HEADER LYASE 17-NOV-13 4NNC TITLE TERNARY COMPLEX OF OBCA WITH C4-COA ADDUCT AND OXALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OBCA, OXALATE BIOSYNTHETIC COMPONENT A; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 626418; SOURCE 4 STRAIN: BGR1; SOURCE 5 GENE: BGLU_2G18790; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA BARREL PROTEIN, OXLATE BIOSYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.OH,E.GOO,I.HWANG,S.RHEE REVDAT 4 20-SEP-23 4NNC 1 REMARK SEQADV LINK REVDAT 3 07-MAY-14 4NNC 1 JRNL REVDAT 2 23-APR-14 4NNC 1 JRNL REVDAT 1 19-MAR-14 4NNC 0 JRNL AUTH J.OH,E.GOO,I.HWANG,S.RHEE JRNL TITL STRUCTURAL BASIS FOR BACTERIAL QUORUM SENSING-MEDIATED JRNL TITL 2 OXALOGENESIS. JRNL REF J.BIOL.CHEM. V. 289 11465 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24616091 JRNL DOI 10.1074/JBC.M113.543462 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1235 - 5.4878 1.00 2423 156 0.2293 0.2174 REMARK 3 2 5.4878 - 4.3582 1.00 2289 147 0.1780 0.2043 REMARK 3 3 4.3582 - 3.8080 1.00 2246 144 0.1730 0.2047 REMARK 3 4 3.8080 - 3.4601 1.00 2247 146 0.1847 0.2143 REMARK 3 5 3.4601 - 3.2123 1.00 2226 142 0.2037 0.2311 REMARK 3 6 3.2123 - 3.0230 1.00 2199 141 0.2004 0.2756 REMARK 3 7 3.0230 - 2.8717 1.00 2196 141 0.2073 0.2438 REMARK 3 8 2.8717 - 2.7467 0.99 2185 141 0.2162 0.2625 REMARK 3 9 2.7467 - 2.6410 1.00 2210 142 0.2150 0.2679 REMARK 3 10 2.6410 - 2.5499 1.00 2182 140 0.2195 0.2817 REMARK 3 11 2.5499 - 2.4702 0.99 2179 140 0.2109 0.2484 REMARK 3 12 2.4702 - 2.3996 1.00 2176 140 0.2296 0.2908 REMARK 3 13 2.3996 - 2.3364 1.00 2191 141 0.2186 0.2767 REMARK 3 14 2.3364 - 2.2794 0.98 2138 138 0.2431 0.3116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3871 REMARK 3 ANGLE : 1.134 5269 REMARK 3 CHIRALITY : 0.072 592 REMARK 3 PLANARITY : 0.005 686 REMARK 3 DIHEDRAL : 16.294 1440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q270R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.94900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4NNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M K/NA TARTRATE, 0.1M SODIUM REMARK 280 CITRATE, 2M AMMONIUM SULFATE, 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.02850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 87.31700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 87.31700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.54275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 87.31700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 87.31700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.51425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 87.31700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.31700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.54275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 87.31700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.31700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.51425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.02850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.05700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 71 REMARK 465 GLU A 72 REMARK 465 ARG A 73 REMARK 465 LEU A 74 REMARK 465 LEU A 75 REMARK 465 ALA A 76 REMARK 465 GLY A 77 REMARK 465 ASN A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 THR A 83 REMARK 465 ILE A 84 REMARK 465 ARG A 85 REMARK 465 GLN A 86 REMARK 465 ALA A 87 REMARK 465 LEU A 88 REMARK 465 GLU A 89 REMARK 465 ALA A 90 REMARK 465 ALA A 91 REMARK 465 ARG A 92 REMARK 465 TRP A 93 REMARK 465 THR A 94 REMARK 465 ARG A 95 REMARK 465 ARG A 96 REMARK 465 ASP A 97 REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 TRP A 100 REMARK 465 HIS A 101 REMARK 465 PRO A 102 REMARK 465 PRO A 103 REMARK 465 ARG A 104 REMARK 465 LEU A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 ASN A 109 REMARK 465 GLY A 524 REMARK 465 ILE A 525 REMARK 465 LYS A 526 REMARK 465 PRO A 527 REMARK 465 ALA A 528 REMARK 465 ALA A 529 REMARK 465 ARG A 530 REMARK 465 ARG A 531 REMARK 465 GLU A 532 REMARK 465 ARG A 533 REMARK 465 ASP A 534 REMARK 465 PRO A 535 REMARK 465 GLN A 536 REMARK 465 THR A 537 REMARK 465 ALA A 538 REMARK 465 ALA A 539 REMARK 465 GLY A 540 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 523 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 458 NH1 ARG A 507 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 152 OD2 ASP A 411 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 11 -61.14 -124.15 REMARK 500 HIS A 66 44.63 -98.09 REMARK 500 ALA A 111 33.92 -86.48 REMARK 500 GLU A 149 45.81 -109.04 REMARK 500 ASP A 281 64.16 -102.54 REMARK 500 LEU A 294 68.35 -100.39 REMARK 500 PRO A 311 40.20 -77.56 REMARK 500 SER A 358 -94.77 -118.54 REMARK 500 PRO A 451 10.54 -65.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 601 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS A 224 NE2 103.2 REMARK 620 3 GLU A 473 OE1 115.1 95.3 REMARK 620 4 OXL A 602 O4 161.5 92.6 72.3 REMARK 620 5 2KQ A 603 O51 97.6 158.2 81.7 65.9 REMARK 620 6 2KQ A 603 O54 86.6 95.8 152.4 82.1 78.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2KQ A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NNA RELATED DB: PDB REMARK 900 RELATED ID: 4NNB RELATED DB: PDB DBREF 4NNC A 1 540 UNP C5AJX5 C5AJX5_BURGB 1 540 SEQADV 4NNC GLY A -1 UNP C5AJX5 EXPRESSION TAG SEQADV 4NNC HIS A 0 UNP C5AJX5 EXPRESSION TAG SEQRES 1 A 542 GLY HIS MET THR SER LEU TYR ILE THR ALA ALA PRO ILE SEQRES 2 A 542 GLY ALA VAL PRO LYS PHE LEU ASP PRO PHE GLU ALA THR SEQRES 3 A 542 PHE ILE PRO SER PHE LEU LEU GLU GLY PHE PHE ASP ALA SEQRES 4 A 542 ASP ARG CYS ALA SER ILE ALA ALA ASP LEU LYS THR ASP SEQRES 5 A 542 GLY TRP GLU VAL VAL PRO ALA GLY GLY ARG LEU LEU GLN SEQRES 6 A 542 VAL GLY HIS ALA GLN PRO ILE ASP GLU ARG LEU LEU ALA SEQRES 7 A 542 GLY ASN ALA GLN ALA ALA THR ILE ARG GLN ALA LEU GLU SEQRES 8 A 542 ALA ALA ARG TRP THR ARG ARG ASP GLY ALA TRP HIS PRO SEQRES 9 A 542 PRO ARG LEU ALA ALA PRO ASN ALA ALA HIS PHE PRO LYS SEQRES 10 A 542 PRO TRP LEU ALA ALA LEU SER ASN LYS LEU ALA ARG ARG SEQRES 11 A 542 ILE VAL LEU GLN LEU THR THR TYR GLY TRP ILE VAL SER SEQRES 12 A 542 GLU GLN GLY ASP LEU LEU TRP GLU HIS GLU ARG GLN HIS SEQRES 13 A 542 HIS TYR LEU PRO PRO ALA LEU ILE GLU ALA ILE GLU LYS SEQRES 14 A 542 GLU SER PRO ALA LEU LEU LYS ASN MET GLU GLU ALA GLY SEQRES 15 A 542 TRP ILE ALA CYS ALA ALA GLY TYR TRP GLN ALA GLY LYS SEQRES 16 A 542 ALA ARG SER PRO TYR LEU PRO ILE THR PRO GLU ALA ILE SEQRES 17 A 542 THR GLU GLU THR ILE ARG SER MET ARG ALA GLY ALA ALA SEQRES 18 A 542 VAL VAL HIS LEU HIS THR ARG ASP LEU SER ASP ARG ARG SEQRES 19 A 542 ARG ILE GLU ILE PRO GLY LEU GLY VAL VAL THR VAL GLY SEQRES 20 A 542 SER GLN ARG ASN GLN ILE VAL LEU ASP ASP TYR ASP ALA SEQRES 21 A 542 ILE VAL PRO MET VAL LYS LYS ARG GLU PRO ALA ALA ILE SEQRES 22 A 542 LEU ASN LEU SER THR SER VAL ARG GLY ASP ARG HIS GLY SEQRES 23 A 542 ALA ARG SER LYS LEU ARG ARG ALA HIS LEU LYS PHE TYR SEQRES 24 A 542 ASP ASP VAL GLY SER ALA PRO GLU VAL ALA SER LEU SER SEQRES 25 A 542 PRO ALA ALA VAL VAL PHE GLN GLY GLY GLY GLY TYR ASP SEQRES 26 A 542 ASN ALA PRO ASP PHE LEU ASP ALA GLN PHE ASP HIS PHE SEQRES 27 A 542 GLU ARG VAL GLY THR ARG PRO GLU VAL GLU VAL PHE ASN SEQRES 28 A 542 HIS ALA ILE VAL ASP ASN ALA THR SER LEU TYR ARG ASP SEQRES 29 A 542 ARG LEU LEU ARG THR GLY LYS PRO VAL LEU PHE MET LEU SEQRES 30 A 542 VAL ALA GLY VAL ASP GLN TYR ARG ARG ASP PRO ILE THR SEQRES 31 A 542 GLY GLU VAL GLU ASP ASP SER LEU ILE ALA ARG VAL VAL SEQRES 32 A 542 ARG GLU GLU ILE SER SER LEU LEU ALA ASP GLU SER ALA SEQRES 33 A 542 ASP SER HIS ARG ARG ALA VAL GLU LEU ALA ILE GLY GLN SEQRES 34 A 542 LEU ARG PRO VAL VAL GLU ARG LEU ARG ALA SER PHE PRO SEQRES 35 A 542 VAL SER LYS ILE SER ILE LEU LEU PRO GLY PRO MET GLN SEQRES 36 A 542 ASN LEU LEU VAL ASP VAL ALA LEU GLY LEU GLY LEU ASP SEQRES 37 A 542 GLY ILE ARG VAL GLY LEU GLU ASP GLY LEU THR VAL ASN SEQRES 38 A 542 ASP ALA ARG VAL PRO GLY GLY VAL ARG LYS ALA ARG GLY SEQRES 39 A 542 THR TRP GLU GLN VAL SER LEU VAL ARG GLU GLU LEU LEU SEQRES 40 A 542 GLY ARG GLY ALA THR ILE LEU THR ALA ALA GLN VAL ARG SEQRES 41 A 542 ASP MET PHE GLY LEU GLY ILE LYS PRO ALA ALA ARG ARG SEQRES 42 A 542 GLU ARG ASP PRO GLN THR ALA ALA GLY HET CO A 601 1 HET OXL A 602 6 HET 2KQ A 603 55 HETNAM CO COBALT (II) ION HETNAM OXL OXALATE ION HETNAM 2KQ (3S)-3-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN- HETNAM 2 2KQ 9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY- HETNAM 3 2KQ OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3,3- HETNAM 4 2KQ DIMETHYL-2-OXIDANYL- HETNAM 5 2KQ BUTANOYL]AMINO]PROPANOYLAMINO]ETHYLSULFANYL]-3- HETNAM 6 2KQ OXIDANYL-BUTANOIC ACID FORMUL 2 CO CO 2+ FORMUL 3 OXL C2 O4 2- FORMUL 4 2KQ C25 H42 N7 O19 P3 S FORMUL 5 HOH *144(H2 O) HELIX 1 1 SER A 28 PHE A 35 1 8 HELIX 2 2 ASP A 36 ASP A 50 1 15 HELIX 3 3 PRO A 114 ALA A 120 1 7 HELIX 4 4 SER A 122 TYR A 136 1 15 HELIX 5 5 PRO A 158 SER A 169 1 12 HELIX 6 6 SER A 169 ALA A 179 1 11 HELIX 7 7 THR A 202 ALA A 216 1 15 HELIX 8 8 VAL A 252 GLU A 267 1 16 HELIX 9 9 ASP A 281 ALA A 285 5 5 HELIX 10 10 LYS A 288 HIS A 293 1 6 HELIX 11 11 ALA A 325 GLY A 340 1 16 HELIX 12 12 ASN A 349 SER A 358 1 10 HELIX 13 13 TYR A 360 THR A 367 1 8 HELIX 14 14 ALA A 398 ALA A 410 1 13 HELIX 15 15 SER A 413 PHE A 439 1 27 HELIX 16 16 PRO A 449 ASN A 454 5 6 HELIX 17 17 LEU A 455 LEU A 463 1 9 HELIX 18 18 GLY A 492 GLY A 506 1 15 HELIX 19 19 THR A 513 GLY A 522 1 10 SHEET 1 A10 THR A 510 ILE A 511 0 SHEET 2 A10 SER A 3 ALA A 8 1 N LEU A 4 O THR A 510 SHEET 3 A10 GLY A 467 VAL A 470 1 O ILE A 468 N THR A 7 SHEET 4 A10 SER A 442 LEU A 447 1 N ILE A 446 O ARG A 469 SHEET 5 A10 VAL A 371 VAL A 376 1 N LEU A 375 O SER A 445 SHEET 6 A10 ARG A 342 VAL A 347 1 N VAL A 347 O MET A 374 SHEET 7 A10 VAL A 306 LEU A 309 1 N ALA A 307 O GLU A 344 SHEET 8 A10 ILE A 271 LEU A 274 1 N LEU A 272 O VAL A 306 SHEET 9 A10 VAL A 220 LEU A 223 1 N LEU A 223 O ASN A 273 SHEET 10 A10 SER A 3 ALA A 8 1 N ALA A 8 O HIS A 222 SHEET 1 B 2 LYS A 16 PHE A 17 0 SHEET 2 B 2 ARG A 195 SER A 196 1 O SER A 196 N LYS A 16 SHEET 1 C 3 PHE A 25 PRO A 27 0 SHEET 2 C 3 GLY A 187 GLN A 190 -1 O TYR A 188 N ILE A 26 SHEET 3 C 3 TRP A 52 VAL A 55 -1 N GLU A 53 O TRP A 189 SHEET 1 D 3 GLN A 153 LEU A 157 0 SHEET 2 D 3 ARG A 60 VAL A 64 -1 N LEU A 62 O HIS A 155 SHEET 3 D 3 ILE A 182 ALA A 183 -1 O ILE A 182 N LEU A 61 SHEET 1 E 3 HIS A 112 PHE A 113 0 SHEET 2 E 3 LEU A 146 LEU A 147 -1 O LEU A 146 N PHE A 113 SHEET 3 E 3 ILE A 139 VAL A 140 -1 N ILE A 139 O LEU A 147 SHEET 1 F 2 ARG A 226 ASP A 227 0 SHEET 2 F 2 ARG A 248 ASN A 249 -1 O ARG A 248 N ASP A 227 SHEET 1 G 2 ARG A 232 ILE A 236 0 SHEET 2 G 2 GLY A 240 VAL A 244 -1 O GLY A 240 N ILE A 236 SHEET 1 H 3 VAL A 315 PHE A 316 0 SHEET 2 H 3 GLN A 381 ARG A 384 -1 O TYR A 382 N VAL A 315 SHEET 3 H 3 VAL A 391 ASP A 393 -1 O GLU A 392 N ARG A 383 SHEET 1 I 2 THR A 477 ASN A 479 0 SHEET 2 I 2 VAL A 487 LYS A 489 -1 O ARG A 488 N VAL A 478 LINK NE2 HIS A 222 CO CO A 601 1555 1555 2.20 LINK NE2 HIS A 224 CO CO A 601 1555 1555 2.03 LINK OE1 GLU A 473 CO CO A 601 1555 1555 2.18 LINK CO CO A 601 O4 OXL A 602 1555 1555 2.77 LINK CO CO A 601 O51 2KQ A 603 1555 1555 1.71 LINK CO CO A 601 O54 2KQ A 603 1555 1555 2.24 CISPEP 1 LYS A 369 PRO A 370 0 -1.44 SITE 1 AC1 5 HIS A 222 HIS A 224 GLU A 473 OXL A 602 SITE 2 AC1 5 2KQ A 603 SITE 1 AC2 9 HIS A 224 SER A 277 ARG A 279 TYR A 322 SITE 2 AC2 9 PHE A 348 GLU A 473 CO A 601 2KQ A 603 SITE 3 AC2 9 HOH A 844 SITE 1 AC3 24 VAL A 14 ARG A 127 LEU A 131 LYS A 193 SITE 2 AC3 24 HIS A 222 HIS A 224 SER A 275 SER A 277 SITE 3 AC3 24 ARG A 279 SER A 308 GLU A 346 PHE A 348 SITE 4 AC3 24 PRO A 449 PRO A 451 ARG A 469 GLU A 473 SITE 5 AC3 24 ASP A 474 LEU A 476 VAL A 487 CO A 601 SITE 6 AC3 24 OXL A 602 HOH A 725 HOH A 729 HOH A 819 CRYST1 174.634 174.634 46.057 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021712 0.00000