data_4O41 # _entry.id 4O41 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4O41 pdb_00004o41 10.2210/pdb4o41/pdb NDB NA2832 ? ? RCSB RCSB084014 ? ? WWPDB D_1000084014 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-09 2 'Structure model' 1 1 2014-09-03 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4O41 _pdbx_database_status.recvd_initial_deposition_date 2013-12-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Egli, M.' 2 # _citation.id primary _citation.title 'Amides are excellent mimics of phosphate internucleoside linkages and are well tolerated in short interfering RNAs.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 6542 _citation.page_last 6551 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24813446 _citation.pdbx_database_id_DOI 10.1093/nar/gku235 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mutisya, D.' 1 ? primary 'Selvam, C.' 2 ? primary 'Lunstad, B.D.' 3 ? primary 'Pallan, P.S.' 4 ? primary 'Haas, A.' 5 ? primary 'Leake, D.' 6 ? primary 'Egli, M.' 7 ? primary 'Rozners, E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'AMIDE LINKED RNA' 4071.534 4 ? ? ? ;Short NA strands UGAGC(URU)CGGCUC, where URU represents the amide linked residue ; 2 non-polymer syn 'STRONTIUM ION' 87.620 2 ? ? ? ? 3 water nat water 18.015 284 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UGAGC(URU)CGGCUC' _entity_poly.pdbx_seq_one_letter_code_can UGAGCXCGGCUC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 A n 1 4 G n 1 5 C n 1 6 URU n 1 7 C n 1 8 G n 1 9 G n 1 10 C n 1 11 U n 1 12 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized modified Ribo Nucleic Acid' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 URU 'RNA linking' . ;((2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3-(2- ((((2R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)- 3,4-dihydroxytetrahydrofuran-2-yl)methyl)amino)-2-oxoethyl)-4- hydroxytetrahydrofuran-2-yl)methyl phosphate ; ? 'C20 H26 N5 O14 P' 591.419 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 101 ? ? ? A . n A 1 2 G 2 102 102 G G A . n A 1 3 A 3 103 103 A A A . n A 1 4 G 4 104 104 G G A . n A 1 5 C 5 105 105 C C A . n A 1 6 URU 6 106 106 URU URU A . n A 1 7 C 7 108 108 C C A . n A 1 8 G 8 109 109 G G A . n A 1 9 G 9 110 110 G G A . n A 1 10 C 10 111 111 C C A . n A 1 11 U 11 112 112 U U A . n A 1 12 C 12 113 113 C C A . n B 1 1 U 1 201 201 U U B . n B 1 2 G 2 202 202 G G B . n B 1 3 A 3 203 203 A A B . n B 1 4 G 4 204 204 G G B . n B 1 5 C 5 205 205 C C B . n B 1 6 URU 6 206 206 URU URU B . n B 1 7 C 7 208 208 C C B . n B 1 8 G 8 209 209 G G B . n B 1 9 G 9 210 210 G G B . n B 1 10 C 10 211 211 C C B . n B 1 11 U 11 212 212 U U B . n B 1 12 C 12 213 213 C C B . n C 1 1 U 1 301 ? ? ? C . n C 1 2 G 2 302 302 G G C . n C 1 3 A 3 303 303 A A C . n C 1 4 G 4 304 304 G G C . n C 1 5 C 5 305 305 C C C . n C 1 6 URU 6 306 306 URU URU C . n C 1 7 C 7 308 308 C C C . n C 1 8 G 8 309 309 G G C . n C 1 9 G 9 310 310 G G C . n C 1 10 C 10 311 311 C C C . n C 1 11 U 11 312 312 U U C . n C 1 12 C 12 313 313 C C C . n D 1 1 U 1 401 ? ? ? D . n D 1 2 G 2 402 402 G G D . n D 1 3 A 3 403 403 A A D . n D 1 4 G 4 404 404 G G D . n D 1 5 C 5 405 405 C C D . n D 1 6 URU 6 406 406 URU URU D . n D 1 7 C 7 408 408 C C D . n D 1 8 G 8 409 409 G G D . n D 1 9 G 9 410 410 G G D . n D 1 10 C 10 411 411 C C D . n D 1 11 U 11 412 412 U U D . n D 1 12 C 12 413 413 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SR 1 701 701 SR SR A . F 2 SR 1 702 702 SR SR A . G 3 HOH 1 801 706 HOH HOH A . G 3 HOH 2 802 708 HOH HOH A . G 3 HOH 3 803 725 HOH HOH A . G 3 HOH 4 804 726 HOH HOH A . G 3 HOH 5 805 728 HOH HOH A . G 3 HOH 6 806 730 HOH HOH A . G 3 HOH 7 807 743 HOH HOH A . G 3 HOH 8 808 744 HOH HOH A . G 3 HOH 9 809 746 HOH HOH A . G 3 HOH 10 810 747 HOH HOH A . G 3 HOH 11 811 748 HOH HOH A . G 3 HOH 12 812 749 HOH HOH A . G 3 HOH 13 813 753 HOH HOH A . G 3 HOH 14 814 770 HOH HOH A . G 3 HOH 15 815 771 HOH HOH A . G 3 HOH 16 816 772 HOH HOH A . G 3 HOH 17 817 774 HOH HOH A . G 3 HOH 18 818 777 HOH HOH A . G 3 HOH 19 819 778 HOH HOH A . G 3 HOH 20 820 779 HOH HOH A . G 3 HOH 21 821 783 HOH HOH A . G 3 HOH 22 822 785 HOH HOH A . G 3 HOH 23 823 786 HOH HOH A . G 3 HOH 24 824 790 HOH HOH A . G 3 HOH 25 825 806 HOH HOH A . G 3 HOH 26 826 807 HOH HOH A . G 3 HOH 27 827 811 HOH HOH A . G 3 HOH 28 828 813 HOH HOH A . G 3 HOH 29 829 821 HOH HOH A . G 3 HOH 30 830 822 HOH HOH A . G 3 HOH 31 831 823 HOH HOH A . G 3 HOH 32 832 827 HOH HOH A . G 3 HOH 33 833 837 HOH HOH A . G 3 HOH 34 834 841 HOH HOH A . G 3 HOH 35 835 849 HOH HOH A . G 3 HOH 36 836 860 HOH HOH A . G 3 HOH 37 837 865 HOH HOH A . G 3 HOH 38 838 868 HOH HOH A . G 3 HOH 39 839 869 HOH HOH A . G 3 HOH 40 840 870 HOH HOH A . G 3 HOH 41 841 871 HOH HOH A . G 3 HOH 42 842 880 HOH HOH A . G 3 HOH 43 843 882 HOH HOH A . G 3 HOH 44 844 883 HOH HOH A . G 3 HOH 45 845 885 HOH HOH A . G 3 HOH 46 846 887 HOH HOH A . G 3 HOH 47 847 888 HOH HOH A . G 3 HOH 48 848 889 HOH HOH A . G 3 HOH 49 849 892 HOH HOH A . G 3 HOH 50 850 898 HOH HOH A . G 3 HOH 51 851 899 HOH HOH A . G 3 HOH 52 852 903 HOH HOH A . G 3 HOH 53 853 905 HOH HOH A . G 3 HOH 54 854 914 HOH HOH A . G 3 HOH 55 855 921 HOH HOH A . G 3 HOH 56 856 924 HOH HOH A . G 3 HOH 57 857 925 HOH HOH A . G 3 HOH 58 858 931 HOH HOH A . G 3 HOH 59 859 935 HOH HOH A . G 3 HOH 60 860 937 HOH HOH A . G 3 HOH 61 861 942 HOH HOH A . G 3 HOH 62 862 956 HOH HOH A . G 3 HOH 63 863 958 HOH HOH A . G 3 HOH 64 864 961 HOH HOH A . G 3 HOH 65 865 962 HOH HOH A . G 3 HOH 66 866 970 HOH HOH A . G 3 HOH 67 867 973 HOH HOH A . G 3 HOH 68 868 979 HOH HOH A . G 3 HOH 69 869 981 HOH HOH A . G 3 HOH 70 870 982 HOH HOH A . G 3 HOH 71 871 984 HOH HOH A . H 3 HOH 1 301 703 HOH HOH B . H 3 HOH 2 302 704 HOH HOH B . H 3 HOH 3 303 705 HOH HOH B . H 3 HOH 4 304 707 HOH HOH B . H 3 HOH 5 305 727 HOH HOH B . H 3 HOH 6 306 729 HOH HOH B . H 3 HOH 7 307 731 HOH HOH B . H 3 HOH 8 308 732 HOH HOH B . H 3 HOH 9 309 733 HOH HOH B . H 3 HOH 10 310 734 HOH HOH B . H 3 HOH 11 311 735 HOH HOH B . H 3 HOH 12 312 736 HOH HOH B . H 3 HOH 13 313 737 HOH HOH B . H 3 HOH 14 314 738 HOH HOH B . H 3 HOH 15 315 739 HOH HOH B . H 3 HOH 16 316 740 HOH HOH B . H 3 HOH 17 317 742 HOH HOH B . H 3 HOH 18 318 745 HOH HOH B . H 3 HOH 19 319 750 HOH HOH B . H 3 HOH 20 320 761 HOH HOH B . H 3 HOH 21 321 767 HOH HOH B . H 3 HOH 22 322 775 HOH HOH B . H 3 HOH 23 323 787 HOH HOH B . H 3 HOH 24 324 788 HOH HOH B . H 3 HOH 25 325 796 HOH HOH B . H 3 HOH 26 326 797 HOH HOH B . H 3 HOH 27 327 802 HOH HOH B . H 3 HOH 28 328 808 HOH HOH B . H 3 HOH 29 329 810 HOH HOH B . H 3 HOH 30 330 814 HOH HOH B . H 3 HOH 31 331 815 HOH HOH B . H 3 HOH 32 332 817 HOH HOH B . H 3 HOH 33 333 828 HOH HOH B . H 3 HOH 34 334 833 HOH HOH B . H 3 HOH 35 335 835 HOH HOH B . H 3 HOH 36 336 839 HOH HOH B . H 3 HOH 37 337 840 HOH HOH B . H 3 HOH 38 338 843 HOH HOH B . H 3 HOH 39 339 844 HOH HOH B . H 3 HOH 40 340 846 HOH HOH B . H 3 HOH 41 341 851 HOH HOH B . H 3 HOH 42 342 852 HOH HOH B . H 3 HOH 43 343 853 HOH HOH B . H 3 HOH 44 344 855 HOH HOH B . H 3 HOH 45 345 864 HOH HOH B . H 3 HOH 46 346 867 HOH HOH B . H 3 HOH 47 347 875 HOH HOH B . H 3 HOH 48 348 877 HOH HOH B . H 3 HOH 49 349 878 HOH HOH B . H 3 HOH 50 350 881 HOH HOH B . H 3 HOH 51 351 886 HOH HOH B . H 3 HOH 52 352 894 HOH HOH B . H 3 HOH 53 353 896 HOH HOH B . H 3 HOH 54 354 900 HOH HOH B . H 3 HOH 55 355 902 HOH HOH B . H 3 HOH 56 356 904 HOH HOH B . H 3 HOH 57 357 906 HOH HOH B . H 3 HOH 58 358 916 HOH HOH B . H 3 HOH 59 359 922 HOH HOH B . H 3 HOH 60 360 926 HOH HOH B . H 3 HOH 61 361 928 HOH HOH B . H 3 HOH 62 362 930 HOH HOH B . H 3 HOH 63 363 934 HOH HOH B . H 3 HOH 64 364 940 HOH HOH B . H 3 HOH 65 365 944 HOH HOH B . H 3 HOH 66 366 954 HOH HOH B . H 3 HOH 67 367 959 HOH HOH B . H 3 HOH 68 368 965 HOH HOH B . H 3 HOH 69 369 968 HOH HOH B . H 3 HOH 70 370 969 HOH HOH B . H 3 HOH 71 371 972 HOH HOH B . H 3 HOH 72 372 976 HOH HOH B . H 3 HOH 73 373 980 HOH HOH B . H 3 HOH 74 374 983 HOH HOH B . H 3 HOH 75 375 985 HOH HOH B . H 3 HOH 76 376 986 HOH HOH B . I 3 HOH 1 401 710 HOH HOH C . I 3 HOH 2 402 713 HOH HOH C . I 3 HOH 3 403 716 HOH HOH C . I 3 HOH 4 404 717 HOH HOH C . I 3 HOH 5 405 719 HOH HOH C . I 3 HOH 6 406 720 HOH HOH C . I 3 HOH 7 407 721 HOH HOH C . I 3 HOH 8 408 741 HOH HOH C . I 3 HOH 9 409 751 HOH HOH C . I 3 HOH 10 410 752 HOH HOH C . I 3 HOH 11 411 754 HOH HOH C . I 3 HOH 12 412 756 HOH HOH C . I 3 HOH 13 413 758 HOH HOH C . I 3 HOH 14 414 760 HOH HOH C . I 3 HOH 15 415 762 HOH HOH C . I 3 HOH 16 416 763 HOH HOH C . I 3 HOH 17 417 764 HOH HOH C . I 3 HOH 18 418 765 HOH HOH C . I 3 HOH 19 419 766 HOH HOH C . I 3 HOH 20 420 768 HOH HOH C . I 3 HOH 21 421 769 HOH HOH C . I 3 HOH 22 422 776 HOH HOH C . I 3 HOH 23 423 781 HOH HOH C . I 3 HOH 24 424 784 HOH HOH C . I 3 HOH 25 425 789 HOH HOH C . I 3 HOH 26 426 792 HOH HOH C . I 3 HOH 27 427 794 HOH HOH C . I 3 HOH 28 428 795 HOH HOH C . I 3 HOH 29 429 805 HOH HOH C . I 3 HOH 30 430 809 HOH HOH C . I 3 HOH 31 431 812 HOH HOH C . I 3 HOH 32 432 816 HOH HOH C . I 3 HOH 33 433 818 HOH HOH C . I 3 HOH 34 434 820 HOH HOH C . I 3 HOH 35 435 824 HOH HOH C . I 3 HOH 36 436 825 HOH HOH C . I 3 HOH 37 437 829 HOH HOH C . I 3 HOH 38 438 831 HOH HOH C . I 3 HOH 39 439 836 HOH HOH C . I 3 HOH 40 440 842 HOH HOH C . I 3 HOH 41 441 845 HOH HOH C . I 3 HOH 42 442 847 HOH HOH C . I 3 HOH 43 443 848 HOH HOH C . I 3 HOH 44 444 857 HOH HOH C . I 3 HOH 45 445 861 HOH HOH C . I 3 HOH 46 446 862 HOH HOH C . I 3 HOH 47 447 863 HOH HOH C . I 3 HOH 48 448 866 HOH HOH C . I 3 HOH 49 449 872 HOH HOH C . I 3 HOH 50 450 873 HOH HOH C . I 3 HOH 51 451 884 HOH HOH C . I 3 HOH 52 452 890 HOH HOH C . I 3 HOH 53 453 891 HOH HOH C . I 3 HOH 54 454 895 HOH HOH C . I 3 HOH 55 455 897 HOH HOH C . I 3 HOH 56 456 901 HOH HOH C . I 3 HOH 57 457 908 HOH HOH C . I 3 HOH 58 458 911 HOH HOH C . I 3 HOH 59 459 932 HOH HOH C . I 3 HOH 60 460 936 HOH HOH C . I 3 HOH 61 461 938 HOH HOH C . I 3 HOH 62 462 943 HOH HOH C . I 3 HOH 63 463 945 HOH HOH C . I 3 HOH 64 464 946 HOH HOH C . I 3 HOH 65 465 950 HOH HOH C . I 3 HOH 66 466 955 HOH HOH C . I 3 HOH 67 467 957 HOH HOH C . I 3 HOH 68 468 964 HOH HOH C . I 3 HOH 69 469 966 HOH HOH C . I 3 HOH 70 470 971 HOH HOH C . I 3 HOH 71 471 975 HOH HOH C . J 3 HOH 1 501 709 HOH HOH D . J 3 HOH 2 502 711 HOH HOH D . J 3 HOH 3 503 712 HOH HOH D . J 3 HOH 4 504 714 HOH HOH D . J 3 HOH 5 505 715 HOH HOH D . J 3 HOH 6 506 718 HOH HOH D . J 3 HOH 7 507 722 HOH HOH D . J 3 HOH 8 508 723 HOH HOH D . J 3 HOH 9 509 724 HOH HOH D . J 3 HOH 10 510 755 HOH HOH D . J 3 HOH 11 511 757 HOH HOH D . J 3 HOH 12 512 759 HOH HOH D . J 3 HOH 13 513 773 HOH HOH D . J 3 HOH 14 514 780 HOH HOH D . J 3 HOH 15 515 782 HOH HOH D . J 3 HOH 16 516 791 HOH HOH D . J 3 HOH 17 517 793 HOH HOH D . J 3 HOH 18 518 798 HOH HOH D . J 3 HOH 19 519 799 HOH HOH D . J 3 HOH 20 520 800 HOH HOH D . J 3 HOH 21 521 801 HOH HOH D . J 3 HOH 22 522 803 HOH HOH D . J 3 HOH 23 523 804 HOH HOH D . J 3 HOH 24 524 819 HOH HOH D . J 3 HOH 25 525 826 HOH HOH D . J 3 HOH 26 526 830 HOH HOH D . J 3 HOH 27 527 832 HOH HOH D . J 3 HOH 28 528 834 HOH HOH D . J 3 HOH 29 529 838 HOH HOH D . J 3 HOH 30 530 850 HOH HOH D . J 3 HOH 31 531 854 HOH HOH D . J 3 HOH 32 532 856 HOH HOH D . J 3 HOH 33 533 858 HOH HOH D . J 3 HOH 34 534 859 HOH HOH D . J 3 HOH 35 535 874 HOH HOH D . J 3 HOH 36 536 876 HOH HOH D . J 3 HOH 37 537 879 HOH HOH D . J 3 HOH 38 538 893 HOH HOH D . J 3 HOH 39 539 907 HOH HOH D . J 3 HOH 40 540 909 HOH HOH D . J 3 HOH 41 541 910 HOH HOH D . J 3 HOH 42 542 912 HOH HOH D . J 3 HOH 43 543 913 HOH HOH D . J 3 HOH 44 544 915 HOH HOH D . J 3 HOH 45 545 917 HOH HOH D . J 3 HOH 46 546 918 HOH HOH D . J 3 HOH 47 547 919 HOH HOH D . J 3 HOH 48 548 920 HOH HOH D . J 3 HOH 49 549 923 HOH HOH D . J 3 HOH 50 550 927 HOH HOH D . J 3 HOH 51 551 929 HOH HOH D . J 3 HOH 52 552 933 HOH HOH D . J 3 HOH 53 553 939 HOH HOH D . J 3 HOH 54 554 941 HOH HOH D . J 3 HOH 55 555 947 HOH HOH D . J 3 HOH 56 556 948 HOH HOH D . J 3 HOH 57 557 949 HOH HOH D . J 3 HOH 58 558 951 HOH HOH D . J 3 HOH 59 559 952 HOH HOH D . J 3 HOH 60 560 953 HOH HOH D . J 3 HOH 61 561 960 HOH HOH D . J 3 HOH 62 562 963 HOH HOH D . J 3 HOH 63 563 967 HOH HOH D . J 3 HOH 64 564 974 HOH HOH D . J 3 HOH 65 565 977 HOH HOH D . J 3 HOH 66 566 978 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MD2 'data collection' 'diffractometer software from EMBL (with LS-CAT developed extensions' ? 1 Single 'model building' 'wavelength anomalous dispersion' ? 2 SHELXL-97 refinement . ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 Single phasing 'wavelength anomalous dispersion' ? 6 # _cell.entry_id 4O41 _cell.length_a 22.360 _cell.length_b 34.330 _cell.length_c 43.300 _cell.angle_alpha 110.03 _cell.angle_beta 94.24 _cell.angle_gamma 95.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4O41 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4O41 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 35.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;20 mM sodium cacodylate, 45 mM strontium chloride, 10 mM magnesium chloride, 6 mM spermine tetrahydrochloride and 5% 2-methyl-2,4-pentanediol [MPD (v/v)], pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.details ? _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2013-08-17 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7686 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.7686 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.20 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 14.66 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4O41 _reflns.B_iso_Wilson_estimate ? _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I 5.0 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 37491 _reflns.d_resolution_low 28.0 _reflns.pdbx_redundancy 7.7 _reflns.number_obs 35934 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.40 _reflns_shell.percent_possible_all 94.8 _reflns_shell.Rmerge_I_obs 0.296 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.21 _reflns_shell.pdbx_redundancy 7.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 13205 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free ? _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4O41 _refine.aniso_B[2][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML ? _refine.aniso_B[1][3] ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.aniso_B[3][3] ? _refine.solvent_model_param_ksol ? _refine.ls_number_restraints ? _refine.aniso_B[1][1] ? _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs ? _refine.occupancy_min ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct SAD _refine.occupancy_max ? _refine.pdbx_solvent_shrinkage_radii ? _refine.correlation_coeff_Fo_to_Fc ? _refine.ls_number_reflns_R_free 1795 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_ls_sigma_F 3.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_R_work 0.147 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.2 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] ? _refine.B_iso_max ? _refine.pdbx_ls_sigma_I ? _refine.ls_d_res_low 28.0 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details ? _refine.aniso_B[1][2] ? _refine.ls_R_factor_R_free 0.212 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 35886 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ? _refine.ls_number_reflns_all 37491 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1029 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 284 _refine_hist.number_atoms_total 1315 _refine_hist.d_res_high 1.2 _refine_hist.d_res_low 28.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id s_bond_d 0.0180 ? ? ? ? 'X-RAY DIFFRACTION' s_angle_d 0.0327 ? ? ? ? 'X-RAY DIFFRACTION' # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4O41 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.147 _pdbx_refine.free_R_factor_no_cutoff 0.212 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1795 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _database_PDB_matrix.entry_id 4O41 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4O41 _struct.title 'Amide linked RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O41 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Modified RNA, RNA structure, amide RNA, amide internucleoside linkage, modified nucleoside, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4O41 _struct_ref.pdbx_db_accession 4O41 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code 'UGAGC(URU)CGGCUC' _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4O41 A 1 ? 12 ? 4O41 101 ? 113 ? 101 113 2 1 4O41 B 1 ? 12 ? 4O41 201 ? 213 ? 201 213 3 1 4O41 C 1 ? 12 ? 4O41 301 ? 313 ? 301 313 4 1 4O41 D 1 ? 12 ? 4O41 401 ? 413 ? 401 413 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -59 ? 1 'SSA (A^2)' 4880 ? 2 'ABSA (A^2)' 1100 ? 2 MORE -6 ? 2 'SSA (A^2)' 4620 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H 2 1 C,D,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 5 "O3'" ? ? ? 1_555 A URU 6 P ? ? A C 105 A URU 106 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? A URU 6 "OX'" ? ? ? 1_555 A C 7 P ? ? A URU 106 A C 108 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale3 covale both ? B C 5 "O3'" A ? ? 1_555 B URU 6 P A ? B C 205 B URU 206 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale4 covale both ? B C 5 "O3'" B ? ? 1_555 B URU 6 P B ? B C 205 B URU 206 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale5 covale both ? B URU 6 "OX'" ? ? ? 1_555 B C 7 P ? ? B URU 206 B C 208 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale6 covale both ? C C 5 "O3'" ? ? ? 1_555 C URU 6 P ? ? C C 305 C URU 306 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale7 covale both ? C URU 6 "OX'" ? ? ? 1_555 C C 7 P ? ? C URU 306 C C 308 1_555 ? ? ? ? ? ? ? 1.553 ? ? covale8 covale both ? D C 5 "O3'" ? ? ? 1_555 D URU 6 P ? ? D C 405 D URU 406 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale9 covale both ? D URU 6 "OX'" ? ? ? 1_555 D C 7 P ? ? D URU 406 D C 408 1_555 ? ? ? ? ? ? ? 1.555 ? ? metalc1 metalc ? ? A G 9 O6 ? ? ? 1_555 F SR . SR ? ? A G 110 A SR 702 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc2 metalc ? ? A G 9 N7 ? ? ? 1_555 F SR . SR ? ? A G 110 A SR 702 1_555 ? ? ? ? ? ? ? 2.760 ? ? metalc3 metalc ? ? A C 12 "O3'" ? ? ? 1_555 E SR . SR ? ? A C 113 A SR 701 1_555 ? ? ? ? ? ? ? 2.568 ? ? metalc4 metalc ? ? A C 12 "O2'" ? ? ? 1_555 E SR . SR ? ? A C 113 A SR 701 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc5 metalc ? ? E SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 701 A HOH 815 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc6 metalc ? ? E SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 701 A HOH 817 1_555 ? ? ? ? ? ? ? 2.580 ? ? metalc7 metalc ? ? E SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 701 A HOH 840 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc8 metalc ? ? E SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 701 A HOH 866 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc9 metalc ? ? F SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 702 A HOH 805 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc10 metalc ? ? F SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 702 A HOH 811 1_555 ? ? ? ? ? ? ? 2.557 ? ? metalc11 metalc ? ? F SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 702 A HOH 814 1_555 ? ? ? ? ? ? ? 2.518 ? ? metalc12 metalc ? ? F SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 702 A HOH 821 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc13 metalc ? ? F SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 702 A HOH 838 1_555 ? ? ? ? ? ? ? 2.767 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 102 B C 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 102 B C 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 102 B C 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 103 B U 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 103 B U 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 104 B C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 104 B C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 104 B C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 105 B G 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 105 B G 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 105 B G 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 5 N3 A ? A G 110 B C 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 5 O2 A ? A G 110 B C 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 5 N4 A ? A G 110 B C 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 4 N1 A ? A C 111 B G 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 4 O6 A ? A C 111 B G 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 4 N2 A ? A C 111 B G 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 112 B A 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 112 B A 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 113 B G 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 113 B G 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 113 B G 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 302 D C 413 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 302 D C 413 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 302 D C 413 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 11 N3 ? ? C A 303 D U 412 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 11 O4 ? ? C A 303 D U 412 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 304 D C 411 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 304 D C 411 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 304 D C 411 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 9 N1 ? ? C C 305 D G 410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 9 O6 ? ? C C 305 D G 410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 9 N2 ? ? C C 305 D G 410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 9 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 310 D C 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 9 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 310 D C 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 9 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 310 D C 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 311 D G 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 311 D G 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 311 D G 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C U 11 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 312 D A 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C U 11 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 312 D A 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 313 D G 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 313 D G 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 313 D G 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 N7 ? A G 9 ? A G 110 ? 1_555 66.6 ? 2 O6 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 805 ? 1_555 71.1 ? 3 N7 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 805 ? 1_555 99.6 ? 4 O6 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 811 ? 1_555 141.4 ? 5 N7 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 811 ? 1_555 127.9 ? 6 O ? G HOH . ? A HOH 805 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 811 ? 1_555 71.1 ? 7 O6 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 814 ? 1_555 140.0 ? 8 N7 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 814 ? 1_555 75.4 ? 9 O ? G HOH . ? A HOH 805 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 814 ? 1_555 129.5 ? 10 O ? G HOH . ? A HOH 811 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 814 ? 1_555 73.6 ? 11 O6 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 821 ? 1_555 79.3 ? 12 N7 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 821 ? 1_555 73.4 ? 13 O ? G HOH . ? A HOH 805 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 821 ? 1_555 149.8 ? 14 O ? G HOH . ? A HOH 811 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 821 ? 1_555 136.6 ? 15 O ? G HOH . ? A HOH 814 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 821 ? 1_555 78.1 ? 16 O6 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 838 ? 1_555 121.4 ? 17 N7 ? A G 9 ? A G 110 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 838 ? 1_555 126.4 ? 18 O ? G HOH . ? A HOH 805 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 838 ? 1_555 133.9 ? 19 O ? G HOH . ? A HOH 811 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 838 ? 1_555 81.1 ? 20 O ? G HOH . ? A HOH 814 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 838 ? 1_555 72.2 ? 21 O ? G HOH . ? A HOH 821 ? 1_555 SR ? F SR . ? A SR 702 ? 1_555 O ? G HOH . ? A HOH 838 ? 1_555 59.0 ? 22 "O3'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 "O2'" ? A C 12 ? A C 113 ? 1_555 62.2 ? 23 "O3'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 815 ? 1_555 77.9 ? 24 "O2'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 815 ? 1_555 93.7 ? 25 "O3'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 817 ? 1_555 145.1 ? 26 "O2'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 817 ? 1_555 152.1 ? 27 O ? G HOH . ? A HOH 815 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 817 ? 1_555 89.8 ? 28 "O3'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 840 ? 1_555 126.7 ? 29 "O2'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 840 ? 1_555 76.0 ? 30 O ? G HOH . ? A HOH 815 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 840 ? 1_555 73.0 ? 31 O ? G HOH . ? A HOH 817 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 840 ? 1_555 78.6 ? 32 "O3'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 72.2 ? 33 "O2'" ? A C 12 ? A C 113 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 134.2 ? 34 O ? G HOH . ? A HOH 815 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 71.8 ? 35 O ? G HOH . ? A HOH 817 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 72.9 ? 36 O ? G HOH . ? A HOH 840 ? 1_555 SR ? E SR . ? A SR 701 ? 1_555 O ? G HOH . ? A HOH 866 ? 1_555 134.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SR 701 ? 5 'BINDING SITE FOR RESIDUE SR A 701' AC2 Software A SR 702 ? 8 'BINDING SITE FOR RESIDUE SR A 702' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 C A 12 ? C A 113 . ? 1_555 ? 2 AC1 5 HOH G . ? HOH A 815 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH A 817 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 840 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 866 . ? 1_555 ? 6 AC2 8 G A 8 ? G A 109 . ? 1_555 ? 7 AC2 8 G A 9 ? G A 110 . ? 1_555 ? 8 AC2 8 HOH G . ? HOH A 805 . ? 1_555 ? 9 AC2 8 HOH G . ? HOH A 811 . ? 1_555 ? 10 AC2 8 HOH G . ? HOH A 814 . ? 1_555 ? 11 AC2 8 HOH G . ? HOH A 821 . ? 1_555 ? 12 AC2 8 HOH G . ? HOH A 835 . ? 1_555 ? 13 AC2 8 HOH G . ? HOH A 838 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SR _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SR _pdbx_validate_close_contact.auth_seq_id_1 702 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 835 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" B G 204 ? B N9 B G 204 ? B 1.997 1.483 0.514 0.015 N 2 1 "C2'" B G 204 ? A "O2'" B G 204 ? A 1.208 1.412 -0.204 0.013 N 3 1 "C2'" B G 204 ? B "O2'" B G 204 ? B 1.619 1.420 0.199 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B U 201 ? ? "C2'" B U 201 ? ? "C1'" B U 201 ? ? 96.77 101.30 -4.53 0.70 N 2 1 C2 B U 201 ? ? N3 B U 201 ? ? C4 B U 201 ? ? 122.97 127.00 -4.03 0.60 N 3 1 N3 B U 201 ? ? C4 B U 201 ? ? O4 B U 201 ? ? 124.17 119.40 4.77 0.70 N 4 1 C5 B U 201 ? ? C4 B U 201 ? ? O4 B U 201 ? ? 120.28 125.90 -5.62 0.60 N 5 1 "C3'" B G 204 ? A "C2'" B G 204 ? A "C1'" B G 204 ? A 94.14 101.30 -7.16 0.70 N 6 1 N9 B G 204 ? B "C1'" B G 204 ? B "C2'" B G 204 ? B 105.34 112.00 -6.66 1.10 N 7 1 "O4'" B G 204 ? B "C1'" B G 204 ? B N9 B G 204 ? B 90.81 108.20 -17.39 0.80 N 8 1 C2 B G 209 ? ? N3 B G 209 ? ? C4 B G 209 ? ? 115.68 111.90 3.78 0.50 N 9 1 N1 C G 302 ? ? C6 C G 302 ? ? O6 C G 302 ? ? 116.02 119.90 -3.88 0.60 N 10 1 C6 D G 409 ? ? N1 D G 409 ? ? C2 D G 409 ? ? 120.61 125.10 -4.49 0.60 N 11 1 C2 D G 409 ? ? N3 D G 409 ? ? C4 D G 409 ? ? 116.09 111.90 4.19 0.50 N 12 1 C5 D G 409 ? ? C6 D G 409 ? ? N1 D G 409 ? ? 115.13 111.50 3.63 0.50 N 13 1 C5 D G 409 ? ? N7 D G 409 ? ? C8 D G 409 ? ? 107.65 104.30 3.35 0.50 N 14 1 C2 D U 412 ? ? N3 D U 412 ? ? C4 D U 412 ? ? 130.75 127.00 3.75 0.60 N # _pdbx_entry_details.entry_id 4O41 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details 'URU represents the amide linked residue' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 101 ? A U 1 2 1 Y 1 C U 301 ? C U 1 3 1 Y 1 D U 401 ? D U 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 SR SR SR N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 URU P P N N 149 URU OP1 O N N 150 URU "O5'" O N N 151 URU "C5'" C N N 152 URU "C4'" C N S 153 URU "C3'" C N S 154 URU "C6'" C N N 155 URU "C2'" C N R 156 URU "O2'" O N N 157 URU "C1'" C N R 158 URU "O4'" O N N 159 URU N1 N N N 160 URU C6 C N N 161 URU C5 C N N 162 URU C4 C N N 163 URU N3 N N N 164 URU C2 C N N 165 URU O2 O N N 166 URU O4 O N N 167 URU OP2 O N N 168 URU C C N N 169 URU O3 O N N 170 URU "NZ'" N N N 171 URU "CZ'" C N N 172 URU "CY'" C N R 173 URU "CX'" C N S 174 URU "OX'" O N N 175 URU "CW'" C N R 176 URU "OW'" O N N 177 URU "CV'" C N R 178 URU "OY'" O N N 179 URU N11 N N N 180 URU C16 C N N 181 URU C15 C N N 182 URU C14 C N N 183 URU N13 N N N 184 URU C12 C N N 185 URU O12 O N N 186 URU O14 O N N 187 URU H2 H N N 188 URU H3 H N N 189 URU H4 H N N 190 URU H5 H N N 191 URU H6 H N N 192 URU H7 H N N 193 URU H8 H N N 194 URU H9 H N N 195 URU H10 H N N 196 URU H11 H N N 197 URU H12 H N N 198 URU H13 H N N 199 URU H14 H N N 200 URU H15 H N N 201 URU H16 H N N 202 URU H17 H N N 203 URU H18 H N N 204 URU H19 H N N 205 URU H20 H N N 206 URU H21 H N N 207 URU H22 H N N 208 URU H23 H N N 209 URU H24 H N N 210 URU H25 H N N 211 URU H26 H N N 212 URU OP3 O N N 213 URU H1 H N N 214 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 URU "C5'" "C4'" sing N N 153 URU "C5'" "O5'" sing N N 154 URU OP1 P doub N N 155 URU "C4'" "O4'" sing N N 156 URU "C4'" "C3'" sing N N 157 URU P "O5'" sing N N 158 URU P OP2 sing N N 159 URU "O4'" "C1'" sing N N 160 URU "C6'" "C3'" sing N N 161 URU "C6'" C sing N N 162 URU "O2'" "C2'" sing N N 163 URU "C3'" "C2'" sing N N 164 URU "C1'" "C2'" sing N N 165 URU "C1'" N1 sing N N 166 URU "NZ'" C sing N N 167 URU "NZ'" "CZ'" sing N N 168 URU C O3 doub N N 169 URU "CZ'" "CY'" sing N N 170 URU "CY'" "OY'" sing N N 171 URU "CY'" "CX'" sing N N 172 URU "OY'" "CV'" sing N N 173 URU N1 C6 sing N N 174 URU N1 C2 sing N N 175 URU C6 C5 doub N N 176 URU "OW'" "CW'" sing N N 177 URU "CV'" "CW'" sing N N 178 URU "CV'" N11 sing N N 179 URU O2 C2 doub N N 180 URU C2 N3 sing N N 181 URU "OX'" "CX'" sing N N 182 URU "CX'" "CW'" sing N N 183 URU C5 C4 sing N N 184 URU N11 C16 sing N N 185 URU N11 C12 sing N N 186 URU C16 C15 doub N N 187 URU N3 C4 sing N N 188 URU C4 O4 doub N N 189 URU O12 C12 doub N N 190 URU C12 N13 sing N N 191 URU C15 C14 sing N N 192 URU N13 C14 sing N N 193 URU C14 O14 doub N N 194 URU "C5'" H2 sing N N 195 URU "C5'" H3 sing N N 196 URU "C4'" H4 sing N N 197 URU "C3'" H5 sing N N 198 URU "C6'" H6 sing N N 199 URU "C6'" H7 sing N N 200 URU "C2'" H8 sing N N 201 URU "O2'" H9 sing N N 202 URU "C1'" H10 sing N N 203 URU C6 H11 sing N N 204 URU C5 H12 sing N N 205 URU N3 H13 sing N N 206 URU OP2 H14 sing N N 207 URU "NZ'" H15 sing N N 208 URU "CZ'" H16 sing N N 209 URU "CZ'" H17 sing N N 210 URU "CY'" H18 sing N N 211 URU "CX'" H19 sing N N 212 URU "OX'" H20 sing N N 213 URU "CW'" H21 sing N N 214 URU "OW'" H22 sing N N 215 URU "CV'" H23 sing N N 216 URU C16 H24 sing N N 217 URU C15 H25 sing N N 218 URU N13 H26 sing N N 219 URU P OP3 sing N N 220 URU OP3 H1 sing N N 221 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4O41 'a-form double helix' 4O41 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 12 1_555 -0.375 -0.093 -0.051 -7.098 -6.380 0.544 1 A_G102:C213_B A 102 ? B 213 ? 19 1 1 A A 3 1_555 B U 11 1_555 0.024 -0.137 0.136 1.387 -10.816 2.353 2 A_A103:U212_B A 103 ? B 212 ? 20 1 1 A G 4 1_555 B C 10 1_555 -0.191 -0.138 -0.006 -0.209 -14.206 0.157 3 A_G104:C211_B A 104 ? B 211 ? 19 1 1 A C 5 1_555 B G 9 1_555 0.204 -0.149 -0.021 3.205 -14.421 0.403 4 A_C105:G210_B A 105 ? B 210 ? 19 1 1 A G 9 1_555 B C 5 1_555 -0.089 -0.324 -0.066 -2.182 -17.311 5.113 5 A_G110:C205_B A 110 ? B 205 ? 19 1 1 A C 10 1_555 B G 4 1_555 0.343 -0.048 0.173 3.491 -14.810 0.142 6 A_C111:G204_B A 111 ? B 204 ? 19 1 1 A U 11 1_555 B A 3 1_555 0.004 -0.186 0.038 -3.274 -9.486 0.559 7 A_U112:A203_B A 112 ? B 203 ? 20 1 1 A C 12 1_555 B G 2 1_555 0.281 -0.123 -0.096 5.442 -3.945 0.068 8 A_C113:G202_B A 113 ? B 202 ? 19 1 1 C G 2 1_555 D C 12 1_555 -0.248 -0.073 0.013 -4.846 -6.036 1.239 9 C_G302:C413_D C 302 ? D 413 ? 19 1 1 C A 3 1_555 D U 11 1_555 -0.023 -0.179 0.171 3.110 -10.896 2.904 10 C_A303:U412_D C 303 ? D 412 ? 20 1 1 C G 4 1_555 D C 10 1_555 -0.105 -0.174 -0.064 -1.640 -13.135 -0.240 11 C_G304:C411_D C 304 ? D 411 ? 19 1 1 C C 5 1_555 D G 9 1_555 0.247 -0.204 0.043 -0.234 -14.613 0.403 12 C_C305:G410_D C 305 ? D 410 ? 19 1 1 C G 9 1_555 D C 5 1_555 -0.226 -0.143 0.027 -2.165 -14.034 1.312 13 C_G310:C405_D C 310 ? D 405 ? 19 1 1 C C 10 1_555 D G 4 1_555 0.182 -0.157 0.132 -1.741 -11.876 -0.508 14 C_C311:G404_D C 311 ? D 404 ? 19 1 1 C U 11 1_555 D A 3 1_555 0.149 -0.101 0.078 -4.387 -9.588 -1.069 15 C_U312:A403_D C 312 ? D 403 ? 20 1 1 C C 12 1_555 D G 2 1_555 0.331 -0.100 0.099 3.751 -4.389 1.201 16 C_C313:G402_D C 313 ? D 402 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 12 1_555 A A 3 1_555 B U 11 1_555 -0.204 -1.542 3.096 -1.831 1.592 31.719 -3.086 0.058 3.023 2.908 3.343 31.810 1 AA_G102A103:U212C213_BB A 102 ? B 213 ? A 103 ? B 212 ? 1 A A 3 1_555 B U 11 1_555 A G 4 1_555 B C 10 1_555 -0.216 -1.634 3.226 -0.163 7.924 30.806 -4.327 0.367 2.733 14.614 0.301 31.786 2 AA_A103G104:C211U212_BB A 103 ? B 212 ? A 104 ? B 211 ? 1 A G 4 1_555 B C 10 1_555 A C 5 1_555 B G 9 1_555 -0.013 -1.450 3.189 0.297 4.915 33.498 -3.238 0.067 2.952 8.470 -0.512 33.847 3 AA_G104C105:G210C211_BB A 104 ? B 211 ? A 105 ? B 210 ? 1 A G 9 1_555 B C 5 1_555 A C 10 1_555 B G 4 1_555 -1.020 -2.407 2.938 -5.010 3.222 33.212 -4.613 1.036 2.819 5.582 8.679 33.727 4 AA_G110C111:G204C205_BB A 110 ? B 205 ? A 111 ? B 204 ? 1 A C 10 1_555 B G 4 1_555 A U 11 1_555 B A 3 1_555 -0.190 -1.592 3.391 0.096 7.629 30.221 -4.390 0.372 2.911 14.347 -0.180 31.148 5 AA_C111U112:A203G204_BB A 111 ? B 204 ? A 112 ? B 203 ? 1 A U 11 1_555 B A 3 1_555 A C 12 1_555 B G 2 1_555 0.552 -1.571 3.057 1.355 2.435 32.664 -3.169 -0.763 2.955 4.319 -2.403 32.780 6 AA_U112C113:G202A203_BB A 112 ? B 203 ? A 113 ? B 202 ? 1 C G 2 1_555 D C 12 1_555 C A 3 1_555 D U 11 1_555 -0.213 -1.715 3.062 -1.184 3.062 30.295 -3.820 0.190 2.885 5.837 2.257 30.468 7 CC_G302A303:U412C413_DD C 302 ? D 413 ? C 303 ? D 412 ? 1 C A 3 1_555 D U 11 1_555 C G 4 1_555 D C 10 1_555 -0.234 -1.574 3.321 0.894 6.354 32.305 -3.828 0.561 2.959 11.280 -1.587 32.919 8 CC_A303G304:C411U412_DD C 303 ? D 412 ? C 304 ? D 411 ? 1 C G 4 1_555 D C 10 1_555 C C 5 1_555 D G 9 1_555 0.325 -1.469 3.186 -0.359 5.093 33.962 -3.239 -0.603 2.938 8.658 0.611 34.333 9 CC_G304C305:G410C411_DD C 304 ? D 411 ? C 305 ? D 410 ? 1 C G 9 1_555 D C 5 1_555 C C 10 1_555 D G 4 1_555 -0.448 -1.821 3.222 -1.901 3.475 33.042 -3.738 0.478 3.040 6.082 3.327 33.272 10 CC_G310C311:G404C405_DD C 310 ? D 405 ? C 311 ? D 404 ? 1 C C 10 1_555 D G 4 1_555 C U 11 1_555 D A 3 1_555 -0.346 -1.452 3.246 0.203 7.376 31.469 -3.842 0.655 2.839 13.371 -0.368 32.301 11 CC_C311U312:A403G404_DD C 311 ? D 404 ? C 312 ? D 403 ? 1 C U 11 1_555 D A 3 1_555 C C 12 1_555 D G 2 1_555 0.588 -1.608 3.046 0.457 2.464 32.506 -3.256 -0.974 2.928 4.393 -0.816 32.600 12 CC_U312C313:G402A403_DD C 312 ? D 403 ? C 313 ? D 402 ? # _atom_sites.entry_id 4O41 _atom_sites.fract_transf_matrix[1][1] 0.044723 _atom_sites.fract_transf_matrix[1][2] 0.004566 _atom_sites.fract_transf_matrix[1][3] 0.005265 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029280 _atom_sites.fract_transf_matrix[2][3] 0.011040 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024750 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P SR # loop_