 'Peran, M.' 3 primary 'Rodriguez-Esteban, C.' 4 primary 'Izpisua Belmonte, J.C.' 5 primary 'Booker, E.' 6 primary 'Gray, P.C.' 7 primary 'Ahn, C.' 8 primary 'Kwiatkowski, W.' 9 primary 'Choe, S.' 10 # _cell.entry_id 4N1D _cell.length_a 95.570 _cell.length_b 95.570 _cell.length_c 97.494 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4N1D _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nodal/BMP2 chimera protein' 13584.686 1 ? ? ? ? 2 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BMP-2, Bone morphogenetic protein 2A, BMP-2A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQAKHKQRKRLKSSCKRHPLYVDFNLIGWGSWIIYPKQYNAYRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPSTC CVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR ; _entity_poly.pdbx_seq_one_letter_code_can ;MQAKHKQRKRLKSSCKRHPLYVDFNLIGWGSWIIYPKQYNAYRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPSTC CVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ALA n 1 4 LYS n 1 5 HIS n 1 6 LYS n 1 7 GLN n 1 8 ARG n 1 9 LYS n 1 10 ARG n 1 11 LEU n 1 12 LYS n 1 13 SER n 1 14 SER n 1 15 CYS n 1 16 LYS n 1 17 ARG n 1 18 HIS n 1 19 PRO n 1 20 LEU n 1 21 TYR n 1 22 VAL n 1 23 ASP n 1 24 PHE n 1 25 ASN n 1 26 LEU n 1 27 ILE n 1 28 GLY n 1 29 TRP n 1 30 GLY n 1 31 SER n 1 32 TRP n 1 33 ILE n 1 34 ILE n 1 35 TYR n 1 36 PRO n 1 37 LYS n 1 38 GLN n 1 39 TYR n 1 40 ASN n 1 41 ALA n 1 42 TYR n 1 43 ARG n 1 44 CYS n 1 45 GLU n 1 46 GLY n 1 47 GLU n 1 48 CYS n 1 49 PRO n 1 50 ASN n 1 51 PRO n 1 52 VAL n 1 53 GLY n 1 54 GLU n 1 55 GLU n 1 56 PHE n 1 57 HIS n 1 58 PRO n 1 59 THR n 1 60 ASN n 1 61 HIS n 1 62 ALA n 1 63 TYR n 1 64 ILE n 1 65 GLN n 1 66 SER n 1 67 LEU n 1 68 LEU n 1 69 LYS n 1 70 ARG n 1 71 TYR n 1 72 GLN n 1 73 PRO n 1 74 HIS n 1 75 ARG n 1 76 VAL n 1 77 PRO n 1 78 SER n 1 79 THR n 1 80 CYS n 1 81 CYS n 1 82 VAL n 1 83 PRO n 1 84 THR n 1 85 GLU n 1 86 LEU n 1 87 SER n 1 88 ALA n 1 89 ILE n 1 90 SER n 1 91 MET n 1 92 LEU n 1 93 TYR n 1 94 LEU n 1 95 ASP n 1 96 GLU n 1 97 ASN n 1 98 GLU n 1 99 LYS n 1 100 VAL n 1 101 VAL n 1 102 LEU n 1 103 LYS n 1 104 ASN n 1 105 TYR n 1 106 GLN n 1 107 ASP n 1 108 MET n 1 109 VAL n 1 110 VAL n 1 111 GLU n 1 112 GLY n 1 113 CYS n 1 114 GLY n 1 115 CYS n 1 116 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 2 24 human ? 'BMP2, BMP2A, Nodal' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 3 sample ? 82 116 human ? 'BMP2, BMP2A, Nodal' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample ? 25 81 human ? 'BMP2, BMP2A, Nodal' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP BMP2_HUMAN P12643 1 QAKHKQRKRLKSSCKRHPLYVDF 283 ? 2 UNP NODAL_HUMAN Q96S42 1 NLIGWGSWIIYPKQYNAYRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPSTCC 257 ? 3 UNP BMP2_HUMAN P12643 1 VPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 362 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4N1D A 2 ? 24 ? P12643 283 ? 305 ? 1 23 2 2 4N1D A 25 ? 81 ? Q96S42 257 ? 313 ? 24 80 3 3 4N1D A 82 ? 116 ? P12643 362 ? 396 ? 81 115 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4N1D _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.15 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2M NaCl, 0.1 M Na acetate pH 4.6, 30% 2-Methyl-2,4-pentanediol, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.details ? _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-02-27 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.912 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 41.400 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs ? _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4N1D _reflns.B_iso_Wilson_estimate ? _reflns.percent_possible_obs 99.200 _reflns.pdbx_Rsym_value 0.033 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all ? _reflns.d_resolution_low 31.548 _reflns.pdbx_redundancy 9.700 _reflns.number_obs 13316 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.910 2.020 ? 13501 ? 0.342 2.300 0.342 ? 7.400 ? 1821 94.300 1 1 2.020 2.140 ? 18951 ? 0.237 3.300 0.237 ? 10.300 ? 1845 100.000 2 1 2.140 2.290 ? 17221 ? 0.157 4.900 0.157 ? 10.000 ? 1722 100.000 3 1 2.290 2.470 ? 16266 ? 0.100 7.700 0.100 ? 10.200 ? 1601 100.000 4 1 2.470 2.700 ? 15158 ? 0.067 11.300 0.067 ? 10.200 ? 1489 100.000 5 1 2.700 3.020 ? 13443 ? 0.043 17.100 0.043 ? 9.900 ? 1352 100.000 6 1 3.020 3.490 ? 12156 ? 0.027 26.300 0.027 ? 10.200 ? 1193 100.000 7 1 3.490 4.280 ? 10310 ? 0.017 38.400 0.017 ? 9.900 ? 1040 100.000 8 1 4.280 6.050 ? 7637 ? 0.015 42.100 0.015 ? 9.700 ? 787 100.000 9 1 6.050 31.548 ? 4282 ? 0.015 40.900 0.015 ? 9.200 ? 466 99.400 10 1 # _refine.ls_percent_reflns_R_free 9.9700 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_R_Free_selection_details random _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4N1D _refine.aniso_B[2][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.1600 _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] ? _refine.pdbx_stereochemistry_target_values ML _refine.aniso_B[3][3] ? _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] ? _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.1784 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.correlation_coeff_Fo_to_Fc ? _refine.ls_number_reflns_R_free 1328 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_ls_sigma_F 1.360 _refine.ls_percent_reflns_obs 99.1100 _refine.ls_R_factor_R_work 0.1754 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.9120 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min 24.520 _refine.occupancy_min 0.700 _refine.B_iso_mean 43.1648 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] ? _refine.B_iso_max 100.870 _refine.ls_d_res_low 31.5480 _refine.pdbx_overall_phase_error 19.7800 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.aniso_B[1][2] ? _refine.ls_R_factor_R_free 0.2039 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 13314 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 852 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 924 _refine_hist.d_res_high 1.9120 _refine_hist.d_res_low 31.5480 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 881 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1192 1.136 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 123 0.080 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 155 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 329 13.981 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.9120 1.9885 9 92.0000 1226 . 0.1909 0.2260 . 137 . 1363 . . 'X-RAY DIFFRACTION' 1.9885 2.0790 9 100.0000 1329 . 0.1808 0.2100 . 153 . 1482 . . 'X-RAY DIFFRACTION' 2.0790 2.1886 9 100.0000 1293 . 0.1813 0.2147 . 161 . 1454 . . 'X-RAY DIFFRACTION' 2.1886 2.3257 9 100.0000 1344 . 0.1716 0.2199 . 137 . 1481 . . 'X-RAY DIFFRACTION' 2.3257 2.5052 9 100.0000 1357 . 0.1810 0.2052 . 127 . 1484 . . 'X-RAY DIFFRACTION' 2.5052 2.7572 9 100.0000 1343 . 0.1788 0.2420 . 148 . 1491 . . 'X-RAY DIFFRACTION' 2.7572 3.1558 9 100.0000 1335 . 0.1750 0.2029 . 154 . 1489 . . 'X-RAY DIFFRACTION' 3.1558 3.9748 9 100.0000 1364 . 0.1642 0.1782 . 146 . 1510 . . 'X-RAY DIFFRACTION' 3.9748 31.5522 9 100.0000 1395 . 0.1788 0.2058 . 165 . 1560 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4N1D _struct.title 'Nodal/BMP2 chimera NB250' _struct.pdbx_descriptor 'Bone morphogenetic protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4N1D _struct_keywords.pdbx_keywords 'Cytokine, Signaling Protein' _struct_keywords.text 'Cytokine, Signaling Protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'Dimer generated by the operations: y,x,-z' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 53 ? HIS A 57 ? GLY A 52 HIS A 56 5 ? 5 HELX_P HELX_P2 2 THR A 59 ? GLN A 72 ? THR A 58 GLN A 71 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 14 A CYS 80 1_555 ? ? ? ? ? ? ? 2.050 ? disulf2 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 113 SG ? ? A CYS 43 A CYS 112 1_555 ? ? ? ? ? ? ? 2.038 ? disulf3 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 47 A CYS 114 1_555 ? ? ? ? ? ? ? 2.039 ? disulf4 disulf ? ? A CYS 80 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 79 A CYS 79 4_555 ? ? ? ? ? ? ? 2.032 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 12 A . ? LYS 11 A SER 13 A ? SER 12 A 1 28.20 2 TYR 35 A . ? TYR 34 A PRO 36 A ? PRO 35 A 1 -2.11 3 ASN 50 A . ? ASN 49 A PRO 51 A ? PRO 50 A 1 -3.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 16 ? HIS A 18 ? LYS A 15 HIS A 17 A 2 ARG A 43 ? GLU A 45 ? ARG A 42 GLU A 44 B 1 TYR A 21 ? ASP A 23 ? TYR A 20 ASP A 22 B 2 GLN A 38 ? ASN A 40 ? GLN A 37 ASN A 39 C 1 ILE A 33 ? TYR A 35 ? ILE A 32 TYR A 34 C 2 CYS A 80 ? LEU A 94 ? CYS A 79 LEU A 93 C 3 VAL A 100 ? ARG A 116 ? VAL A 99 ARG A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 18 ? N HIS A 17 O ARG A 43 ? O ARG A 42 B 1 2 N VAL A 22 ? N VAL A 21 O TYR A 39 ? O TYR A 38 C 1 2 N TYR A 35 ? N TYR A 34 O LEU A 92 ? O LEU A 91 C 2 3 N TYR A 93 ? N TYR A 92 O VAL A 101 ? O VAL A 100 # _atom_sites.entry_id 4N1D _atom_sites.fract_transf_matrix[1][1] 0.010464 _atom_sites.fract_transf_matrix[1][2] 0.006041 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012082 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010257 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 GLN 2 1 ? ? ? A . n A 1 3 ALA 3 2 ? ? ? A . n A 1 4 LYS 4 3 ? ? ? A . n A 1 5 HIS 5 4 ? ? ? A . n A 1 6 LYS 6 5 ? ? ? A . n A 1 7 GLN 7 6 ? ? ? A . n A 1 8 ARG 8 7 ? ? ? A . n A 1 9 LYS 9 8 ? ? ? A . n A 1 10 ARG 10 9 ? ? ? A . n A 1 11 LEU 11 10 ? ? ? A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 CYS 15 14 14 CYS CYS A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 HIS 18 17 17 HIS HIS A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 TYR 21 20 20 TYR TYR A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 PHE 24 23 23 PHE PHE A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 TRP 29 28 28 TRP TRP A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 TRP 32 31 31 TRP TRP A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 TYR 39 38 38 TYR TYR A . n A 1 40 ASN 40 39 39 ASN ASN A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 CYS 44 43 43 CYS CYS A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 CYS 48 47 47 CYS CYS A . n A 1 49 PRO 49 48 48 PRO PRO A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 PRO 51 50 50 PRO PRO A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 PHE 56 55 55 PHE PHE A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 HIS 61 60 60 HIS HIS A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 GLN 65 64 64 GLN GLN A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 GLN 72 71 71 GLN GLN A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 HIS 74 73 73 HIS HIS A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 PRO 77 76 76 PRO PRO A . n A 1 78 SER 78 77 77 SER SER A . n A 1 79 THR 79 78 78 THR THR A . n A 1 80 CYS 80 79 79 CYS CYS A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 ILE 89 88 88 ILE ILE A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 MET 91 90 90 MET MET A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 ASN 97 96 96 ASN ASN A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 ASN 104 103 103 ASN ASN A . n A 1 105 TYR 105 104 104 TYR TYR A . n A 1 106 GLN 106 105 105 GLN GLN A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 MET 108 107 107 MET MET A . n A 1 109 VAL 109 108 108 VAL VAL A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 GLU 111 110 110 GLU GLU A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 CYS 113 112 112 CYS CYS A . n A 1 114 GLY 114 113 113 GLY GLY A . n A 1 115 CYS 115 114 114 CYS CYS A . n A 1 116 ARG 116 115 115 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2970 ? 1 MORE -28 ? 1 'SSA (A^2)' 11110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 252 ? B HOH . 2 1 A HOH 267 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2014-02-05 3 'Structure model' 1 2 2017-07-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -8.2518 -22.7055 -13.4475 0.4976 0.3676 0.4010 0.0281 0.1557 0.1326 6.4131 3.4537 4.2830 -4.4813 1.3155 0.1141 0.7037 -0.6546 0.0440 1.2665 1.1698 -0.7249 -0.6630 -0.5758 -0.2625 'X-RAY DIFFRACTION' 2 ? refined 5.8878 -38.0431 -9.8317 0.3115 0.3541 0.4174 -0.0318 0.0493 -0.0731 8.7415 3.9429 2.6861 -0.5823 0.3872 0.9559 0.2920 0.0967 -0.3207 -0.4140 0.3867 -1.1056 0.3280 -0.0997 0.7709 'X-RAY DIFFRACTION' 3 ? refined -5.5108 -28.0550 -12.5681 0.3760 0.2970 0.3232 0.0061 0.0759 0.0149 8.6917 9.3906 6.1894 -8.8799 -6.1909 5.8667 0.2858 0.1717 -0.4520 -0.0395 0.8487 -0.6417 -0.3827 -0.5428 0.0630 'X-RAY DIFFRACTION' 4 ? refined -20.1226 -13.6401 -4.7348 0.5612 0.3525 0.4860 0.1183 0.1601 0.0505 6.2733 8.2066 8.3242 -4.2641 -2.8334 7.5058 0.6546 0.0002 -0.7165 0.1799 0.5821 -0.2044 -0.5515 -1.2829 0.0912 'X-RAY DIFFRACTION' 5 ? refined -24.3682 -20.8025 -6.6805 0.5834 0.5770 0.3495 0.0943 -0.0300 0.0213 9.5545 5.7572 5.1323 7.4252 -6.9718 -5.3940 -0.0894 0.1372 -0.1245 1.2668 0.8054 0.5811 -1.4376 -0.0552 -1.0843 'X-RAY DIFFRACTION' 6 ? refined -22.3346 -12.1776 4.4630 0.4579 0.3338 0.4491 -0.0028 0.1534 -0.0286 6.3158 3.9795 8.1545 -1.3734 -3.6226 -2.2687 0.7184 -0.0680 -0.5923 0.2132 1.4934 -0.1724 -0.0625 -1.3363 0.2927 'X-RAY DIFFRACTION' 7 ? refined -15.2063 -25.3933 -4.9201 0.3128 0.3743 0.2422 0.0513 -0.0096 0.0034 8.1125 4.2911 5.6324 -5.7805 -6.6664 4.8304 -0.0445 0.0888 0.1066 0.3138 -0.1553 -0.1007 -0.5300 -0.2821 -0.1853 'X-RAY DIFFRACTION' 8 ? refined -3.0915 -42.2527 -9.4209 0.3078 0.2848 0.2897 0.0062 0.0260 -0.0353 9.8005 6.0767 0.5460 -6.6838 0.4346 0.2343 0.2320 -0.0209 -0.1705 0.0459 -0.1754 -0.0414 -0.1087 0.1321 0.0797 'X-RAY DIFFRACTION' 9 ? refined 2.3743 -48.6655 -5.2054 0.3326 0.3186 0.3321 -0.0227 -0.0007 -0.0372 4.8392 5.5520 9.1305 -5.0980 2.9527 -2.7692 -0.1045 0.0882 -0.0464 -0.4659 -0.0460 0.0293 0.6132 0.2265 0.1845 'X-RAY DIFFRACTION' 10 ? refined -13.5036 -30.2317 -6.9732 0.2953 0.3187 0.2268 -0.0038 0.0434 0.0025 3.1273 8.4029 2.2367 -4.9767 -1.4848 3.1948 0.1296 -0.1629 0.0216 0.0951 -0.2306 0.4684 -0.0409 -0.0692 -0.3414 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 11 through 22 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 23 through 36 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 37 through 44 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 45 through 52 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resid 53 through 58 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 ;chain 'A' and (resid 59 through 78 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 ;chain 'A' and (resid 79 through 84 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 0 A 0 ;chain 'A' and (resid 85 through 93 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 0 A 0 ;chain 'A' and (resid 94 through 104 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 0 A 0 ;chain 'A' and (resid 105 through 115 ) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 MrBUMP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 217 ? ? O A HOH 244 ? ? 1.89 2 1 O A HOH 214 ? ? O A HOH 263 ? ? 2.07 3 1 O A HOH 202 ? ? O A HOH 264 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 245 ? ? 1_555 O A HOH 245 ? ? 2_445 1.86 2 1 O A HOH 213 ? ? 1_555 O A HOH 264 ? ? 4_555 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 12 ? ? -92.41 37.32 2 1 TYR A 41 ? ? 58.16 175.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A GLN 1 ? A GLN 2 3 1 Y 1 A ALA 2 ? A ALA 3 4 1 Y 1 A LYS 3 ? A LYS 4 5 1 Y 1 A HIS 4 ? A HIS 5 6 1 Y 1 A LYS 5 ? A LYS 6 7 1 Y 1 A GLN 6 ? A GLN 7 8 1 Y 1 A ARG 7 ? A ARG 8 9 1 Y 1 A LYS 8 ? A LYS 9 10 1 Y 1 A ARG 9 ? A ARG 10 11 1 Y 1 A LEU 10 ? A LEU 11 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #