data_4NVP # _entry.id 4NVP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NVP pdb_00004nvp 10.2210/pdb4nvp/pdb RCSB RCSB083714 ? ? WWPDB D_1000083714 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-19 2 'Structure model' 1 1 2014-05-28 3 'Structure model' 1 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NVP _pdbx_database_status.recvd_initial_deposition_date 2013-12-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3U11 . unspecified PDB 3OTF . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alfieri, A.' 1 'Moroni, A.' 2 # _citation.id primary _citation.title 'Cyclic Nucleotide Mapping of Hyperpolarization-Activated Cyclic Nucleotide-Gated (HCN) Channels.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 9 _citation.page_first 1128 _citation.page_last 1137 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24605759 _citation.pdbx_database_id_DOI 10.1021/cb400904s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moller, S.' 1 ? primary 'Alfieri, A.' 2 ? primary 'Bertinetti, D.' 3 ? primary 'Aquila, M.' 4 ? primary 'Schwede, F.' 5 ? primary 'Lolicato, M.' 6 ? primary 'Rehmann, H.' 7 ? primary 'Moroni, A.' 8 ? primary 'Herberg, F.W.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4' 24498.004 1 ? ? ? ? 2 non-polymer syn '(2S,4aR,6R,7R,7aS)-6-(4-amino-7H-pyrrolo[2,3-d]pyrimidin-7-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-oxide' 328.218 1 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPSSPMDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEIINFN(CSO)RKLV ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRT ASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLH ; _entity_poly.pdbx_seq_one_letter_code_can ;GPSSPMDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEIINFNCRKLVASMP LFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVR ADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2S,4aR,6R,7R,7aS)-6-(4-amino-7H-pyrrolo[2,3-d]pyrimidin-7-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-oxide' 7CH 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 SER n 1 4 SER n 1 5 PRO n 1 6 MET n 1 7 ASP n 1 8 SER n 1 9 SER n 1 10 ARG n 1 11 ARG n 1 12 GLN n 1 13 TYR n 1 14 GLN n 1 15 GLU n 1 16 LYS n 1 17 TYR n 1 18 LYS n 1 19 GLN n 1 20 VAL n 1 21 GLU n 1 22 GLN n 1 23 TYR n 1 24 MET n 1 25 SER n 1 26 PHE n 1 27 HIS n 1 28 LYS n 1 29 LEU n 1 30 PRO n 1 31 PRO n 1 32 ASP n 1 33 THR n 1 34 ARG n 1 35 GLN n 1 36 ARG n 1 37 ILE n 1 38 HIS n 1 39 ASP n 1 40 TYR n 1 41 TYR n 1 42 GLU n 1 43 HIS n 1 44 ARG n 1 45 TYR n 1 46 GLN n 1 47 GLY n 1 48 LYS n 1 49 MET n 1 50 PHE n 1 51 ASP n 1 52 GLU n 1 53 GLU n 1 54 SER n 1 55 ILE n 1 56 LEU n 1 57 GLY n 1 58 GLU n 1 59 LEU n 1 60 SER n 1 61 GLU n 1 62 PRO n 1 63 LEU n 1 64 ARG n 1 65 GLU n 1 66 GLU n 1 67 ILE n 1 68 ILE n 1 69 ASN n 1 70 PHE n 1 71 ASN n 1 72 CSO n 1 73 ARG n 1 74 LYS n 1 75 LEU n 1 76 VAL n 1 77 ALA n 1 78 SER n 1 79 MET n 1 80 PRO n 1 81 LEU n 1 82 PHE n 1 83 ALA n 1 84 ASN n 1 85 ALA n 1 86 ASP n 1 87 PRO n 1 88 ASN n 1 89 PHE n 1 90 VAL n 1 91 THR n 1 92 SER n 1 93 MET n 1 94 LEU n 1 95 THR n 1 96 LYS n 1 97 LEU n 1 98 ARG n 1 99 PHE n 1 100 GLU n 1 101 VAL n 1 102 PHE n 1 103 GLN n 1 104 PRO n 1 105 GLY n 1 106 ASP n 1 107 TYR n 1 108 ILE n 1 109 ILE n 1 110 ARG n 1 111 GLU n 1 112 GLY n 1 113 THR n 1 114 ILE n 1 115 GLY n 1 116 LYS n 1 117 LYS n 1 118 MET n 1 119 TYR n 1 120 PHE n 1 121 ILE n 1 122 GLN n 1 123 HIS n 1 124 GLY n 1 125 VAL n 1 126 VAL n 1 127 SER n 1 128 VAL n 1 129 LEU n 1 130 THR n 1 131 LYS n 1 132 GLY n 1 133 ASN n 1 134 LYS n 1 135 GLU n 1 136 THR n 1 137 LYS n 1 138 LEU n 1 139 ALA n 1 140 ASP n 1 141 GLY n 1 142 SER n 1 143 TYR n 1 144 PHE n 1 145 GLY n 1 146 GLU n 1 147 ILE n 1 148 CYS n 1 149 LEU n 1 150 LEU n 1 151 THR n 1 152 ARG n 1 153 GLY n 1 154 ARG n 1 155 ARG n 1 156 THR n 1 157 ALA n 1 158 SER n 1 159 VAL n 1 160 ARG n 1 161 ALA n 1 162 ASP n 1 163 THR n 1 164 TYR n 1 165 CYS n 1 166 ARG n 1 167 LEU n 1 168 TYR n 1 169 SER n 1 170 LEU n 1 171 SER n 1 172 VAL n 1 173 ASP n 1 174 ASN n 1 175 PHE n 1 176 ASN n 1 177 GLU n 1 178 VAL n 1 179 LEU n 1 180 GLU n 1 181 GLU n 1 182 TYR n 1 183 PRO n 1 184 MET n 1 185 MET n 1 186 ARG n 1 187 ARG n 1 188 ALA n 1 189 PHE n 1 190 GLU n 1 191 THR n 1 192 VAL n 1 193 ALA n 1 194 LEU n 1 195 ASP n 1 196 ARG n 1 197 LEU n 1 198 ASP n 1 199 ARG n 1 200 ILE n 1 201 GLY n 1 202 LYS n 1 203 LYS n 1 204 ASN n 1 205 SER n 1 206 ILE n 1 207 LEU n 1 208 LEU n 1 209 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene HCN4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 7CH non-polymer . '(2S,4aR,6R,7R,7aS)-6-(4-amino-7H-pyrrolo[2,3-d]pyrimidin-7-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-oxide' 7-CH-cAMP 'C11 H13 N4 O6 P' 328.218 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 515 ? ? ? A . n A 1 2 PRO 2 516 ? ? ? A . n A 1 3 SER 3 517 ? ? ? A . n A 1 4 SER 4 518 518 SER SER A . n A 1 5 PRO 5 519 519 PRO PRO A . n A 1 6 MET 6 520 520 MET MET A . n A 1 7 ASP 7 521 521 ASP ASP A . n A 1 8 SER 8 522 522 SER SER A . n A 1 9 SER 9 523 523 SER SER A . n A 1 10 ARG 10 524 524 ARG ARG A . n A 1 11 ARG 11 525 525 ARG ARG A . n A 1 12 GLN 12 526 526 GLN GLN A . n A 1 13 TYR 13 527 527 TYR TYR A . n A 1 14 GLN 14 528 528 GLN GLN A . n A 1 15 GLU 15 529 529 GLU GLU A . n A 1 16 LYS 16 530 530 LYS LYS A . n A 1 17 TYR 17 531 531 TYR TYR A . n A 1 18 LYS 18 532 532 LYS LYS A . n A 1 19 GLN 19 533 533 GLN GLN A . n A 1 20 VAL 20 534 534 VAL VAL A . n A 1 21 GLU 21 535 535 GLU GLU A . n A 1 22 GLN 22 536 536 GLN GLN A . n A 1 23 TYR 23 537 537 TYR TYR A . n A 1 24 MET 24 538 538 MET MET A . n A 1 25 SER 25 539 539 SER SER A . n A 1 26 PHE 26 540 540 PHE PHE A . n A 1 27 HIS 27 541 541 HIS HIS A . n A 1 28 LYS 28 542 542 LYS LYS A . n A 1 29 LEU 29 543 543 LEU LEU A . n A 1 30 PRO 30 544 544 PRO PRO A . n A 1 31 PRO 31 545 545 PRO PRO A . n A 1 32 ASP 32 546 546 ASP ASP A . n A 1 33 THR 33 547 547 THR THR A . n A 1 34 ARG 34 548 548 ARG ARG A . n A 1 35 GLN 35 549 549 GLN GLN A . n A 1 36 ARG 36 550 550 ARG ARG A . n A 1 37 ILE 37 551 551 ILE ILE A . n A 1 38 HIS 38 552 552 HIS HIS A . n A 1 39 ASP 39 553 553 ASP ASP A . n A 1 40 TYR 40 554 554 TYR TYR A . n A 1 41 TYR 41 555 555 TYR TYR A . n A 1 42 GLU 42 556 556 GLU GLU A . n A 1 43 HIS 43 557 557 HIS HIS A . n A 1 44 ARG 44 558 558 ARG ARG A . n A 1 45 TYR 45 559 559 TYR TYR A . n A 1 46 GLN 46 560 560 GLN GLN A . n A 1 47 GLY 47 561 561 GLY GLY A . n A 1 48 LYS 48 562 562 LYS LYS A . n A 1 49 MET 49 563 563 MET MET A . n A 1 50 PHE 50 564 564 PHE PHE A . n A 1 51 ASP 51 565 565 ASP ASP A . n A 1 52 GLU 52 566 566 GLU GLU A . n A 1 53 GLU 53 567 567 GLU GLU A . n A 1 54 SER 54 568 568 SER SER A . n A 1 55 ILE 55 569 569 ILE ILE A . n A 1 56 LEU 56 570 570 LEU LEU A . n A 1 57 GLY 57 571 571 GLY GLY A . n A 1 58 GLU 58 572 572 GLU GLU A . n A 1 59 LEU 59 573 573 LEU LEU A . n A 1 60 SER 60 574 574 SER SER A . n A 1 61 GLU 61 575 575 GLU GLU A . n A 1 62 PRO 62 576 576 PRO PRO A . n A 1 63 LEU 63 577 577 LEU LEU A . n A 1 64 ARG 64 578 578 ARG ARG A . n A 1 65 GLU 65 579 579 GLU GLU A . n A 1 66 GLU 66 580 580 GLU GLU A . n A 1 67 ILE 67 581 581 ILE ILE A . n A 1 68 ILE 68 582 582 ILE ILE A . n A 1 69 ASN 69 583 583 ASN ASN A . n A 1 70 PHE 70 584 584 PHE PHE A . n A 1 71 ASN 71 585 585 ASN ASN A . n A 1 72 CSO 72 586 586 CSO CSO A . n A 1 73 ARG 73 587 587 ARG ARG A . n A 1 74 LYS 74 588 588 LYS LYS A . n A 1 75 LEU 75 589 589 LEU LEU A . n A 1 76 VAL 76 590 590 VAL VAL A . n A 1 77 ALA 77 591 591 ALA ALA A . n A 1 78 SER 78 592 592 SER SER A . n A 1 79 MET 79 593 593 MET MET A . n A 1 80 PRO 80 594 594 PRO PRO A . n A 1 81 LEU 81 595 595 LEU LEU A . n A 1 82 PHE 82 596 596 PHE PHE A . n A 1 83 ALA 83 597 597 ALA ALA A . n A 1 84 ASN 84 598 598 ASN ASN A . n A 1 85 ALA 85 599 599 ALA ALA A . n A 1 86 ASP 86 600 600 ASP ASP A . n A 1 87 PRO 87 601 601 PRO PRO A . n A 1 88 ASN 88 602 602 ASN ASN A . n A 1 89 PHE 89 603 603 PHE PHE A . n A 1 90 VAL 90 604 604 VAL VAL A . n A 1 91 THR 91 605 605 THR THR A . n A 1 92 SER 92 606 606 SER SER A . n A 1 93 MET 93 607 607 MET MET A . n A 1 94 LEU 94 608 608 LEU LEU A . n A 1 95 THR 95 609 609 THR THR A . n A 1 96 LYS 96 610 610 LYS LYS A . n A 1 97 LEU 97 611 611 LEU LEU A . n A 1 98 ARG 98 612 612 ARG ARG A . n A 1 99 PHE 99 613 613 PHE PHE A . n A 1 100 GLU 100 614 614 GLU GLU A . n A 1 101 VAL 101 615 615 VAL VAL A . n A 1 102 PHE 102 616 616 PHE PHE A . n A 1 103 GLN 103 617 617 GLN GLN A . n A 1 104 PRO 104 618 618 PRO PRO A . n A 1 105 GLY 105 619 619 GLY GLY A . n A 1 106 ASP 106 620 620 ASP ASP A . n A 1 107 TYR 107 621 621 TYR TYR A . n A 1 108 ILE 108 622 622 ILE ILE A . n A 1 109 ILE 109 623 623 ILE ILE A . n A 1 110 ARG 110 624 624 ARG ARG A . n A 1 111 GLU 111 625 625 GLU GLU A . n A 1 112 GLY 112 626 626 GLY GLY A . n A 1 113 THR 113 627 627 THR THR A . n A 1 114 ILE 114 628 628 ILE ILE A . n A 1 115 GLY 115 629 629 GLY GLY A . n A 1 116 LYS 116 630 630 LYS LYS A . n A 1 117 LYS 117 631 631 LYS LYS A . n A 1 118 MET 118 632 632 MET MET A . n A 1 119 TYR 119 633 633 TYR TYR A . n A 1 120 PHE 120 634 634 PHE PHE A . n A 1 121 ILE 121 635 635 ILE ILE A . n A 1 122 GLN 122 636 636 GLN GLN A . n A 1 123 HIS 123 637 637 HIS HIS A . n A 1 124 GLY 124 638 638 GLY GLY A . n A 1 125 VAL 125 639 639 VAL VAL A . n A 1 126 VAL 126 640 640 VAL VAL A . n A 1 127 SER 127 641 641 SER SER A . n A 1 128 VAL 128 642 642 VAL VAL A . n A 1 129 LEU 129 643 643 LEU LEU A . n A 1 130 THR 130 644 644 THR THR A . n A 1 131 LYS 131 645 645 LYS LYS A . n A 1 132 GLY 132 646 646 GLY GLY A . n A 1 133 ASN 133 647 647 ASN ASN A . n A 1 134 LYS 134 648 648 LYS LYS A . n A 1 135 GLU 135 649 649 GLU GLU A . n A 1 136 THR 136 650 650 THR THR A . n A 1 137 LYS 137 651 651 LYS LYS A . n A 1 138 LEU 138 652 652 LEU LEU A . n A 1 139 ALA 139 653 653 ALA ALA A . n A 1 140 ASP 140 654 654 ASP ASP A . n A 1 141 GLY 141 655 655 GLY GLY A . n A 1 142 SER 142 656 656 SER SER A . n A 1 143 TYR 143 657 657 TYR TYR A . n A 1 144 PHE 144 658 658 PHE PHE A . n A 1 145 GLY 145 659 659 GLY GLY A . n A 1 146 GLU 146 660 660 GLU GLU A . n A 1 147 ILE 147 661 661 ILE ILE A . n A 1 148 CYS 148 662 662 CYS CYS A . n A 1 149 LEU 149 663 663 LEU LEU A . n A 1 150 LEU 150 664 664 LEU LEU A . n A 1 151 THR 151 665 665 THR THR A . n A 1 152 ARG 152 666 666 ARG ARG A . n A 1 153 GLY 153 667 667 GLY GLY A . n A 1 154 ARG 154 668 668 ARG ARG A . n A 1 155 ARG 155 669 669 ARG ARG A . n A 1 156 THR 156 670 670 THR THR A . n A 1 157 ALA 157 671 671 ALA ALA A . n A 1 158 SER 158 672 672 SER SER A . n A 1 159 VAL 159 673 673 VAL VAL A . n A 1 160 ARG 160 674 674 ARG ARG A . n A 1 161 ALA 161 675 675 ALA ALA A . n A 1 162 ASP 162 676 676 ASP ASP A . n A 1 163 THR 163 677 677 THR THR A . n A 1 164 TYR 164 678 678 TYR TYR A . n A 1 165 CYS 165 679 679 CYS CYS A . n A 1 166 ARG 166 680 680 ARG ARG A . n A 1 167 LEU 167 681 681 LEU LEU A . n A 1 168 TYR 168 682 682 TYR TYR A . n A 1 169 SER 169 683 683 SER SER A . n A 1 170 LEU 170 684 684 LEU LEU A . n A 1 171 SER 171 685 685 SER SER A . n A 1 172 VAL 172 686 686 VAL VAL A . n A 1 173 ASP 173 687 687 ASP ASP A . n A 1 174 ASN 174 688 688 ASN ASN A . n A 1 175 PHE 175 689 689 PHE PHE A . n A 1 176 ASN 176 690 690 ASN ASN A . n A 1 177 GLU 177 691 691 GLU GLU A . n A 1 178 VAL 178 692 692 VAL VAL A . n A 1 179 LEU 179 693 693 LEU LEU A . n A 1 180 GLU 180 694 694 GLU GLU A . n A 1 181 GLU 181 695 695 GLU GLU A . n A 1 182 TYR 182 696 696 TYR TYR A . n A 1 183 PRO 183 697 697 PRO PRO A . n A 1 184 MET 184 698 698 MET MET A . n A 1 185 MET 185 699 699 MET MET A . n A 1 186 ARG 186 700 700 ARG ARG A . n A 1 187 ARG 187 701 701 ARG ARG A . n A 1 188 ALA 188 702 702 ALA ALA A . n A 1 189 PHE 189 703 703 PHE PHE A . n A 1 190 GLU 190 704 704 GLU GLU A . n A 1 191 THR 191 705 705 THR THR A . n A 1 192 VAL 192 706 706 VAL VAL A . n A 1 193 ALA 193 707 707 ALA ALA A . n A 1 194 LEU 194 708 708 LEU LEU A . n A 1 195 ASP 195 709 709 ASP ASP A . n A 1 196 ARG 196 710 710 ARG ARG A . n A 1 197 LEU 197 711 711 LEU LEU A . n A 1 198 ASP 198 712 712 ASP ASP A . n A 1 199 ARG 199 713 713 ARG ARG A . n A 1 200 ILE 200 714 714 ILE ILE A . n A 1 201 GLY 201 715 715 GLY GLY A . n A 1 202 LYS 202 716 716 LYS LYS A . n A 1 203 LYS 203 717 717 LYS LYS A . n A 1 204 ASN 204 718 718 ASN ASN A . n A 1 205 SER 205 719 ? ? ? A . n A 1 206 ILE 206 720 ? ? ? A . n A 1 207 LEU 207 721 ? ? ? A . n A 1 208 LEU 208 722 ? ? ? A . n A 1 209 HIS 209 723 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7CH 1 800 800 7CH 7CH A . C 3 HOH 1 901 1 HOH HOH A . C 3 HOH 2 902 2 HOH HOH A . C 3 HOH 3 903 3 HOH HOH A . C 3 HOH 4 904 4 HOH HOH A . C 3 HOH 5 905 5 HOH HOH A . C 3 HOH 6 906 6 HOH HOH A . C 3 HOH 7 907 7 HOH HOH A . C 3 HOH 8 908 8 HOH HOH A . C 3 HOH 9 909 9 HOH HOH A . C 3 HOH 10 910 10 HOH HOH A . C 3 HOH 11 911 11 HOH HOH A . C 3 HOH 12 912 12 HOH HOH A . C 3 HOH 13 913 13 HOH HOH A . C 3 HOH 14 914 14 HOH HOH A . C 3 HOH 15 915 15 HOH HOH A . C 3 HOH 16 916 16 HOH HOH A . C 3 HOH 17 917 17 HOH HOH A . C 3 HOH 18 918 18 HOH HOH A . C 3 HOH 19 919 19 HOH HOH A . C 3 HOH 20 920 20 HOH HOH A . C 3 HOH 21 921 21 HOH HOH A . C 3 HOH 22 922 22 HOH HOH A . C 3 HOH 23 923 23 HOH HOH A . C 3 HOH 24 924 24 HOH HOH A . C 3 HOH 25 925 25 HOH HOH A . C 3 HOH 26 926 26 HOH HOH A . C 3 HOH 27 927 27 HOH HOH A . C 3 HOH 28 928 28 HOH HOH A . C 3 HOH 29 929 29 HOH HOH A . C 3 HOH 30 930 30 HOH HOH A . C 3 HOH 31 931 31 HOH HOH A . C 3 HOH 32 932 32 HOH HOH A . C 3 HOH 33 933 33 HOH HOH A . C 3 HOH 34 934 34 HOH HOH A . C 3 HOH 35 935 35 HOH HOH A . C 3 HOH 36 936 36 HOH HOH A . C 3 HOH 37 937 37 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4NVP _cell.length_a 96.010 _cell.length_b 96.010 _cell.length_c 50.170 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NVP _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4NVP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;HCN4 521-723 (10 mg mL-1) and 7-CH-cAMP 0.5mM were mixed in a 2:1 ratio with 100 mM TrisCl pH 8.0, 20 % PEG4000 (w/v), VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-10-24 _diffrn_detector.details 'bending magnet; bent collimating mirror and toroid' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97372 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97372 # _reflns.entry_id 4NVP _reflns.observed_criterion_sigma_I 5.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.17 _reflns.d_resolution_high 2.5 _reflns.number_obs 8568 _reflns.number_all 8568 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.4 _reflns.B_iso_Wilson_estimate 33.2 _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1215 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NVP _refine.ls_number_reflns_obs 8141 _refine.ls_number_reflns_all 8148 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.47 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.92 _refine.ls_R_factor_obs 0.20117 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19799 _refine.ls_R_factor_R_free 0.27031 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 406 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 42.441 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] -0.05 _refine.aniso_B[3][3] 0.10 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3U11_A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.604 _refine.pdbx_overall_ESU_R_Free 0.317 _refine.overall_SU_ML 0.221 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.961 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1661 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1720 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 44.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.011 0.019 ? 1738 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 1635 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.504 1.981 ? 2343 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.780 3.000 ? 3762 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.320 5.000 ? 204 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.176 22.857 ? 91 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 19.842 15.000 ? 318 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13.757 15.000 ? 18 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.082 0.200 ? 244 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1942 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 431 ? 'X-RAY DIFFRACTION' r_mcbond_it 2.807 3.983 ? 807 ? 'X-RAY DIFFRACTION' r_mcbond_other 2.786 3.979 ? 806 ? 'X-RAY DIFFRACTION' r_mcangle_it 4.420 5.962 ? 1008 ? 'X-RAY DIFFRACTION' r_mcangle_other 4.421 5.969 ? 1009 ? 'X-RAY DIFFRACTION' r_scbond_it 3.600 4.376 ? 931 ? 'X-RAY DIFFRACTION' r_scbond_other 3.598 4.375 ? 932 ? 'X-RAY DIFFRACTION' r_scangle_other 5.814 6.349 ? 1334 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 8.003 30.804 ? 1929 ? 'X-RAY DIFFRACTION' r_long_range_B_other 8.001 30.804 ? 1930 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 570 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 99.67 _refine_ls_shell.R_factor_R_free 0.425 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4NVP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4NVP _struct.title 'Structure of the cyclic nucleotide-binding domain of HCN4 channel complexed with 7-CH-cAMP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NVP _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;cyclic nucleotide binding domain, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel, cytoplasmic domain, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HCN4_HUMAN _struct_ref.pdbx_db_accession Q9Y3Q4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEIINFNCRKLVASMPLFANAD PNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCR LYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLH ; _struct_ref.pdbx_align_begin 521 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NVP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y3Q4 _struct_ref_seq.db_align_beg 521 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 723 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 521 _struct_ref_seq.pdbx_auth_seq_align_end 723 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NVP GLY A 1 ? UNP Q9Y3Q4 ? ? 'expression tag' 515 1 1 4NVP PRO A 2 ? UNP Q9Y3Q4 ? ? 'expression tag' 516 2 1 4NVP SER A 3 ? UNP Q9Y3Q4 ? ? 'expression tag' 517 3 1 4NVP SER A 4 ? UNP Q9Y3Q4 ? ? 'expression tag' 518 4 1 4NVP PRO A 5 ? UNP Q9Y3Q4 ? ? 'expression tag' 519 5 1 4NVP MET A 6 ? UNP Q9Y3Q4 ? ? 'expression tag' 520 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8990 ? 1 MORE -35 ? 1 'SSA (A^2)' 39160 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 96.0100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0.0000000000 -1.0000000000 0.0000000000 48.0050000000 1.0000000000 0.0000000000 0.0000000000 48.0050000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0.0000000000 1.0000000000 0.0000000000 -48.0050000000 -1.0000000000 0.0000000000 0.0000000000 48.0050000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 7 ? HIS A 27 ? ASP A 521 HIS A 541 1 ? 21 HELX_P HELX_P2 2 PRO A 30 ? GLN A 46 ? PRO A 544 GLN A 560 1 ? 17 HELX_P HELX_P3 3 ASP A 51 ? LEU A 59 ? ASP A 565 LEU A 573 1 ? 9 HELX_P HELX_P4 4 SER A 60 ? CSO A 72 ? SER A 574 CSO A 586 1 ? 13 HELX_P HELX_P5 5 CSO A 72 ? MET A 79 ? CSO A 586 MET A 593 1 ? 8 HELX_P HELX_P6 6 MET A 79 ? ASN A 84 ? MET A 593 ASN A 598 1 ? 6 HELX_P HELX_P7 7 ASP A 86 ? THR A 95 ? ASP A 600 THR A 609 1 ? 10 HELX_P HELX_P8 8 GLU A 146 ? ARG A 152 ? GLU A 660 ARG A 666 1 ? 7 HELX_P HELX_P9 9 VAL A 172 ? TYR A 182 ? VAL A 686 TYR A 696 1 ? 11 HELX_P HELX_P10 10 TYR A 182 ? ILE A 200 ? TYR A 696 ILE A 714 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 71 C ? ? ? 1_555 A CSO 72 N ? ? A ASN 585 A CSO 586 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale2 covale both ? A CSO 72 C ? ? ? 1_555 A ARG 73 N ? ? A CSO 586 A ARG 587 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 98 ? PHE A 102 ? ARG A 612 PHE A 616 A 2 CYS A 165 ? SER A 171 ? CYS A 679 SER A 685 A 3 LYS A 117 ? HIS A 123 ? LYS A 631 HIS A 637 A 4 TYR A 143 ? PHE A 144 ? TYR A 657 PHE A 658 B 1 TYR A 107 ? ILE A 109 ? TYR A 621 ILE A 623 B 2 SER A 158 ? ALA A 161 ? SER A 672 ALA A 675 B 3 VAL A 125 ? LEU A 129 ? VAL A 639 LEU A 643 B 4 GLU A 135 ? ALA A 139 ? GLU A 649 ALA A 653 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 100 ? N GLU A 614 O LEU A 167 ? O LEU A 681 A 2 3 O ARG A 166 ? O ARG A 680 N HIS A 123 ? N HIS A 637 A 3 4 N TYR A 119 ? N TYR A 633 O PHE A 144 ? O PHE A 658 B 1 2 N ILE A 109 ? N ILE A 623 O VAL A 159 ? O VAL A 673 B 2 3 O ARG A 160 ? O ARG A 674 N SER A 127 ? N SER A 641 B 3 4 N VAL A 126 ? N VAL A 640 O LEU A 138 ? O LEU A 652 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 7CH _struct_site.pdbx_auth_seq_id 800 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE 7CH A 800' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PHE A 144 ? PHE A 658 . ? 1_555 ? 2 AC1 10 GLY A 145 ? GLY A 659 . ? 1_555 ? 3 AC1 10 GLU A 146 ? GLU A 660 . ? 1_555 ? 4 AC1 10 ILE A 147 ? ILE A 661 . ? 1_555 ? 5 AC1 10 CYS A 148 ? CYS A 662 . ? 1_555 ? 6 AC1 10 ARG A 155 ? ARG A 669 . ? 1_555 ? 7 AC1 10 THR A 156 ? THR A 670 . ? 1_555 ? 8 AC1 10 ALA A 157 ? ALA A 671 . ? 1_555 ? 9 AC1 10 ARG A 196 ? ARG A 710 . ? 1_555 ? 10 AC1 10 ILE A 200 ? ILE A 714 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 654 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -33.88 _pdbx_validate_torsion.psi 126.20 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSO _pdbx_struct_mod_residue.label_seq_id 72 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSO _pdbx_struct_mod_residue.auth_seq_id 586 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details S-HYDROXYCYSTEINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 934 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 515 ? A GLY 1 2 1 Y 1 A PRO 516 ? A PRO 2 3 1 Y 1 A SER 517 ? A SER 3 4 1 Y 1 A SER 719 ? A SER 205 5 1 Y 1 A ILE 720 ? A ILE 206 6 1 Y 1 A LEU 721 ? A LEU 207 7 1 Y 1 A LEU 722 ? A LEU 208 8 1 Y 1 A HIS 723 ? A HIS 209 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 7CH O2P O N N 1 7CH P P N N 2 7CH O1P O N N 3 7CH "O3'" O N N 4 7CH "C3'" C N S 5 7CH "C4'" C N R 6 7CH "C5'" C N N 7 7CH "O5'" O N N 8 7CH "C2'" C N R 9 7CH "O2'" O N N 10 7CH "C1'" C N R 11 7CH "O4'" O N N 12 7CH N9 N Y N 13 7CH C4 C Y N 14 7CH C5 C Y N 15 7CH C7 C Y N 16 7CH C8 C Y N 17 7CH N3 N Y N 18 7CH C2 C Y N 19 7CH N1 N Y N 20 7CH C6 C Y N 21 7CH N6 N N N 22 7CH H1 H N N 23 7CH H2 H N N 24 7CH H3 H N N 25 7CH H4 H N N 26 7CH H5 H N N 27 7CH H6 H N N 28 7CH H7 H N N 29 7CH H8 H N N 30 7CH H9 H N N 31 7CH H10 H N N 32 7CH H11 H N N 33 7CH H12 H N N 34 7CH H13 H N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 ARG N N N N 49 ARG CA C N S 50 ARG C C N N 51 ARG O O N N 52 ARG CB C N N 53 ARG CG C N N 54 ARG CD C N N 55 ARG NE N N N 56 ARG CZ C N N 57 ARG NH1 N N N 58 ARG NH2 N N N 59 ARG OXT O N N 60 ARG H H N N 61 ARG H2 H N N 62 ARG HA H N N 63 ARG HB2 H N N 64 ARG HB3 H N N 65 ARG HG2 H N N 66 ARG HG3 H N N 67 ARG HD2 H N N 68 ARG HD3 H N N 69 ARG HE H N N 70 ARG HH11 H N N 71 ARG HH12 H N N 72 ARG HH21 H N N 73 ARG HH22 H N N 74 ARG HXT H N N 75 ASN N N N N 76 ASN CA C N S 77 ASN C C N N 78 ASN O O N N 79 ASN CB C N N 80 ASN CG C N N 81 ASN OD1 O N N 82 ASN ND2 N N N 83 ASN OXT O N N 84 ASN H H N N 85 ASN H2 H N N 86 ASN HA H N N 87 ASN HB2 H N N 88 ASN HB3 H N N 89 ASN HD21 H N N 90 ASN HD22 H N N 91 ASN HXT H N N 92 ASP N N N N 93 ASP CA C N S 94 ASP C C N N 95 ASP O O N N 96 ASP CB C N N 97 ASP CG C N N 98 ASP OD1 O N N 99 ASP OD2 O N N 100 ASP OXT O N N 101 ASP H H N N 102 ASP H2 H N N 103 ASP HA H N N 104 ASP HB2 H N N 105 ASP HB3 H N N 106 ASP HD2 H N N 107 ASP HXT H N N 108 CSO N N N N 109 CSO CA C N R 110 CSO CB C N N 111 CSO SG S N N 112 CSO C C N N 113 CSO O O N N 114 CSO OXT O N N 115 CSO OD O N N 116 CSO H H N N 117 CSO H2 H N N 118 CSO HA H N N 119 CSO HB2 H N N 120 CSO HB3 H N N 121 CSO HXT H N N 122 CSO HD H N N 123 CYS N N N N 124 CYS CA C N R 125 CYS C C N N 126 CYS O O N N 127 CYS CB C N N 128 CYS SG S N N 129 CYS OXT O N N 130 CYS H H N N 131 CYS H2 H N N 132 CYS HA H N N 133 CYS HB2 H N N 134 CYS HB3 H N N 135 CYS HG H N N 136 CYS HXT H N N 137 GLN N N N N 138 GLN CA C N S 139 GLN C C N N 140 GLN O O N N 141 GLN CB C N N 142 GLN CG C N N 143 GLN CD C N N 144 GLN OE1 O N N 145 GLN NE2 N N N 146 GLN OXT O N N 147 GLN H H N N 148 GLN H2 H N N 149 GLN HA H N N 150 GLN HB2 H N N 151 GLN HB3 H N N 152 GLN HG2 H N N 153 GLN HG3 H N N 154 GLN HE21 H N N 155 GLN HE22 H N N 156 GLN HXT H N N 157 GLU N N N N 158 GLU CA C N S 159 GLU C C N N 160 GLU O O N N 161 GLU CB C N N 162 GLU CG C N N 163 GLU CD C N N 164 GLU OE1 O N N 165 GLU OE2 O N N 166 GLU OXT O N N 167 GLU H H N N 168 GLU H2 H N N 169 GLU HA H N N 170 GLU HB2 H N N 171 GLU HB3 H N N 172 GLU HG2 H N N 173 GLU HG3 H N N 174 GLU HE2 H N N 175 GLU HXT H N N 176 GLY N N N N 177 GLY CA C N N 178 GLY C C N N 179 GLY O O N N 180 GLY OXT O N N 181 GLY H H N N 182 GLY H2 H N N 183 GLY HA2 H N N 184 GLY HA3 H N N 185 GLY HXT H N N 186 HIS N N N N 187 HIS CA C N S 188 HIS C C N N 189 HIS O O N N 190 HIS CB C N N 191 HIS CG C Y N 192 HIS ND1 N Y N 193 HIS CD2 C Y N 194 HIS CE1 C Y N 195 HIS NE2 N Y N 196 HIS OXT O N N 197 HIS H H N N 198 HIS H2 H N N 199 HIS HA H N N 200 HIS HB2 H N N 201 HIS HB3 H N N 202 HIS HD1 H N N 203 HIS HD2 H N N 204 HIS HE1 H N N 205 HIS HE2 H N N 206 HIS HXT H N N 207 HOH O O N N 208 HOH H1 H N N 209 HOH H2 H N N 210 ILE N N N N 211 ILE CA C N S 212 ILE C C N N 213 ILE O O N N 214 ILE CB C N S 215 ILE CG1 C N N 216 ILE CG2 C N N 217 ILE CD1 C N N 218 ILE OXT O N N 219 ILE H H N N 220 ILE H2 H N N 221 ILE HA H N N 222 ILE HB H N N 223 ILE HG12 H N N 224 ILE HG13 H N N 225 ILE HG21 H N N 226 ILE HG22 H N N 227 ILE HG23 H N N 228 ILE HD11 H N N 229 ILE HD12 H N N 230 ILE HD13 H N N 231 ILE HXT H N N 232 LEU N N N N 233 LEU CA C N S 234 LEU C C N N 235 LEU O O N N 236 LEU CB C N N 237 LEU CG C N N 238 LEU CD1 C N N 239 LEU CD2 C N N 240 LEU OXT O N N 241 LEU H H N N 242 LEU H2 H N N 243 LEU HA H N N 244 LEU HB2 H N N 245 LEU HB3 H N N 246 LEU HG H N N 247 LEU HD11 H N N 248 LEU HD12 H N N 249 LEU HD13 H N N 250 LEU HD21 H N N 251 LEU HD22 H N N 252 LEU HD23 H N N 253 LEU HXT H N N 254 LYS N N N N 255 LYS CA C N S 256 LYS C C N N 257 LYS O O N N 258 LYS CB C N N 259 LYS CG C N N 260 LYS CD C N N 261 LYS CE C N N 262 LYS NZ N N N 263 LYS OXT O N N 264 LYS H H N N 265 LYS H2 H N N 266 LYS HA H N N 267 LYS HB2 H N N 268 LYS HB3 H N N 269 LYS HG2 H N N 270 LYS HG3 H N N 271 LYS HD2 H N N 272 LYS HD3 H N N 273 LYS HE2 H N N 274 LYS HE3 H N N 275 LYS HZ1 H N N 276 LYS HZ2 H N N 277 LYS HZ3 H N N 278 LYS HXT H N N 279 MET N N N N 280 MET CA C N S 281 MET C C N N 282 MET O O N N 283 MET CB C N N 284 MET CG C N N 285 MET SD S N N 286 MET CE C N N 287 MET OXT O N N 288 MET H H N N 289 MET H2 H N N 290 MET HA H N N 291 MET HB2 H N N 292 MET HB3 H N N 293 MET HG2 H N N 294 MET HG3 H N N 295 MET HE1 H N N 296 MET HE2 H N N 297 MET HE3 H N N 298 MET HXT H N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 VAL N N N N 395 VAL CA C N S 396 VAL C C N N 397 VAL O O N N 398 VAL CB C N N 399 VAL CG1 C N N 400 VAL CG2 C N N 401 VAL OXT O N N 402 VAL H H N N 403 VAL H2 H N N 404 VAL HA H N N 405 VAL HB H N N 406 VAL HG11 H N N 407 VAL HG12 H N N 408 VAL HG13 H N N 409 VAL HG21 H N N 410 VAL HG22 H N N 411 VAL HG23 H N N 412 VAL HXT H N N 413 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7CH C2 N3 doub Y N 1 7CH C2 N1 sing Y N 2 7CH N3 C4 sing Y N 3 7CH "O2'" "C2'" sing N N 4 7CH "C4'" "O4'" sing N N 5 7CH "C4'" "C5'" sing N N 6 7CH "C4'" "C3'" sing N N 7 7CH "O4'" "C1'" sing N N 8 7CH "C5'" "O5'" sing N N 9 7CH "C1'" "C2'" sing N N 10 7CH "C1'" N9 sing N N 11 7CH "O5'" P sing N N 12 7CH N1 C6 doub Y N 13 7CH C4 N9 sing Y N 14 7CH C4 C5 doub Y N 15 7CH "C2'" "C3'" sing N N 16 7CH N9 C8 sing Y N 17 7CH "C3'" "O3'" sing N N 18 7CH "O3'" P sing N N 19 7CH O2P P doub N N 20 7CH P O1P sing N N 21 7CH C6 C5 sing Y N 22 7CH C6 N6 sing N N 23 7CH C5 C7 sing Y N 24 7CH C8 C7 doub Y N 25 7CH O1P H1 sing N N 26 7CH "C3'" H2 sing N N 27 7CH "C4'" H3 sing N N 28 7CH "C5'" H4 sing N N 29 7CH "C5'" H5 sing N N 30 7CH "C2'" H6 sing N N 31 7CH "O2'" H7 sing N N 32 7CH "C1'" H8 sing N N 33 7CH C7 H9 sing N N 34 7CH C8 H10 sing N N 35 7CH C2 H11 sing N N 36 7CH N6 H12 sing N N 37 7CH N6 H13 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CSO N CA sing N N 108 CSO N H sing N N 109 CSO N H2 sing N N 110 CSO CA CB sing N N 111 CSO CA C sing N N 112 CSO CA HA sing N N 113 CSO CB SG sing N N 114 CSO CB HB2 sing N N 115 CSO CB HB3 sing N N 116 CSO SG OD sing N N 117 CSO C O doub N N 118 CSO C OXT sing N N 119 CSO OXT HXT sing N N 120 CSO OD HD sing N N 121 CYS N CA sing N N 122 CYS N H sing N N 123 CYS N H2 sing N N 124 CYS CA C sing N N 125 CYS CA CB sing N N 126 CYS CA HA sing N N 127 CYS C O doub N N 128 CYS C OXT sing N N 129 CYS CB SG sing N N 130 CYS CB HB2 sing N N 131 CYS CB HB3 sing N N 132 CYS SG HG sing N N 133 CYS OXT HXT sing N N 134 GLN N CA sing N N 135 GLN N H sing N N 136 GLN N H2 sing N N 137 GLN CA C sing N N 138 GLN CA CB sing N N 139 GLN CA HA sing N N 140 GLN C O doub N N 141 GLN C OXT sing N N 142 GLN CB CG sing N N 143 GLN CB HB2 sing N N 144 GLN CB HB3 sing N N 145 GLN CG CD sing N N 146 GLN CG HG2 sing N N 147 GLN CG HG3 sing N N 148 GLN CD OE1 doub N N 149 GLN CD NE2 sing N N 150 GLN NE2 HE21 sing N N 151 GLN NE2 HE22 sing N N 152 GLN OXT HXT sing N N 153 GLU N CA sing N N 154 GLU N H sing N N 155 GLU N H2 sing N N 156 GLU CA C sing N N 157 GLU CA CB sing N N 158 GLU CA HA sing N N 159 GLU C O doub N N 160 GLU C OXT sing N N 161 GLU CB CG sing N N 162 GLU CB HB2 sing N N 163 GLU CB HB3 sing N N 164 GLU CG CD sing N N 165 GLU CG HG2 sing N N 166 GLU CG HG3 sing N N 167 GLU CD OE1 doub N N 168 GLU CD OE2 sing N N 169 GLU OE2 HE2 sing N N 170 GLU OXT HXT sing N N 171 GLY N CA sing N N 172 GLY N H sing N N 173 GLY N H2 sing N N 174 GLY CA C sing N N 175 GLY CA HA2 sing N N 176 GLY CA HA3 sing N N 177 GLY C O doub N N 178 GLY C OXT sing N N 179 GLY OXT HXT sing N N 180 HIS N CA sing N N 181 HIS N H sing N N 182 HIS N H2 sing N N 183 HIS CA C sing N N 184 HIS CA CB sing N N 185 HIS CA HA sing N N 186 HIS C O doub N N 187 HIS C OXT sing N N 188 HIS CB CG sing N N 189 HIS CB HB2 sing N N 190 HIS CB HB3 sing N N 191 HIS CG ND1 sing Y N 192 HIS CG CD2 doub Y N 193 HIS ND1 CE1 doub Y N 194 HIS ND1 HD1 sing N N 195 HIS CD2 NE2 sing Y N 196 HIS CD2 HD2 sing N N 197 HIS CE1 NE2 sing Y N 198 HIS CE1 HE1 sing N N 199 HIS NE2 HE2 sing N N 200 HIS OXT HXT sing N N 201 HOH O H1 sing N N 202 HOH O H2 sing N N 203 ILE N CA sing N N 204 ILE N H sing N N 205 ILE N H2 sing N N 206 ILE CA C sing N N 207 ILE CA CB sing N N 208 ILE CA HA sing N N 209 ILE C O doub N N 210 ILE C OXT sing N N 211 ILE CB CG1 sing N N 212 ILE CB CG2 sing N N 213 ILE CB HB sing N N 214 ILE CG1 CD1 sing N N 215 ILE CG1 HG12 sing N N 216 ILE CG1 HG13 sing N N 217 ILE CG2 HG21 sing N N 218 ILE CG2 HG22 sing N N 219 ILE CG2 HG23 sing N N 220 ILE CD1 HD11 sing N N 221 ILE CD1 HD12 sing N N 222 ILE CD1 HD13 sing N N 223 ILE OXT HXT sing N N 224 LEU N CA sing N N 225 LEU N H sing N N 226 LEU N H2 sing N N 227 LEU CA C sing N N 228 LEU CA CB sing N N 229 LEU CA HA sing N N 230 LEU C O doub N N 231 LEU C OXT sing N N 232 LEU CB CG sing N N 233 LEU CB HB2 sing N N 234 LEU CB HB3 sing N N 235 LEU CG CD1 sing N N 236 LEU CG CD2 sing N N 237 LEU CG HG sing N N 238 LEU CD1 HD11 sing N N 239 LEU CD1 HD12 sing N N 240 LEU CD1 HD13 sing N N 241 LEU CD2 HD21 sing N N 242 LEU CD2 HD22 sing N N 243 LEU CD2 HD23 sing N N 244 LEU OXT HXT sing N N 245 LYS N CA sing N N 246 LYS N H sing N N 247 LYS N H2 sing N N 248 LYS CA C sing N N 249 LYS CA CB sing N N 250 LYS CA HA sing N N 251 LYS C O doub N N 252 LYS C OXT sing N N 253 LYS CB CG sing N N 254 LYS CB HB2 sing N N 255 LYS CB HB3 sing N N 256 LYS CG CD sing N N 257 LYS CG HG2 sing N N 258 LYS CG HG3 sing N N 259 LYS CD CE sing N N 260 LYS CD HD2 sing N N 261 LYS CD HD3 sing N N 262 LYS CE NZ sing N N 263 LYS CE HE2 sing N N 264 LYS CE HE3 sing N N 265 LYS NZ HZ1 sing N N 266 LYS NZ HZ2 sing N N 267 LYS NZ HZ3 sing N N 268 LYS OXT HXT sing N N 269 MET N CA sing N N 270 MET N H sing N N 271 MET N H2 sing N N 272 MET CA C sing N N 273 MET CA CB sing N N 274 MET CA HA sing N N 275 MET C O doub N N 276 MET C OXT sing N N 277 MET CB CG sing N N 278 MET CB HB2 sing N N 279 MET CB HB3 sing N N 280 MET CG SD sing N N 281 MET CG HG2 sing N N 282 MET CG HG3 sing N N 283 MET SD CE sing N N 284 MET CE HE1 sing N N 285 MET CE HE2 sing N N 286 MET CE HE3 sing N N 287 MET OXT HXT sing N N 288 PHE N CA sing N N 289 PHE N H sing N N 290 PHE N H2 sing N N 291 PHE CA C sing N N 292 PHE CA CB sing N N 293 PHE CA HA sing N N 294 PHE C O doub N N 295 PHE C OXT sing N N 296 PHE CB CG sing N N 297 PHE CB HB2 sing N N 298 PHE CB HB3 sing N N 299 PHE CG CD1 doub Y N 300 PHE CG CD2 sing Y N 301 PHE CD1 CE1 sing Y N 302 PHE CD1 HD1 sing N N 303 PHE CD2 CE2 doub Y N 304 PHE CD2 HD2 sing N N 305 PHE CE1 CZ doub Y N 306 PHE CE1 HE1 sing N N 307 PHE CE2 CZ sing Y N 308 PHE CE2 HE2 sing N N 309 PHE CZ HZ sing N N 310 PHE OXT HXT sing N N 311 PRO N CA sing N N 312 PRO N CD sing N N 313 PRO N H sing N N 314 PRO CA C sing N N 315 PRO CA CB sing N N 316 PRO CA HA sing N N 317 PRO C O doub N N 318 PRO C OXT sing N N 319 PRO CB CG sing N N 320 PRO CB HB2 sing N N 321 PRO CB HB3 sing N N 322 PRO CG CD sing N N 323 PRO CG HG2 sing N N 324 PRO CG HG3 sing N N 325 PRO CD HD2 sing N N 326 PRO CD HD3 sing N N 327 PRO OXT HXT sing N N 328 SER N CA sing N N 329 SER N H sing N N 330 SER N H2 sing N N 331 SER CA C sing N N 332 SER CA CB sing N N 333 SER CA HA sing N N 334 SER C O doub N N 335 SER C OXT sing N N 336 SER CB OG sing N N 337 SER CB HB2 sing N N 338 SER CB HB3 sing N N 339 SER OG HG sing N N 340 SER OXT HXT sing N N 341 THR N CA sing N N 342 THR N H sing N N 343 THR N H2 sing N N 344 THR CA C sing N N 345 THR CA CB sing N N 346 THR CA HA sing N N 347 THR C O doub N N 348 THR C OXT sing N N 349 THR CB OG1 sing N N 350 THR CB CG2 sing N N 351 THR CB HB sing N N 352 THR OG1 HG1 sing N N 353 THR CG2 HG21 sing N N 354 THR CG2 HG22 sing N N 355 THR CG2 HG23 sing N N 356 THR OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # _pdbx_initial_refinement_model.accession_code 3U11 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'PDB ENTRY 3U11_A' # _atom_sites.entry_id 4NVP _atom_sites.fract_transf_matrix[1][1] 0.010416 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019932 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_