data_4NDG # _entry.id 4NDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NDG pdb_00004ndg 10.2210/pdb4ndg/pdb NDB NA2747 ? ? RCSB RCSB083063 ? ? WWPDB D_1000083063 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SZQ . unspecified PDB 4NDF . unspecified PDB 4NDH . unspecified PDB 4NDI . unspecified # _pdbx_database_status.entry_id 4NDG _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schellenberg, M.J.' 1 'Tumbale, P.S.' 2 'Williams, R.S.' 3 # _citation.id primary _citation.title 'Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity.' _citation.journal_abbrev Nature _citation.journal_volume 506 _citation.page_first 111 _citation.page_last 115 _citation.year 2013 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24362567 _citation.pdbx_database_id_DOI 10.1038/nature12824 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tumbale, P.' 1 ? primary 'Williams, J.S.' 2 ? primary 'Schellenberg, M.J.' 3 ? primary 'Kunkel, T.A.' 4 ? primary 'Williams, R.S.' 5 ? # _cell.length_a 40.276 _cell.length_b 114.580 _cell.length_c 124.658 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4NDG _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4NDG _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Aprataxin 21259.756 2 ? ? ? ? 2 polymer syn "5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3'" 3066.014 2 ? ? ? ? 3 polymer syn "5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3'" 3037.031 2 ? ? ? ? 4 non-polymer syn "adenosine-5'-vanadate" 350.182 2 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 6 water nat water 18.015 25 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Forkhead-associated domain histidine triad-like protein, FHA-HIT' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCH ECQQLLPSIPQLKEHLRKHWTQ ; ;GSHMGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCH ECQQLLPSIPQLKEHLRKHWTQ ; A,B ? 2 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no 'G(DT)(DT)(DA)(DT)(DG)(DA)(DT)(DT)(DC)' GTTATGATTC D,G ? 3 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DT)(DC)(DA)(DT)(DA)(DA)(DC)' GAATCATAAC E,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 HIS n 1 7 TRP n 1 8 SER n 1 9 GLN n 1 10 GLY n 1 11 LEU n 1 12 LYS n 1 13 ILE n 1 14 SER n 1 15 MET n 1 16 GLN n 1 17 ASP n 1 18 PRO n 1 19 LYS n 1 20 MET n 1 21 GLN n 1 22 VAL n 1 23 TYR n 1 24 LYS n 1 25 ASP n 1 26 GLU n 1 27 GLN n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 ILE n 1 32 LYS n 1 33 ASP n 1 34 LYS n 1 35 TYR n 1 36 PRO n 1 37 LYS n 1 38 ALA n 1 39 ARG n 1 40 TYR n 1 41 HIS n 1 42 TRP n 1 43 LEU n 1 44 VAL n 1 45 LEU n 1 46 PRO n 1 47 TRP n 1 48 THR n 1 49 SER n 1 50 ILE n 1 51 SER n 1 52 SER n 1 53 LEU n 1 54 LYS n 1 55 ALA n 1 56 VAL n 1 57 ALA n 1 58 ARG n 1 59 GLU n 1 60 HIS n 1 61 LEU n 1 62 GLU n 1 63 LEU n 1 64 LEU n 1 65 LYS n 1 66 HIS n 1 67 MET n 1 68 HIS n 1 69 THR n 1 70 VAL n 1 71 GLY n 1 72 GLU n 1 73 LYS n 1 74 VAL n 1 75 ILE n 1 76 VAL n 1 77 ASP n 1 78 PHE n 1 79 ALA n 1 80 GLY n 1 81 SER n 1 82 SER n 1 83 LYS n 1 84 LEU n 1 85 ARG n 1 86 PHE n 1 87 ARG n 1 88 LEU n 1 89 GLY n 1 90 TYR n 1 91 HIS n 1 92 ALA n 1 93 ILE n 1 94 PRO n 1 95 SER n 1 96 MET n 1 97 SER n 1 98 HIS n 1 99 VAL n 1 100 HIS n 1 101 LEU n 1 102 HIS n 1 103 VAL n 1 104 ILE n 1 105 SER n 1 106 GLN n 1 107 ASP n 1 108 PHE n 1 109 ASP n 1 110 SER n 1 111 PRO n 1 112 CYS n 1 113 LEU n 1 114 LYS n 1 115 ASN n 1 116 LYS n 1 117 LYS n 1 118 HIS n 1 119 TRP n 1 120 ASN n 1 121 SER n 1 122 PHE n 1 123 ASN n 1 124 THR n 1 125 GLU n 1 126 TYR n 1 127 PHE n 1 128 LEU n 1 129 GLU n 1 130 SER n 1 131 GLN n 1 132 ALA n 1 133 VAL n 1 134 ILE n 1 135 GLU n 1 136 MET n 1 137 VAL n 1 138 GLN n 1 139 GLU n 1 140 ALA n 1 141 GLY n 1 142 ARG n 1 143 VAL n 1 144 THR n 1 145 VAL n 1 146 ARG n 1 147 ASP n 1 148 GLY n 1 149 MET n 1 150 PRO n 1 151 GLU n 1 152 LEU n 1 153 LEU n 1 154 LYS n 1 155 LEU n 1 156 PRO n 1 157 LEU n 1 158 ARG n 1 159 CYS n 1 160 HIS n 1 161 GLU n 1 162 CYS n 1 163 GLN n 1 164 GLN n 1 165 LEU n 1 166 LEU n 1 167 PRO n 1 168 SER n 1 169 ILE n 1 170 PRO n 1 171 GLN n 1 172 LEU n 1 173 LYS n 1 174 GLU n 1 175 HIS n 1 176 LEU n 1 177 ARG n 1 178 LYS n 1 179 HIS n 1 180 TRP n 1 181 THR n 1 182 GLN n 2 1 G n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DT n 2 10 DC n 3 1 DG n 3 2 DA n 3 3 DA n 3 4 DT n 3 5 DC n 3 6 DA n 3 7 DT n 3 8 DA n 3 9 DA n 3 10 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APTX, AXA1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP APTX_HUMAN Q7Z2E3 1 ;GHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKL RFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQ LLPSIPQLKEHLRKHWTQ ; 179 ? 2 PDB 4NDG 4NDG 2 GTTATGATTC 1 ? 3 PDB 4NDG 4NDG 3 GAATCATAAC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NDG A 5 ? 182 ? Q7Z2E3 179 ? 356 ? 165 342 2 1 4NDG B 5 ? 182 ? Q7Z2E3 179 ? 356 ? 165 342 3 2 4NDG D 1 ? 10 ? 4NDG 1 ? 10 ? 1 10 4 2 4NDG G 1 ? 10 ? 4NDG 1 ? 10 ? 1 10 5 3 4NDG E 1 ? 10 ? 4NDG 1 ? 10 ? 1 10 6 3 4NDG H 1 ? 10 ? 4NDG 1 ? 10 ? 1 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NDG GLY A 1 ? UNP Q7Z2E3 ? ? 'expression tag' 161 1 1 4NDG SER A 2 ? UNP Q7Z2E3 ? ? 'expression tag' 162 2 1 4NDG HIS A 3 ? UNP Q7Z2E3 ? ? 'expression tag' 163 3 1 4NDG MET A 4 ? UNP Q7Z2E3 ? ? 'expression tag' 164 4 2 4NDG GLY B 1 ? UNP Q7Z2E3 ? ? 'expression tag' 161 5 2 4NDG SER B 2 ? UNP Q7Z2E3 ? ? 'expression tag' 162 6 2 4NDG HIS B 3 ? UNP Q7Z2E3 ? ? 'expression tag' 163 7 2 4NDG MET B 4 ? UNP Q7Z2E3 ? ? 'expression tag' 164 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 V5A non-polymer . "adenosine-5'-vanadate" ? 'C10 H13 N5 O6 V' 350.182 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4NDG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '100 mM sodium formate, 20% w/v PEG3350, pH 7.5, VAPOR DIFFUSION, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2013-02-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Rosenbaum-Rock double-crystal Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 4NDG _reflns.d_resolution_high 2.541 _reflns.d_resolution_low 50.0 _reflns.number_obs 19635 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_netI_over_sigmaI 11.2 _reflns.pdbx_chi_squared 0.999 _reflns.pdbx_redundancy 4.0 _reflns.percent_possible_obs 99.3 _reflns.B_iso_Wilson_estimate 61.87 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.number_all 19773 _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.541 2.640 ? ? ? 0.582 ? ? 1.061 4.1 ? 1921 100.0 1 1 2.640 2.750 ? ? ? 0.425 ? ? 0.920 4.1 ? 1925 100.0 2 1 2.750 2.870 ? ? ? 0.284 ? ? 0.974 4.1 ? 1951 99.8 3 1 2.870 3.020 ? ? ? 0.202 ? ? 1.001 4.1 ? 1920 99.9 4 1 3.020 3.210 ? ? ? 0.115 ? ? 1.005 4.1 ? 1957 99.7 5 1 3.210 3.460 ? ? ? 0.086 ? ? 1.002 4.0 ? 1954 99.9 6 1 3.460 3.810 ? ? ? 0.082 ? ? 1.005 4.0 ? 1961 99.5 7 1 3.810 4.360 ? ? ? 0.070 ? ? 1.005 3.9 ? 1973 99.2 8 1 4.360 5.490 ? ? ? 0.063 ? ? 1.015 3.8 ? 1998 99.0 9 1 5.490 50.000 ? ? ? 0.055 ? ? 1.000 3.5 ? 2075 96.6 10 1 # _refine.entry_id 4NDG _refine.ls_d_res_high 2.541 _refine.ls_d_res_low 39.063 _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.62 _refine.ls_number_reflns_obs 19503 _refine.ls_number_reflns_all 19773 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2110 _refine.ls_R_factor_R_work 0.2084 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2599 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.14 _refine.ls_number_reflns_R_free 1002 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 88.5488 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 4NDH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7468 _refine.B_iso_max 214.610 _refine.B_iso_min 37.440 _refine.pdbx_overall_phase_error 30.5000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2921 _refine_hist.pdbx_number_atoms_nucleic_acid 818 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 3810 _refine_hist.d_res_high 2.541 _refine_hist.d_res_low 39.063 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 4000 0.015 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 5585 1.223 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 606 0.048 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 553 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1532 20.484 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.541 2.6745 7 98.0 2581 . 0.3442 0.4316 . 118 . 2699 . . 'X-RAY DIFFRACTION' 2.6745 2.8421 7 100.0 2594 . 0.3140 0.3337 . 157 . 2751 . . 'X-RAY DIFFRACTION' 2.8421 3.0614 7 100.0 2622 . 0.2882 0.3541 . 150 . 2772 . . 'X-RAY DIFFRACTION' 3.0614 3.3693 7 98.0 2645 . 0.2184 0.2726 . 129 . 2774 . . 'X-RAY DIFFRACTION' 3.3693 3.8565 7 99.0 2620 . 0.2155 0.2837 . 142 . 2762 . . 'X-RAY DIFFRACTION' 3.8565 4.8574 7 99.0 2695 . 0.1784 0.2294 . 147 . 2842 . . 'X-RAY DIFFRACTION' 4.8574 39.0679 7 97.0 2744 . 0.1717 0.2141 . 159 . 2903 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NDG _struct.title 'Human Aprataxin (Aptx) bound to RNA-DNA and Zn - adenosine vanadate transition state mimic complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NDG _struct_keywords.text ;protein-DNA complex, DNA repair, 5'-DNA end processing, Histidine Triad domain, HIT domain, Zinc finger, 5'-DNA end recognition, DNA BINDING PROTEIN-RNA-DNA complex ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/RNA/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 4 ? J N N 5 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 6 ? SER A 8 ? HIS A 166 SER A 168 5 ? 3 HELX_P HELX_P2 2 GLN A 9 ? ASP A 17 ? GLN A 169 ASP A 177 1 ? 9 HELX_P HELX_P3 3 SER A 52 ? VAL A 56 ? SER A 212 VAL A 216 5 ? 5 HELX_P HELX_P4 4 ALA A 57 ? GLU A 59 ? ALA A 217 GLU A 219 5 ? 3 HELX_P HELX_P5 5 HIS A 60 ? GLY A 80 ? HIS A 220 GLY A 240 1 ? 21 HELX_P HELX_P6 6 ASN A 115 ? THR A 124 ? ASN A 275 THR A 284 1 ? 10 HELX_P HELX_P7 7 SER A 130 ? GLY A 141 ? SER A 290 GLY A 301 1 ? 12 HELX_P HELX_P8 8 GLY A 148 ? LEU A 153 ? GLY A 308 LEU A 313 1 ? 6 HELX_P HELX_P9 9 SER A 168 ? LYS A 178 ? SER A 328 LYS A 338 1 ? 11 HELX_P HELX_P10 10 GLY B 5 ? SER B 8 ? GLY B 165 SER B 168 5 ? 4 HELX_P HELX_P11 11 GLN B 9 ? ASP B 17 ? GLN B 169 ASP B 177 1 ? 9 HELX_P HELX_P12 12 ALA B 57 ? GLU B 59 ? ALA B 217 GLU B 219 5 ? 3 HELX_P HELX_P13 13 HIS B 60 ? GLY B 80 ? HIS B 220 GLY B 240 1 ? 21 HELX_P HELX_P14 14 ASN B 115 ? THR B 124 ? ASN B 275 THR B 284 1 ? 10 HELX_P HELX_P15 15 SER B 130 ? GLY B 141 ? SER B 290 GLY B 301 1 ? 12 HELX_P HELX_P16 16 GLY B 148 ? LYS B 154 ? GLY B 308 LYS B 314 1 ? 7 HELX_P HELX_P17 17 SER B 168 ? LYS B 178 ? SER B 328 LYS B 338 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 100 NE2 ? ? ? 1_555 G V5A . V ? ? A HIS 260 A V5A 401 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc2 metalc ? ? A CYS 159 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 319 A ZN 402 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc3 metalc ? ? A CYS 162 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 322 A ZN 402 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc4 metalc ? ? A HIS 175 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 335 A ZN 402 1_555 ? ? ? ? ? ? ? 1.980 ? ? metalc5 metalc ? ? A HIS 179 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 339 A ZN 402 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc6 metalc ? ? G V5A . V ? ? ? 1_555 C G 1 OP3 ? ? A V5A 401 D G 1 1_555 ? ? ? ? ? ? ? 2.018 ? ? metalc7 metalc ? ? B HIS 100 NE2 ? ? ? 1_555 I V5A . V ? ? B HIS 260 B V5A 401 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc8 metalc ? ? B CYS 159 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 319 B ZN 402 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc9 metalc ? ? B CYS 162 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 322 B ZN 402 1_555 ? ? ? ? ? ? ? 1.927 ? ? metalc10 metalc ? ? B HIS 175 NE2 ? ? ? 1_555 J ZN . ZN ? ? B HIS 335 B ZN 402 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc11 metalc ? ? B HIS 179 NE2 ? ? ? 1_555 J ZN . ZN ? ? B HIS 339 B ZN 402 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc12 metalc ? ? I V5A . V ? ? ? 1_555 E G 1 OP3 ? ? B V5A 401 G G 1 1_555 ? ? ? ? ? ? ? 1.987 ? ? hydrog1 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 9 N1 ? ? D DT 2 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 9 N6 ? ? D DT 2 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 8 N1 ? ? D DT 3 E DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 8 N6 ? ? D DT 3 E DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 7 N3 ? ? D DA 4 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 7 O4 ? ? D DA 4 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 6 N1 ? ? D DT 5 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? D DT 5 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 5 N3 ? ? D DG 6 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 5 O2 ? ? D DG 6 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 5 N4 ? ? D DG 6 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 4 N3 ? ? D DA 7 E DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 4 O4 ? ? D DA 7 E DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? D DT 8 E DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? D DT 8 E DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 2 N1 ? ? D DT 9 E DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 2 N6 ? ? D DT 9 E DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 1 N1 ? ? D DC 10 E DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 1 O6 ? ? D DC 10 E DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 1 N2 ? ? D DC 10 E DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? E DT 2 N3 ? ? ? 1_555 F DA 9 N1 ? ? G DT 2 H DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? E DT 2 O4 ? ? ? 1_555 F DA 9 N6 ? ? G DT 2 H DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 8 N1 ? ? G DT 3 H DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 8 N6 ? ? G DT 3 H DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 7 N3 ? ? G DA 4 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 7 O4 ? ? G DA 4 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 6 N1 ? ? G DT 5 H DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 6 N6 ? ? G DT 5 H DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 5 N3 ? ? G DG 6 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 5 O2 ? ? G DG 6 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 5 N4 ? ? G DG 6 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 4 N3 ? ? G DA 7 H DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 4 O4 ? ? G DA 7 H DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 3 N1 ? ? G DT 8 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 3 N6 ? ? G DT 8 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 2 N1 ? ? G DT 9 H DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 2 N6 ? ? G DT 9 H DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DC 10 N3 ? ? ? 1_555 F DG 1 N1 ? ? G DC 10 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DC 10 N4 ? ? ? 1_555 F DG 1 O6 ? ? G DC 10 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DC 10 O2 ? ? ? 1_555 F DG 1 N2 ? ? G DC 10 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 21 ? LYS A 24 ? GLN A 181 LYS A 184 A 2 VAL A 28 ? LYS A 32 ? VAL A 188 LYS A 192 A 3 HIS A 41 ? PRO A 46 ? HIS A 201 PRO A 206 A 4 LEU A 101 ? SER A 105 ? LEU A 261 SER A 265 A 5 PHE A 86 ? HIS A 91 ? PHE A 246 HIS A 251 A 6 PHE A 127 ? GLU A 129 ? PHE A 287 GLU A 289 B 1 GLN B 21 ? LYS B 24 ? GLN B 181 LYS B 184 B 2 VAL B 28 ? LYS B 32 ? VAL B 188 LYS B 192 B 3 HIS B 41 ? PRO B 46 ? HIS B 201 PRO B 206 B 4 LEU B 101 ? SER B 105 ? LEU B 261 SER B 265 B 5 PHE B 86 ? HIS B 91 ? PHE B 246 HIS B 251 B 6 PHE B 127 ? GLU B 129 ? PHE B 287 GLU B 289 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 23 ? N TYR A 183 O VAL A 30 ? O VAL A 190 A 2 3 N ILE A 31 ? N ILE A 191 O LEU A 43 ? O LEU A 203 A 3 4 N TRP A 42 ? N TRP A 202 O VAL A 103 ? O VAL A 263 A 4 5 O HIS A 102 ? O HIS A 262 N GLY A 89 ? N GLY A 249 A 5 6 N TYR A 90 ? N TYR A 250 O LEU A 128 ? O LEU A 288 B 1 2 N TYR B 23 ? N TYR B 183 O VAL B 30 ? O VAL B 190 B 2 3 N VAL B 29 ? N VAL B 189 O LEU B 45 ? O LEU B 205 B 3 4 N TRP B 42 ? N TRP B 202 O VAL B 103 ? O VAL B 263 B 4 5 O ILE B 104 ? O ILE B 264 N ARG B 87 ? N ARG B 247 B 5 6 N TYR B 90 ? N TYR B 250 O LEU B 128 ? O LEU B 288 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A V5A 401 ? 14 'BINDING SITE FOR RESIDUE V5A A 401' AC2 Software A ZN 402 ? 4 'BINDING SITE FOR RESIDUE ZN A 402' AC3 Software B V5A 401 ? 14 'BINDING SITE FOR RESIDUE V5A B 401' AC4 Software B ZN 402 ? 4 'BINDING SITE FOR RESIDUE ZN B 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 LEU A 11 ? LEU A 171 . ? 1_555 ? 2 AC1 14 SER A 14 ? SER A 174 . ? 1_555 ? 3 AC1 14 ASP A 33 ? ASP A 193 . ? 1_555 ? 4 AC1 14 LYS A 34 ? LYS A 194 . ? 1_555 ? 5 AC1 14 TYR A 35 ? TYR A 195 . ? 1_555 ? 6 AC1 14 LYS A 37 ? LYS A 197 . ? 1_555 ? 7 AC1 14 LEU A 43 ? LEU A 203 . ? 1_555 ? 8 AC1 14 HIS A 91 ? HIS A 251 . ? 1_555 ? 9 AC1 14 SER A 95 ? SER A 255 . ? 1_555 ? 10 AC1 14 MET A 96 ? MET A 256 . ? 1_555 ? 11 AC1 14 HIS A 100 ? HIS A 260 . ? 1_555 ? 12 AC1 14 HIS A 102 ? HIS A 262 . ? 1_555 ? 13 AC1 14 HOH K . ? HOH A 501 . ? 1_555 ? 14 AC1 14 G C 1 ? G D 1 . ? 1_555 ? 15 AC2 4 CYS A 159 ? CYS A 319 . ? 1_555 ? 16 AC2 4 CYS A 162 ? CYS A 322 . ? 1_555 ? 17 AC2 4 HIS A 175 ? HIS A 335 . ? 1_555 ? 18 AC2 4 HIS A 179 ? HIS A 339 . ? 1_555 ? 19 AC3 14 LEU B 11 ? LEU B 171 . ? 1_555 ? 20 AC3 14 SER B 14 ? SER B 174 . ? 1_555 ? 21 AC3 14 ILE B 31 ? ILE B 191 . ? 1_555 ? 22 AC3 14 LYS B 32 ? LYS B 192 . ? 1_555 ? 23 AC3 14 ASP B 33 ? ASP B 193 . ? 1_555 ? 24 AC3 14 LYS B 34 ? LYS B 194 . ? 1_555 ? 25 AC3 14 LYS B 37 ? LYS B 197 . ? 1_555 ? 26 AC3 14 LEU B 43 ? LEU B 203 . ? 1_555 ? 27 AC3 14 HIS B 91 ? HIS B 251 . ? 1_555 ? 28 AC3 14 SER B 95 ? SER B 255 . ? 1_555 ? 29 AC3 14 MET B 96 ? MET B 256 . ? 1_555 ? 30 AC3 14 HIS B 100 ? HIS B 260 . ? 1_555 ? 31 AC3 14 HIS B 102 ? HIS B 262 . ? 1_555 ? 32 AC3 14 G E 1 ? G G 1 . ? 1_555 ? 33 AC4 4 CYS B 159 ? CYS B 319 . ? 1_555 ? 34 AC4 4 CYS B 162 ? CYS B 322 . ? 1_555 ? 35 AC4 4 HIS B 175 ? HIS B 335 . ? 1_555 ? 36 AC4 4 HIS B 179 ? HIS B 339 . ? 1_555 ? # _atom_sites.entry_id 4NDG _atom_sites.fract_transf_matrix[1][1] 0.024829 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008728 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008022 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S V ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 161 ? ? ? A . n A 1 2 SER 2 162 ? ? ? A . n A 1 3 HIS 3 163 ? ? ? A . n A 1 4 MET 4 164 164 MET MET A . n A 1 5 GLY 5 165 165 GLY GLY A . n A 1 6 HIS 6 166 166 HIS HIS A . n A 1 7 TRP 7 167 167 TRP TRP A . n A 1 8 SER 8 168 168 SER SER A . n A 1 9 GLN 9 169 169 GLN GLN A . n A 1 10 GLY 10 170 170 GLY GLY A . n A 1 11 LEU 11 171 171 LEU LEU A . n A 1 12 LYS 12 172 172 LYS LYS A . n A 1 13 ILE 13 173 173 ILE ILE A . n A 1 14 SER 14 174 174 SER SER A . n A 1 15 MET 15 175 175 MET MET A . n A 1 16 GLN 16 176 176 GLN GLN A . n A 1 17 ASP 17 177 177 ASP ASP A . n A 1 18 PRO 18 178 178 PRO PRO A . n A 1 19 LYS 19 179 179 LYS LYS A . n A 1 20 MET 20 180 180 MET MET A . n A 1 21 GLN 21 181 181 GLN GLN A . n A 1 22 VAL 22 182 182 VAL VAL A . n A 1 23 TYR 23 183 183 TYR TYR A . n A 1 24 LYS 24 184 184 LYS LYS A . n A 1 25 ASP 25 185 185 ASP ASP A . n A 1 26 GLU 26 186 186 GLU GLU A . n A 1 27 GLN 27 187 187 GLN GLN A . n A 1 28 VAL 28 188 188 VAL VAL A . n A 1 29 VAL 29 189 189 VAL VAL A . n A 1 30 VAL 30 190 190 VAL VAL A . n A 1 31 ILE 31 191 191 ILE ILE A . n A 1 32 LYS 32 192 192 LYS LYS A . n A 1 33 ASP 33 193 193 ASP ASP A . n A 1 34 LYS 34 194 194 LYS LYS A . n A 1 35 TYR 35 195 195 TYR TYR A . n A 1 36 PRO 36 196 196 PRO PRO A . n A 1 37 LYS 37 197 197 LYS LYS A . n A 1 38 ALA 38 198 198 ALA ALA A . n A 1 39 ARG 39 199 199 ARG ARG A . n A 1 40 TYR 40 200 200 TYR TYR A . n A 1 41 HIS 41 201 201 HIS HIS A . n A 1 42 TRP 42 202 202 TRP TRP A . n A 1 43 LEU 43 203 203 LEU LEU A . n A 1 44 VAL 44 204 204 VAL VAL A . n A 1 45 LEU 45 205 205 LEU LEU A . n A 1 46 PRO 46 206 206 PRO PRO A . n A 1 47 TRP 47 207 207 TRP TRP A . n A 1 48 THR 48 208 208 THR THR A . n A 1 49 SER 49 209 209 SER SER A . n A 1 50 ILE 50 210 210 ILE ILE A . n A 1 51 SER 51 211 211 SER SER A . n A 1 52 SER 52 212 212 SER SER A . n A 1 53 LEU 53 213 213 LEU LEU A . n A 1 54 LYS 54 214 214 LYS LYS A . n A 1 55 ALA 55 215 215 ALA ALA A . n A 1 56 VAL 56 216 216 VAL VAL A . n A 1 57 ALA 57 217 217 ALA ALA A . n A 1 58 ARG 58 218 218 ARG ARG A . n A 1 59 GLU 59 219 219 GLU GLU A . n A 1 60 HIS 60 220 220 HIS HIS A . n A 1 61 LEU 61 221 221 LEU LEU A . n A 1 62 GLU 62 222 222 GLU GLU A . n A 1 63 LEU 63 223 223 LEU LEU A . n A 1 64 LEU 64 224 224 LEU LEU A . n A 1 65 LYS 65 225 225 LYS LYS A . n A 1 66 HIS 66 226 226 HIS HIS A . n A 1 67 MET 67 227 227 MET MET A . n A 1 68 HIS 68 228 228 HIS HIS A . n A 1 69 THR 69 229 229 THR THR A . n A 1 70 VAL 70 230 230 VAL VAL A . n A 1 71 GLY 71 231 231 GLY GLY A . n A 1 72 GLU 72 232 232 GLU GLU A . n A 1 73 LYS 73 233 233 LYS LYS A . n A 1 74 VAL 74 234 234 VAL VAL A . n A 1 75 ILE 75 235 235 ILE ILE A . n A 1 76 VAL 76 236 236 VAL VAL A . n A 1 77 ASP 77 237 237 ASP ASP A . n A 1 78 PHE 78 238 238 PHE PHE A . n A 1 79 ALA 79 239 239 ALA ALA A . n A 1 80 GLY 80 240 240 GLY GLY A . n A 1 81 SER 81 241 241 SER SER A . n A 1 82 SER 82 242 242 SER SER A . n A 1 83 LYS 83 243 243 LYS LYS A . n A 1 84 LEU 84 244 244 LEU LEU A . n A 1 85 ARG 85 245 245 ARG ARG A . n A 1 86 PHE 86 246 246 PHE PHE A . n A 1 87 ARG 87 247 247 ARG ARG A . n A 1 88 LEU 88 248 248 LEU LEU A . n A 1 89 GLY 89 249 249 GLY GLY A . n A 1 90 TYR 90 250 250 TYR TYR A . n A 1 91 HIS 91 251 251 HIS HIS A . n A 1 92 ALA 92 252 252 ALA ALA A . n A 1 93 ILE 93 253 253 ILE ILE A . n A 1 94 PRO 94 254 254 PRO PRO A . n A 1 95 SER 95 255 255 SER SER A . n A 1 96 MET 96 256 256 MET MET A . n A 1 97 SER 97 257 257 SER SER A . n A 1 98 HIS 98 258 258 HIS HIS A . n A 1 99 VAL 99 259 259 VAL VAL A . n A 1 100 HIS 100 260 260 HIS HIS A . n A 1 101 LEU 101 261 261 LEU LEU A . n A 1 102 HIS 102 262 262 HIS HIS A . n A 1 103 VAL 103 263 263 VAL VAL A . n A 1 104 ILE 104 264 264 ILE ILE A . n A 1 105 SER 105 265 265 SER SER A . n A 1 106 GLN 106 266 266 GLN GLN A . n A 1 107 ASP 107 267 267 ASP ASP A . n A 1 108 PHE 108 268 268 PHE PHE A . n A 1 109 ASP 109 269 269 ASP ASP A . n A 1 110 SER 110 270 270 SER SER A . n A 1 111 PRO 111 271 271 PRO PRO A . n A 1 112 CYS 112 272 272 CYS CYS A . n A 1 113 LEU 113 273 273 LEU LEU A . n A 1 114 LYS 114 274 274 LYS LYS A . n A 1 115 ASN 115 275 275 ASN ASN A . n A 1 116 LYS 116 276 276 LYS LYS A . n A 1 117 LYS 117 277 277 LYS LYS A . n A 1 118 HIS 118 278 278 HIS HIS A . n A 1 119 TRP 119 279 279 TRP TRP A . n A 1 120 ASN 120 280 280 ASN ASN A . n A 1 121 SER 121 281 281 SER SER A . n A 1 122 PHE 122 282 282 PHE PHE A . n A 1 123 ASN 123 283 283 ASN ASN A . n A 1 124 THR 124 284 284 THR THR A . n A 1 125 GLU 125 285 285 GLU GLU A . n A 1 126 TYR 126 286 286 TYR TYR A . n A 1 127 PHE 127 287 287 PHE PHE A . n A 1 128 LEU 128 288 288 LEU LEU A . n A 1 129 GLU 129 289 289 GLU GLU A . n A 1 130 SER 130 290 290 SER SER A . n A 1 131 GLN 131 291 291 GLN GLN A . n A 1 132 ALA 132 292 292 ALA ALA A . n A 1 133 VAL 133 293 293 VAL VAL A . n A 1 134 ILE 134 294 294 ILE ILE A . n A 1 135 GLU 135 295 295 GLU GLU A . n A 1 136 MET 136 296 296 MET MET A . n A 1 137 VAL 137 297 297 VAL VAL A . n A 1 138 GLN 138 298 298 GLN GLN A . n A 1 139 GLU 139 299 299 GLU GLU A . n A 1 140 ALA 140 300 300 ALA ALA A . n A 1 141 GLY 141 301 301 GLY GLY A . n A 1 142 ARG 142 302 302 ARG ARG A . n A 1 143 VAL 143 303 303 VAL VAL A . n A 1 144 THR 144 304 304 THR THR A . n A 1 145 VAL 145 305 305 VAL VAL A . n A 1 146 ARG 146 306 306 ARG ARG A . n A 1 147 ASP 147 307 307 ASP ASP A . n A 1 148 GLY 148 308 308 GLY GLY A . n A 1 149 MET 149 309 309 MET MET A . n A 1 150 PRO 150 310 310 PRO PRO A . n A 1 151 GLU 151 311 311 GLU GLU A . n A 1 152 LEU 152 312 312 LEU LEU A . n A 1 153 LEU 153 313 313 LEU LEU A . n A 1 154 LYS 154 314 314 LYS LYS A . n A 1 155 LEU 155 315 315 LEU LEU A . n A 1 156 PRO 156 316 316 PRO PRO A . n A 1 157 LEU 157 317 317 LEU LEU A . n A 1 158 ARG 158 318 318 ARG ARG A . n A 1 159 CYS 159 319 319 CYS CYS A . n A 1 160 HIS 160 320 320 HIS HIS A . n A 1 161 GLU 161 321 321 GLU GLU A . n A 1 162 CYS 162 322 322 CYS CYS A . n A 1 163 GLN 163 323 323 GLN GLN A . n A 1 164 GLN 164 324 324 GLN GLN A . n A 1 165 LEU 165 325 325 LEU LEU A . n A 1 166 LEU 166 326 326 LEU LEU A . n A 1 167 PRO 167 327 327 PRO PRO A . n A 1 168 SER 168 328 328 SER SER A . n A 1 169 ILE 169 329 329 ILE ILE A . n A 1 170 PRO 170 330 330 PRO PRO A . n A 1 171 GLN 171 331 331 GLN GLN A . n A 1 172 LEU 172 332 332 LEU LEU A . n A 1 173 LYS 173 333 333 LYS LYS A . n A 1 174 GLU 174 334 334 GLU GLU A . n A 1 175 HIS 175 335 335 HIS HIS A . n A 1 176 LEU 176 336 336 LEU LEU A . n A 1 177 ARG 177 337 337 ARG ARG A . n A 1 178 LYS 178 338 338 LYS LYS A . n A 1 179 HIS 179 339 339 HIS HIS A . n A 1 180 TRP 180 340 340 TRP TRP A . n A 1 181 THR 181 341 341 THR THR A . n A 1 182 GLN 182 342 ? ? ? A . n B 1 1 GLY 1 161 ? ? ? B . n B 1 2 SER 2 162 ? ? ? B . n B 1 3 HIS 3 163 ? ? ? B . n B 1 4 MET 4 164 164 MET MET B . n B 1 5 GLY 5 165 165 GLY GLY B . n B 1 6 HIS 6 166 166 HIS HIS B . n B 1 7 TRP 7 167 167 TRP TRP B . n B 1 8 SER 8 168 168 SER SER B . n B 1 9 GLN 9 169 169 GLN GLN B . n B 1 10 GLY 10 170 170 GLY GLY B . n B 1 11 LEU 11 171 171 LEU LEU B . n B 1 12 LYS 12 172 172 LYS LYS B . n B 1 13 ILE 13 173 173 ILE ILE B . n B 1 14 SER 14 174 174 SER SER B . n B 1 15 MET 15 175 175 MET MET B . n B 1 16 GLN 16 176 176 GLN GLN B . n B 1 17 ASP 17 177 177 ASP ASP B . n B 1 18 PRO 18 178 178 PRO PRO B . n B 1 19 LYS 19 179 179 LYS LYS B . n B 1 20 MET 20 180 180 MET MET B . n B 1 21 GLN 21 181 181 GLN GLN B . n B 1 22 VAL 22 182 182 VAL VAL B . n B 1 23 TYR 23 183 183 TYR TYR B . n B 1 24 LYS 24 184 184 LYS LYS B . n B 1 25 ASP 25 185 185 ASP ASP B . n B 1 26 GLU 26 186 186 GLU GLU B . n B 1 27 GLN 27 187 187 GLN GLN B . n B 1 28 VAL 28 188 188 VAL VAL B . n B 1 29 VAL 29 189 189 VAL VAL B . n B 1 30 VAL 30 190 190 VAL VAL B . n B 1 31 ILE 31 191 191 ILE ILE B . n B 1 32 LYS 32 192 192 LYS LYS B . n B 1 33 ASP 33 193 193 ASP ASP B . n B 1 34 LYS 34 194 194 LYS LYS B . n B 1 35 TYR 35 195 195 TYR TYR B . n B 1 36 PRO 36 196 196 PRO PRO B . n B 1 37 LYS 37 197 197 LYS LYS B . n B 1 38 ALA 38 198 198 ALA ALA B . n B 1 39 ARG 39 199 199 ARG ARG B . n B 1 40 TYR 40 200 200 TYR TYR B . n B 1 41 HIS 41 201 201 HIS HIS B . n B 1 42 TRP 42 202 202 TRP TRP B . n B 1 43 LEU 43 203 203 LEU LEU B . n B 1 44 VAL 44 204 204 VAL VAL B . n B 1 45 LEU 45 205 205 LEU LEU B . n B 1 46 PRO 46 206 206 PRO PRO B . n B 1 47 TRP 47 207 207 TRP TRP B . n B 1 48 THR 48 208 208 THR THR B . n B 1 49 SER 49 209 209 SER SER B . n B 1 50 ILE 50 210 210 ILE ILE B . n B 1 51 SER 51 211 211 SER SER B . n B 1 52 SER 52 212 212 SER SER B . n B 1 53 LEU 53 213 213 LEU LEU B . n B 1 54 LYS 54 214 214 LYS LYS B . n B 1 55 ALA 55 215 215 ALA ALA B . n B 1 56 VAL 56 216 216 VAL VAL B . n B 1 57 ALA 57 217 217 ALA ALA B . n B 1 58 ARG 58 218 218 ARG ARG B . n B 1 59 GLU 59 219 219 GLU GLU B . n B 1 60 HIS 60 220 220 HIS HIS B . n B 1 61 LEU 61 221 221 LEU LEU B . n B 1 62 GLU 62 222 222 GLU GLU B . n B 1 63 LEU 63 223 223 LEU LEU B . n B 1 64 LEU 64 224 224 LEU LEU B . n B 1 65 LYS 65 225 225 LYS LYS B . n B 1 66 HIS 66 226 226 HIS HIS B . n B 1 67 MET 67 227 227 MET MET B . n B 1 68 HIS 68 228 228 HIS HIS B . n B 1 69 THR 69 229 229 THR THR B . n B 1 70 VAL 70 230 230 VAL VAL B . n B 1 71 GLY 71 231 231 GLY GLY B . n B 1 72 GLU 72 232 232 GLU GLU B . n B 1 73 LYS 73 233 233 LYS LYS B . n B 1 74 VAL 74 234 234 VAL VAL B . n B 1 75 ILE 75 235 235 ILE ILE B . n B 1 76 VAL 76 236 236 VAL VAL B . n B 1 77 ASP 77 237 237 ASP ASP B . n B 1 78 PHE 78 238 238 PHE PHE B . n B 1 79 ALA 79 239 239 ALA ALA B . n B 1 80 GLY 80 240 240 GLY GLY B . n B 1 81 SER 81 241 241 SER SER B . n B 1 82 SER 82 242 242 SER SER B . n B 1 83 LYS 83 243 243 LYS LYS B . n B 1 84 LEU 84 244 244 LEU LEU B . n B 1 85 ARG 85 245 245 ARG ARG B . n B 1 86 PHE 86 246 246 PHE PHE B . n B 1 87 ARG 87 247 247 ARG ARG B . n B 1 88 LEU 88 248 248 LEU LEU B . n B 1 89 GLY 89 249 249 GLY GLY B . n B 1 90 TYR 90 250 250 TYR TYR B . n B 1 91 HIS 91 251 251 HIS HIS B . n B 1 92 ALA 92 252 252 ALA ALA B . n B 1 93 ILE 93 253 253 ILE ILE B . n B 1 94 PRO 94 254 254 PRO PRO B . n B 1 95 SER 95 255 255 SER SER B . n B 1 96 MET 96 256 256 MET MET B . n B 1 97 SER 97 257 257 SER SER B . n B 1 98 HIS 98 258 258 HIS HIS B . n B 1 99 VAL 99 259 259 VAL VAL B . n B 1 100 HIS 100 260 260 HIS HIS B . n B 1 101 LEU 101 261 261 LEU LEU B . n B 1 102 HIS 102 262 262 HIS HIS B . n B 1 103 VAL 103 263 263 VAL VAL B . n B 1 104 ILE 104 264 264 ILE ILE B . n B 1 105 SER 105 265 265 SER SER B . n B 1 106 GLN 106 266 266 GLN GLN B . n B 1 107 ASP 107 267 267 ASP ASP B . n B 1 108 PHE 108 268 268 PHE PHE B . n B 1 109 ASP 109 269 269 ASP ASP B . n B 1 110 SER 110 270 270 SER SER B . n B 1 111 PRO 111 271 271 PRO PRO B . n B 1 112 CYS 112 272 272 CYS CYS B . n B 1 113 LEU 113 273 273 LEU LEU B . n B 1 114 LYS 114 274 274 LYS LYS B . n B 1 115 ASN 115 275 275 ASN ASN B . n B 1 116 LYS 116 276 276 LYS LYS B . n B 1 117 LYS 117 277 277 LYS LYS B . n B 1 118 HIS 118 278 278 HIS HIS B . n B 1 119 TRP 119 279 279 TRP TRP B . n B 1 120 ASN 120 280 280 ASN ASN B . n B 1 121 SER 121 281 281 SER SER B . n B 1 122 PHE 122 282 282 PHE PHE B . n B 1 123 ASN 123 283 283 ASN ASN B . n B 1 124 THR 124 284 284 THR THR B . n B 1 125 GLU 125 285 285 GLU GLU B . n B 1 126 TYR 126 286 286 TYR TYR B . n B 1 127 PHE 127 287 287 PHE PHE B . n B 1 128 LEU 128 288 288 LEU LEU B . n B 1 129 GLU 129 289 289 GLU GLU B . n B 1 130 SER 130 290 290 SER SER B . n B 1 131 GLN 131 291 291 GLN GLN B . n B 1 132 ALA 132 292 292 ALA ALA B . n B 1 133 VAL 133 293 293 VAL VAL B . n B 1 134 ILE 134 294 294 ILE ILE B . n B 1 135 GLU 135 295 295 GLU GLU B . n B 1 136 MET 136 296 296 MET MET B . n B 1 137 VAL 137 297 297 VAL VAL B . n B 1 138 GLN 138 298 298 GLN GLN B . n B 1 139 GLU 139 299 299 GLU GLU B . n B 1 140 ALA 140 300 300 ALA ALA B . n B 1 141 GLY 141 301 301 GLY GLY B . n B 1 142 ARG 142 302 302 ARG ARG B . n B 1 143 VAL 143 303 303 VAL VAL B . n B 1 144 THR 144 304 304 THR THR B . n B 1 145 VAL 145 305 305 VAL VAL B . n B 1 146 ARG 146 306 306 ARG ARG B . n B 1 147 ASP 147 307 307 ASP ASP B . n B 1 148 GLY 148 308 308 GLY GLY B . n B 1 149 MET 149 309 309 MET MET B . n B 1 150 PRO 150 310 310 PRO PRO B . n B 1 151 GLU 151 311 311 GLU GLU B . n B 1 152 LEU 152 312 312 LEU LEU B . n B 1 153 LEU 153 313 313 LEU LEU B . n B 1 154 LYS 154 314 314 LYS LYS B . n B 1 155 LEU 155 315 315 LEU LEU B . n B 1 156 PRO 156 316 316 PRO PRO B . n B 1 157 LEU 157 317 317 LEU LEU B . n B 1 158 ARG 158 318 318 ARG ARG B . n B 1 159 CYS 159 319 319 CYS CYS B . n B 1 160 HIS 160 320 320 HIS HIS B . n B 1 161 GLU 161 321 321 GLU GLU B . n B 1 162 CYS 162 322 322 CYS CYS B . n B 1 163 GLN 163 323 323 GLN GLN B . n B 1 164 GLN 164 324 324 GLN GLN B . n B 1 165 LEU 165 325 325 LEU LEU B . n B 1 166 LEU 166 326 326 LEU LEU B . n B 1 167 PRO 167 327 327 PRO PRO B . n B 1 168 SER 168 328 328 SER SER B . n B 1 169 ILE 169 329 329 ILE ILE B . n B 1 170 PRO 170 330 330 PRO PRO B . n B 1 171 GLN 171 331 331 GLN GLN B . n B 1 172 LEU 172 332 332 LEU LEU B . n B 1 173 LYS 173 333 333 LYS LYS B . n B 1 174 GLU 174 334 334 GLU GLU B . n B 1 175 HIS 175 335 335 HIS HIS B . n B 1 176 LEU 176 336 336 LEU LEU B . n B 1 177 ARG 177 337 337 ARG ARG B . n B 1 178 LYS 178 338 338 LYS LYS B . n B 1 179 HIS 179 339 339 HIS HIS B . n B 1 180 TRP 180 340 340 TRP TRP B . n B 1 181 THR 181 341 ? ? ? B . n B 1 182 GLN 182 342 ? ? ? B . n C 2 1 G 1 1 1 G G D . n C 2 2 DT 2 2 2 DT DT D . n C 2 3 DT 3 3 3 DT DT D . n C 2 4 DA 4 4 4 DA DA D . n C 2 5 DT 5 5 5 DT DT D . n C 2 6 DG 6 6 6 DG DG D . n C 2 7 DA 7 7 7 DA DA D . n C 2 8 DT 8 8 8 DT DT D . n C 2 9 DT 9 9 9 DT DT D . n C 2 10 DC 10 10 10 DC DC D . n D 3 1 DG 1 1 1 DG DG E . n D 3 2 DA 2 2 2 DA DA E . n D 3 3 DA 3 3 3 DA DA E . n D 3 4 DT 4 4 4 DT DT E . n D 3 5 DC 5 5 5 DC DC E . n D 3 6 DA 6 6 6 DA DA E . n D 3 7 DT 7 7 7 DT DT E . n D 3 8 DA 8 8 8 DA DA E . n D 3 9 DA 9 9 9 DA DA E . n D 3 10 DC 10 10 10 DC DC E . n E 2 1 G 1 1 1 G G G . n E 2 2 DT 2 2 2 DT DT G . n E 2 3 DT 3 3 3 DT DT G . n E 2 4 DA 4 4 4 DA DA G . n E 2 5 DT 5 5 5 DT DT G . n E 2 6 DG 6 6 6 DG DG G . n E 2 7 DA 7 7 7 DA DA G . n E 2 8 DT 8 8 8 DT DT G . n E 2 9 DT 9 9 9 DT DT G . n E 2 10 DC 10 10 10 DC DC G . n F 3 1 DG 1 1 1 DG DG H . n F 3 2 DA 2 2 2 DA DA H . n F 3 3 DA 3 3 3 DA DA H . n F 3 4 DT 4 4 4 DT DT H . n F 3 5 DC 5 5 5 DC DC H . n F 3 6 DA 6 6 6 DA DA H . n F 3 7 DT 7 7 7 DT DT H . n F 3 8 DA 8 8 8 DA DA H . n F 3 9 DA 9 9 9 DA DA H . n F 3 10 DC 10 10 10 DC DC H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 V5A 1 401 1 V5A V5A A . H 5 ZN 1 402 1 ZN ZN A . I 4 V5A 1 401 1 V5A V5A B . J 5 ZN 1 402 1 ZN ZN B . K 6 HOH 1 501 3 HOH HOH A . K 6 HOH 2 502 4 HOH HOH A . K 6 HOH 3 503 5 HOH HOH A . K 6 HOH 4 504 10 HOH HOH A . K 6 HOH 5 505 15 HOH HOH A . K 6 HOH 6 506 17 HOH HOH A . K 6 HOH 7 507 19 HOH HOH A . K 6 HOH 8 508 21 HOH HOH A . K 6 HOH 9 509 22 HOH HOH A . K 6 HOH 10 510 24 HOH HOH A . L 6 HOH 1 501 1 HOH HOH B . L 6 HOH 2 502 7 HOH HOH B . L 6 HOH 3 503 14 HOH HOH B . L 6 HOH 4 504 18 HOH HOH B . L 6 HOH 5 505 20 HOH HOH B . L 6 HOH 6 506 23 HOH HOH B . M 6 HOH 1 101 11 HOH HOH D . M 6 HOH 2 102 12 HOH HOH D . M 6 HOH 3 103 16 HOH HOH D . N 6 HOH 1 101 13 HOH HOH E . O 6 HOH 1 101 2 HOH HOH G . O 6 HOH 2 102 6 HOH HOH G . O 6 HOH 3 103 9 HOH HOH G . P 6 HOH 1 101 8 HOH HOH H . P 6 HOH 2 102 25 HOH HOH H . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G,H,K,M,N 2 1 B,E,F,I,J,L,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1810 ? 1 MORE -19 ? 1 'SSA (A^2)' 13060 ? 2 'ABSA (A^2)' 1820 ? 2 MORE -19 ? 2 'SSA (A^2)' 12960 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 100 ? A HIS 260 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 "O5'" ? G V5A . ? A V5A 401 ? 1_555 83.5 ? 2 NE2 ? A HIS 100 ? A HIS 260 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OV2 ? G V5A . ? A V5A 401 ? 1_555 89.7 ? 3 "O5'" ? G V5A . ? A V5A 401 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OV2 ? G V5A . ? A V5A 401 ? 1_555 117.6 ? 4 NE2 ? A HIS 100 ? A HIS 260 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OV1 ? G V5A . ? A V5A 401 ? 1_555 92.8 ? 5 "O5'" ? G V5A . ? A V5A 401 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OV1 ? G V5A . ? A V5A 401 ? 1_555 121.1 ? 6 OV2 ? G V5A . ? A V5A 401 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OV1 ? G V5A . ? A V5A 401 ? 1_555 121.1 ? 7 NE2 ? A HIS 100 ? A HIS 260 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OP3 ? C G 1 ? D G 1 ? 1_555 168.5 ? 8 "O5'" ? G V5A . ? A V5A 401 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OP3 ? C G 1 ? D G 1 ? 1_555 91.3 ? 9 OV2 ? G V5A . ? A V5A 401 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OP3 ? C G 1 ? D G 1 ? 1_555 83.6 ? 10 OV1 ? G V5A . ? A V5A 401 ? 1_555 V ? G V5A . ? A V5A 401 ? 1_555 OP3 ? C G 1 ? D G 1 ? 1_555 98.6 ? 11 SG ? A CYS 159 ? A CYS 319 ? 1_555 ZN ? H ZN . ? A ZN 402 ? 1_555 SG ? A CYS 162 ? A CYS 322 ? 1_555 110.5 ? 12 SG ? A CYS 159 ? A CYS 319 ? 1_555 ZN ? H ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 175 ? A HIS 335 ? 1_555 102.5 ? 13 SG ? A CYS 162 ? A CYS 322 ? 1_555 ZN ? H ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 175 ? A HIS 335 ? 1_555 93.7 ? 14 SG ? A CYS 159 ? A CYS 319 ? 1_555 ZN ? H ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 179 ? A HIS 339 ? 1_555 112.2 ? 15 SG ? A CYS 162 ? A CYS 322 ? 1_555 ZN ? H ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 179 ? A HIS 339 ? 1_555 127.5 ? 16 NE2 ? A HIS 175 ? A HIS 335 ? 1_555 ZN ? H ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 179 ? A HIS 339 ? 1_555 105.3 ? 17 NE2 ? B HIS 100 ? B HIS 260 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 "O5'" ? I V5A . ? B V5A 401 ? 1_555 94.2 ? 18 NE2 ? B HIS 100 ? B HIS 260 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OV2 ? I V5A . ? B V5A 401 ? 1_555 86.9 ? 19 "O5'" ? I V5A . ? B V5A 401 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OV2 ? I V5A . ? B V5A 401 ? 1_555 117.3 ? 20 NE2 ? B HIS 100 ? B HIS 260 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OV1 ? I V5A . ? B V5A 401 ? 1_555 88.7 ? 21 "O5'" ? I V5A . ? B V5A 401 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OV1 ? I V5A . ? B V5A 401 ? 1_555 120.3 ? 22 OV2 ? I V5A . ? B V5A 401 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OV1 ? I V5A . ? B V5A 401 ? 1_555 122.5 ? 23 NE2 ? B HIS 100 ? B HIS 260 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OP3 ? E G 1 ? G G 1 ? 1_555 170.2 ? 24 "O5'" ? I V5A . ? B V5A 401 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OP3 ? E G 1 ? G G 1 ? 1_555 89.6 ? 25 OV2 ? I V5A . ? B V5A 401 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OP3 ? E G 1 ? G G 1 ? 1_555 83.3 ? 26 OV1 ? I V5A . ? B V5A 401 ? 1_555 V ? I V5A . ? B V5A 401 ? 1_555 OP3 ? E G 1 ? G G 1 ? 1_555 97.3 ? 27 SG ? B CYS 159 ? B CYS 319 ? 1_555 ZN ? J ZN . ? B ZN 402 ? 1_555 SG ? B CYS 162 ? B CYS 322 ? 1_555 114.4 ? 28 SG ? B CYS 159 ? B CYS 319 ? 1_555 ZN ? J ZN . ? B ZN 402 ? 1_555 NE2 ? B HIS 175 ? B HIS 335 ? 1_555 111.1 ? 29 SG ? B CYS 162 ? B CYS 322 ? 1_555 ZN ? J ZN . ? B ZN 402 ? 1_555 NE2 ? B HIS 175 ? B HIS 335 ? 1_555 89.8 ? 30 SG ? B CYS 159 ? B CYS 319 ? 1_555 ZN ? J ZN . ? B ZN 402 ? 1_555 NE2 ? B HIS 179 ? B HIS 339 ? 1_555 102.2 ? 31 SG ? B CYS 162 ? B CYS 322 ? 1_555 ZN ? J ZN . ? B ZN 402 ? 1_555 NE2 ? B HIS 179 ? B HIS 339 ? 1_555 131.0 ? 32 NE2 ? B HIS 175 ? B HIS 335 ? 1_555 ZN ? J ZN . ? B ZN 402 ? 1_555 NE2 ? B HIS 179 ? B HIS 339 ? 1_555 106.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-18 2 'Structure model' 1 1 2014-01-15 3 'Structure model' 1 2 2014-02-05 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 4 'Structure model' '_struct_ref_seq_dif.details' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -3.9355 -28.6671 -12.9645 0.6834 0.4151 0.4656 -0.0433 -0.0102 0.1306 5.0898 4.5717 5.6213 -2.2505 1.0503 -2.5831 -0.2459 0.2305 -0.0063 -0.4711 -0.6895 0.5123 1.3096 0.3484 -0.3035 'X-RAY DIFFRACTION' 2 ? refined 6.4014 -21.3060 -4.1782 1.7963 0.7610 0.5223 0.1475 -0.1066 0.1148 9.0590 4.4908 7.6537 2.9007 -7.1995 -4.9235 0.3883 0.4947 -0.6074 -0.2000 1.1440 0.0736 1.7009 -1.9365 -0.3888 'X-RAY DIFFRACTION' 3 ? refined 7.7793 -26.0082 -18.3620 0.6447 0.5458 0.4140 0.0679 -0.0831 -0.0131 6.3100 6.2665 8.2792 -0.3625 3.1059 -0.4257 -0.2148 0.2292 -0.0778 0.2910 -0.2323 -0.5465 0.4668 0.2247 0.9253 'X-RAY DIFFRACTION' 4 ? refined 7.5859 -17.5668 -31.6528 0.9651 0.9004 0.5834 -0.2886 0.0227 0.1383 2.8566 8.8513 5.6575 -2.7969 0.6190 -1.7838 -0.3827 0.0574 0.3357 1.0120 0.3380 -0.5889 -1.1238 -0.7232 1.7550 'X-RAY DIFFRACTION' 5 ? refined -10.0358 -6.8902 -29.0292 1.0876 0.5962 0.5017 -0.0675 -0.1979 0.0404 4.3739 9.0614 4.8860 -1.1110 -0.7484 -5.0885 0.0809 0.6229 -0.7570 0.4845 0.1762 0.4645 -0.8814 -0.5498 -0.5459 'X-RAY DIFFRACTION' 6 ? refined -9.8548 -6.1317 -28.8061 1.2119 0.5343 0.5369 -0.1448 -0.1946 0.1004 4.2702 1.6256 6.7163 -2.4555 -2.4450 2.2639 0.0008 0.3827 -0.2776 0.2499 0.4638 0.1166 -0.6544 0.1725 0.4710 'X-RAY DIFFRACTION' 7 ? refined 5.9849 8.9778 -15.8088 1.1650 0.7827 1.2538 0.3808 -0.8524 -0.5482 0.3127 4.0631 0.6006 -0.9045 0.1073 -1.1101 1.6525 -0.4548 1.1223 1.0003 -0.9882 2.8870 -2.5907 0.8888 -0.2155 'X-RAY DIFFRACTION' 8 ? refined 15.2174 16.3287 -25.7886 1.8155 2.4571 0.8691 0.7763 -0.5084 0.0671 6.6337 3.7010 6.3598 1.0390 5.1066 3.1001 0.0451 -0.5985 1.2251 1.8181 -0.0898 0.0929 -1.9379 0.6493 3.4069 'X-RAY DIFFRACTION' 9 ? refined 8.3898 19.0411 -12.1237 0.7455 0.6794 1.1127 0.4743 -0.4928 -0.2997 4.3517 4.8381 1.3695 -1.4461 1.6175 -1.9863 0.5455 -0.8726 0.0438 0.1555 0.5197 1.6390 -2.1342 -0.0486 -0.0577 'X-RAY DIFFRACTION' 10 ? refined 18.9637 21.6587 -3.9872 0.5679 0.5765 0.9686 0.1144 -0.1191 -0.0621 7.3209 9.4159 2.9188 -3.8482 3.1992 -2.2381 -0.1561 -0.6004 0.5366 0.0885 1.4818 -0.7443 0.6416 -1.1200 0.5304 'X-RAY DIFFRACTION' 11 ? refined 25.3795 0.2253 1.4662 1.0820 0.9128 0.5808 0.3860 -0.0714 -0.1389 5.9870 5.7865 7.1125 -1.3915 3.3800 -2.3633 0.9961 0.1219 -0.9167 -0.7945 -0.5894 0.5469 0.3154 1.0068 0.8213 'X-RAY DIFFRACTION' 12 ? refined 26.2522 0.3284 0.9365 1.0664 1.0195 0.5011 0.2027 -0.0363 0.0076 1.9657 4.3156 9.5090 -1.4068 -2.2978 6.1967 0.2661 0.3009 -0.4558 -0.8377 -0.0560 0.0671 0.0551 0.7190 0.5928 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 164 through 206 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 207 through 217 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 218 through 300 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 301 through 340 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 D 0 D 0 ;chain 'D' and (resid 1 through 10 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 E 0 E 0 ;chain 'E' and (resid 1 through 10 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 0 B 0 ;chain 'B' and (resid 164 through 206 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 0 B 0 ;chain 'B' and (resid 207 through 217 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 0 B 0 ;chain 'B' and (resid 218 through 275 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 0 B 0 ;chain 'B' and (resid 276 through 340 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 G 0 G 0 ;chain 'G' and (resid 1 through 10 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 H 0 H 0 ;chain 'H' and (resid 1 through 10 ) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SERGUI . ? ? ? ? 'data collection' ? ? ? 6 PHENIX 1.8.2_1309 ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 215 ? ? -92.20 57.27 2 1 ALA A 239 ? ? -149.38 23.81 3 1 HIS A 258 ? ? 79.61 117.75 4 1 GLU A 321 ? ? -100.41 -62.03 5 1 SER B 211 ? ? -103.59 -83.36 6 1 ALA B 239 ? ? -150.89 23.53 7 1 HIS B 258 ? ? 79.45 118.67 8 1 GLU B 321 ? ? -108.71 -65.72 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 161 ? A GLY 1 2 1 Y 1 A SER 162 ? A SER 2 3 1 Y 1 A HIS 163 ? A HIS 3 4 1 Y 1 A GLN 342 ? A GLN 182 5 1 Y 1 B GLY 161 ? B GLY 1 6 1 Y 1 B SER 162 ? B SER 2 7 1 Y 1 B HIS 163 ? B HIS 3 8 1 Y 1 B THR 341 ? B THR 181 9 1 Y 1 B GLN 342 ? B GLN 182 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 G OP3 O N N 231 G P P N N 232 G OP1 O N N 233 G OP2 O N N 234 G "O5'" O N N 235 G "C5'" C N N 236 G "C4'" C N R 237 G "O4'" O N N 238 G "C3'" C N S 239 G "O3'" O N N 240 G "C2'" C N R 241 G "O2'" O N N 242 G "C1'" C N R 243 G N9 N Y N 244 G C8 C Y N 245 G N7 N Y N 246 G C5 C Y N 247 G C6 C N N 248 G O6 O N N 249 G N1 N N N 250 G C2 C N N 251 G N2 N N N 252 G N3 N N N 253 G C4 C Y N 254 G HOP3 H N N 255 G HOP2 H N N 256 G "H5'" H N N 257 G "H5''" H N N 258 G "H4'" H N N 259 G "H3'" H N N 260 G "HO3'" H N N 261 G "H2'" H N N 262 G "HO2'" H N N 263 G "H1'" H N N 264 G H8 H N N 265 G H1 H N N 266 G H21 H N N 267 G H22 H N N 268 GLN N N N N 269 GLN CA C N S 270 GLN C C N N 271 GLN O O N N 272 GLN CB C N N 273 GLN CG C N N 274 GLN CD C N N 275 GLN OE1 O N N 276 GLN NE2 N N N 277 GLN OXT O N N 278 GLN H H N N 279 GLN H2 H N N 280 GLN HA H N N 281 GLN HB2 H N N 282 GLN HB3 H N N 283 GLN HG2 H N N 284 GLN HG3 H N N 285 GLN HE21 H N N 286 GLN HE22 H N N 287 GLN HXT H N N 288 GLU N N N N 289 GLU CA C N S 290 GLU C C N N 291 GLU O O N N 292 GLU CB C N N 293 GLU CG C N N 294 GLU CD C N N 295 GLU OE1 O N N 296 GLU OE2 O N N 297 GLU OXT O N N 298 GLU H H N N 299 GLU H2 H N N 300 GLU HA H N N 301 GLU HB2 H N N 302 GLU HB3 H N N 303 GLU HG2 H N N 304 GLU HG3 H N N 305 GLU HE2 H N N 306 GLU HXT H N N 307 GLY N N N N 308 GLY CA C N N 309 GLY C C N N 310 GLY O O N N 311 GLY OXT O N N 312 GLY H H N N 313 GLY H2 H N N 314 GLY HA2 H N N 315 GLY HA3 H N N 316 GLY HXT H N N 317 HIS N N N N 318 HIS CA C N S 319 HIS C C N N 320 HIS O O N N 321 HIS CB C N N 322 HIS CG C Y N 323 HIS ND1 N Y N 324 HIS CD2 C Y N 325 HIS CE1 C Y N 326 HIS NE2 N Y N 327 HIS OXT O N N 328 HIS H H N N 329 HIS H2 H N N 330 HIS HA H N N 331 HIS HB2 H N N 332 HIS HB3 H N N 333 HIS HD1 H N N 334 HIS HD2 H N N 335 HIS HE1 H N N 336 HIS HE2 H N N 337 HIS HXT H N N 338 HOH O O N N 339 HOH H1 H N N 340 HOH H2 H N N 341 ILE N N N N 342 ILE CA C N S 343 ILE C C N N 344 ILE O O N N 345 ILE CB C N S 346 ILE CG1 C N N 347 ILE CG2 C N N 348 ILE CD1 C N N 349 ILE OXT O N N 350 ILE H H N N 351 ILE H2 H N N 352 ILE HA H N N 353 ILE HB H N N 354 ILE HG12 H N N 355 ILE HG13 H N N 356 ILE HG21 H N N 357 ILE HG22 H N N 358 ILE HG23 H N N 359 ILE HD11 H N N 360 ILE HD12 H N N 361 ILE HD13 H N N 362 ILE HXT H N N 363 LEU N N N N 364 LEU CA C N S 365 LEU C C N N 366 LEU O O N N 367 LEU CB C N N 368 LEU CG C N N 369 LEU CD1 C N N 370 LEU CD2 C N N 371 LEU OXT O N N 372 LEU H H N N 373 LEU H2 H N N 374 LEU HA H N N 375 LEU HB2 H N N 376 LEU HB3 H N N 377 LEU HG H N N 378 LEU HD11 H N N 379 LEU HD12 H N N 380 LEU HD13 H N N 381 LEU HD21 H N N 382 LEU HD22 H N N 383 LEU HD23 H N N 384 LEU HXT H N N 385 LYS N N N N 386 LYS CA C N S 387 LYS C C N N 388 LYS O O N N 389 LYS CB C N N 390 LYS CG C N N 391 LYS CD C N N 392 LYS CE C N N 393 LYS NZ N N N 394 LYS OXT O N N 395 LYS H H N N 396 LYS H2 H N N 397 LYS HA H N N 398 LYS HB2 H N N 399 LYS HB3 H N N 400 LYS HG2 H N N 401 LYS HG3 H N N 402 LYS HD2 H N N 403 LYS HD3 H N N 404 LYS HE2 H N N 405 LYS HE3 H N N 406 LYS HZ1 H N N 407 LYS HZ2 H N N 408 LYS HZ3 H N N 409 LYS HXT H N N 410 MET N N N N 411 MET CA C N S 412 MET C C N N 413 MET O O N N 414 MET CB C N N 415 MET CG C N N 416 MET SD S N N 417 MET CE C N N 418 MET OXT O N N 419 MET H H N N 420 MET H2 H N N 421 MET HA H N N 422 MET HB2 H N N 423 MET HB3 H N N 424 MET HG2 H N N 425 MET HG3 H N N 426 MET HE1 H N N 427 MET HE2 H N N 428 MET HE3 H N N 429 MET HXT H N N 430 PHE N N N N 431 PHE CA C N S 432 PHE C C N N 433 PHE O O N N 434 PHE CB C N N 435 PHE CG C Y N 436 PHE CD1 C Y N 437 PHE CD2 C Y N 438 PHE CE1 C Y N 439 PHE CE2 C Y N 440 PHE CZ C Y N 441 PHE OXT O N N 442 PHE H H N N 443 PHE H2 H N N 444 PHE HA H N N 445 PHE HB2 H N N 446 PHE HB3 H N N 447 PHE HD1 H N N 448 PHE HD2 H N N 449 PHE HE1 H N N 450 PHE HE2 H N N 451 PHE HZ H N N 452 PHE HXT H N N 453 PRO N N N N 454 PRO CA C N S 455 PRO C C N N 456 PRO O O N N 457 PRO CB C N N 458 PRO CG C N N 459 PRO CD C N N 460 PRO OXT O N N 461 PRO H H N N 462 PRO HA H N N 463 PRO HB2 H N N 464 PRO HB3 H N N 465 PRO HG2 H N N 466 PRO HG3 H N N 467 PRO HD2 H N N 468 PRO HD3 H N N 469 PRO HXT H N N 470 SER N N N N 471 SER CA C N S 472 SER C C N N 473 SER O O N N 474 SER CB C N N 475 SER OG O N N 476 SER OXT O N N 477 SER H H N N 478 SER H2 H N N 479 SER HA H N N 480 SER HB2 H N N 481 SER HB3 H N N 482 SER HG H N N 483 SER HXT H N N 484 THR N N N N 485 THR CA C N S 486 THR C C N N 487 THR O O N N 488 THR CB C N R 489 THR OG1 O N N 490 THR CG2 C N N 491 THR OXT O N N 492 THR H H N N 493 THR H2 H N N 494 THR HA H N N 495 THR HB H N N 496 THR HG1 H N N 497 THR HG21 H N N 498 THR HG22 H N N 499 THR HG23 H N N 500 THR HXT H N N 501 TRP N N N N 502 TRP CA C N S 503 TRP C C N N 504 TRP O O N N 505 TRP CB C N N 506 TRP CG C Y N 507 TRP CD1 C Y N 508 TRP CD2 C Y N 509 TRP NE1 N Y N 510 TRP CE2 C Y N 511 TRP CE3 C Y N 512 TRP CZ2 C Y N 513 TRP CZ3 C Y N 514 TRP CH2 C Y N 515 TRP OXT O N N 516 TRP H H N N 517 TRP H2 H N N 518 TRP HA H N N 519 TRP HB2 H N N 520 TRP HB3 H N N 521 TRP HD1 H N N 522 TRP HE1 H N N 523 TRP HE3 H N N 524 TRP HZ2 H N N 525 TRP HZ3 H N N 526 TRP HH2 H N N 527 TRP HXT H N N 528 TYR N N N N 529 TYR CA C N S 530 TYR C C N N 531 TYR O O N N 532 TYR CB C N N 533 TYR CG C Y N 534 TYR CD1 C Y N 535 TYR CD2 C Y N 536 TYR CE1 C Y N 537 TYR CE2 C Y N 538 TYR CZ C Y N 539 TYR OH O N N 540 TYR OXT O N N 541 TYR H H N N 542 TYR H2 H N N 543 TYR HA H N N 544 TYR HB2 H N N 545 TYR HB3 H N N 546 TYR HD1 H N N 547 TYR HD2 H N N 548 TYR HE1 H N N 549 TYR HE2 H N N 550 TYR HH H N N 551 TYR HXT H N N 552 V5A OV2 O N N 553 V5A V V N N 554 V5A OV1 O N N 555 V5A "O5'" O N N 556 V5A "C5'" C N N 557 V5A "C4'" C N R 558 V5A "C3'" C N S 559 V5A "O3'" O N N 560 V5A "C2'" C N R 561 V5A "O2'" O N N 562 V5A "C1'" C N R 563 V5A "O4'" O N N 564 V5A N9 N Y N 565 V5A C4 C Y N 566 V5A C5 C Y N 567 V5A N7 N Y N 568 V5A C8 C Y N 569 V5A N3 N Y N 570 V5A C2 C Y N 571 V5A N1 N Y N 572 V5A C6 C Y N 573 V5A N6 N N N 574 V5A H1 H N N 575 V5A H2 H N N 576 V5A H3 H N N 577 V5A H4 H N N 578 V5A H5 H N N 579 V5A H6 H N N 580 V5A H7 H N N 581 V5A H8 H N N 582 V5A H9 H N N 583 V5A H10 H N N 584 V5A H11 H N N 585 V5A H12 H N N 586 V5A H13 H N N 587 VAL N N N N 588 VAL CA C N S 589 VAL C C N N 590 VAL O O N N 591 VAL CB C N N 592 VAL CG1 C N N 593 VAL CG2 C N N 594 VAL OXT O N N 595 VAL H H N N 596 VAL H2 H N N 597 VAL HA H N N 598 VAL HB H N N 599 VAL HG11 H N N 600 VAL HG12 H N N 601 VAL HG13 H N N 602 VAL HG21 H N N 603 VAL HG22 H N N 604 VAL HG23 H N N 605 VAL HXT H N N 606 ZN ZN ZN N N 607 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 G OP3 P sing N N 232 G OP3 HOP3 sing N N 233 G P OP1 doub N N 234 G P OP2 sing N N 235 G P "O5'" sing N N 236 G OP2 HOP2 sing N N 237 G "O5'" "C5'" sing N N 238 G "C5'" "C4'" sing N N 239 G "C5'" "H5'" sing N N 240 G "C5'" "H5''" sing N N 241 G "C4'" "O4'" sing N N 242 G "C4'" "C3'" sing N N 243 G "C4'" "H4'" sing N N 244 G "O4'" "C1'" sing N N 245 G "C3'" "O3'" sing N N 246 G "C3'" "C2'" sing N N 247 G "C3'" "H3'" sing N N 248 G "O3'" "HO3'" sing N N 249 G "C2'" "O2'" sing N N 250 G "C2'" "C1'" sing N N 251 G "C2'" "H2'" sing N N 252 G "O2'" "HO2'" sing N N 253 G "C1'" N9 sing N N 254 G "C1'" "H1'" sing N N 255 G N9 C8 sing Y N 256 G N9 C4 sing Y N 257 G C8 N7 doub Y N 258 G C8 H8 sing N N 259 G N7 C5 sing Y N 260 G C5 C6 sing N N 261 G C5 C4 doub Y N 262 G C6 O6 doub N N 263 G C6 N1 sing N N 264 G N1 C2 sing N N 265 G N1 H1 sing N N 266 G C2 N2 sing N N 267 G C2 N3 doub N N 268 G N2 H21 sing N N 269 G N2 H22 sing N N 270 G N3 C4 sing N N 271 GLN N CA sing N N 272 GLN N H sing N N 273 GLN N H2 sing N N 274 GLN CA C sing N N 275 GLN CA CB sing N N 276 GLN CA HA sing N N 277 GLN C O doub N N 278 GLN C OXT sing N N 279 GLN CB CG sing N N 280 GLN CB HB2 sing N N 281 GLN CB HB3 sing N N 282 GLN CG CD sing N N 283 GLN CG HG2 sing N N 284 GLN CG HG3 sing N N 285 GLN CD OE1 doub N N 286 GLN CD NE2 sing N N 287 GLN NE2 HE21 sing N N 288 GLN NE2 HE22 sing N N 289 GLN OXT HXT sing N N 290 GLU N CA sing N N 291 GLU N H sing N N 292 GLU N H2 sing N N 293 GLU CA C sing N N 294 GLU CA CB sing N N 295 GLU CA HA sing N N 296 GLU C O doub N N 297 GLU C OXT sing N N 298 GLU CB CG sing N N 299 GLU CB HB2 sing N N 300 GLU CB HB3 sing N N 301 GLU CG CD sing N N 302 GLU CG HG2 sing N N 303 GLU CG HG3 sing N N 304 GLU CD OE1 doub N N 305 GLU CD OE2 sing N N 306 GLU OE2 HE2 sing N N 307 GLU OXT HXT sing N N 308 GLY N CA sing N N 309 GLY N H sing N N 310 GLY N H2 sing N N 311 GLY CA C sing N N 312 GLY CA HA2 sing N N 313 GLY CA HA3 sing N N 314 GLY C O doub N N 315 GLY C OXT sing N N 316 GLY OXT HXT sing N N 317 HIS N CA sing N N 318 HIS N H sing N N 319 HIS N H2 sing N N 320 HIS CA C sing N N 321 HIS CA CB sing N N 322 HIS CA HA sing N N 323 HIS C O doub N N 324 HIS C OXT sing N N 325 HIS CB CG sing N N 326 HIS CB HB2 sing N N 327 HIS CB HB3 sing N N 328 HIS CG ND1 sing Y N 329 HIS CG CD2 doub Y N 330 HIS ND1 CE1 doub Y N 331 HIS ND1 HD1 sing N N 332 HIS CD2 NE2 sing Y N 333 HIS CD2 HD2 sing N N 334 HIS CE1 NE2 sing Y N 335 HIS CE1 HE1 sing N N 336 HIS NE2 HE2 sing N N 337 HIS OXT HXT sing N N 338 HOH O H1 sing N N 339 HOH O H2 sing N N 340 ILE N CA sing N N 341 ILE N H sing N N 342 ILE N H2 sing N N 343 ILE CA C sing N N 344 ILE CA CB sing N N 345 ILE CA HA sing N N 346 ILE C O doub N N 347 ILE C OXT sing N N 348 ILE CB CG1 sing N N 349 ILE CB CG2 sing N N 350 ILE CB HB sing N N 351 ILE CG1 CD1 sing N N 352 ILE CG1 HG12 sing N N 353 ILE CG1 HG13 sing N N 354 ILE CG2 HG21 sing N N 355 ILE CG2 HG22 sing N N 356 ILE CG2 HG23 sing N N 357 ILE CD1 HD11 sing N N 358 ILE CD1 HD12 sing N N 359 ILE CD1 HD13 sing N N 360 ILE OXT HXT sing N N 361 LEU N CA sing N N 362 LEU N H sing N N 363 LEU N H2 sing N N 364 LEU CA C sing N N 365 LEU CA CB sing N N 366 LEU CA HA sing N N 367 LEU C O doub N N 368 LEU C OXT sing N N 369 LEU CB CG sing N N 370 LEU CB HB2 sing N N 371 LEU CB HB3 sing N N 372 LEU CG CD1 sing N N 373 LEU CG CD2 sing N N 374 LEU CG HG sing N N 375 LEU CD1 HD11 sing N N 376 LEU CD1 HD12 sing N N 377 LEU CD1 HD13 sing N N 378 LEU CD2 HD21 sing N N 379 LEU CD2 HD22 sing N N 380 LEU CD2 HD23 sing N N 381 LEU OXT HXT sing N N 382 LYS N CA sing N N 383 LYS N H sing N N 384 LYS N H2 sing N N 385 LYS CA C sing N N 386 LYS CA CB sing N N 387 LYS CA HA sing N N 388 LYS C O doub N N 389 LYS C OXT sing N N 390 LYS CB CG sing N N 391 LYS CB HB2 sing N N 392 LYS CB HB3 sing N N 393 LYS CG CD sing N N 394 LYS CG HG2 sing N N 395 LYS CG HG3 sing N N 396 LYS CD CE sing N N 397 LYS CD HD2 sing N N 398 LYS CD HD3 sing N N 399 LYS CE NZ sing N N 400 LYS CE HE2 sing N N 401 LYS CE HE3 sing N N 402 LYS NZ HZ1 sing N N 403 LYS NZ HZ2 sing N N 404 LYS NZ HZ3 sing N N 405 LYS OXT HXT sing N N 406 MET N CA sing N N 407 MET N H sing N N 408 MET N H2 sing N N 409 MET CA C sing N N 410 MET CA CB sing N N 411 MET CA HA sing N N 412 MET C O doub N N 413 MET C OXT sing N N 414 MET CB CG sing N N 415 MET CB HB2 sing N N 416 MET CB HB3 sing N N 417 MET CG SD sing N N 418 MET CG HG2 sing N N 419 MET CG HG3 sing N N 420 MET SD CE sing N N 421 MET CE HE1 sing N N 422 MET CE HE2 sing N N 423 MET CE HE3 sing N N 424 MET OXT HXT sing N N 425 PHE N CA sing N N 426 PHE N H sing N N 427 PHE N H2 sing N N 428 PHE CA C sing N N 429 PHE CA CB sing N N 430 PHE CA HA sing N N 431 PHE C O doub N N 432 PHE C OXT sing N N 433 PHE CB CG sing N N 434 PHE CB HB2 sing N N 435 PHE CB HB3 sing N N 436 PHE CG CD1 doub Y N 437 PHE CG CD2 sing Y N 438 PHE CD1 CE1 sing Y N 439 PHE CD1 HD1 sing N N 440 PHE CD2 CE2 doub Y N 441 PHE CD2 HD2 sing N N 442 PHE CE1 CZ doub Y N 443 PHE CE1 HE1 sing N N 444 PHE CE2 CZ sing Y N 445 PHE CE2 HE2 sing N N 446 PHE CZ HZ sing N N 447 PHE OXT HXT sing N N 448 PRO N CA sing N N 449 PRO N CD sing N N 450 PRO N H sing N N 451 PRO CA C sing N N 452 PRO CA CB sing N N 453 PRO CA HA sing N N 454 PRO C O doub N N 455 PRO C OXT sing N N 456 PRO CB CG sing N N 457 PRO CB HB2 sing N N 458 PRO CB HB3 sing N N 459 PRO CG CD sing N N 460 PRO CG HG2 sing N N 461 PRO CG HG3 sing N N 462 PRO CD HD2 sing N N 463 PRO CD HD3 sing N N 464 PRO OXT HXT sing N N 465 SER N CA sing N N 466 SER N H sing N N 467 SER N H2 sing N N 468 SER CA C sing N N 469 SER CA CB sing N N 470 SER CA HA sing N N 471 SER C O doub N N 472 SER C OXT sing N N 473 SER CB OG sing N N 474 SER CB HB2 sing N N 475 SER CB HB3 sing N N 476 SER OG HG sing N N 477 SER OXT HXT sing N N 478 THR N CA sing N N 479 THR N H sing N N 480 THR N H2 sing N N 481 THR CA C sing N N 482 THR CA CB sing N N 483 THR CA HA sing N N 484 THR C O doub N N 485 THR C OXT sing N N 486 THR CB OG1 sing N N 487 THR CB CG2 sing N N 488 THR CB HB sing N N 489 THR OG1 HG1 sing N N 490 THR CG2 HG21 sing N N 491 THR CG2 HG22 sing N N 492 THR CG2 HG23 sing N N 493 THR OXT HXT sing N N 494 TRP N CA sing N N 495 TRP N H sing N N 496 TRP N H2 sing N N 497 TRP CA C sing N N 498 TRP CA CB sing N N 499 TRP CA HA sing N N 500 TRP C O doub N N 501 TRP C OXT sing N N 502 TRP CB CG sing N N 503 TRP CB HB2 sing N N 504 TRP CB HB3 sing N N 505 TRP CG CD1 doub Y N 506 TRP CG CD2 sing Y N 507 TRP CD1 NE1 sing Y N 508 TRP CD1 HD1 sing N N 509 TRP CD2 CE2 doub Y N 510 TRP CD2 CE3 sing Y N 511 TRP NE1 CE2 sing Y N 512 TRP NE1 HE1 sing N N 513 TRP CE2 CZ2 sing Y N 514 TRP CE3 CZ3 doub Y N 515 TRP CE3 HE3 sing N N 516 TRP CZ2 CH2 doub Y N 517 TRP CZ2 HZ2 sing N N 518 TRP CZ3 CH2 sing Y N 519 TRP CZ3 HZ3 sing N N 520 TRP CH2 HH2 sing N N 521 TRP OXT HXT sing N N 522 TYR N CA sing N N 523 TYR N H sing N N 524 TYR N H2 sing N N 525 TYR CA C sing N N 526 TYR CA CB sing N N 527 TYR CA HA sing N N 528 TYR C O doub N N 529 TYR C OXT sing N N 530 TYR CB CG sing N N 531 TYR CB HB2 sing N N 532 TYR CB HB3 sing N N 533 TYR CG CD1 doub Y N 534 TYR CG CD2 sing Y N 535 TYR CD1 CE1 sing Y N 536 TYR CD1 HD1 sing N N 537 TYR CD2 CE2 doub Y N 538 TYR CD2 HD2 sing N N 539 TYR CE1 CZ doub Y N 540 TYR CE1 HE1 sing N N 541 TYR CE2 CZ sing Y N 542 TYR CE2 HE2 sing N N 543 TYR CZ OH sing N N 544 TYR OH HH sing N N 545 TYR OXT HXT sing N N 546 V5A "O2'" "C2'" sing N N 547 V5A "O3'" "C3'" sing N N 548 V5A "C3'" "C2'" sing N N 549 V5A "C3'" "C4'" sing N N 550 V5A "C2'" "C1'" sing N N 551 V5A "C1'" N9 sing N N 552 V5A "C1'" "O4'" sing N N 553 V5A "C4'" "O4'" sing N N 554 V5A "C4'" "C5'" sing N N 555 V5A N9 C8 sing Y N 556 V5A N9 C4 sing Y N 557 V5A "C5'" "O5'" sing N N 558 V5A "O5'" V sing N N 559 V5A C8 N7 doub Y N 560 V5A OV2 V sing N N 561 V5A C4 N3 doub Y N 562 V5A C4 C5 sing Y N 563 V5A V OV1 doub N N 564 V5A N3 C2 sing Y N 565 V5A N7 C5 sing Y N 566 V5A C5 C6 doub Y N 567 V5A C2 N1 doub Y N 568 V5A C6 N1 sing Y N 569 V5A C6 N6 sing N N 570 V5A OV2 H1 sing N N 571 V5A "C5'" H2 sing N N 572 V5A "C5'" H3 sing N N 573 V5A "C4'" H4 sing N N 574 V5A "C3'" H5 sing N N 575 V5A "O3'" H6 sing N N 576 V5A "C2'" H7 sing N N 577 V5A "O2'" H8 sing N N 578 V5A "C1'" H9 sing N N 579 V5A C8 H10 sing N N 580 V5A C2 H11 sing N N 581 V5A N6 H12 sing N N 582 V5A N6 H13 sing N N 583 VAL N CA sing N N 584 VAL N H sing N N 585 VAL N H2 sing N N 586 VAL CA C sing N N 587 VAL CA CB sing N N 588 VAL CA HA sing N N 589 VAL C O doub N N 590 VAL C OXT sing N N 591 VAL CB CG1 sing N N 592 VAL CB CG2 sing N N 593 VAL CB HB sing N N 594 VAL CG1 HG11 sing N N 595 VAL CG1 HG12 sing N N 596 VAL CG1 HG13 sing N N 597 VAL CG2 HG21 sing N N 598 VAL CG2 HG22 sing N N 599 VAL CG2 HG23 sing N N 600 VAL OXT HXT sing N N 601 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NDG 'double helix' 4NDG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 2 1_555 D DA 9 1_555 0.180 -0.109 0.007 -10.274 -14.683 0.147 1 D_DT2:DA9_E D 2 ? E 9 ? 20 1 1 C DT 3 1_555 D DA 8 1_555 -0.093 -0.123 0.073 -3.972 -11.905 -0.648 2 D_DT3:DA8_E D 3 ? E 8 ? 20 1 1 C DA 4 1_555 D DT 7 1_555 0.102 -0.106 -0.041 -4.044 -5.988 -1.168 3 D_DA4:DT7_E D 4 ? E 7 ? 20 1 1 C DT 5 1_555 D DA 6 1_555 -0.306 -0.107 -0.039 10.798 -6.244 -0.316 4 D_DT5:DA6_E D 5 ? E 6 ? 20 1 1 C DG 6 1_555 D DC 5 1_555 -0.252 -0.149 0.153 3.808 -8.977 -0.758 5 D_DG6:DC5_E D 6 ? E 5 ? 19 1 1 C DA 7 1_555 D DT 4 1_555 -0.139 -0.139 0.157 -4.675 -14.657 -1.991 6 D_DA7:DT4_E D 7 ? E 4 ? 20 1 1 C DT 8 1_555 D DA 3 1_555 -0.483 -0.133 0.127 -7.850 -13.375 -2.468 7 D_DT8:DA3_E D 8 ? E 3 ? 20 1 1 C DT 9 1_555 D DA 2 1_555 0.030 -0.157 -0.105 -3.704 -13.598 -0.346 8 D_DT9:DA2_E D 9 ? E 2 ? 20 1 1 C DC 10 1_555 D DG 1 1_555 0.108 -0.166 -0.534 0.454 -9.326 2.065 9 D_DC10:DG1_E D 10 ? E 1 ? 19 1 1 E DT 2 1_555 F DA 9 1_555 -0.326 -0.083 0.292 -16.426 -11.807 -0.851 10 G_DT2:DA9_H G 2 ? H 9 ? 20 1 1 E DT 3 1_555 F DA 8 1_555 -0.395 -0.066 0.101 -4.482 -7.257 -4.080 11 G_DT3:DA8_H G 3 ? H 8 ? 20 1 1 E DA 4 1_555 F DT 7 1_555 0.191 -0.089 -0.199 -5.107 -8.124 -3.218 12 G_DA4:DT7_H G 4 ? H 7 ? 20 1 1 E DT 5 1_555 F DA 6 1_555 -0.232 -0.097 0.029 2.127 -6.320 -2.992 13 G_DT5:DA6_H G 5 ? H 6 ? 20 1 1 E DG 6 1_555 F DC 5 1_555 -0.110 -0.140 0.185 4.865 -9.602 -0.571 14 G_DG6:DC5_H G 6 ? H 5 ? 19 1 1 E DA 7 1_555 F DT 4 1_555 -0.084 -0.154 0.081 -1.971 -11.045 -0.526 15 G_DA7:DT4_H G 7 ? H 4 ? 20 1 1 E DT 8 1_555 F DA 3 1_555 -0.224 -0.107 -0.040 -2.886 -14.444 -1.355 16 G_DT8:DA3_H G 8 ? H 3 ? 20 1 1 E DT 9 1_555 F DA 2 1_555 0.355 -0.203 -0.162 -4.021 -16.935 1.599 17 G_DT9:DA2_H G 9 ? H 2 ? 20 1 1 E DC 10 1_555 F DG 1 1_555 0.221 -0.180 -0.444 0.870 -9.767 2.604 18 G_DC10:DG1_H G 10 ? H 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 2 1_555 D DA 9 1_555 C DT 3 1_555 D DA 8 1_555 -0.259 -0.427 3.130 0.729 6.221 31.824 -1.799 0.584 2.989 11.210 -1.313 32.419 1 DD_DT2DT3:DA8DA9_EE D 2 ? E 9 ? D 3 ? E 8 ? 1 C DT 3 1_555 D DA 8 1_555 C DA 4 1_555 D DT 7 1_555 -0.024 -0.047 3.316 -1.281 7.288 37.255 -1.015 -0.129 3.249 11.273 1.981 37.957 2 DD_DT3DA4:DT7DA8_EE D 3 ? E 8 ? D 4 ? E 7 ? 1 C DA 4 1_555 D DT 7 1_555 C DT 5 1_555 D DA 6 1_555 -0.198 -0.403 2.963 -0.413 0.898 25.374 -1.151 0.343 2.950 2.042 0.940 25.393 3 DD_DA4DT5:DA6DT7_EE D 4 ? E 7 ? D 5 ? E 6 ? 1 C DT 5 1_555 D DA 6 1_555 C DG 6 1_555 D DC 5 1_555 0.048 0.187 3.463 -0.749 10.984 36.945 -1.173 -0.173 3.379 16.879 1.151 38.496 4 DD_DT5DG6:DC5DA6_EE D 5 ? E 6 ? D 6 ? E 5 ? 1 C DG 6 1_555 D DC 5 1_555 C DA 7 1_555 D DT 4 1_555 -0.373 -0.485 3.398 -2.721 0.927 36.868 -0.895 0.207 3.403 1.463 4.295 36.976 5 DD_DG6DA7:DT4DC5_EE D 6 ? E 5 ? D 7 ? E 4 ? 1 C DA 7 1_555 D DT 4 1_555 C DT 8 1_555 D DA 3 1_555 -0.323 -0.875 3.317 -0.312 -4.934 34.016 -0.684 0.497 3.409 -8.380 0.529 34.363 6 DD_DA7DT8:DA3DT4_EE D 7 ? E 4 ? D 8 ? E 3 ? 1 C DT 8 1_555 D DA 3 1_555 C DT 9 1_555 D DA 2 1_555 0.217 -0.326 3.129 2.583 1.458 36.422 -0.713 -0.004 3.122 2.328 -4.125 36.538 7 DD_DT8DT9:DA2DA3_EE D 8 ? E 3 ? D 9 ? E 2 ? 1 C DT 9 1_555 D DA 2 1_555 C DC 10 1_555 D DG 1 1_555 0.560 -0.069 3.149 3.905 -1.450 34.391 0.100 -0.357 3.192 -2.442 -6.575 34.635 8 DD_DT9DC10:DG1DA2_EE D 9 ? E 2 ? D 10 ? E 1 ? 1 E DT 2 1_555 F DA 9 1_555 E DT 3 1_555 F DA 8 1_555 -0.613 -0.666 2.977 -0.261 2.487 31.476 -1.641 1.082 2.922 4.576 0.481 31.573 9 GG_DT2DT3:DA8DA9_HH G 2 ? H 9 ? G 3 ? H 8 ? 1 E DT 3 1_555 F DA 8 1_555 E DA 4 1_555 F DT 7 1_555 -0.014 -0.276 3.417 0.012 5.336 37.566 -1.133 0.022 3.348 8.235 -0.019 37.930 10 GG_DT3DA4:DT7DA8_HH G 3 ? H 8 ? G 4 ? H 7 ? 1 E DA 4 1_555 F DT 7 1_555 E DT 5 1_555 F DA 6 1_555 -0.143 -0.664 3.149 -1.255 5.113 25.395 -2.814 -0.010 2.964 11.474 2.817 25.927 11 GG_DA4DT5:DA6DT7_HH G 4 ? H 7 ? G 5 ? H 6 ? 1 E DT 5 1_555 F DA 6 1_555 E DG 6 1_555 F DC 5 1_555 0.333 -0.029 3.222 -1.490 6.927 36.588 -0.949 -0.716 3.149 10.909 2.346 37.244 12 GG_DT5DG6:DC5DA6_HH G 5 ? H 6 ? G 6 ? H 5 ? 1 E DG 6 1_555 F DC 5 1_555 E DA 7 1_555 F DT 4 1_555 -0.198 -0.286 3.295 -0.551 2.080 37.899 -0.707 0.234 3.278 3.199 0.847 37.958 13 GG_DG6DA7:DT4DC5_HH G 6 ? H 5 ? G 7 ? H 4 ? 1 E DA 7 1_555 F DT 4 1_555 E DT 8 1_555 F DA 3 1_555 -0.306 -0.806 3.304 1.535 -2.356 33.727 -0.998 0.778 3.334 -4.052 -2.639 33.841 14 GG_DA7DT8:DA3DT4_HH G 7 ? H 4 ? G 8 ? H 3 ? 1 E DT 8 1_555 F DA 3 1_555 E DT 9 1_555 F DA 2 1_555 0.182 -0.241 3.258 2.748 1.903 36.188 -0.651 0.090 3.246 3.055 -4.413 36.337 15 GG_DT8DT9:DA2DA3_HH G 8 ? H 3 ? G 9 ? H 2 ? 1 E DT 9 1_555 F DA 2 1_555 E DC 10 1_555 F DG 1 1_555 0.443 0.015 3.188 2.286 -0.860 33.973 0.159 -0.400 3.209 -1.470 -3.906 34.058 16 GG_DT9DC10:DG1DA2_HH G 9 ? H 2 ? G 10 ? H 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "adenosine-5'-vanadate" V5A 5 'ZINC ION' ZN 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4NDH _pdbx_initial_refinement_model.details 'PDB ENTRY 4NDH' #