data_4NR9 # _entry.id 4NR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NR9 pdb_00004nr9 10.2210/pdb4nr9/pdb RCSB RCSB083556 ? ? WWPDB D_1000083556 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NRA . unspecified PDB 4NRB . unspecified PDB 4NRC . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NR9 _pdbx_database_status.recvd_initial_deposition_date 2013-11-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chaikuad, A.' 1 'Felletar, I.' 2 'von Delft, F.' 3 'Arrowsmith, C.H.' 4 'Edwards, A.M.' 5 'Bountra, C.' 6 'Knapp, S.' 7 'Structural Genomics Consortium (SGC)' 8 # _citation.id primary _citation.title 'Targeting low-druggability bromodomains: fragment based screening and inhibitor design against the BAZ2B bromodomain.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 56 _citation.page_first 10183 _citation.page_last 10187 _citation.year 2013 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24304323 _citation.pdbx_database_id_DOI 10.1021/jm401582c # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ferguson, F.M.' 1 ? primary 'Fedorov, O.' 2 ? primary 'Chaikuad, A.' 3 ? primary 'Philpott, M.' 4 ? primary 'Muniz, J.R.' 5 ? primary 'Felletar, I.' 6 ? primary 'von Delft, F.' 7 ? primary 'Heightman, T.' 8 ? primary 'Knapp, S.' 9 ? primary 'Abell, C.' 10 ? primary 'Ciulli, A.' 11 ? # _cell.entry_id 4NR9 _cell.length_a 82.439 _cell.length_b 96.754 _cell.length_c 57.754 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NR9 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain adjacent to zinc finger domain protein 2B' 13618.652 1 ? ? 'Bromodomain (UNP residues 2054-2168)' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 3 non-polymer syn 'N(6)-ACETYLLYSINE' 188.224 1 ? ? ? ? 4 water nat water 18.015 165 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hWALp4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS ; _entity_poly.pdbx_seq_one_letter_code_can ;SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 SER n 1 4 VAL n 1 5 LYS n 1 6 LYS n 1 7 PRO n 1 8 LYS n 1 9 ARG n 1 10 ASP n 1 11 ASP n 1 12 SER n 1 13 LYS n 1 14 ASP n 1 15 LEU n 1 16 ALA n 1 17 LEU n 1 18 CYS n 1 19 SER n 1 20 MET n 1 21 ILE n 1 22 LEU n 1 23 THR n 1 24 GLU n 1 25 MET n 1 26 GLU n 1 27 THR n 1 28 HIS n 1 29 GLU n 1 30 ASP n 1 31 ALA n 1 32 TRP n 1 33 PRO n 1 34 PHE n 1 35 LEU n 1 36 LEU n 1 37 PRO n 1 38 VAL n 1 39 ASN n 1 40 LEU n 1 41 LYS n 1 42 LEU n 1 43 VAL n 1 44 PRO n 1 45 GLY n 1 46 TYR n 1 47 LYS n 1 48 LYS n 1 49 VAL n 1 50 ILE n 1 51 LYS n 1 52 LYS n 1 53 PRO n 1 54 MET n 1 55 ASP n 1 56 PHE n 1 57 SER n 1 58 THR n 1 59 ILE n 1 60 ARG n 1 61 GLU n 1 62 LYS n 1 63 LEU n 1 64 SER n 1 65 SER n 1 66 GLY n 1 67 GLN n 1 68 TYR n 1 69 PRO n 1 70 ASN n 1 71 LEU n 1 72 GLU n 1 73 THR n 1 74 PHE n 1 75 ALA n 1 76 LEU n 1 77 ASP n 1 78 VAL n 1 79 ARG n 1 80 LEU n 1 81 VAL n 1 82 PHE n 1 83 ASP n 1 84 ASN n 1 85 CYS n 1 86 GLU n 1 87 THR n 1 88 PHE n 1 89 ASN n 1 90 GLU n 1 91 ASP n 1 92 ASP n 1 93 SER n 1 94 ASP n 1 95 ILE n 1 96 GLY n 1 97 ARG n 1 98 ALA n 1 99 GLY n 1 100 HIS n 1 101 ASN n 1 102 MET n 1 103 ARG n 1 104 LYS n 1 105 TYR n 1 106 PHE n 1 107 GLU n 1 108 LYS n 1 109 LYS n 1 110 TRP n 1 111 THR n 1 112 ASP n 1 113 THR n 1 114 PHE n 1 115 LYS n 1 116 VAL n 1 117 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BAZ2B, KIAA1476' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BAZ2B_HUMAN _struct_ref.pdbx_db_accession Q9UIF8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS ; _struct_ref.pdbx_align_begin 2054 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NR9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UIF8 _struct_ref_seq.db_align_beg 2054 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1858 _struct_ref_seq.pdbx_auth_seq_align_end 1972 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NR9 SER A 1 ? UNP Q9UIF8 ? ? 'expression tag' 1856 1 1 4NR9 MET A 2 ? UNP Q9UIF8 ? ? 'expression tag' 1857 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALY 'L-peptide linking' n 'N(6)-ACETYLLYSINE' ? 'C8 H16 N2 O3' 188.224 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NR9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.23 _exptl_crystal.density_percent_sol 70.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% low MW PEG Smears, 0.1M MES pH 6.7, 15%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2011-11-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Flat graphite crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4NR9 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 19.67 _reflns.d_resolution_high 1.98 _reflns.number_obs 16407 _reflns.number_all 16437 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.98 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.716 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4NR9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15575 _refine.ls_number_reflns_all 16407 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.50 _refine.ls_d_res_high 1.98 _refine.ls_percent_reflns_obs 99.69 _refine.ls_R_factor_obs 0.19296 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19090 _refine.ls_R_factor_R_free 0.23335 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 830 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 41.368 _refine.aniso_B[1][1] 2.67 _refine.aniso_B[2][2] -0.68 _refine.aniso_B[3][3] -1.99 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'pdb entry 3G0L' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.104 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.871 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4NR9 _refine_analyze.Luzzati_coordinate_error_obs 0.255 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 941 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 1135 _refine_hist.d_res_high 1.98 _refine_hist.d_res_low 19.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.020 ? 992 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 958 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.633 1.991 ? 1326 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.816 3.000 ? 2224 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.701 5.000 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.473 24.545 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.086 15.000 ? 186 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.661 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 142 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1069 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 210 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.961 2.524 ? 468 'X-RAY DIFFRACTION' ? r_mcbond_other 1.937 2.500 ? 464 'X-RAY DIFFRACTION' ? r_mcangle_it 2.771 3.755 ? 582 'X-RAY DIFFRACTION' ? r_mcangle_other 2.760 3.752 ? 581 'X-RAY DIFFRACTION' ? r_scbond_it 2.524 2.920 ? 524 'X-RAY DIFFRACTION' ? r_scbond_other 2.544 2.924 ? 524 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 3.879 4.192 ? 744 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.676 23.122 ? 1318 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.673 23.174 ? 1319 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.980 _refine_ls_shell.d_res_low 2.031 _refine_ls_shell.number_reflns_R_work 1103 _refine_ls_shell.R_factor_R_work 0.302 _refine_ls_shell.percent_reflns_obs 99.91 _refine_ls_shell.R_factor_R_free 0.335 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4NR9 _struct.title 'Crystal Structure of the bromodomain of human BAZ2B in complex with acetylated lysine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NR9 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'SGC, Structural Genomics Consortium, TRANSCRIPTION, bromodomain, acetylated lysine binding protein, KIAA1476, WALp4' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 13 ? HIS A 28 ? LYS A 1868 HIS A 1883 1 ? 16 HELX_P HELX_P2 2 ALA A 31 ? LEU A 35 ? ALA A 1886 LEU A 1890 5 ? 5 HELX_P HELX_P3 3 GLY A 45 ? ILE A 50 ? GLY A 1900 ILE A 1905 1 ? 6 HELX_P HELX_P4 4 ASP A 55 ? SER A 65 ? ASP A 1910 SER A 1920 1 ? 11 HELX_P HELX_P5 5 ASN A 70 ? ASN A 89 ? ASN A 1925 ASN A 1944 1 ? 20 HELX_P HELX_P6 6 SER A 93 ? LYS A 115 ? SER A 1948 LYS A 1970 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 2001 ? 5 'BINDING SITE FOR RESIDUE EDO A 2001' AC2 Software A EDO 2002 ? 6 'BINDING SITE FOR RESIDUE EDO A 2002' AC3 Software A EDO 2003 ? 3 'BINDING SITE FOR RESIDUE EDO A 2003' AC4 Software A ALY 2005 ? 9 'BINDING SITE FOR RESIDUE ALY A 2005' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 VAL A 38 ? VAL A 1893 . ? 1_555 ? 2 AC1 5 ASN A 39 ? ASN A 1894 . ? 1_555 ? 3 AC1 5 LEU A 40 ? LEU A 1895 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 2182 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 2227 . ? 1_555 ? 6 AC2 6 ASN A 70 ? ASN A 1925 . ? 1_555 ? 7 AC2 6 GLU A 72 ? GLU A 1927 . ? 1_555 ? 8 AC2 6 THR A 73 ? THR A 1928 . ? 1_555 ? 9 AC2 6 LEU A 76 ? LEU A 1931 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 2239 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 2250 . ? 1_555 ? 12 AC3 3 MET A 20 ? MET A 1875 . ? 1_555 ? 13 AC3 3 GLU A 24 ? GLU A 1879 . ? 1_555 ? 14 AC3 3 LYS A 109 ? LYS A 1964 . ? 1_555 ? 15 AC4 9 PRO A 33 ? PRO A 1888 . ? 1_555 ? 16 AC4 9 VAL A 38 ? VAL A 1893 . ? 1_555 ? 17 AC4 9 PRO A 44 ? PRO A 1899 . ? 4_565 ? 18 AC4 9 ASN A 89 ? ASN A 1944 . ? 1_555 ? 19 AC4 9 HOH G . ? HOH A 2154 . ? 1_555 ? 20 AC4 9 HOH G . ? HOH A 2174 . ? 1_555 ? 21 AC4 9 HOH G . ? HOH A 2183 . ? 1_555 ? 22 AC4 9 HOH G . ? HOH A 2195 . ? 1_555 ? 23 AC4 9 HOH G . ? HOH A 2261 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NR9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NR9 _atom_sites.fract_transf_matrix[1][1] 0.012130 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017315 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1856 1856 SER SER A . n A 1 2 MET 2 1857 1857 MET MET A . n A 1 3 SER 3 1858 1858 SER SER A . n A 1 4 VAL 4 1859 1859 VAL VAL A . n A 1 5 LYS 5 1860 1860 LYS LYS A . n A 1 6 LYS 6 1861 1861 LYS LYS A . n A 1 7 PRO 7 1862 1862 PRO PRO A . n A 1 8 LYS 8 1863 1863 LYS LYS A . n A 1 9 ARG 9 1864 1864 ARG ARG A . n A 1 10 ASP 10 1865 1865 ASP ASP A . n A 1 11 ASP 11 1866 1866 ASP ASP A . n A 1 12 SER 12 1867 1867 SER SER A . n A 1 13 LYS 13 1868 1868 LYS LYS A . n A 1 14 ASP 14 1869 1869 ASP ASP A . n A 1 15 LEU 15 1870 1870 LEU LEU A . n A 1 16 ALA 16 1871 1871 ALA ALA A . n A 1 17 LEU 17 1872 1872 LEU LEU A . n A 1 18 CYS 18 1873 1873 CYS CYS A . n A 1 19 SER 19 1874 1874 SER SER A . n A 1 20 MET 20 1875 1875 MET MET A . n A 1 21 ILE 21 1876 1876 ILE ILE A . n A 1 22 LEU 22 1877 1877 LEU LEU A . n A 1 23 THR 23 1878 1878 THR THR A . n A 1 24 GLU 24 1879 1879 GLU GLU A . n A 1 25 MET 25 1880 1880 MET MET A . n A 1 26 GLU 26 1881 1881 GLU GLU A . n A 1 27 THR 27 1882 1882 THR THR A . n A 1 28 HIS 28 1883 1883 HIS HIS A . n A 1 29 GLU 29 1884 1884 GLU GLU A . n A 1 30 ASP 30 1885 1885 ASP ASP A . n A 1 31 ALA 31 1886 1886 ALA ALA A . n A 1 32 TRP 32 1887 1887 TRP TRP A . n A 1 33 PRO 33 1888 1888 PRO PRO A . n A 1 34 PHE 34 1889 1889 PHE PHE A . n A 1 35 LEU 35 1890 1890 LEU LEU A . n A 1 36 LEU 36 1891 1891 LEU LEU A . n A 1 37 PRO 37 1892 1892 PRO PRO A . n A 1 38 VAL 38 1893 1893 VAL VAL A . n A 1 39 ASN 39 1894 1894 ASN ASN A . n A 1 40 LEU 40 1895 1895 LEU LEU A . n A 1 41 LYS 41 1896 1896 LYS LYS A . n A 1 42 LEU 42 1897 1897 LEU LEU A . n A 1 43 VAL 43 1898 1898 VAL VAL A . n A 1 44 PRO 44 1899 1899 PRO PRO A . n A 1 45 GLY 45 1900 1900 GLY GLY A . n A 1 46 TYR 46 1901 1901 TYR TYR A . n A 1 47 LYS 47 1902 1902 LYS LYS A . n A 1 48 LYS 48 1903 1903 LYS LYS A . n A 1 49 VAL 49 1904 1904 VAL VAL A . n A 1 50 ILE 50 1905 1905 ILE ILE A . n A 1 51 LYS 51 1906 1906 LYS LYS A . n A 1 52 LYS 52 1907 1907 LYS LYS A . n A 1 53 PRO 53 1908 1908 PRO PRO A . n A 1 54 MET 54 1909 1909 MET MET A . n A 1 55 ASP 55 1910 1910 ASP ASP A . n A 1 56 PHE 56 1911 1911 PHE PHE A . n A 1 57 SER 57 1912 1912 SER SER A . n A 1 58 THR 58 1913 1913 THR THR A . n A 1 59 ILE 59 1914 1914 ILE ILE A . n A 1 60 ARG 60 1915 1915 ARG ARG A . n A 1 61 GLU 61 1916 1916 GLU GLU A . n A 1 62 LYS 62 1917 1917 LYS LYS A . n A 1 63 LEU 63 1918 1918 LEU LEU A . n A 1 64 SER 64 1919 1919 SER SER A . n A 1 65 SER 65 1920 1920 SER SER A . n A 1 66 GLY 66 1921 1921 GLY GLY A . n A 1 67 GLN 67 1922 1922 GLN GLN A . n A 1 68 TYR 68 1923 1923 TYR TYR A . n A 1 69 PRO 69 1924 1924 PRO PRO A . n A 1 70 ASN 70 1925 1925 ASN ASN A . n A 1 71 LEU 71 1926 1926 LEU LEU A . n A 1 72 GLU 72 1927 1927 GLU GLU A . n A 1 73 THR 73 1928 1928 THR THR A . n A 1 74 PHE 74 1929 1929 PHE PHE A . n A 1 75 ALA 75 1930 1930 ALA ALA A . n A 1 76 LEU 76 1931 1931 LEU LEU A . n A 1 77 ASP 77 1932 1932 ASP ASP A . n A 1 78 VAL 78 1933 1933 VAL VAL A . n A 1 79 ARG 79 1934 1934 ARG ARG A . n A 1 80 LEU 80 1935 1935 LEU LEU A . n A 1 81 VAL 81 1936 1936 VAL VAL A . n A 1 82 PHE 82 1937 1937 PHE PHE A . n A 1 83 ASP 83 1938 1938 ASP ASP A . n A 1 84 ASN 84 1939 1939 ASN ASN A . n A 1 85 CYS 85 1940 1940 CYS CYS A . n A 1 86 GLU 86 1941 1941 GLU GLU A . n A 1 87 THR 87 1942 1942 THR THR A . n A 1 88 PHE 88 1943 1943 PHE PHE A . n A 1 89 ASN 89 1944 1944 ASN ASN A . n A 1 90 GLU 90 1945 1945 GLU GLU A . n A 1 91 ASP 91 1946 1946 ASP ASP A . n A 1 92 ASP 92 1947 1947 ASP ASP A . n A 1 93 SER 93 1948 1948 SER SER A . n A 1 94 ASP 94 1949 1949 ASP ASP A . n A 1 95 ILE 95 1950 1950 ILE ILE A . n A 1 96 GLY 96 1951 1951 GLY GLY A . n A 1 97 ARG 97 1952 1952 ARG ARG A . n A 1 98 ALA 98 1953 1953 ALA ALA A . n A 1 99 GLY 99 1954 1954 GLY GLY A . n A 1 100 HIS 100 1955 1955 HIS HIS A . n A 1 101 ASN 101 1956 1956 ASN ASN A . n A 1 102 MET 102 1957 1957 MET MET A . n A 1 103 ARG 103 1958 1958 ARG ARG A . n A 1 104 LYS 104 1959 1959 LYS LYS A . n A 1 105 TYR 105 1960 1960 TYR TYR A . n A 1 106 PHE 106 1961 1961 PHE PHE A . n A 1 107 GLU 107 1962 1962 GLU GLU A . n A 1 108 LYS 108 1963 1963 LYS LYS A . n A 1 109 LYS 109 1964 1964 LYS LYS A . n A 1 110 TRP 110 1965 1965 TRP TRP A . n A 1 111 THR 111 1966 1966 THR THR A . n A 1 112 ASP 112 1967 1967 ASP ASP A . n A 1 113 THR 113 1968 1968 THR THR A . n A 1 114 PHE 114 1969 1969 PHE PHE A . n A 1 115 LYS 115 1970 1970 LYS LYS A . n A 1 116 VAL 116 1971 1971 VAL VAL A . n A 1 117 SER 117 1972 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 2001 1 EDO EDO A . C 2 EDO 1 2002 1 EDO EDO A . D 2 EDO 1 2003 1 EDO EDO A . E 2 EDO 1 2004 1 EDO EDO A . F 3 ALY 1 2005 1 ALY ALY A . G 4 HOH 1 2101 3 HOH HOH A . G 4 HOH 2 2102 4 HOH HOH A . G 4 HOH 3 2103 5 HOH HOH A . G 4 HOH 4 2104 6 HOH HOH A . G 4 HOH 5 2105 7 HOH HOH A . G 4 HOH 6 2106 9 HOH HOH A . G 4 HOH 7 2107 10 HOH HOH A . G 4 HOH 8 2108 11 HOH HOH A . G 4 HOH 9 2109 12 HOH HOH A . G 4 HOH 10 2110 13 HOH HOH A . G 4 HOH 11 2111 14 HOH HOH A . G 4 HOH 12 2112 15 HOH HOH A . G 4 HOH 13 2113 16 HOH HOH A . G 4 HOH 14 2114 17 HOH HOH A . G 4 HOH 15 2115 18 HOH HOH A . G 4 HOH 16 2116 19 HOH HOH A . G 4 HOH 17 2117 20 HOH HOH A . G 4 HOH 18 2118 21 HOH HOH A . G 4 HOH 19 2119 22 HOH HOH A . G 4 HOH 20 2120 23 HOH HOH A . G 4 HOH 21 2121 24 HOH HOH A . G 4 HOH 22 2122 25 HOH HOH A . G 4 HOH 23 2123 26 HOH HOH A . G 4 HOH 24 2124 27 HOH HOH A . G 4 HOH 25 2125 28 HOH HOH A . G 4 HOH 26 2126 29 HOH HOH A . G 4 HOH 27 2127 30 HOH HOH A . G 4 HOH 28 2128 31 HOH HOH A . G 4 HOH 29 2129 32 HOH HOH A . G 4 HOH 30 2130 33 HOH HOH A . G 4 HOH 31 2131 34 HOH HOH A . G 4 HOH 32 2132 35 HOH HOH A . G 4 HOH 33 2133 38 HOH HOH A . G 4 HOH 34 2134 39 HOH HOH A . G 4 HOH 35 2135 40 HOH HOH A . G 4 HOH 36 2136 41 HOH HOH A . G 4 HOH 37 2137 42 HOH HOH A . G 4 HOH 38 2138 43 HOH HOH A . G 4 HOH 39 2139 44 HOH HOH A . G 4 HOH 40 2140 45 HOH HOH A . G 4 HOH 41 2141 46 HOH HOH A . G 4 HOH 42 2142 47 HOH HOH A . G 4 HOH 43 2143 48 HOH HOH A . G 4 HOH 44 2144 49 HOH HOH A . G 4 HOH 45 2145 50 HOH HOH A . G 4 HOH 46 2146 51 HOH HOH A . G 4 HOH 47 2147 52 HOH HOH A . G 4 HOH 48 2148 53 HOH HOH A . G 4 HOH 49 2149 54 HOH HOH A . G 4 HOH 50 2150 56 HOH HOH A . G 4 HOH 51 2151 57 HOH HOH A . G 4 HOH 52 2152 58 HOH HOH A . G 4 HOH 53 2153 59 HOH HOH A . G 4 HOH 54 2154 60 HOH HOH A . G 4 HOH 55 2155 61 HOH HOH A . G 4 HOH 56 2156 62 HOH HOH A . G 4 HOH 57 2157 63 HOH HOH A . G 4 HOH 58 2158 65 HOH HOH A . G 4 HOH 59 2159 66 HOH HOH A . G 4 HOH 60 2160 67 HOH HOH A . G 4 HOH 61 2161 68 HOH HOH A . G 4 HOH 62 2162 69 HOH HOH A . G 4 HOH 63 2163 70 HOH HOH A . G 4 HOH 64 2164 71 HOH HOH A . G 4 HOH 65 2165 72 HOH HOH A . G 4 HOH 66 2166 73 HOH HOH A . G 4 HOH 67 2167 75 HOH HOH A . G 4 HOH 68 2168 76 HOH HOH A . G 4 HOH 69 2169 77 HOH HOH A . G 4 HOH 70 2170 78 HOH HOH A . G 4 HOH 71 2171 79 HOH HOH A . G 4 HOH 72 2172 80 HOH HOH A . G 4 HOH 73 2173 81 HOH HOH A . G 4 HOH 74 2174 82 HOH HOH A . G 4 HOH 75 2175 83 HOH HOH A . G 4 HOH 76 2176 84 HOH HOH A . G 4 HOH 77 2177 85 HOH HOH A . G 4 HOH 78 2178 86 HOH HOH A . G 4 HOH 79 2179 87 HOH HOH A . G 4 HOH 80 2180 88 HOH HOH A . G 4 HOH 81 2181 89 HOH HOH A . G 4 HOH 82 2182 90 HOH HOH A . G 4 HOH 83 2183 91 HOH HOH A . G 4 HOH 84 2184 92 HOH HOH A . G 4 HOH 85 2185 93 HOH HOH A . G 4 HOH 86 2186 94 HOH HOH A . G 4 HOH 87 2187 95 HOH HOH A . G 4 HOH 88 2188 96 HOH HOH A . G 4 HOH 89 2189 97 HOH HOH A . G 4 HOH 90 2190 98 HOH HOH A . G 4 HOH 91 2191 99 HOH HOH A . G 4 HOH 92 2192 100 HOH HOH A . G 4 HOH 93 2193 101 HOH HOH A . G 4 HOH 94 2194 102 HOH HOH A . G 4 HOH 95 2195 103 HOH HOH A . G 4 HOH 96 2196 104 HOH HOH A . G 4 HOH 97 2197 105 HOH HOH A . G 4 HOH 98 2198 107 HOH HOH A . G 4 HOH 99 2199 108 HOH HOH A . G 4 HOH 100 2200 109 HOH HOH A . G 4 HOH 101 2201 110 HOH HOH A . G 4 HOH 102 2202 111 HOH HOH A . G 4 HOH 103 2203 112 HOH HOH A . G 4 HOH 104 2204 113 HOH HOH A . G 4 HOH 105 2205 114 HOH HOH A . G 4 HOH 106 2206 115 HOH HOH A . G 4 HOH 107 2207 116 HOH HOH A . G 4 HOH 108 2208 117 HOH HOH A . G 4 HOH 109 2209 118 HOH HOH A . G 4 HOH 110 2210 119 HOH HOH A . G 4 HOH 111 2211 120 HOH HOH A . G 4 HOH 112 2212 121 HOH HOH A . G 4 HOH 113 2213 122 HOH HOH A . G 4 HOH 114 2214 123 HOH HOH A . G 4 HOH 115 2215 124 HOH HOH A . G 4 HOH 116 2216 125 HOH HOH A . G 4 HOH 117 2217 126 HOH HOH A . G 4 HOH 118 2218 127 HOH HOH A . G 4 HOH 119 2219 128 HOH HOH A . G 4 HOH 120 2220 129 HOH HOH A . G 4 HOH 121 2221 130 HOH HOH A . G 4 HOH 122 2222 131 HOH HOH A . G 4 HOH 123 2223 132 HOH HOH A . G 4 HOH 124 2224 133 HOH HOH A . G 4 HOH 125 2225 134 HOH HOH A . G 4 HOH 126 2226 135 HOH HOH A . G 4 HOH 127 2227 136 HOH HOH A . G 4 HOH 128 2228 137 HOH HOH A . G 4 HOH 129 2229 138 HOH HOH A . G 4 HOH 130 2230 139 HOH HOH A . G 4 HOH 131 2231 140 HOH HOH A . G 4 HOH 132 2232 141 HOH HOH A . G 4 HOH 133 2233 142 HOH HOH A . G 4 HOH 134 2234 143 HOH HOH A . G 4 HOH 135 2235 144 HOH HOH A . G 4 HOH 136 2236 145 HOH HOH A . G 4 HOH 137 2237 146 HOH HOH A . G 4 HOH 138 2238 148 HOH HOH A . G 4 HOH 139 2239 149 HOH HOH A . G 4 HOH 140 2240 150 HOH HOH A . G 4 HOH 141 2241 151 HOH HOH A . G 4 HOH 142 2242 153 HOH HOH A . G 4 HOH 143 2243 154 HOH HOH A . G 4 HOH 144 2244 155 HOH HOH A . G 4 HOH 145 2245 156 HOH HOH A . G 4 HOH 146 2246 157 HOH HOH A . G 4 HOH 147 2247 158 HOH HOH A . G 4 HOH 148 2248 160 HOH HOH A . G 4 HOH 149 2249 161 HOH HOH A . G 4 HOH 150 2250 162 HOH HOH A . G 4 HOH 151 2251 163 HOH HOH A . G 4 HOH 152 2252 164 HOH HOH A . G 4 HOH 153 2253 165 HOH HOH A . G 4 HOH 154 2254 166 HOH HOH A . G 4 HOH 155 2255 167 HOH HOH A . G 4 HOH 156 2256 168 HOH HOH A . G 4 HOH 157 2257 169 HOH HOH A . G 4 HOH 158 2258 170 HOH HOH A . G 4 HOH 159 2259 171 HOH HOH A . G 4 HOH 160 2260 172 HOH HOH A . G 4 HOH 161 2261 173 HOH HOH A . G 4 HOH 162 2262 174 HOH HOH A . G 4 HOH 163 2263 175 HOH HOH A . G 4 HOH 164 2264 176 HOH HOH A . G 4 HOH 165 2265 177 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-25 2 'Structure model' 1 1 2023-09-20 3 'Structure model' 1 2 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site 7 3 'Structure model' chem_comp_atom 8 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 3 'Structure model' '_chem_comp_atom.atom_id' 8 3 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 36.6610 15.0250 9.6710 0.2308 0.5840 0.2806 0.0084 -0.0222 -0.1658 15.2996 4.6213 0.3315 -0.1123 -2.1746 -0.2089 0.1039 0.5459 -0.7829 -0.2900 -0.2602 -0.7114 -0.0486 -0.0450 0.1563 'X-RAY DIFFRACTION' 2 ? refined 61.3060 29.8430 1.4300 0.0130 0.0310 0.0163 -0.0125 0.0033 -0.0004 3.8866 3.6507 2.7563 1.5053 -0.4000 -0.8545 -0.0259 0.0660 -0.2375 -0.1276 0.0515 -0.1273 -0.0121 -0.1454 -0.0256 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1856 ? ? A 1865 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 1866 ? ? A 1971 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4NR9 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CRYSTALLIZED SEQUENCE CORRESPONDS TO ISOFORM 4' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1863 ? CG ? A LYS 8 CG 2 1 Y 1 A LYS 1863 ? CD ? A LYS 8 CD 3 1 Y 1 A LYS 1863 ? CE ? A LYS 8 CE 4 1 Y 1 A LYS 1863 ? NZ ? A LYS 8 NZ 5 1 Y 1 A VAL 1971 ? CG1 ? A VAL 116 CG1 6 1 Y 1 A VAL 1971 ? CG2 ? A VAL 116 CG2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1972 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 117 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ALY OH O N N 14 ALY CH C N N 15 ALY CH3 C N N 16 ALY NZ N N N 17 ALY CE C N N 18 ALY CD C N N 19 ALY CG C N N 20 ALY CB C N N 21 ALY CA C N S 22 ALY N N N N 23 ALY C C N N 24 ALY O O N N 25 ALY OXT O N N 26 ALY HH31 H N N 27 ALY HH32 H N N 28 ALY HH33 H N N 29 ALY HZ H N N 30 ALY HE3 H N N 31 ALY HE2 H N N 32 ALY HD3 H N N 33 ALY HD2 H N N 34 ALY HG3 H N N 35 ALY HG2 H N N 36 ALY HB3 H N N 37 ALY HB2 H N N 38 ALY HA H N N 39 ALY H H N N 40 ALY H2 H N N 41 ALY HXT H N N 42 ARG N N N N 43 ARG CA C N S 44 ARG C C N N 45 ARG O O N N 46 ARG CB C N N 47 ARG CG C N N 48 ARG CD C N N 49 ARG NE N N N 50 ARG CZ C N N 51 ARG NH1 N N N 52 ARG NH2 N N N 53 ARG OXT O N N 54 ARG H H N N 55 ARG H2 H N N 56 ARG HA H N N 57 ARG HB2 H N N 58 ARG HB3 H N N 59 ARG HG2 H N N 60 ARG HG3 H N N 61 ARG HD2 H N N 62 ARG HD3 H N N 63 ARG HE H N N 64 ARG HH11 H N N 65 ARG HH12 H N N 66 ARG HH21 H N N 67 ARG HH22 H N N 68 ARG HXT H N N 69 ASN N N N N 70 ASN CA C N S 71 ASN C C N N 72 ASN O O N N 73 ASN CB C N N 74 ASN CG C N N 75 ASN OD1 O N N 76 ASN ND2 N N N 77 ASN OXT O N N 78 ASN H H N N 79 ASN H2 H N N 80 ASN HA H N N 81 ASN HB2 H N N 82 ASN HB3 H N N 83 ASN HD21 H N N 84 ASN HD22 H N N 85 ASN HXT H N N 86 ASP N N N N 87 ASP CA C N S 88 ASP C C N N 89 ASP O O N N 90 ASP CB C N N 91 ASP CG C N N 92 ASP OD1 O N N 93 ASP OD2 O N N 94 ASP OXT O N N 95 ASP H H N N 96 ASP H2 H N N 97 ASP HA H N N 98 ASP HB2 H N N 99 ASP HB3 H N N 100 ASP HD2 H N N 101 ASP HXT H N N 102 CYS N N N N 103 CYS CA C N R 104 CYS C C N N 105 CYS O O N N 106 CYS CB C N N 107 CYS SG S N N 108 CYS OXT O N N 109 CYS H H N N 110 CYS H2 H N N 111 CYS HA H N N 112 CYS HB2 H N N 113 CYS HB3 H N N 114 CYS HG H N N 115 CYS HXT H N N 116 EDO C1 C N N 117 EDO O1 O N N 118 EDO C2 C N N 119 EDO O2 O N N 120 EDO H11 H N N 121 EDO H12 H N N 122 EDO HO1 H N N 123 EDO H21 H N N 124 EDO H22 H N N 125 EDO HO2 H N N 126 GLN N N N N 127 GLN CA C N S 128 GLN C C N N 129 GLN O O N N 130 GLN CB C N N 131 GLN CG C N N 132 GLN CD C N N 133 GLN OE1 O N N 134 GLN NE2 N N N 135 GLN OXT O N N 136 GLN H H N N 137 GLN H2 H N N 138 GLN HA H N N 139 GLN HB2 H N N 140 GLN HB3 H N N 141 GLN HG2 H N N 142 GLN HG3 H N N 143 GLN HE21 H N N 144 GLN HE22 H N N 145 GLN HXT H N N 146 GLU N N N N 147 GLU CA C N S 148 GLU C C N N 149 GLU O O N N 150 GLU CB C N N 151 GLU CG C N N 152 GLU CD C N N 153 GLU OE1 O N N 154 GLU OE2 O N N 155 GLU OXT O N N 156 GLU H H N N 157 GLU H2 H N N 158 GLU HA H N N 159 GLU HB2 H N N 160 GLU HB3 H N N 161 GLU HG2 H N N 162 GLU HG3 H N N 163 GLU HE2 H N N 164 GLU HXT H N N 165 GLY N N N N 166 GLY CA C N N 167 GLY C C N N 168 GLY O O N N 169 GLY OXT O N N 170 GLY H H N N 171 GLY H2 H N N 172 GLY HA2 H N N 173 GLY HA3 H N N 174 GLY HXT H N N 175 HIS N N N N 176 HIS CA C N S 177 HIS C C N N 178 HIS O O N N 179 HIS CB C N N 180 HIS CG C Y N 181 HIS ND1 N Y N 182 HIS CD2 C Y N 183 HIS CE1 C Y N 184 HIS NE2 N Y N 185 HIS OXT O N N 186 HIS H H N N 187 HIS H2 H N N 188 HIS HA H N N 189 HIS HB2 H N N 190 HIS HB3 H N N 191 HIS HD1 H N N 192 HIS HD2 H N N 193 HIS HE1 H N N 194 HIS HE2 H N N 195 HIS HXT H N N 196 HOH O O N N 197 HOH H1 H N N 198 HOH H2 H N N 199 ILE N N N N 200 ILE CA C N S 201 ILE C C N N 202 ILE O O N N 203 ILE CB C N S 204 ILE CG1 C N N 205 ILE CG2 C N N 206 ILE CD1 C N N 207 ILE OXT O N N 208 ILE H H N N 209 ILE H2 H N N 210 ILE HA H N N 211 ILE HB H N N 212 ILE HG12 H N N 213 ILE HG13 H N N 214 ILE HG21 H N N 215 ILE HG22 H N N 216 ILE HG23 H N N 217 ILE HD11 H N N 218 ILE HD12 H N N 219 ILE HD13 H N N 220 ILE HXT H N N 221 LEU N N N N 222 LEU CA C N S 223 LEU C C N N 224 LEU O O N N 225 LEU CB C N N 226 LEU CG C N N 227 LEU CD1 C N N 228 LEU CD2 C N N 229 LEU OXT O N N 230 LEU H H N N 231 LEU H2 H N N 232 LEU HA H N N 233 LEU HB2 H N N 234 LEU HB3 H N N 235 LEU HG H N N 236 LEU HD11 H N N 237 LEU HD12 H N N 238 LEU HD13 H N N 239 LEU HD21 H N N 240 LEU HD22 H N N 241 LEU HD23 H N N 242 LEU HXT H N N 243 LYS N N N N 244 LYS CA C N S 245 LYS C C N N 246 LYS O O N N 247 LYS CB C N N 248 LYS CG C N N 249 LYS CD C N N 250 LYS CE C N N 251 LYS NZ N N N 252 LYS OXT O N N 253 LYS H H N N 254 LYS H2 H N N 255 LYS HA H N N 256 LYS HB2 H N N 257 LYS HB3 H N N 258 LYS HG2 H N N 259 LYS HG3 H N N 260 LYS HD2 H N N 261 LYS HD3 H N N 262 LYS HE2 H N N 263 LYS HE3 H N N 264 LYS HZ1 H N N 265 LYS HZ2 H N N 266 LYS HZ3 H N N 267 LYS HXT H N N 268 MET N N N N 269 MET CA C N S 270 MET C C N N 271 MET O O N N 272 MET CB C N N 273 MET CG C N N 274 MET SD S N N 275 MET CE C N N 276 MET OXT O N N 277 MET H H N N 278 MET H2 H N N 279 MET HA H N N 280 MET HB2 H N N 281 MET HB3 H N N 282 MET HG2 H N N 283 MET HG3 H N N 284 MET HE1 H N N 285 MET HE2 H N N 286 MET HE3 H N N 287 MET HXT H N N 288 PHE N N N N 289 PHE CA C N S 290 PHE C C N N 291 PHE O O N N 292 PHE CB C N N 293 PHE CG C Y N 294 PHE CD1 C Y N 295 PHE CD2 C Y N 296 PHE CE1 C Y N 297 PHE CE2 C Y N 298 PHE CZ C Y N 299 PHE OXT O N N 300 PHE H H N N 301 PHE H2 H N N 302 PHE HA H N N 303 PHE HB2 H N N 304 PHE HB3 H N N 305 PHE HD1 H N N 306 PHE HD2 H N N 307 PHE HE1 H N N 308 PHE HE2 H N N 309 PHE HZ H N N 310 PHE HXT H N N 311 PRO N N N N 312 PRO CA C N S 313 PRO C C N N 314 PRO O O N N 315 PRO CB C N N 316 PRO CG C N N 317 PRO CD C N N 318 PRO OXT O N N 319 PRO H H N N 320 PRO HA H N N 321 PRO HB2 H N N 322 PRO HB3 H N N 323 PRO HG2 H N N 324 PRO HG3 H N N 325 PRO HD2 H N N 326 PRO HD3 H N N 327 PRO HXT H N N 328 SER N N N N 329 SER CA C N S 330 SER C C N N 331 SER O O N N 332 SER CB C N N 333 SER OG O N N 334 SER OXT O N N 335 SER H H N N 336 SER H2 H N N 337 SER HA H N N 338 SER HB2 H N N 339 SER HB3 H N N 340 SER HG H N N 341 SER HXT H N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ALY OH CH doub N N 13 ALY CH CH3 sing N N 14 ALY CH NZ sing N N 15 ALY CH3 HH31 sing N N 16 ALY CH3 HH32 sing N N 17 ALY CH3 HH33 sing N N 18 ALY NZ CE sing N N 19 ALY NZ HZ sing N N 20 ALY CE CD sing N N 21 ALY CE HE3 sing N N 22 ALY CE HE2 sing N N 23 ALY CD CG sing N N 24 ALY CD HD3 sing N N 25 ALY CD HD2 sing N N 26 ALY CG CB sing N N 27 ALY CG HG3 sing N N 28 ALY CG HG2 sing N N 29 ALY CB CA sing N N 30 ALY CB HB3 sing N N 31 ALY CB HB2 sing N N 32 ALY CA N sing N N 33 ALY CA C sing N N 34 ALY CA HA sing N N 35 ALY N H sing N N 36 ALY N H2 sing N N 37 ALY C O doub N N 38 ALY C OXT sing N N 39 ALY OXT HXT sing N N 40 ARG N CA sing N N 41 ARG N H sing N N 42 ARG N H2 sing N N 43 ARG CA C sing N N 44 ARG CA CB sing N N 45 ARG CA HA sing N N 46 ARG C O doub N N 47 ARG C OXT sing N N 48 ARG CB CG sing N N 49 ARG CB HB2 sing N N 50 ARG CB HB3 sing N N 51 ARG CG CD sing N N 52 ARG CG HG2 sing N N 53 ARG CG HG3 sing N N 54 ARG CD NE sing N N 55 ARG CD HD2 sing N N 56 ARG CD HD3 sing N N 57 ARG NE CZ sing N N 58 ARG NE HE sing N N 59 ARG CZ NH1 sing N N 60 ARG CZ NH2 doub N N 61 ARG NH1 HH11 sing N N 62 ARG NH1 HH12 sing N N 63 ARG NH2 HH21 sing N N 64 ARG NH2 HH22 sing N N 65 ARG OXT HXT sing N N 66 ASN N CA sing N N 67 ASN N H sing N N 68 ASN N H2 sing N N 69 ASN CA C sing N N 70 ASN CA CB sing N N 71 ASN CA HA sing N N 72 ASN C O doub N N 73 ASN C OXT sing N N 74 ASN CB CG sing N N 75 ASN CB HB2 sing N N 76 ASN CB HB3 sing N N 77 ASN CG OD1 doub N N 78 ASN CG ND2 sing N N 79 ASN ND2 HD21 sing N N 80 ASN ND2 HD22 sing N N 81 ASN OXT HXT sing N N 82 ASP N CA sing N N 83 ASP N H sing N N 84 ASP N H2 sing N N 85 ASP CA C sing N N 86 ASP CA CB sing N N 87 ASP CA HA sing N N 88 ASP C O doub N N 89 ASP C OXT sing N N 90 ASP CB CG sing N N 91 ASP CB HB2 sing N N 92 ASP CB HB3 sing N N 93 ASP CG OD1 doub N N 94 ASP CG OD2 sing N N 95 ASP OD2 HD2 sing N N 96 ASP OXT HXT sing N N 97 CYS N CA sing N N 98 CYS N H sing N N 99 CYS N H2 sing N N 100 CYS CA C sing N N 101 CYS CA CB sing N N 102 CYS CA HA sing N N 103 CYS C O doub N N 104 CYS C OXT sing N N 105 CYS CB SG sing N N 106 CYS CB HB2 sing N N 107 CYS CB HB3 sing N N 108 CYS SG HG sing N N 109 CYS OXT HXT sing N N 110 EDO C1 O1 sing N N 111 EDO C1 C2 sing N N 112 EDO C1 H11 sing N N 113 EDO C1 H12 sing N N 114 EDO O1 HO1 sing N N 115 EDO C2 O2 sing N N 116 EDO C2 H21 sing N N 117 EDO C2 H22 sing N N 118 EDO O2 HO2 sing N N 119 GLN N CA sing N N 120 GLN N H sing N N 121 GLN N H2 sing N N 122 GLN CA C sing N N 123 GLN CA CB sing N N 124 GLN CA HA sing N N 125 GLN C O doub N N 126 GLN C OXT sing N N 127 GLN CB CG sing N N 128 GLN CB HB2 sing N N 129 GLN CB HB3 sing N N 130 GLN CG CD sing N N 131 GLN CG HG2 sing N N 132 GLN CG HG3 sing N N 133 GLN CD OE1 doub N N 134 GLN CD NE2 sing N N 135 GLN NE2 HE21 sing N N 136 GLN NE2 HE22 sing N N 137 GLN OXT HXT sing N N 138 GLU N CA sing N N 139 GLU N H sing N N 140 GLU N H2 sing N N 141 GLU CA C sing N N 142 GLU CA CB sing N N 143 GLU CA HA sing N N 144 GLU C O doub N N 145 GLU C OXT sing N N 146 GLU CB CG sing N N 147 GLU CB HB2 sing N N 148 GLU CB HB3 sing N N 149 GLU CG CD sing N N 150 GLU CG HG2 sing N N 151 GLU CG HG3 sing N N 152 GLU CD OE1 doub N N 153 GLU CD OE2 sing N N 154 GLU OE2 HE2 sing N N 155 GLU OXT HXT sing N N 156 GLY N CA sing N N 157 GLY N H sing N N 158 GLY N H2 sing N N 159 GLY CA C sing N N 160 GLY CA HA2 sing N N 161 GLY CA HA3 sing N N 162 GLY C O doub N N 163 GLY C OXT sing N N 164 GLY OXT HXT sing N N 165 HIS N CA sing N N 166 HIS N H sing N N 167 HIS N H2 sing N N 168 HIS CA C sing N N 169 HIS CA CB sing N N 170 HIS CA HA sing N N 171 HIS C O doub N N 172 HIS C OXT sing N N 173 HIS CB CG sing N N 174 HIS CB HB2 sing N N 175 HIS CB HB3 sing N N 176 HIS CG ND1 sing Y N 177 HIS CG CD2 doub Y N 178 HIS ND1 CE1 doub Y N 179 HIS ND1 HD1 sing N N 180 HIS CD2 NE2 sing Y N 181 HIS CD2 HD2 sing N N 182 HIS CE1 NE2 sing Y N 183 HIS CE1 HE1 sing N N 184 HIS NE2 HE2 sing N N 185 HIS OXT HXT sing N N 186 HOH O H1 sing N N 187 HOH O H2 sing N N 188 ILE N CA sing N N 189 ILE N H sing N N 190 ILE N H2 sing N N 191 ILE CA C sing N N 192 ILE CA CB sing N N 193 ILE CA HA sing N N 194 ILE C O doub N N 195 ILE C OXT sing N N 196 ILE CB CG1 sing N N 197 ILE CB CG2 sing N N 198 ILE CB HB sing N N 199 ILE CG1 CD1 sing N N 200 ILE CG1 HG12 sing N N 201 ILE CG1 HG13 sing N N 202 ILE CG2 HG21 sing N N 203 ILE CG2 HG22 sing N N 204 ILE CG2 HG23 sing N N 205 ILE CD1 HD11 sing N N 206 ILE CD1 HD12 sing N N 207 ILE CD1 HD13 sing N N 208 ILE OXT HXT sing N N 209 LEU N CA sing N N 210 LEU N H sing N N 211 LEU N H2 sing N N 212 LEU CA C sing N N 213 LEU CA CB sing N N 214 LEU CA HA sing N N 215 LEU C O doub N N 216 LEU C OXT sing N N 217 LEU CB CG sing N N 218 LEU CB HB2 sing N N 219 LEU CB HB3 sing N N 220 LEU CG CD1 sing N N 221 LEU CG CD2 sing N N 222 LEU CG HG sing N N 223 LEU CD1 HD11 sing N N 224 LEU CD1 HD12 sing N N 225 LEU CD1 HD13 sing N N 226 LEU CD2 HD21 sing N N 227 LEU CD2 HD22 sing N N 228 LEU CD2 HD23 sing N N 229 LEU OXT HXT sing N N 230 LYS N CA sing N N 231 LYS N H sing N N 232 LYS N H2 sing N N 233 LYS CA C sing N N 234 LYS CA CB sing N N 235 LYS CA HA sing N N 236 LYS C O doub N N 237 LYS C OXT sing N N 238 LYS CB CG sing N N 239 LYS CB HB2 sing N N 240 LYS CB HB3 sing N N 241 LYS CG CD sing N N 242 LYS CG HG2 sing N N 243 LYS CG HG3 sing N N 244 LYS CD CE sing N N 245 LYS CD HD2 sing N N 246 LYS CD HD3 sing N N 247 LYS CE NZ sing N N 248 LYS CE HE2 sing N N 249 LYS CE HE3 sing N N 250 LYS NZ HZ1 sing N N 251 LYS NZ HZ2 sing N N 252 LYS NZ HZ3 sing N N 253 LYS OXT HXT sing N N 254 MET N CA sing N N 255 MET N H sing N N 256 MET N H2 sing N N 257 MET CA C sing N N 258 MET CA CB sing N N 259 MET CA HA sing N N 260 MET C O doub N N 261 MET C OXT sing N N 262 MET CB CG sing N N 263 MET CB HB2 sing N N 264 MET CB HB3 sing N N 265 MET CG SD sing N N 266 MET CG HG2 sing N N 267 MET CG HG3 sing N N 268 MET SD CE sing N N 269 MET CE HE1 sing N N 270 MET CE HE2 sing N N 271 MET CE HE3 sing N N 272 MET OXT HXT sing N N 273 PHE N CA sing N N 274 PHE N H sing N N 275 PHE N H2 sing N N 276 PHE CA C sing N N 277 PHE CA CB sing N N 278 PHE CA HA sing N N 279 PHE C O doub N N 280 PHE C OXT sing N N 281 PHE CB CG sing N N 282 PHE CB HB2 sing N N 283 PHE CB HB3 sing N N 284 PHE CG CD1 doub Y N 285 PHE CG CD2 sing Y N 286 PHE CD1 CE1 sing Y N 287 PHE CD1 HD1 sing N N 288 PHE CD2 CE2 doub Y N 289 PHE CD2 HD2 sing N N 290 PHE CE1 CZ doub Y N 291 PHE CE1 HE1 sing N N 292 PHE CE2 CZ sing Y N 293 PHE CE2 HE2 sing N N 294 PHE CZ HZ sing N N 295 PHE OXT HXT sing N N 296 PRO N CA sing N N 297 PRO N CD sing N N 298 PRO N H sing N N 299 PRO CA C sing N N 300 PRO CA CB sing N N 301 PRO CA HA sing N N 302 PRO C O doub N N 303 PRO C OXT sing N N 304 PRO CB CG sing N N 305 PRO CB HB2 sing N N 306 PRO CB HB3 sing N N 307 PRO CG CD sing N N 308 PRO CG HG2 sing N N 309 PRO CG HG3 sing N N 310 PRO CD HD2 sing N N 311 PRO CD HD3 sing N N 312 PRO OXT HXT sing N N 313 SER N CA sing N N 314 SER N H sing N N 315 SER N H2 sing N N 316 SER CA C sing N N 317 SER CA CB sing N N 318 SER CA HA sing N N 319 SER C O doub N N 320 SER C OXT sing N N 321 SER CB OG sing N N 322 SER CB HB2 sing N N 323 SER CB HB3 sing N N 324 SER OG HG sing N N 325 SER OXT HXT sing N N 326 THR N CA sing N N 327 THR N H sing N N 328 THR N H2 sing N N 329 THR CA C sing N N 330 THR CA CB sing N N 331 THR CA HA sing N N 332 THR C O doub N N 333 THR C OXT sing N N 334 THR CB OG1 sing N N 335 THR CB CG2 sing N N 336 THR CB HB sing N N 337 THR OG1 HG1 sing N N 338 THR CG2 HG21 sing N N 339 THR CG2 HG22 sing N N 340 THR CG2 HG23 sing N N 341 THR OXT HXT sing N N 342 TRP N CA sing N N 343 TRP N H sing N N 344 TRP N H2 sing N N 345 TRP CA C sing N N 346 TRP CA CB sing N N 347 TRP CA HA sing N N 348 TRP C O doub N N 349 TRP C OXT sing N N 350 TRP CB CG sing N N 351 TRP CB HB2 sing N N 352 TRP CB HB3 sing N N 353 TRP CG CD1 doub Y N 354 TRP CG CD2 sing Y N 355 TRP CD1 NE1 sing Y N 356 TRP CD1 HD1 sing N N 357 TRP CD2 CE2 doub Y N 358 TRP CD2 CE3 sing Y N 359 TRP NE1 CE2 sing Y N 360 TRP NE1 HE1 sing N N 361 TRP CE2 CZ2 sing Y N 362 TRP CE3 CZ3 doub Y N 363 TRP CE3 HE3 sing N N 364 TRP CZ2 CH2 doub Y N 365 TRP CZ2 HZ2 sing N N 366 TRP CZ3 CH2 sing Y N 367 TRP CZ3 HZ3 sing N N 368 TRP CH2 HH2 sing N N 369 TRP OXT HXT sing N N 370 TYR N CA sing N N 371 TYR N H sing N N 372 TYR N H2 sing N N 373 TYR CA C sing N N 374 TYR CA CB sing N N 375 TYR CA HA sing N N 376 TYR C O doub N N 377 TYR C OXT sing N N 378 TYR CB CG sing N N 379 TYR CB HB2 sing N N 380 TYR CB HB3 sing N N 381 TYR CG CD1 doub Y N 382 TYR CG CD2 sing Y N 383 TYR CD1 CE1 sing Y N 384 TYR CD1 HD1 sing N N 385 TYR CD2 CE2 doub Y N 386 TYR CD2 HD2 sing N N 387 TYR CE1 CZ doub Y N 388 TYR CE1 HE1 sing N N 389 TYR CE2 CZ sing Y N 390 TYR CE2 HE2 sing N N 391 TYR CZ OH sing N N 392 TYR OH HH sing N N 393 TYR OXT HXT sing N N 394 VAL N CA sing N N 395 VAL N H sing N N 396 VAL N H2 sing N N 397 VAL CA C sing N N 398 VAL CA CB sing N N 399 VAL CA HA sing N N 400 VAL C O doub N N 401 VAL C OXT sing N N 402 VAL CB CG1 sing N N 403 VAL CB CG2 sing N N 404 VAL CB HB sing N N 405 VAL CG1 HG11 sing N N 406 VAL CG1 HG12 sing N N 407 VAL CG1 HG13 sing N N 408 VAL CG2 HG21 sing N N 409 VAL CG2 HG22 sing N N 410 VAL CG2 HG23 sing N N 411 VAL OXT HXT sing N N 412 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'N(6)-ACETYLLYSINE' ALY 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3G0L _pdbx_initial_refinement_model.details 'pdb entry 3G0L' #