HEADER TRANSFERASE 11-DEC-13 4NYZ TITLE THE EMCV 3DPOL STRUCTURE WITH ALTERED MOTIF A CONFORMATION AT 2.15A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1834-2293; COMPND 5 SYNONYM: LEADER PROTEIN, PROTEIN VP0, VP4-VP2, PROTEIN VP4, P1A, RHO, COMPND 6 VIRION PROTEIN 4, PROTEIN VP2, BETA, P1B, VIRION PROTEIN 2, PROTEIN COMPND 7 VP3, GAMMA, P1C, VIRION PROTEIN 3, PROTEIN VP1, ALPHA, P1D, VIRION COMPND 8 PROTEIN 1, PROTEIN 2A, P2A, G, PROTEIN 2B, I, P2B, PROTEIN 2C, C, COMPND 9 P2C, PROTEIN 3A, P3A, PROTEIN 3B, P3B, H, VPG, PROTEASE 3C, P3C, COMPND 10 PICORNAIN 3C, P22, RNA-DIRECTED RNA POLYMERASE 3D-POL, E, P3D-POL; COMPND 11 EC: 3.6.1.15, 3.4.22.28, 2.7.7.48; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MENGO VIRUS; SOURCE 3 ORGANISM_TAXID: 12107; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETG20A KEYWDS ENCEPHALOMYOCARDITIS VIRUS, CLOSE RIGHT HAND, RNA DEPENDENT RNA KEYWDS 2 POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.VIVES-ADRIAN,C.LUJAN,C.FERRER-ORTA,N.VERDAGUER REVDAT 3 08-NOV-23 4NYZ 1 REMARK LINK REVDAT 2 10-DEC-14 4NYZ 1 JRNL REVDAT 1 19-MAR-14 4NYZ 0 JRNL AUTH L.VIVES-ADRIAN,C.LUJAN,B.OLIVA,L.VAN DER LINDEN,B.SELISKO, JRNL AUTH 2 B.COUTARD,B.CANARD,F.J.VAN KUPPEVELD,C.FERRER-ORTA, JRNL AUTH 3 N.VERDAGUER JRNL TITL THE CRYSTAL STRUCTURE OF A CARDIOVIRUS RNA-DEPENDENT RNA JRNL TITL 2 POLYMERASE REVEALS AN UNUSUAL CONFORMATION OF THE POLYMERASE JRNL TITL 3 ACTIVE SITE JRNL REF J.VIROL. V. 88 5595 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24600002 JRNL DOI 10.1128/JVI.03502-13 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 104.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 38457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2816 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3806 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3623 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5158 ; 0.877 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8337 ; 0.700 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 4.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;30.172 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;14.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;14.787 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4286 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 891 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1852 ; 0.528 ; 2.478 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1851 ; 0.528 ; 2.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2315 ; 0.976 ; 3.713 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2316 ; 0.976 ; 3.714 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1953 ; 0.413 ; 2.494 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1953 ; 0.414 ; 2.494 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2844 ; 0.750 ; 3.721 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4274 ; 2.871 ;19.515 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4275 ; 2.871 ;19.519 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6644 -29.2899 -23.9081 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0695 REMARK 3 T33: 0.0350 T12: -0.0018 REMARK 3 T13: 0.0182 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.6692 L22: 1.3987 REMARK 3 L33: 2.0261 L12: -0.2524 REMARK 3 L13: 0.3984 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0185 S13: 0.1301 REMARK 3 S21: -0.1688 S22: -0.0111 S23: -0.0899 REMARK 3 S31: -0.0865 S32: 0.3273 S33: 0.0330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40499 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 104.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : 0.77000 REMARK 200 FOR SHELL : 18.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U09(THE HOMOLOGY MODEL HAS BEEN USED.) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%PEG6000 AND 2.0M NACL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 61.27650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.39850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.69925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.27650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.09775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.09775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.27650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.69925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 61.27650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.39850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.27650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 99.39850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.27650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 149.09775 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 49.69925 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.27650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.69925 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 149.09775 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.27650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.27650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 99.39850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 658 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 45.52 -82.85 REMARK 500 LEU A 99 -149.30 -134.77 REMARK 500 MET A 102 132.71 67.17 REMARK 500 THR A 130 -9.68 66.51 REMARK 500 ASN A 146 33.48 -93.47 REMARK 500 PHE A 255 -68.47 -108.58 REMARK 500 GLU A 281 -124.07 56.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 159 O REMARK 620 2 GLU A 161 OE2 104.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 RELATED ID: 4NZ0 RELATED DB: PDB DBREF 4NYZ A 1 460 UNP P12296 POLG_ENMGO 1834 2293 SEQRES 1 A 460 GLY ALA LEU GLU ARG LEU PRO ASP GLY PRO ARG ILE HIS SEQRES 2 A 460 VAL PRO ARG LYS THR ALA LEU ARG PRO THR VAL ALA ARG SEQRES 3 A 460 GLN VAL PHE GLN PRO ALA PHE ALA PRO ALA VAL LEU SER SEQRES 4 A 460 LYS PHE ASP PRO ARG THR ASP ALA ASP VAL ASP GLU VAL SEQRES 5 A 460 ALA PHE SER LYS HIS THR SER ASN GLN GLU THR LEU PRO SEQRES 6 A 460 PRO VAL PHE ARG MET VAL ALA ARG GLU TYR ALA ASN ARG SEQRES 7 A 460 VAL PHE ALA LEU LEU GLY ARG ASP ASN GLY ARG LEU SER SEQRES 8 A 460 VAL LYS GLN ALA LEU ASP GLY LEU GLU GLY MET ASP PRO SEQRES 9 A 460 MET ASP LYS ASN THR SER PRO GLY LEU PRO TYR THR THR SEQRES 10 A 460 LEU GLY MET ARG ARG THR ASP VAL VAL ASP TRP GLU THR SEQRES 11 A 460 ALA THR LEU ILE PRO PHE ALA ALA GLU ARG LEU GLU LYS SEQRES 12 A 460 MET ASN ASN LYS ASP PHE SER ASP ILE VAL TYR GLN THR SEQRES 13 A 460 PHE LEU LYS ASP GLU LEU ARG PRO ILE GLU LYS VAL GLN SEQRES 14 A 460 ALA ALA LYS THR ARG ILE VAL ASP VAL PRO PRO PHE GLU SEQRES 15 A 460 HIS CYS ILE LEU GLY ARG GLN LEU LEU GLY LYS PHE ALA SEQRES 16 A 460 SER LYS PHE GLN THR GLN PRO GLY LEU GLU LEU GLY SER SEQRES 17 A 460 ALA ILE GLY CYS ASP PRO ASP VAL HIS TRP THR ALA PHE SEQRES 18 A 460 GLY VAL ALA MET GLN GLY PHE GLU ARG VAL TYR ASP VAL SEQRES 19 A 460 ASP TYR SER ASN PHE ASP SER THR HIS SER VAL ALA VAL SEQRES 20 A 460 PHE ARG LEU LEU ALA GLU GLU PHE PHE SER GLU GLU ASN SEQRES 21 A 460 GLY PHE ASP PRO LEU VAL LYS ASP TYR LEU GLU SER LEU SEQRES 22 A 460 ALA ILE SER LYS HIS ALA TYR GLU GLU LYS ARG TYR LEU SEQRES 23 A 460 ILE THR GLY GLY LEU PRO SER GLY CYS ALA ALA THR SER SEQRES 24 A 460 MET LEU ASN THR ILE MET ASN ASN ILE ILE ILE ARG ALA SEQRES 25 A 460 GLY LEU TYR LEU THR TYR LYS ASN PHE GLU PHE ASP ASP SEQRES 26 A 460 VAL LYS VAL LEU SER TYR GLY ASP ASP LEU LEU VAL ALA SEQRES 27 A 460 THR ASN TYR GLN LEU ASN PHE ASP ARG VAL ARG THR SER SEQRES 28 A 460 LEU ALA LYS THR GLY TYR LYS ILE THR PRO ALA ASN LYS SEQRES 29 A 460 THR SER THR PHE PRO LEU GLU SER THR LEU GLU ASP VAL SEQRES 30 A 460 VAL PHE LEU LYS ARG LYS PHE LYS LYS GLU GLY PRO LEU SEQRES 31 A 460 TYR ARG PRO VAL MET ASN ARG GLU ALA LEU GLU ALA MET SEQRES 32 A 460 LEU SER TYR TYR ARG PRO GLY THR LEU SER GLU LYS LEU SEQRES 33 A 460 THR SER ILE THR MET LEU ALA VAL HIS SER GLY LYS GLN SEQRES 34 A 460 GLU TYR ASP ARG LEU PHE ALA PRO PHE ARG GLU VAL GLY SEQRES 35 A 460 VAL ILE VAL PRO THR PHE GLU SER VAL GLU TYR ARG TRP SEQRES 36 A 460 ARG SER LEU PHE TRP HET GLN A 501 10 HET MG A 502 1 HET GOL A 503 6 HETNAM GLN GLUTAMINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLN C5 H10 N2 O3 FORMUL 3 MG MG 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *110(H2 O) HELIX 1 1 ALA A 25 GLN A 30 1 6 HELIX 2 2 ASP A 48 ALA A 53 1 6 HELIX 3 3 PHE A 54 THR A 58 5 5 HELIX 4 4 PRO A 65 GLY A 84 1 20 HELIX 5 5 SER A 91 GLY A 98 1 8 HELIX 6 6 ARG A 121 VAL A 125 1 5 HELIX 7 7 ILE A 134 ASN A 146 1 13 HELIX 8 8 ILE A 165 ALA A 170 1 6 HELIX 9 9 PRO A 180 GLN A 199 1 20 HELIX 10 10 ASP A 213 GLN A 226 1 14 HELIX 11 11 SER A 244 PHE A 255 1 12 HELIX 12 12 SER A 257 GLY A 261 5 5 HELIX 13 13 LEU A 265 ALA A 274 1 10 HELIX 14 14 ALA A 297 TYR A 318 1 22 HELIX 15 15 GLU A 322 VAL A 326 5 5 HELIX 16 16 ASN A 344 LYS A 354 1 11 HELIX 17 17 ASN A 396 SER A 405 1 10 HELIX 18 18 THR A 411 VAL A 424 1 14 HELIX 19 19 GLY A 427 VAL A 441 1 15 HELIX 20 20 THR A 447 LEU A 458 1 12 SHEET 1 A 5 LEU A 3 ARG A 5 0 SHEET 2 A 5 LYS A 283 THR A 288 -1 O LEU A 286 N GLU A 4 SHEET 3 A 5 ILE A 275 TYR A 280 -1 N HIS A 278 O TYR A 285 SHEET 4 A 5 TYR A 154 LEU A 158 1 N TYR A 154 O ALA A 279 SHEET 5 A 5 ILE A 175 VAL A 178 -1 O VAL A 176 N PHE A 157 SHEET 1 B 2 ARG A 21 PRO A 22 0 SHEET 2 B 2 TYR A 406 TYR A 407 -1 O TYR A 407 N ARG A 21 SHEET 1 C 2 PHE A 33 PRO A 35 0 SHEET 2 C 2 LEU A 162 PRO A 164 -1 O ARG A 163 N ALA A 34 SHEET 1 D 2 VAL A 126 ASP A 127 0 SHEET 2 D 2 THR A 132 LEU A 133 -1 O THR A 132 N ASP A 127 SHEET 1 E 3 ARG A 230 ASP A 235 0 SHEET 2 E 3 ASP A 334 THR A 339 -1 O LEU A 335 N VAL A 234 SHEET 3 E 3 LYS A 327 TYR A 331 -1 N LYS A 327 O ALA A 338 SHEET 1 F 2 ARG A 382 GLU A 387 0 SHEET 2 F 2 LEU A 390 MET A 395 -1 O LEU A 390 N GLU A 387 LINK O LYS A 159 MG MG A 502 1555 1555 2.82 LINK OE2 GLU A 161 MG MG A 502 1555 1555 2.72 CISPEP 1 LEU A 113 PRO A 114 0 0.28 SITE 1 AC1 14 TYR A 236 ASN A 238 SER A 241 THR A 242 SITE 2 AC1 14 HIS A 243 GLY A 290 LEU A 291 ASP A 333 SITE 3 AC1 14 HOH A 625 HOH A 642 HOH A 692 HOH A 695 SITE 4 AC1 14 HOH A 698 HOH A 707 SITE 1 AC2 6 ALA A 36 LYS A 159 GLU A 161 ARG A 163 SITE 2 AC2 6 THR A 173 ARG A 174 SITE 1 AC3 4 PHE A 33 LYS A 381 ALA A 399 HOH A 677 CRYST1 122.553 122.553 198.797 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005030 0.00000