data_4NEJ # _entry.id 4NEJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NEJ RCSB RCSB083102 WWPDB D_1000083102 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4NEM _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NEJ _pdbx_database_status.recvd_initial_deposition_date 2013-10-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brenke, R.' 1 'Jehle, S.' 2 'Vajda, S.' 3 'Allen, K.N.' 4 'Kozakov, D.' 5 # _citation.id primary _citation.title 'Small molecular fragments bound to binding energy hot-spot in crystal contact interface of Interleukin-2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Brenke, R.' 1 primary 'Jehle, S.' 2 primary 'Vajda, S.' 3 primary 'Allen, K.N.' 4 primary 'Kozakov, D.' 5 # _cell.entry_id 4NEJ _cell.length_a 48.069 _cell.length_b 86.626 _cell.length_c 32.137 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NEJ _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Interleukin-2 15150.617 1 ? ? ? ? 2 non-polymer syn '5-methylfuran-2-carboxylic acid' 126.110 2 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPR DLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFSQSIISTLT ; _entity_poly.pdbx_seq_one_letter_code_can ;SSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPR DLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFSQSIISTLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 SER n 1 4 THR n 1 5 LYS n 1 6 LYS n 1 7 THR n 1 8 GLN n 1 9 LEU n 1 10 GLN n 1 11 LEU n 1 12 GLU n 1 13 HIS n 1 14 LEU n 1 15 LEU n 1 16 LEU n 1 17 ASP n 1 18 LEU n 1 19 GLN n 1 20 MET n 1 21 ILE n 1 22 LEU n 1 23 ASN n 1 24 GLY n 1 25 ILE n 1 26 ASN n 1 27 ASN n 1 28 TYR n 1 29 LYS n 1 30 ASN n 1 31 PRO n 1 32 LYS n 1 33 LEU n 1 34 THR n 1 35 ARG n 1 36 MET n 1 37 LEU n 1 38 THR n 1 39 PHE n 1 40 LYS n 1 41 PHE n 1 42 TYR n 1 43 MET n 1 44 PRO n 1 45 LYS n 1 46 LYS n 1 47 ALA n 1 48 THR n 1 49 GLU n 1 50 LEU n 1 51 LYS n 1 52 HIS n 1 53 LEU n 1 54 GLN n 1 55 CYS n 1 56 LEU n 1 57 GLU n 1 58 GLU n 1 59 GLU n 1 60 LEU n 1 61 LYS n 1 62 PRO n 1 63 LEU n 1 64 GLU n 1 65 GLU n 1 66 VAL n 1 67 LEU n 1 68 ASN n 1 69 LEU n 1 70 ALA n 1 71 GLN n 1 72 SER n 1 73 LYS n 1 74 ASN n 1 75 PHE n 1 76 HIS n 1 77 LEU n 1 78 ARG n 1 79 PRO n 1 80 ARG n 1 81 ASP n 1 82 LEU n 1 83 ILE n 1 84 SER n 1 85 ASN n 1 86 ILE n 1 87 ASN n 1 88 VAL n 1 89 ILE n 1 90 VAL n 1 91 LEU n 1 92 GLU n 1 93 LEU n 1 94 LYS n 1 95 GLY n 1 96 SER n 1 97 GLU n 1 98 THR n 1 99 THR n 1 100 PHE n 1 101 MET n 1 102 CYS n 1 103 GLU n 1 104 TYR n 1 105 ALA n 1 106 ASP n 1 107 GLU n 1 108 THR n 1 109 ALA n 1 110 THR n 1 111 ILE n 1 112 VAL n 1 113 GLU n 1 114 PHE n 1 115 LEU n 1 116 ASN n 1 117 ARG n 1 118 TRP n 1 119 ILE n 1 120 THR n 1 121 PHE n 1 122 SER n 1 123 GLN n 1 124 SER n 1 125 ILE n 1 126 ILE n 1 127 SER n 1 128 THR n 1 129 LEU n 1 130 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6QWN0_HUMAN _struct_ref.pdbx_db_accession Q6QWN0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPR DLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFSQSIISTLT ; _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NEJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6QWN0 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 133 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 133 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2K1 non-polymer . '5-methylfuran-2-carboxylic acid' ? 'C6 H6 O3' 126.110 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NEJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '34% PEG 8K, 0.1 M NaOAc, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-10-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075000 # _reflns.entry_id 4NEJ _reflns.observed_criterion_sigma_I 5.03 _reflns.observed_criterion_sigma_F 23.98 _reflns.d_resolution_low 42.03 _reflns.d_resolution_high 1.919 _reflns.number_obs 10694 _reflns.number_all 10694 _reflns.percent_possible_obs 98.85 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4NEJ _refine.ls_number_reflns_obs 10693 _refine.ls_number_reflns_all 10694 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.03 _refine.ls_d_res_high 1.919 _refine.ls_percent_reflns_obs 98.84 _refine.ls_R_factor_obs 0.2106 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2082 _refine.ls_R_factor_R_free 0.2582 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.79 _refine.ls_number_reflns_R_free 512 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.pdbx_overall_phase_error 28.90 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 957 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 1047 _refine_hist.d_res_high 1.919 _refine_hist.d_res_low 42.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 988 ? 'X-RAY DIFFRACTION' f_angle_d 1.011 ? ? 1329 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 18.018 ? ? 376 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.067 ? ? 160 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 163 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.9185 2.1116 2441 0.1984 96.00 0.3091 . . 103 . . . . 'X-RAY DIFFRACTION' . 2.1116 2.4171 2540 0.1981 100.00 0.2686 . . 116 . . . . 'X-RAY DIFFRACTION' . 2.4171 3.0452 2521 0.2219 100.00 0.2413 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.0452 42.0416 2679 0.2070 99.00 0.2572 . . 137 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NEJ _struct.title 'Small molecular fragment bound to crystal contact interface of Interleukin-2' _struct.pdbx_descriptor Interleukin-2 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NEJ _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'fragment mapping, crystal contact, cytokine, Interleukin-2, helix-bundle, CD25, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ASN A 27 ? SER A 4 ASN A 30 1 ? 27 HELX_P HELX_P2 2 LYS A 29 ? LEU A 37 ? LYS A 32 LEU A 40 1 ? 9 HELX_P HELX_P3 3 GLU A 49 ? HIS A 52 ? GLU A 52 HIS A 55 5 ? 4 HELX_P HELX_P4 4 LEU A 53 ? GLN A 71 ? LEU A 56 GLN A 74 1 ? 19 HELX_P HELX_P5 5 LEU A 82 ? GLY A 95 ? LEU A 85 GLY A 98 1 ? 14 HELX_P HELX_P6 6 THR A 110 ? SER A 127 ? THR A 113 SER A 130 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 55 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 102 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 58 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 105 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE 2K1 A 201' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE 2K1 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HIS A 13 ? HIS A 16 . ? 4_556 ? 2 AC1 10 LEU A 16 ? LEU A 19 . ? 4_556 ? 3 AC1 10 ASP A 17 ? ASP A 20 . ? 4_556 ? 4 AC1 10 MET A 20 ? MET A 23 . ? 4_556 ? 5 AC1 10 THR A 38 ? THR A 41 . ? 1_555 ? 6 AC1 10 PHE A 39 ? PHE A 42 . ? 1_555 ? 7 AC1 10 LYS A 40 ? LYS A 43 . ? 1_555 ? 8 AC1 10 PHE A 41 ? PHE A 44 . ? 1_555 ? 9 AC1 10 ASN A 85 ? ASN A 88 . ? 4_556 ? 10 AC1 10 HOH D . ? HOH A 330 . ? 1_555 ? 11 AC2 6 GLU A 12 ? GLU A 15 . ? 1_555 ? 12 AC2 6 ARG A 35 ? ARG A 38 . ? 4_456 ? 13 AC2 6 PHE A 39 ? PHE A 42 . ? 4_456 ? 14 AC2 6 VAL A 66 ? VAL A 69 . ? 4_456 ? 15 AC2 6 LEU A 69 ? LEU A 72 . ? 4_456 ? 16 AC2 6 ALA A 70 ? ALA A 73 . ? 4_456 ? # _database_PDB_matrix.entry_id 4NEJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NEJ _atom_sites.fract_transf_matrix[1][1] 0.020803 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011544 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031117 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 4 4 SER SER A . n A 1 2 SER 2 5 5 SER SER A . n A 1 3 SER 3 6 6 SER SER A . n A 1 4 THR 4 7 7 THR THR A . n A 1 5 LYS 5 8 8 LYS LYS A . n A 1 6 LYS 6 9 9 LYS LYS A . n A 1 7 THR 7 10 10 THR THR A . n A 1 8 GLN 8 11 11 GLN GLN A . n A 1 9 LEU 9 12 12 LEU LEU A . n A 1 10 GLN 10 13 13 GLN GLN A . n A 1 11 LEU 11 14 14 LEU LEU A . n A 1 12 GLU 12 15 15 GLU GLU A . n A 1 13 HIS 13 16 16 HIS HIS A . n A 1 14 LEU 14 17 17 LEU LEU A . n A 1 15 LEU 15 18 18 LEU LEU A . n A 1 16 LEU 16 19 19 LEU LEU A . n A 1 17 ASP 17 20 20 ASP ASP A . n A 1 18 LEU 18 21 21 LEU LEU A . n A 1 19 GLN 19 22 22 GLN GLN A . n A 1 20 MET 20 23 23 MET MET A . n A 1 21 ILE 21 24 24 ILE ILE A . n A 1 22 LEU 22 25 25 LEU LEU A . n A 1 23 ASN 23 26 26 ASN ASN A . n A 1 24 GLY 24 27 27 GLY GLY A . n A 1 25 ILE 25 28 28 ILE ILE A . n A 1 26 ASN 26 29 29 ASN ASN A . n A 1 27 ASN 27 30 30 ASN ASN A . n A 1 28 TYR 28 31 31 TYR TYR A . n A 1 29 LYS 29 32 32 LYS LYS A . n A 1 30 ASN 30 33 33 ASN ASN A . n A 1 31 PRO 31 34 34 PRO PRO A . n A 1 32 LYS 32 35 35 LYS LYS A . n A 1 33 LEU 33 36 36 LEU LEU A . n A 1 34 THR 34 37 37 THR THR A . n A 1 35 ARG 35 38 38 ARG ARG A . n A 1 36 MET 36 39 39 MET MET A . n A 1 37 LEU 37 40 40 LEU LEU A . n A 1 38 THR 38 41 41 THR THR A . n A 1 39 PHE 39 42 42 PHE PHE A . n A 1 40 LYS 40 43 43 LYS LYS A . n A 1 41 PHE 41 44 44 PHE PHE A . n A 1 42 TYR 42 45 45 TYR TYR A . n A 1 43 MET 43 46 46 MET MET A . n A 1 44 PRO 44 47 47 PRO PRO A . n A 1 45 LYS 45 48 48 LYS LYS A . n A 1 46 LYS 46 49 49 LYS LYS A . n A 1 47 ALA 47 50 50 ALA ALA A . n A 1 48 THR 48 51 51 THR THR A . n A 1 49 GLU 49 52 52 GLU GLU A . n A 1 50 LEU 50 53 53 LEU LEU A . n A 1 51 LYS 51 54 54 LYS LYS A . n A 1 52 HIS 52 55 55 HIS HIS A . n A 1 53 LEU 53 56 56 LEU LEU A . n A 1 54 GLN 54 57 57 GLN GLN A . n A 1 55 CYS 55 58 58 CYS CYS A . n A 1 56 LEU 56 59 59 LEU LEU A . n A 1 57 GLU 57 60 60 GLU GLU A . n A 1 58 GLU 58 61 61 GLU GLU A . n A 1 59 GLU 59 62 62 GLU GLU A . n A 1 60 LEU 60 63 63 LEU LEU A . n A 1 61 LYS 61 64 64 LYS LYS A . n A 1 62 PRO 62 65 65 PRO PRO A . n A 1 63 LEU 63 66 66 LEU LEU A . n A 1 64 GLU 64 67 67 GLU GLU A . n A 1 65 GLU 65 68 68 GLU GLU A . n A 1 66 VAL 66 69 69 VAL VAL A . n A 1 67 LEU 67 70 70 LEU LEU A . n A 1 68 ASN 68 71 71 ASN ASN A . n A 1 69 LEU 69 72 72 LEU LEU A . n A 1 70 ALA 70 73 73 ALA ALA A . n A 1 71 GLN 71 74 74 GLN GLN A . n A 1 72 SER 72 75 75 SER SER A . n A 1 73 LYS 73 76 ? ? ? A . n A 1 74 ASN 74 77 ? ? ? A . n A 1 75 PHE 75 78 ? ? ? A . n A 1 76 HIS 76 79 ? ? ? A . n A 1 77 LEU 77 80 ? ? ? A . n A 1 78 ARG 78 81 ? ? ? A . n A 1 79 PRO 79 82 ? ? ? A . n A 1 80 ARG 80 83 ? ? ? A . n A 1 81 ASP 81 84 84 ASP ASP A . n A 1 82 LEU 82 85 85 LEU LEU A . n A 1 83 ILE 83 86 86 ILE ILE A . n A 1 84 SER 84 87 87 SER SER A . n A 1 85 ASN 85 88 88 ASN ASN A . n A 1 86 ILE 86 89 89 ILE ILE A . n A 1 87 ASN 87 90 90 ASN ASN A . n A 1 88 VAL 88 91 91 VAL VAL A . n A 1 89 ILE 89 92 92 ILE ILE A . n A 1 90 VAL 90 93 93 VAL VAL A . n A 1 91 LEU 91 94 94 LEU LEU A . n A 1 92 GLU 92 95 95 GLU GLU A . n A 1 93 LEU 93 96 96 LEU LEU A . n A 1 94 LYS 94 97 97 LYS LYS A . n A 1 95 GLY 95 98 98 GLY GLY A . n A 1 96 SER 96 99 ? ? ? A . n A 1 97 GLU 97 100 ? ? ? A . n A 1 98 THR 98 101 ? ? ? A . n A 1 99 THR 99 102 ? ? ? A . n A 1 100 PHE 100 103 103 PHE PHE A . n A 1 101 MET 101 104 104 MET MET A . n A 1 102 CYS 102 105 105 CYS CYS A . n A 1 103 GLU 103 106 106 GLU GLU A . n A 1 104 TYR 104 107 107 TYR TYR A . n A 1 105 ALA 105 108 108 ALA ALA A . n A 1 106 ASP 106 109 109 ASP ASP A . n A 1 107 GLU 107 110 110 GLU GLU A . n A 1 108 THR 108 111 111 THR THR A . n A 1 109 ALA 109 112 112 ALA ALA A . n A 1 110 THR 110 113 113 THR THR A . n A 1 111 ILE 111 114 114 ILE ILE A . n A 1 112 VAL 112 115 115 VAL VAL A . n A 1 113 GLU 113 116 116 GLU GLU A . n A 1 114 PHE 114 117 117 PHE PHE A . n A 1 115 LEU 115 118 118 LEU LEU A . n A 1 116 ASN 116 119 119 ASN ASN A . n A 1 117 ARG 117 120 120 ARG ARG A . n A 1 118 TRP 118 121 121 TRP TRP A . n A 1 119 ILE 119 122 122 ILE ILE A . n A 1 120 THR 120 123 123 THR THR A . n A 1 121 PHE 121 124 124 PHE PHE A . n A 1 122 SER 122 125 125 SER SER A . n A 1 123 GLN 123 126 126 GLN GLN A . n A 1 124 SER 124 127 127 SER SER A . n A 1 125 ILE 125 128 128 ILE ILE A . n A 1 126 ILE 126 129 129 ILE ILE A . n A 1 127 SER 127 130 130 SER SER A . n A 1 128 THR 128 131 131 THR THR A . n A 1 129 LEU 129 132 132 LEU LEU A . n A 1 130 THR 130 133 133 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2K1 1 201 1 2K1 1Z8 A . C 2 2K1 1 202 1 2K1 1Z8 A . D 3 HOH 1 301 1 HOH HOH A . D 3 HOH 2 302 2 HOH HOH A . D 3 HOH 3 303 3 HOH HOH A . D 3 HOH 4 304 4 HOH HOH A . D 3 HOH 5 305 5 HOH HOH A . D 3 HOH 6 306 6 HOH HOH A . D 3 HOH 7 307 7 HOH HOH A . D 3 HOH 8 308 8 HOH HOH A . D 3 HOH 9 309 9 HOH HOH A . D 3 HOH 10 310 10 HOH HOH A . D 3 HOH 11 311 11 HOH HOH A . D 3 HOH 12 312 12 HOH HOH A . D 3 HOH 13 313 13 HOH HOH A . D 3 HOH 14 314 14 HOH HOH A . D 3 HOH 15 315 15 HOH HOH A . D 3 HOH 16 316 16 HOH HOH A . D 3 HOH 17 317 17 HOH HOH A . D 3 HOH 18 318 18 HOH HOH A . D 3 HOH 19 319 19 HOH HOH A . D 3 HOH 20 320 20 HOH HOH A . D 3 HOH 21 321 21 HOH HOH A . D 3 HOH 22 322 22 HOH HOH A . D 3 HOH 23 323 23 HOH HOH A . D 3 HOH 24 324 24 HOH HOH A . D 3 HOH 25 325 28 HOH HOH A . D 3 HOH 26 326 30 HOH HOH A . D 3 HOH 27 327 31 HOH HOH A . D 3 HOH 28 328 32 HOH HOH A . D 3 HOH 29 329 33 HOH HOH A . D 3 HOH 30 330 35 HOH HOH A . D 3 HOH 31 331 36 HOH HOH A . D 3 HOH 32 332 37 HOH HOH A . D 3 HOH 33 333 38 HOH HOH A . D 3 HOH 34 334 39 HOH HOH A . D 3 HOH 35 335 41 HOH HOH A . D 3 HOH 36 336 42 HOH HOH A . D 3 HOH 37 337 43 HOH HOH A . D 3 HOH 38 338 44 HOH HOH A . D 3 HOH 39 339 45 HOH HOH A . D 3 HOH 40 340 46 HOH HOH A . D 3 HOH 41 341 47 HOH HOH A . D 3 HOH 42 342 48 HOH HOH A . D 3 HOH 43 343 50 HOH HOH A . D 3 HOH 44 344 51 HOH HOH A . D 3 HOH 45 345 52 HOH HOH A . D 3 HOH 46 346 53 HOH HOH A . D 3 HOH 47 347 54 HOH HOH A . D 3 HOH 48 348 57 HOH HOH A . D 3 HOH 49 349 58 HOH HOH A . D 3 HOH 50 350 59 HOH HOH A . D 3 HOH 51 351 60 HOH HOH A . D 3 HOH 52 352 61 HOH HOH A . D 3 HOH 53 353 62 HOH HOH A . D 3 HOH 54 354 63 HOH HOH A . D 3 HOH 55 355 64 HOH HOH A . D 3 HOH 56 356 66 HOH HOH A . D 3 HOH 57 357 68 HOH HOH A . D 3 HOH 58 358 70 HOH HOH A . D 3 HOH 59 359 71 HOH HOH A . D 3 HOH 60 360 72 HOH HOH A . D 3 HOH 61 361 75 HOH HOH A . D 3 HOH 62 362 77 HOH HOH A . D 3 HOH 63 363 78 HOH HOH A . D 3 HOH 64 364 79 HOH HOH A . D 3 HOH 65 365 80 HOH HOH A . D 3 HOH 66 366 82 HOH HOH A . D 3 HOH 67 367 83 HOH HOH A . D 3 HOH 68 368 84 HOH HOH A . D 3 HOH 69 369 85 HOH HOH A . D 3 HOH 70 370 86 HOH HOH A . D 3 HOH 71 371 87 HOH HOH A . D 3 HOH 72 372 88 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 354 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-11-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 76 ? A LYS 73 2 1 Y 1 A ASN 77 ? A ASN 74 3 1 Y 1 A PHE 78 ? A PHE 75 4 1 Y 1 A HIS 79 ? A HIS 76 5 1 Y 1 A LEU 80 ? A LEU 77 6 1 Y 1 A ARG 81 ? A ARG 78 7 1 Y 1 A PRO 82 ? A PRO 79 8 1 Y 1 A ARG 83 ? A ARG 80 9 1 Y 1 A SER 99 ? A SER 96 10 1 Y 1 A GLU 100 ? A GLU 97 11 1 Y 1 A THR 101 ? A THR 98 12 1 Y 1 A THR 102 ? A THR 99 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-methylfuran-2-carboxylic acid' 2K1 3 water HOH #