data_4NDS # _entry.id 4NDS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NDS RCSB RCSB083075 WWPDB D_1000083075 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NDT 'L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form' unspecified PDB 4NDU 'L. decastes alpha-galactosyl-binding lectin in complex with alpha-methylgalactoside' unspecified PDB 4NDV 'L. decastes alpha-galactosyl-binding lectin in complex with globotriose' unspecified # _pdbx_database_status.entry_id 4NDS _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Van Eerde, A.' 1 'Grahn, E.' 2 'Krengel, U.' 3 # _citation.id primary _citation.title ;Atomic-resolution structure of the alpha-galactosyl binding Lyophyllum decastes lectin reveals a new protein family found in both fungi and plants. ; _citation.journal_abbrev Glycobiology _citation.journal_volume 25 _citation.page_first 492 _citation.page_last 501 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0959-6658 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25504801 _citation.pdbx_database_id_DOI 10.1093/glycob/cwu136 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'van Eerde, A.' 1 primary 'Grahn, E.M.' 2 primary 'Winter, H.C.' 3 primary 'Goldstein, I.J.' 4 primary 'Krengel, U.' 5 # _cell.length_a 34.840 _cell.length_b 56.774 _cell.length_c 44.458 _cell.angle_alpha 90.000 _cell.angle_beta 107.100 _cell.angle_gamma 90.000 _cell.entry_id 4NDS _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4NDS _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Alpha-galactosyl-binding lectin' 10291.380 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 water nat water 18.015 306 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN SGRLSLAFGNCEEL ; _entity_poly.pdbx_seq_one_letter_code_can ;ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN SGRLSLAFGNCEEL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 TRP n 1 4 LYS n 1 5 ALA n 1 6 ASN n 1 7 SER n 1 8 CYS n 1 9 PRO n 1 10 GLY n 1 11 SER n 1 12 ALA n 1 13 PHE n 1 14 GLU n 1 15 SER n 1 16 LYS n 1 17 ASP n 1 18 ARG n 1 19 LEU n 1 20 ARG n 1 21 SER n 1 22 PHE n 1 23 ALA n 1 24 LEU n 1 25 LEU n 1 26 TYR n 1 27 CYS n 1 28 ARG n 1 29 TYR n 1 30 ASN n 1 31 TYR n 1 32 LYS n 1 33 PRO n 1 34 PRO n 1 35 TYR n 1 36 GLY n 1 37 GLN n 1 38 GLY n 1 39 ALA n 1 40 PHE n 1 41 GLY n 1 42 TYR n 1 43 ALA n 1 44 SER n 1 45 ALA n 1 46 VAL n 1 47 SER n 1 48 THR n 1 49 HIS n 1 50 GLY n 1 51 TRP n 1 52 GLU n 1 53 THR n 1 54 GLU n 1 55 ALA n 1 56 GLN n 1 57 CYS n 1 58 ILE n 1 59 ASN n 1 60 THR n 1 61 PHE n 1 62 GLU n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 THR n 1 67 SER n 1 68 CYS n 1 69 HIS n 1 70 GLY n 1 71 GLN n 1 72 SER n 1 73 ASN n 1 74 GLY n 1 75 GLY n 1 76 THR n 1 77 LEU n 1 78 GLU n 1 79 LEU n 1 80 ASN n 1 81 SER n 1 82 GLY n 1 83 ARG n 1 84 LEU n 1 85 SER n 1 86 LEU n 1 87 ALA n 1 88 PHE n 1 89 GLY n 1 90 ASN n 1 91 CYS n 1 92 GLU n 1 93 GLU n 1 94 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Fried chicken mushroom' _entity_src_nat.pdbx_organism_scientific 'Lyophyllum decastes' _entity_src_nat.pdbx_ncbi_taxonomy_id 64660 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ 'fruiting bodies' _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AGBL_LYODE _struct_ref.pdbx_db_accession A7UNK4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN SGRLSLAFGNCEEL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NDS A 1 ? 94 ? A7UNK4 1 ? 94 ? 1 94 2 1 4NDS B 1 ? 94 ? A7UNK4 1 ? 94 ? 1 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NDS _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2 M calcium chloride, 0.1 M HEPES sodium, 28% v/v PEG400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-05-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'diamond(001)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_wavelength_list 0.934 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 # _reflns.entry_id 4NDS _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 0.997 _reflns.d_resolution_low 20.0 _reflns.number_all 84161 _reflns.number_obs 84151 _reflns.percent_possible_obs 95 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.997 _reflns_shell.d_res_low 1.06 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 92 _reflns_shell.Rmerge_I_obs 0.507 _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NDS _refine.ls_d_res_high 0.997 _refine.ls_d_res_low 17.288 _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.46 _refine.ls_number_reflns_obs 84142 _refine.ls_number_reflns_all 84151 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.11 _refine.ls_R_factor_obs 0.1099 _refine.ls_R_factor_R_work 0.1091 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1245 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0300 _refine.ls_number_reflns_R_free 4235 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 11.3947 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ANISOTROPIC _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 50.450 _refine.B_iso_min 3.120 _refine.pdbx_overall_phase_error 10.1400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.080 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1444 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 306 _refine_hist.number_atoms_total 1753 _refine_hist.d_res_high 0.997 _refine_hist.d_res_low 17.288 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1684 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2309 1.345 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 232 0.081 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 315 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 627 11.503 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 0.997 1.0081 30 51.0 1433 . 0.1937 0.2157 . 85 . 1518 . . 'X-RAY DIFFRACTION' 1.0081 1.0199 30 92.0 2595 . 0.2021 0.2246 . 138 . 2733 . . 'X-RAY DIFFRACTION' 1.0199 1.0324 30 93.0 2672 . 0.1837 0.2105 . 141 . 2813 . . 'X-RAY DIFFRACTION' 1.0324 1.0454 30 93.0 2625 . 0.1694 0.2121 . 139 . 2764 . . 'X-RAY DIFFRACTION' 1.0454 1.0592 30 93.0 2685 . 0.1590 0.1583 . 142 . 2827 . . 'X-RAY DIFFRACTION' 1.0592 1.0737 30 94.0 2631 . 0.1454 0.1789 . 138 . 2769 . . 'X-RAY DIFFRACTION' 1.0737 1.0890 30 93.0 2688 . 0.1352 0.1552 . 148 . 2836 . . 'X-RAY DIFFRACTION' 1.0890 1.1053 30 95.0 2652 . 0.1250 0.1386 . 137 . 2789 . . 'X-RAY DIFFRACTION' 1.1053 1.1226 30 94.0 2695 . 0.1168 0.1258 . 140 . 2835 . . 'X-RAY DIFFRACTION' 1.1226 1.1410 30 96.0 2711 . 0.1120 0.1236 . 144 . 2855 . . 'X-RAY DIFFRACTION' 1.1410 1.1606 30 94.0 2688 . 0.1013 0.1208 . 141 . 2829 . . 'X-RAY DIFFRACTION' 1.1606 1.1817 30 97.0 2728 . 0.1000 0.1146 . 148 . 2876 . . 'X-RAY DIFFRACTION' 1.1817 1.2044 30 95.0 2734 . 0.0932 0.1372 . 145 . 2879 . . 'X-RAY DIFFRACTION' 1.2044 1.2290 30 97.0 2748 . 0.0924 0.1135 . 143 . 2891 . . 'X-RAY DIFFRACTION' 1.2290 1.2557 30 96.0 2750 . 0.0930 0.1251 . 147 . 2897 . . 'X-RAY DIFFRACTION' 1.2557 1.2849 30 97.0 2768 . 0.0904 0.1001 . 146 . 2914 . . 'X-RAY DIFFRACTION' 1.2849 1.3171 30 97.0 2745 . 0.0916 0.0988 . 146 . 2891 . . 'X-RAY DIFFRACTION' 1.3171 1.3527 30 97.0 2787 . 0.0868 0.1225 . 147 . 2934 . . 'X-RAY DIFFRACTION' 1.3527 1.3924 30 98.0 2772 . 0.0845 0.1033 . 146 . 2918 . . 'X-RAY DIFFRACTION' 1.3924 1.4374 30 98.0 2783 . 0.0838 0.1046 . 145 . 2928 . . 'X-RAY DIFFRACTION' 1.4374 1.4887 30 98.0 2824 . 0.0766 0.0956 . 150 . 2974 . . 'X-RAY DIFFRACTION' 1.4887 1.5483 30 98.0 2794 . 0.0756 0.0912 . 137 . 2931 . . 'X-RAY DIFFRACTION' 1.5483 1.6187 30 99.0 2811 . 0.0786 0.0929 . 143 . 2954 . . 'X-RAY DIFFRACTION' 1.6187 1.7040 30 99.0 2851 . 0.0837 0.1068 . 133 . 2984 . . 'X-RAY DIFFRACTION' 1.7040 1.8106 30 99.0 2837 . 0.0869 0.1090 . 141 . 2978 . . 'X-RAY DIFFRACTION' 1.8106 1.9503 30 99.0 2848 . 0.0949 0.1082 . 162 . 3010 . . 'X-RAY DIFFRACTION' 1.9503 2.1462 30 99.0 2815 . 0.0924 0.0991 . 157 . 2972 . . 'X-RAY DIFFRACTION' 2.1462 2.4560 30 98.0 2833 . 0.1012 0.1193 . 146 . 2979 . . 'X-RAY DIFFRACTION' 2.4560 3.0914 30 94.0 2686 . 0.1297 0.1354 . 149 . 2835 . . 'X-RAY DIFFRACTION' 3.0914 17.2902 30 59.0 1718 . 0.1912 0.1768 . 111 . 1829 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NDS _struct.title 'Crystal structure of L. decastes alpha-galactosyl-binding lectin' _struct.pdbx_descriptor 'Alpha-galactosyl-binding lectin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NDS _struct_keywords.text 'lectin, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? TYR A 31 ? SER A 15 TYR A 31 1 ? 17 HELX_P HELX_P2 2 THR A 53 ? HIS A 69 ? THR A 53 HIS A 69 1 ? 17 HELX_P HELX_P3 3 SER B 15 ? TYR B 31 ? SER B 15 TYR B 31 1 ? 17 HELX_P HELX_P4 4 THR B 53 ? HIS B 69 ? THR B 53 HIS B 69 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 2 A CYS 68 1_555 ? ? ? ? ? ? ? 2.051 ? disulf2 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 8 A CYS 91 1_555 ? ? ? ? ? ? ? 2.087 ? disulf3 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 27 A CYS 57 1_555 ? ? ? ? ? ? ? 2.083 ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 68 SG ? ? B CYS 2 B CYS 68 1_555 ? ? ? ? ? ? ? 2.045 ? disulf5 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 91 SG ? ? B CYS 8 B CYS 91 1_555 ? ? ? ? ? ? ? 2.079 ? disulf6 disulf ? ? B CYS 27 SG ? ? ? 1_555 B CYS 57 SG ? ? B CYS 27 B CYS 57 1_555 ? ? ? ? ? ? ? 2.060 ? metalc1 metalc ? ? B GLY 41 O ? ? ? 1_555 E NA . NA ? ? B GLY 41 B NA 103 1_555 ? ? ? ? ? ? ? 2.286 ? metalc2 metalc ? ? B GLU 52 OE1 ? ? ? 1_555 D NA . NA ? ? B GLU 52 B NA 102 1_555 ? ? ? ? ? ? ? 2.461 ? metalc3 metalc ? ? B THR 66 O ? ? ? 1_555 C NA . NA ? ? B THR 66 B NA 101 1_555 ? ? ? ? ? ? ? 2.467 ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 234 1_555 ? ? ? ? ? ? ? 2.232 ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 102 B HOH 349 1_555 ? ? ? ? ? ? ? 2.278 ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 103 B HOH 308 1_555 ? ? ? ? ? ? ? 2.376 ? metalc7 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 302 1_555 ? ? ? ? ? ? ? 2.434 ? metalc8 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 281 1_555 ? ? ? ? ? ? ? 2.461 ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 103 B HOH 330 1_555 ? ? ? ? ? ? ? 2.477 ? metalc10 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 102 B HOH 343 1_555 ? ? ? ? ? ? ? 2.478 ? metalc11 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 103 B HOH 213 1_555 ? ? ? ? ? ? ? 2.482 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 33 A . ? PRO 33 A PRO 34 A ? PRO 34 A 1 4.54 2 PRO 33 B . ? PRO 33 B PRO 34 B ? PRO 34 B 1 6.98 3 PRO 33 B . ? PRO 33 B PRO 34 B ? PRO 34 B 1 2.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 35 ? PHE A 40 ? TYR A 35 PHE A 40 A 2 ALA A 43 ? THR A 48 ? ALA A 43 THR A 48 A 3 GLY A 82 ? ALA A 87 ? GLY A 82 ALA A 87 A 4 GLY A 74 ? LEU A 79 ? GLY A 74 LEU A 79 B 1 TYR B 35 ? PHE B 40 ? TYR B 35 PHE B 40 B 2 ALA B 43 ? THR B 48 ? ALA B 43 THR B 48 B 3 GLY B 82 ? ALA B 87 ? GLY B 82 ALA B 87 B 4 GLY B 74 ? LEU B 79 ? GLY B 74 LEU B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 36 ? N GLY A 36 O SER A 47 ? O SER A 47 A 2 3 N SER A 44 ? N SER A 44 O ALA A 87 ? O ALA A 87 A 3 4 O LEU A 84 ? O LEU A 84 N LEU A 77 ? N LEU A 77 B 1 2 N GLY B 36 ? N GLY B 36 O SER B 47 ? O SER B 47 B 2 3 N SER B 44 ? N SER B 44 O ALA B 87 ? O ALA B 87 B 3 4 O LEU B 84 ? O LEU B 84 N LEU B 77 ? N LEU B 77 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA B 101' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA B 102' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS B 16 ? LYS B 16 . ? 1_555 ? 2 AC1 5 THR B 66 ? THR B 66 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH B 234 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH B 281 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH B 302 . ? 1_555 ? 6 AC2 6 ASP A 17 ? ASP A 17 . ? 1_454 ? 7 AC2 6 HOH F . ? HOH A 198 . ? 1_454 ? 8 AC2 6 GLU B 52 ? GLU B 52 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH B 225 . ? 1_455 ? 10 AC2 6 HOH G . ? HOH B 343 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH B 349 . ? 1_555 ? 12 AC3 4 GLY B 41 ? GLY B 41 . ? 1_555 ? 13 AC3 4 HOH G . ? HOH B 213 . ? 1_555 ? 14 AC3 4 HOH G . ? HOH B 308 . ? 1_555 ? 15 AC3 4 HOH G . ? HOH B 330 . ? 1_555 ? # _atom_sites.entry_id 4NDS _atom_sites.fract_transf_matrix[1][1] 0.028703 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008831 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017614 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023534 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LEU 94 94 94 LEU LEU A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 TRP 3 3 3 TRP TRP B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ASN 6 6 6 ASN ASN B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 CYS 8 8 8 CYS CYS B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 PHE 13 13 13 PHE PHE B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 TYR 26 26 26 TYR TYR B . n B 1 27 CYS 27 27 27 CYS CYS B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 TYR 29 29 29 TYR TYR B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 TYR 31 31 31 TYR TYR B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 PRO 33 33 33 PRO PRO B . n B 1 34 PRO 34 34 34 PRO PRO B . n B 1 35 TYR 35 35 35 TYR TYR B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 GLN 37 37 37 GLN GLN B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 PHE 40 40 40 PHE PHE B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 ALA 45 45 45 ALA ALA B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 HIS 49 49 49 HIS HIS B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 TRP 51 51 51 TRP TRP B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 THR 53 53 53 THR THR B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 CYS 57 57 57 CYS CYS B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 PHE 61 61 61 PHE PHE B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 GLN 63 63 63 GLN GLN B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 ILE 65 65 65 ILE ILE B . n B 1 66 THR 66 66 66 THR THR B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 CYS 68 68 68 CYS CYS B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 GLN 71 71 71 GLN GLN B . n B 1 72 SER 72 72 72 SER SER B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 THR 76 76 76 THR THR B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 SER 81 81 81 SER SER B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 ARG 83 83 83 ARG ARG B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ALA 87 87 87 ALA ALA B . n B 1 88 PHE 88 88 88 PHE PHE B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 ASN 90 90 90 ASN ASN B . n B 1 91 CYS 91 91 91 CYS CYS B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 LEU 94 94 94 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 101 1 NA NA B . D 2 NA 1 102 1 NA NA B . E 2 NA 1 103 1 NA NA B . F 3 HOH 1 101 1 HOH HOH A . F 3 HOH 2 102 3 HOH HOH A . F 3 HOH 3 103 4 HOH HOH A . F 3 HOH 4 104 7 HOH HOH A . F 3 HOH 5 105 9 HOH HOH A . F 3 HOH 6 106 11 HOH HOH A . F 3 HOH 7 107 12 HOH HOH A . F 3 HOH 8 108 13 HOH HOH A . F 3 HOH 9 109 16 HOH HOH A . F 3 HOH 10 110 18 HOH HOH A . F 3 HOH 11 111 19 HOH HOH A . F 3 HOH 12 112 20 HOH HOH A . F 3 HOH 13 113 21 HOH HOH A . F 3 HOH 14 114 22 HOH HOH A . F 3 HOH 15 115 23 HOH HOH A . F 3 HOH 16 116 24 HOH HOH A . F 3 HOH 17 117 25 HOH HOH A . F 3 HOH 18 118 26 HOH HOH A . F 3 HOH 19 119 28 HOH HOH A . F 3 HOH 20 120 30 HOH HOH A . F 3 HOH 21 121 32 HOH HOH A . F 3 HOH 22 122 33 HOH HOH A . F 3 HOH 23 123 34 HOH HOH A . F 3 HOH 24 124 36 HOH HOH A . F 3 HOH 25 125 37 HOH HOH A . F 3 HOH 26 126 38 HOH HOH A . F 3 HOH 27 127 39 HOH HOH A . F 3 HOH 28 128 41 HOH HOH A . F 3 HOH 29 129 48 HOH HOH A . F 3 HOH 30 130 49 HOH HOH A . F 3 HOH 31 131 50 HOH HOH A . F 3 HOH 32 132 52 HOH HOH A . F 3 HOH 33 133 54 HOH HOH A . F 3 HOH 34 134 56 HOH HOH A . F 3 HOH 35 135 57 HOH HOH A . F 3 HOH 36 136 61 HOH HOH A . F 3 HOH 37 137 62 HOH HOH A . F 3 HOH 38 138 63 HOH HOH A . F 3 HOH 39 139 64 HOH HOH A . F 3 HOH 40 140 65 HOH HOH A . F 3 HOH 41 141 66 HOH HOH A . F 3 HOH 42 142 67 HOH HOH A . F 3 HOH 43 143 69 HOH HOH A . F 3 HOH 44 144 71 HOH HOH A . F 3 HOH 45 145 72 HOH HOH A . F 3 HOH 46 146 73 HOH HOH A . F 3 HOH 47 147 81 HOH HOH A . F 3 HOH 48 148 82 HOH HOH A . F 3 HOH 49 149 84 HOH HOH A . F 3 HOH 50 150 87 HOH HOH A . F 3 HOH 51 151 88 HOH HOH A . F 3 HOH 52 152 91 HOH HOH A . F 3 HOH 53 153 92 HOH HOH A . F 3 HOH 54 154 95 HOH HOH A . F 3 HOH 55 155 96 HOH HOH A . F 3 HOH 56 156 97 HOH HOH A . F 3 HOH 57 157 103 HOH HOH A . F 3 HOH 58 158 105 HOH HOH A . F 3 HOH 59 159 106 HOH HOH A . F 3 HOH 60 160 107 HOH HOH A . F 3 HOH 61 161 108 HOH HOH A . F 3 HOH 62 162 111 HOH HOH A . F 3 HOH 63 163 112 HOH HOH A . F 3 HOH 64 164 114 HOH HOH A . F 3 HOH 65 165 115 HOH HOH A . F 3 HOH 66 166 116 HOH HOH A . F 3 HOH 67 167 118 HOH HOH A . F 3 HOH 68 168 121 HOH HOH A . F 3 HOH 69 169 122 HOH HOH A . F 3 HOH 70 170 123 HOH HOH A . F 3 HOH 71 171 125 HOH HOH A . F 3 HOH 72 172 126 HOH HOH A . F 3 HOH 73 173 127 HOH HOH A . F 3 HOH 74 174 130 HOH HOH A . F 3 HOH 75 175 131 HOH HOH A . F 3 HOH 76 176 133 HOH HOH A . F 3 HOH 77 177 134 HOH HOH A . F 3 HOH 78 178 137 HOH HOH A . F 3 HOH 79 179 140 HOH HOH A . F 3 HOH 80 180 141 HOH HOH A . F 3 HOH 81 181 142 HOH HOH A . F 3 HOH 82 182 144 HOH HOH A . F 3 HOH 83 183 147 HOH HOH A . F 3 HOH 84 184 151 HOH HOH A . F 3 HOH 85 185 152 HOH HOH A . F 3 HOH 86 186 153 HOH HOH A . F 3 HOH 87 187 154 HOH HOH A . F 3 HOH 88 188 155 HOH HOH A . F 3 HOH 89 189 160 HOH HOH A . F 3 HOH 90 190 161 HOH HOH A . F 3 HOH 91 191 162 HOH HOH A . F 3 HOH 92 192 163 HOH HOH A . F 3 HOH 93 193 165 HOH HOH A . F 3 HOH 94 194 166 HOH HOH A . F 3 HOH 95 195 168 HOH HOH A . F 3 HOH 96 196 179 HOH HOH A . F 3 HOH 97 197 180 HOH HOH A . F 3 HOH 98 198 181 HOH HOH A . F 3 HOH 99 199 182 HOH HOH A . F 3 HOH 100 200 184 HOH HOH A . F 3 HOH 101 201 185 HOH HOH A . F 3 HOH 102 202 187 HOH HOH A . F 3 HOH 103 203 189 HOH HOH A . F 3 HOH 104 204 190 HOH HOH A . F 3 HOH 105 205 199 HOH HOH A . F 3 HOH 106 206 200 HOH HOH A . F 3 HOH 107 207 201 HOH HOH A . F 3 HOH 108 208 209 HOH HOH A . F 3 HOH 109 209 210 HOH HOH A . F 3 HOH 110 210 211 HOH HOH A . F 3 HOH 111 211 212 HOH HOH A . F 3 HOH 112 212 215 HOH HOH A . F 3 HOH 113 213 220 HOH HOH A . F 3 HOH 114 214 221 HOH HOH A . F 3 HOH 115 215 224 HOH HOH A . F 3 HOH 116 216 227 HOH HOH A . F 3 HOH 117 217 232 HOH HOH A . F 3 HOH 118 218 241 HOH HOH A . F 3 HOH 119 219 242 HOH HOH A . F 3 HOH 120 220 244 HOH HOH A . F 3 HOH 121 221 245 HOH HOH A . F 3 HOH 122 222 247 HOH HOH A . F 3 HOH 123 223 250 HOH HOH A . F 3 HOH 124 224 262 HOH HOH A . F 3 HOH 125 225 273 HOH HOH A . F 3 HOH 126 226 276 HOH HOH A . F 3 HOH 127 227 277 HOH HOH A . F 3 HOH 128 228 280 HOH HOH A . F 3 HOH 129 229 287 HOH HOH A . F 3 HOH 130 230 290 HOH HOH A . F 3 HOH 131 231 293 HOH HOH A . F 3 HOH 132 232 294 HOH HOH A . F 3 HOH 133 233 295 HOH HOH A . F 3 HOH 134 234 297 HOH HOH A . F 3 HOH 135 235 298 HOH HOH A . F 3 HOH 136 236 299 HOH HOH A . F 3 HOH 137 237 303 HOH HOH A . F 3 HOH 138 238 307 HOH HOH A . F 3 HOH 139 239 309 HOH HOH A . F 3 HOH 140 240 315 HOH HOH A . F 3 HOH 141 241 317 HOH HOH A . F 3 HOH 142 242 319 HOH HOH A . F 3 HOH 143 243 331 HOH HOH A . F 3 HOH 144 244 335 HOH HOH A . F 3 HOH 145 245 336 HOH HOH A . F 3 HOH 146 246 337 HOH HOH A . F 3 HOH 147 247 338 HOH HOH A . F 3 HOH 148 248 339 HOH HOH A . F 3 HOH 149 249 340 HOH HOH A . F 3 HOH 150 250 341 HOH HOH A . F 3 HOH 151 251 344 HOH HOH A . F 3 HOH 152 252 348 HOH HOH A . F 3 HOH 153 253 349 HOH HOH A . F 3 HOH 154 254 217 HOH HOH A . G 3 HOH 1 201 2 HOH HOH B . G 3 HOH 2 202 5 HOH HOH B . G 3 HOH 3 203 6 HOH HOH B . G 3 HOH 4 204 8 HOH HOH B . G 3 HOH 5 205 10 HOH HOH B . G 3 HOH 6 206 14 HOH HOH B . G 3 HOH 7 207 15 HOH HOH B . G 3 HOH 8 208 17 HOH HOH B . G 3 HOH 9 209 27 HOH HOH B . G 3 HOH 10 210 29 HOH HOH B . G 3 HOH 11 211 31 HOH HOH B . G 3 HOH 12 212 40 HOH HOH B . G 3 HOH 13 213 42 HOH HOH B . G 3 HOH 14 214 43 HOH HOH B . G 3 HOH 15 215 44 HOH HOH B . G 3 HOH 16 216 45 HOH HOH B . G 3 HOH 17 217 46 HOH HOH B . G 3 HOH 18 218 51 HOH HOH B . G 3 HOH 19 219 53 HOH HOH B . G 3 HOH 20 220 55 HOH HOH B . G 3 HOH 21 221 58 HOH HOH B . G 3 HOH 22 222 59 HOH HOH B . G 3 HOH 23 223 60 HOH HOH B . G 3 HOH 24 224 68 HOH HOH B . G 3 HOH 25 225 74 HOH HOH B . G 3 HOH 26 226 75 HOH HOH B . G 3 HOH 27 227 76 HOH HOH B . G 3 HOH 28 228 77 HOH HOH B . G 3 HOH 29 229 78 HOH HOH B . G 3 HOH 30 230 79 HOH HOH B . G 3 HOH 31 231 80 HOH HOH B . G 3 HOH 32 232 83 HOH HOH B . G 3 HOH 33 233 85 HOH HOH B . G 3 HOH 34 234 86 HOH HOH B . G 3 HOH 35 235 89 HOH HOH B . G 3 HOH 36 236 90 HOH HOH B . G 3 HOH 37 237 93 HOH HOH B . G 3 HOH 38 238 94 HOH HOH B . G 3 HOH 39 239 98 HOH HOH B . G 3 HOH 40 240 99 HOH HOH B . G 3 HOH 41 241 100 HOH HOH B . G 3 HOH 42 242 101 HOH HOH B . G 3 HOH 43 243 102 HOH HOH B . G 3 HOH 44 244 104 HOH HOH B . G 3 HOH 45 245 109 HOH HOH B . G 3 HOH 46 246 110 HOH HOH B . G 3 HOH 47 247 113 HOH HOH B . G 3 HOH 48 248 117 HOH HOH B . G 3 HOH 49 249 119 HOH HOH B . G 3 HOH 50 250 120 HOH HOH B . G 3 HOH 51 251 124 HOH HOH B . G 3 HOH 52 252 128 HOH HOH B . G 3 HOH 53 253 129 HOH HOH B . G 3 HOH 54 254 132 HOH HOH B . G 3 HOH 55 255 135 HOH HOH B . G 3 HOH 56 256 136 HOH HOH B . G 3 HOH 57 257 138 HOH HOH B . G 3 HOH 58 258 139 HOH HOH B . G 3 HOH 59 259 145 HOH HOH B . G 3 HOH 60 260 146 HOH HOH B . G 3 HOH 61 261 148 HOH HOH B . G 3 HOH 62 262 149 HOH HOH B . G 3 HOH 63 263 150 HOH HOH B . G 3 HOH 64 264 156 HOH HOH B . G 3 HOH 65 265 157 HOH HOH B . G 3 HOH 66 266 159 HOH HOH B . G 3 HOH 67 267 169 HOH HOH B . G 3 HOH 68 268 170 HOH HOH B . G 3 HOH 69 269 171 HOH HOH B . G 3 HOH 70 270 172 HOH HOH B . G 3 HOH 71 271 173 HOH HOH B . G 3 HOH 72 272 175 HOH HOH B . G 3 HOH 73 273 176 HOH HOH B . G 3 HOH 74 274 177 HOH HOH B . G 3 HOH 75 275 178 HOH HOH B . G 3 HOH 76 276 183 HOH HOH B . G 3 HOH 77 277 186 HOH HOH B . G 3 HOH 78 278 188 HOH HOH B . G 3 HOH 79 279 191 HOH HOH B . G 3 HOH 80 280 192 HOH HOH B . G 3 HOH 81 281 193 HOH HOH B . G 3 HOH 82 282 195 HOH HOH B . G 3 HOH 83 283 202 HOH HOH B . G 3 HOH 84 284 203 HOH HOH B . G 3 HOH 85 285 206 HOH HOH B . G 3 HOH 86 286 207 HOH HOH B . G 3 HOH 87 287 208 HOH HOH B . G 3 HOH 88 288 214 HOH HOH B . G 3 HOH 89 289 216 HOH HOH B . G 3 HOH 90 290 222 HOH HOH B . G 3 HOH 91 291 223 HOH HOH B . G 3 HOH 92 292 225 HOH HOH B . G 3 HOH 93 293 226 HOH HOH B . G 3 HOH 94 294 228 HOH HOH B . G 3 HOH 95 295 233 HOH HOH B . G 3 HOH 96 296 235 HOH HOH B . G 3 HOH 97 297 236 HOH HOH B . G 3 HOH 98 298 240 HOH HOH B . G 3 HOH 99 299 243 HOH HOH B . G 3 HOH 100 300 248 HOH HOH B . G 3 HOH 101 301 251 HOH HOH B . G 3 HOH 102 302 253 HOH HOH B . G 3 HOH 103 303 254 HOH HOH B . G 3 HOH 104 304 255 HOH HOH B . G 3 HOH 105 305 256 HOH HOH B . G 3 HOH 106 306 257 HOH HOH B . G 3 HOH 107 307 258 HOH HOH B . G 3 HOH 108 308 259 HOH HOH B . G 3 HOH 109 309 263 HOH HOH B . G 3 HOH 110 310 264 HOH HOH B . G 3 HOH 111 311 266 HOH HOH B . G 3 HOH 112 312 267 HOH HOH B . G 3 HOH 113 313 268 HOH HOH B . G 3 HOH 114 314 269 HOH HOH B . G 3 HOH 115 315 274 HOH HOH B . G 3 HOH 116 316 275 HOH HOH B . G 3 HOH 117 317 278 HOH HOH B . G 3 HOH 118 318 281 HOH HOH B . G 3 HOH 119 319 284 HOH HOH B . G 3 HOH 120 320 285 HOH HOH B . G 3 HOH 121 321 286 HOH HOH B . G 3 HOH 122 322 289 HOH HOH B . G 3 HOH 123 323 292 HOH HOH B . G 3 HOH 124 324 300 HOH HOH B . G 3 HOH 125 325 301 HOH HOH B . G 3 HOH 126 326 304 HOH HOH B . G 3 HOH 127 327 308 HOH HOH B . G 3 HOH 128 328 311 HOH HOH B . G 3 HOH 129 329 313 HOH HOH B . G 3 HOH 130 330 314 HOH HOH B . G 3 HOH 131 331 316 HOH HOH B . G 3 HOH 132 332 318 HOH HOH B . G 3 HOH 133 333 322 HOH HOH B . G 3 HOH 134 334 326 HOH HOH B . G 3 HOH 135 335 327 HOH HOH B . G 3 HOH 136 336 328 HOH HOH B . G 3 HOH 137 337 330 HOH HOH B . G 3 HOH 138 338 332 HOH HOH B . G 3 HOH 139 339 333 HOH HOH B . G 3 HOH 140 340 334 HOH HOH B . G 3 HOH 141 341 342 HOH HOH B . G 3 HOH 142 342 343 HOH HOH B . G 3 HOH 143 343 345 HOH HOH B . G 3 HOH 144 344 346 HOH HOH B . G 3 HOH 145 345 350 HOH HOH B . G 3 HOH 146 346 351 HOH HOH B . G 3 HOH 147 347 352 HOH HOH B . G 3 HOH 148 348 353 HOH HOH B . G 3 HOH 149 349 354 HOH HOH B . G 3 HOH 150 350 355 HOH HOH B . G 3 HOH 151 351 358 HOH HOH B . G 3 HOH 152 352 359 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2290 ? 1 MORE -25 ? 1 'SSA (A^2)' 8330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B GLY 41 ? B GLY 41 ? 1_555 NA ? E NA . ? B NA 103 ? 1_555 O ? G HOH . ? B HOH 308 ? 1_555 96.0 ? 2 O ? B GLY 41 ? B GLY 41 ? 1_555 NA ? E NA . ? B NA 103 ? 1_555 O ? G HOH . ? B HOH 330 ? 1_555 78.4 ? 3 O ? G HOH . ? B HOH 308 ? 1_555 NA ? E NA . ? B NA 103 ? 1_555 O ? G HOH . ? B HOH 330 ? 1_555 166.8 ? 4 O ? B GLY 41 ? B GLY 41 ? 1_555 NA ? E NA . ? B NA 103 ? 1_555 O ? G HOH . ? B HOH 213 ? 1_555 69.2 ? 5 O ? G HOH . ? B HOH 308 ? 1_555 NA ? E NA . ? B NA 103 ? 1_555 O ? G HOH . ? B HOH 213 ? 1_555 94.0 ? 6 O ? G HOH . ? B HOH 330 ? 1_555 NA ? E NA . ? B NA 103 ? 1_555 O ? G HOH . ? B HOH 213 ? 1_555 95.0 ? 7 OE1 ? B GLU 52 ? B GLU 52 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O ? G HOH . ? B HOH 349 ? 1_555 168.5 ? 8 OE1 ? B GLU 52 ? B GLU 52 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O ? G HOH . ? B HOH 343 ? 1_555 81.8 ? 9 O ? G HOH . ? B HOH 349 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O ? G HOH . ? B HOH 343 ? 1_555 88.5 ? 10 O ? B THR 66 ? B THR 66 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 234 ? 1_555 69.6 ? 11 O ? B THR 66 ? B THR 66 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 302 ? 1_555 140.8 ? 12 O ? G HOH . ? B HOH 234 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 302 ? 1_555 130.7 ? 13 O ? B THR 66 ? B THR 66 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 281 ? 1_555 77.7 ? 14 O ? G HOH . ? B HOH 234 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 281 ? 1_555 81.6 ? 15 O ? G HOH . ? B HOH 302 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 281 ? 1_555 74.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-10 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2015-04-08 4 'Structure model' 1 3 2017-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_diffrn_reflns_shell # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_diffrn_reflns_shell.percent_possible_obs' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.680 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 35395 _diffrn_reflns.pdbx_Rmerge_I_obs 0.045 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_percent_possible_obs 95.70 _diffrn_reflns.number 504759 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 1.68 1.73 1795 ? 0.152 ? ? ? 64.30 1 1.73 1.77 2271 ? 0.115 ? ? ? 85.90 1 1.77 1.82 2487 ? 0.104 ? ? ? 95.00 1 1.82 1.88 2434 ? 0.090 ? ? ? 99.20 1 1.88 1.94 2485 ? 0.074 ? ? ? 100.00 1 1.94 2.01 2347 ? 0.063 ? ? ? 99.90 1 2.01 2.09 2260 ? 0.057 ? ? ? 99.80 1 2.09 2.17 2211 ? 0.051 ? ? ? 99.50 1 2.17 2.27 2085 ? 0.049 ? ? ? 100.00 1 2.27 2.38 2021 ? 0.048 ? ? ? 99.70 1 2.38 2.51 1895 ? 0.046 ? ? ? 99.70 1 2.51 2.66 1809 ? 0.046 ? ? ? 99.90 1 2.66 2.84 1674 ? 0.044 ? ? ? 100.00 1 2.84 3.07 1562 ? 0.044 ? ? ? 99.90 1 3.07 3.36 1474 ? 0.042 ? ? ? 99.90 1 3.36 3.76 1309 ? 0.038 ? ? ? 99.50 1 3.76 4.34 1171 ? 0.035 ? ? ? 99.60 1 4.34 5.32 963 ? 0.033 ? ? ? 100.00 1 5.32 7.52 752 ? 0.036 ? ? ? 99.50 1 7.52 17.288 390 ? 0.033 ? ? ? 94.00 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 4 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 DNA . ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 XDS . ? ? ? ? 'data scaling' ? ? ? 9 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HD21 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 30 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 147 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 30 ? A -142.56 17.88 2 1 HIS A 49 ? ? 77.22 -46.37 3 1 SER A 81 ? ? 74.82 -8.01 4 1 HIS B 49 ? ? 77.98 -45.29 5 1 HIS B 49 ? ? 78.54 -45.81 6 1 SER B 81 ? ? 77.37 -13.18 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH #