data_4O9W # _entry.id 4O9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4O9W RCSB RCSB084225 WWPDB D_1000084225 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4O9W _pdbx_database_status.recvd_initial_deposition_date 2014-01-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bong, S.M.' 1 'Lee, B.I.' 2 'Kim, K.T.' 3 # _citation.id primary _citation.title ;The condensin component NCAPG2 regulates microtubule-kinetochore attachment through recruitment of Polo-like kinase 1 to kinetochores. ; _citation.journal_abbrev 'Nat Commun' _citation.journal_volume 5 _citation.page_first 4588 _citation.page_last 4588 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25109385 _citation.pdbx_database_id_DOI 10.1038/ncomms5588 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, J.H.' 1 ? primary 'Shim, J.' 2 ? primary 'Ji, M.J.' 3 ? primary 'Jung, Y.' 4 ? primary 'Bong, S.M.' 5 ? primary 'Jang, Y.J.' 6 ? primary 'Yoon, E.K.' 7 ? primary 'Lee, S.J.' 8 ? primary 'Kim, K.G.' 9 ? primary 'Kim, Y.H.' 10 ? primary 'Lee, C.' 11 ? primary 'Lee, B.I.' 12 ? primary 'Kim, K.T.' 13 ? # _cell.entry_id 4O9W _cell.length_a 35.649 _cell.length_b 51.858 _cell.length_c 57.654 _cell.angle_alpha 90.00 _cell.angle_beta 100.69 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4O9W _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase PLK1' 25752.426 1 2.7.11.21 ? 'UNP RESIDUES 373-594' ? 2 polymer syn 'phospho peptide VAL-LEU-SER-TPO-LEU-NH2' 609.631 1 ? ? ? ? 3 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polo-like kinase 1, PLK-1, Serine/threonine-protein kinase 13, STPK13' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQ YIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQI NFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR ; ;HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQ YIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQI NFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR ; A ? 2 'polypeptide(L)' no yes 'VLS(TPO)L(NH2)' VLSTLX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 LEU n 1 3 SER n 1 4 ASP n 1 5 MET n 1 6 LEU n 1 7 GLN n 1 8 GLN n 1 9 LEU n 1 10 HIS n 1 11 SER n 1 12 VAL n 1 13 ASN n 1 14 ALA n 1 15 SER n 1 16 LYS n 1 17 PRO n 1 18 SER n 1 19 GLU n 1 20 ARG n 1 21 GLY n 1 22 LEU n 1 23 VAL n 1 24 ARG n 1 25 GLN n 1 26 GLU n 1 27 GLU n 1 28 ALA n 1 29 GLU n 1 30 ASP n 1 31 PRO n 1 32 ALA n 1 33 CYS n 1 34 ILE n 1 35 PRO n 1 36 ILE n 1 37 PHE n 1 38 TRP n 1 39 VAL n 1 40 SER n 1 41 LYS n 1 42 TRP n 1 43 VAL n 1 44 ASP n 1 45 TYR n 1 46 SER n 1 47 ASP n 1 48 LYS n 1 49 TYR n 1 50 GLY n 1 51 LEU n 1 52 GLY n 1 53 TYR n 1 54 GLN n 1 55 LEU n 1 56 CYS n 1 57 ASP n 1 58 ASN n 1 59 SER n 1 60 VAL n 1 61 GLY n 1 62 VAL n 1 63 LEU n 1 64 PHE n 1 65 ASN n 1 66 ASP n 1 67 SER n 1 68 THR n 1 69 ARG n 1 70 LEU n 1 71 ILE n 1 72 LEU n 1 73 TYR n 1 74 ASN n 1 75 ASP n 1 76 GLY n 1 77 ASP n 1 78 SER n 1 79 LEU n 1 80 GLN n 1 81 TYR n 1 82 ILE n 1 83 GLU n 1 84 ARG n 1 85 ASP n 1 86 GLY n 1 87 THR n 1 88 GLU n 1 89 SER n 1 90 TYR n 1 91 LEU n 1 92 THR n 1 93 VAL n 1 94 SER n 1 95 SER n 1 96 HIS n 1 97 PRO n 1 98 ASN n 1 99 SER n 1 100 LEU n 1 101 MET n 1 102 LYS n 1 103 LYS n 1 104 ILE n 1 105 THR n 1 106 LEU n 1 107 LEU n 1 108 LYS n 1 109 TYR n 1 110 PHE n 1 111 ARG n 1 112 ASN n 1 113 TYR n 1 114 MET n 1 115 SER n 1 116 GLU n 1 117 HIS n 1 118 LEU n 1 119 LEU n 1 120 LYS n 1 121 ALA n 1 122 GLY n 1 123 ALA n 1 124 ASN n 1 125 ILE n 1 126 THR n 1 127 PRO n 1 128 ARG n 1 129 GLU n 1 130 GLY n 1 131 ASP n 1 132 GLU n 1 133 LEU n 1 134 ALA n 1 135 ARG n 1 136 LEU n 1 137 PRO n 1 138 TYR n 1 139 LEU n 1 140 ARG n 1 141 THR n 1 142 TRP n 1 143 PHE n 1 144 ARG n 1 145 THR n 1 146 ARG n 1 147 SER n 1 148 ALA n 1 149 ILE n 1 150 ILE n 1 151 LEU n 1 152 HIS n 1 153 LEU n 1 154 SER n 1 155 ASN n 1 156 GLY n 1 157 SER n 1 158 VAL n 1 159 GLN n 1 160 ILE n 1 161 ASN n 1 162 PHE n 1 163 PHE n 1 164 GLN n 1 165 ASP n 1 166 HIS n 1 167 THR n 1 168 LYS n 1 169 LEU n 1 170 ILE n 1 171 LEU n 1 172 CYS n 1 173 PRO n 1 174 LEU n 1 175 MET n 1 176 ALA n 1 177 ALA n 1 178 VAL n 1 179 THR n 1 180 TYR n 1 181 ILE n 1 182 ASP n 1 183 GLU n 1 184 LYS n 1 185 ARG n 1 186 ASP n 1 187 PHE n 1 188 ARG n 1 189 THR n 1 190 TYR n 1 191 ARG n 1 192 LEU n 1 193 SER n 1 194 LEU n 1 195 LEU n 1 196 GLU n 1 197 GLU n 1 198 TYR n 1 199 GLY n 1 200 CYS n 1 201 CYS n 1 202 LYS n 1 203 GLU n 1 204 LEU n 1 205 ALA n 1 206 SER n 1 207 ARG n 1 208 LEU n 1 209 ARG n 1 210 TYR n 1 211 ALA n 1 212 ARG n 1 213 THR n 1 214 MET n 1 215 VAL n 1 216 ASP n 1 217 LYS n 1 218 LEU n 1 219 LEU n 1 220 SER n 1 221 SER n 1 222 ARG n 2 1 VAL n 2 2 LEU n 2 3 SER n 2 4 TPO n 2 5 LEU n 2 6 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PLK1, PLK' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'The peptide was chemically synthesized.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PLK1_HUMAN P53350 1 ;HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQ YIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQI NFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR ; 373 ? 2 PDB 4O9W 4O9W 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4O9W A 1 ? 222 ? P53350 373 ? 594 ? 373 594 2 2 4O9W B 1 ? 6 ? 4O9W 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4O9W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_percent_sol 38.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '200mM potassium iodide, 100mM MES, 25% PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 5C (4A)' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline '5C (4A)' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4O9W _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.694 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4O9W _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21771 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.028 _refine.ls_d_res_high 1.694 _refine.ls_percent_reflns_obs 94.27 _refine.ls_R_factor_obs 0.2032 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2013 _refine.ls_R_factor_R_free 0.2397 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.08 _refine.ls_number_reflns_R_free 1107 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 25.83 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1763 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 1825 _refine_hist.d_res_high 1.694 _refine_hist.d_res_low 29.028 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1797 'X-RAY DIFFRACTION' ? f_angle_d 1.110 ? ? 2430 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.043 ? ? 667 'X-RAY DIFFRACTION' ? f_chiral_restr 0.077 ? ? 274 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 303 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.6940 1.7711 1869 0.2396 69.00 0.3348 . . 98 . . . . 'X-RAY DIFFRACTION' . 1.7711 1.8644 2581 0.2152 95.00 0.2632 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.8644 1.9812 2691 0.2006 98.00 0.2339 . . 134 . . . . 'X-RAY DIFFRACTION' . 1.9812 2.1341 2680 0.1901 99.00 0.2491 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.1341 2.3488 2719 0.1899 99.00 0.2295 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.3488 2.6885 2732 0.2120 99.00 0.2567 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.6885 3.3864 2732 0.2111 99.00 0.2310 . . 154 . . . . 'X-RAY DIFFRACTION' . 3.3864 29.0324 2660 0.1937 95.00 0.2329 . . 154 . . . . # _struct.entry_id 4O9W _struct.title 'Crystal structure of polo-like kinase(PLK1)PBD in complex with phospho peptide' _struct.pdbx_descriptor 'Serine/threonine-protein kinase PLK1 (E.C.2.7.11.21), phospho peptide VAL-LEU-SER-TPO-LEU-NH2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O9W _struct_keywords.pdbx_keywords TRANSFERASE/PEPTIDE _struct_keywords.text 'polo-box domain, TRANSFERASE-PEPTIDE complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 1 ? SER A 15 ? HIS A 373 SER A 387 1 ? 15 HELX_P HELX_P2 2 ARG A 24 ? GLU A 29 ? ARG A 396 GLU A 401 5 ? 6 HELX_P HELX_P3 3 ASP A 30 ? ILE A 34 ? ASP A 402 ILE A 406 5 ? 5 HELX_P HELX_P4 4 PRO A 97 ? SER A 99 ? PRO A 469 SER A 471 5 ? 3 HELX_P HELX_P5 5 LEU A 100 ? LEU A 118 ? LEU A 472 LEU A 490 1 ? 19 HELX_P HELX_P6 6 LEU A 192 ? GLY A 199 ? LEU A 564 GLY A 571 1 ? 8 HELX_P HELX_P7 7 CYS A 201 ? SER A 221 ? CYS A 573 SER A 593 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? B SER 3 C ? ? ? 1_555 B TPO 4 N ? ? B SER 3 B TPO 4 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale both ? B TPO 4 C ? ? ? 1_555 B LEU 5 N ? ? B TPO 4 B LEU 5 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale both ? B LEU 5 C ? ? ? 1_555 B NH2 6 N ? ? B LEU 5 B NH2 6 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 39 ? ASP A 44 ? VAL A 411 ASP A 416 A 2 GLY A 50 ? LEU A 55 ? GLY A 422 LEU A 427 A 3 VAL A 60 ? PHE A 64 ? VAL A 432 PHE A 436 A 4 ARG A 69 ? LEU A 72 ? ARG A 441 LEU A 444 A 5 SER A 78 ? ILE A 82 ? SER A 450 ILE A 454 A 6 GLU A 88 ? THR A 92 ? GLU A 460 THR A 464 B 1 LEU A 139 ? ARG A 144 ? LEU A 511 ARG A 516 B 2 ALA A 148 ? LEU A 153 ? ALA A 520 LEU A 525 B 3 VAL A 158 ? PHE A 162 ? VAL A 530 PHE A 534 B 4 LYS A 168 ? CYS A 172 ? LYS A 540 CYS A 544 B 5 ALA A 177 ? ILE A 181 ? ALA A 549 ILE A 553 B 6 PHE A 187 ? ARG A 191 ? PHE A 559 ARG A 563 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 43 ? N VAL A 415 O GLY A 52 ? O GLY A 424 A 2 3 N TYR A 53 ? N TYR A 425 O GLY A 61 ? O GLY A 433 A 3 4 N VAL A 60 ? N VAL A 432 O LEU A 72 ? O LEU A 444 A 4 5 N ARG A 69 ? N ARG A 441 O ILE A 82 ? O ILE A 454 A 5 6 N LEU A 79 ? N LEU A 451 O LEU A 91 ? O LEU A 463 B 1 2 N PHE A 143 ? N PHE A 515 O ILE A 150 ? O ILE A 522 B 2 3 N LEU A 151 ? N LEU A 523 O GLN A 159 ? O GLN A 531 B 3 4 N VAL A 158 ? N VAL A 530 O LEU A 171 ? O LEU A 543 B 4 5 N CYS A 172 ? N CYS A 544 O ALA A 177 ? O ALA A 549 B 5 6 N VAL A 178 ? N VAL A 550 O TYR A 190 ? O TYR A 562 # _database_PDB_matrix.entry_id 4O9W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4O9W _atom_sites.fract_transf_matrix[1][1] 0.028051 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005295 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019283 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017651 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 373 373 HIS HIS A . n A 1 2 LEU 2 374 374 LEU LEU A . n A 1 3 SER 3 375 375 SER SER A . n A 1 4 ASP 4 376 376 ASP ASP A . n A 1 5 MET 5 377 377 MET MET A . n A 1 6 LEU 6 378 378 LEU LEU A . n A 1 7 GLN 7 379 379 GLN GLN A . n A 1 8 GLN 8 380 380 GLN GLN A . n A 1 9 LEU 9 381 381 LEU LEU A . n A 1 10 HIS 10 382 382 HIS HIS A . n A 1 11 SER 11 383 383 SER SER A . n A 1 12 VAL 12 384 384 VAL VAL A . n A 1 13 ASN 13 385 385 ASN ASN A . n A 1 14 ALA 14 386 386 ALA ALA A . n A 1 15 SER 15 387 387 SER SER A . n A 1 16 LYS 16 388 388 LYS LYS A . n A 1 17 PRO 17 389 389 PRO PRO A . n A 1 18 SER 18 390 390 SER SER A . n A 1 19 GLU 19 391 391 GLU GLU A . n A 1 20 ARG 20 392 ? ? ? A . n A 1 21 GLY 21 393 ? ? ? A . n A 1 22 LEU 22 394 394 LEU LEU A . n A 1 23 VAL 23 395 395 VAL VAL A . n A 1 24 ARG 24 396 396 ARG ARG A . n A 1 25 GLN 25 397 397 GLN GLN A . n A 1 26 GLU 26 398 398 GLU GLU A . n A 1 27 GLU 27 399 399 GLU GLU A . n A 1 28 ALA 28 400 400 ALA ALA A . n A 1 29 GLU 29 401 401 GLU GLU A . n A 1 30 ASP 30 402 402 ASP ASP A . n A 1 31 PRO 31 403 403 PRO PRO A . n A 1 32 ALA 32 404 404 ALA ALA A . n A 1 33 CYS 33 405 405 CYS CYS A . n A 1 34 ILE 34 406 406 ILE ILE A . n A 1 35 PRO 35 407 407 PRO PRO A . n A 1 36 ILE 36 408 408 ILE ILE A . n A 1 37 PHE 37 409 409 PHE PHE A . n A 1 38 TRP 38 410 410 TRP TRP A . n A 1 39 VAL 39 411 411 VAL VAL A . n A 1 40 SER 40 412 412 SER SER A . n A 1 41 LYS 41 413 413 LYS LYS A . n A 1 42 TRP 42 414 414 TRP TRP A . n A 1 43 VAL 43 415 415 VAL VAL A . n A 1 44 ASP 44 416 416 ASP ASP A . n A 1 45 TYR 45 417 417 TYR TYR A . n A 1 46 SER 46 418 418 SER SER A . n A 1 47 ASP 47 419 419 ASP ASP A . n A 1 48 LYS 48 420 420 LYS LYS A . n A 1 49 TYR 49 421 421 TYR TYR A . n A 1 50 GLY 50 422 422 GLY GLY A . n A 1 51 LEU 51 423 423 LEU LEU A . n A 1 52 GLY 52 424 424 GLY GLY A . n A 1 53 TYR 53 425 425 TYR TYR A . n A 1 54 GLN 54 426 426 GLN GLN A . n A 1 55 LEU 55 427 427 LEU LEU A . n A 1 56 CYS 56 428 428 CYS CYS A . n A 1 57 ASP 57 429 429 ASP ASP A . n A 1 58 ASN 58 430 430 ASN ASN A . n A 1 59 SER 59 431 431 SER SER A . n A 1 60 VAL 60 432 432 VAL VAL A . n A 1 61 GLY 61 433 433 GLY GLY A . n A 1 62 VAL 62 434 434 VAL VAL A . n A 1 63 LEU 63 435 435 LEU LEU A . n A 1 64 PHE 64 436 436 PHE PHE A . n A 1 65 ASN 65 437 437 ASN ASN A . n A 1 66 ASP 66 438 438 ASP ASP A . n A 1 67 SER 67 439 439 SER SER A . n A 1 68 THR 68 440 440 THR THR A . n A 1 69 ARG 69 441 441 ARG ARG A . n A 1 70 LEU 70 442 442 LEU LEU A . n A 1 71 ILE 71 443 443 ILE ILE A . n A 1 72 LEU 72 444 444 LEU LEU A . n A 1 73 TYR 73 445 445 TYR TYR A . n A 1 74 ASN 74 446 446 ASN ASN A . n A 1 75 ASP 75 447 447 ASP ASP A . n A 1 76 GLY 76 448 448 GLY GLY A . n A 1 77 ASP 77 449 449 ASP ASP A . n A 1 78 SER 78 450 450 SER SER A . n A 1 79 LEU 79 451 451 LEU LEU A . n A 1 80 GLN 80 452 452 GLN GLN A . n A 1 81 TYR 81 453 453 TYR TYR A . n A 1 82 ILE 82 454 454 ILE ILE A . n A 1 83 GLU 83 455 455 GLU GLU A . n A 1 84 ARG 84 456 456 ARG ARG A . n A 1 85 ASP 85 457 457 ASP ASP A . n A 1 86 GLY 86 458 458 GLY GLY A . n A 1 87 THR 87 459 459 THR THR A . n A 1 88 GLU 88 460 460 GLU GLU A . n A 1 89 SER 89 461 461 SER SER A . n A 1 90 TYR 90 462 462 TYR TYR A . n A 1 91 LEU 91 463 463 LEU LEU A . n A 1 92 THR 92 464 464 THR THR A . n A 1 93 VAL 93 465 465 VAL VAL A . n A 1 94 SER 94 466 466 SER SER A . n A 1 95 SER 95 467 467 SER SER A . n A 1 96 HIS 96 468 468 HIS HIS A . n A 1 97 PRO 97 469 469 PRO PRO A . n A 1 98 ASN 98 470 470 ASN ASN A . n A 1 99 SER 99 471 471 SER SER A . n A 1 100 LEU 100 472 472 LEU LEU A . n A 1 101 MET 101 473 473 MET MET A . n A 1 102 LYS 102 474 474 LYS LYS A . n A 1 103 LYS 103 475 475 LYS LYS A . n A 1 104 ILE 104 476 476 ILE ILE A . n A 1 105 THR 105 477 477 THR THR A . n A 1 106 LEU 106 478 478 LEU LEU A . n A 1 107 LEU 107 479 479 LEU LEU A . n A 1 108 LYS 108 480 480 LYS LYS A . n A 1 109 TYR 109 481 481 TYR TYR A . n A 1 110 PHE 110 482 482 PHE PHE A . n A 1 111 ARG 111 483 483 ARG ARG A . n A 1 112 ASN 112 484 484 ASN ASN A . n A 1 113 TYR 113 485 485 TYR TYR A . n A 1 114 MET 114 486 486 MET MET A . n A 1 115 SER 115 487 487 SER SER A . n A 1 116 GLU 116 488 488 GLU GLU A . n A 1 117 HIS 117 489 489 HIS HIS A . n A 1 118 LEU 118 490 490 LEU LEU A . n A 1 119 LEU 119 491 491 LEU LEU A . n A 1 120 LYS 120 492 492 LYS LYS A . n A 1 121 ALA 121 493 493 ALA ALA A . n A 1 122 GLY 122 494 494 GLY GLY A . n A 1 123 ALA 123 495 495 ALA ALA A . n A 1 124 ASN 124 496 496 ASN ASN A . n A 1 125 ILE 125 497 497 ILE ILE A . n A 1 126 THR 126 498 498 THR THR A . n A 1 127 PRO 127 499 ? ? ? A . n A 1 128 ARG 128 500 ? ? ? A . n A 1 129 GLU 129 501 ? ? ? A . n A 1 130 GLY 130 502 ? ? ? A . n A 1 131 ASP 131 503 ? ? ? A . n A 1 132 GLU 132 504 ? ? ? A . n A 1 133 LEU 133 505 ? ? ? A . n A 1 134 ALA 134 506 ? ? ? A . n A 1 135 ARG 135 507 ? ? ? A . n A 1 136 LEU 136 508 508 LEU LEU A . n A 1 137 PRO 137 509 509 PRO PRO A . n A 1 138 TYR 138 510 510 TYR TYR A . n A 1 139 LEU 139 511 511 LEU LEU A . n A 1 140 ARG 140 512 512 ARG ARG A . n A 1 141 THR 141 513 513 THR THR A . n A 1 142 TRP 142 514 514 TRP TRP A . n A 1 143 PHE 143 515 515 PHE PHE A . n A 1 144 ARG 144 516 516 ARG ARG A . n A 1 145 THR 145 517 517 THR THR A . n A 1 146 ARG 146 518 518 ARG ARG A . n A 1 147 SER 147 519 519 SER SER A . n A 1 148 ALA 148 520 520 ALA ALA A . n A 1 149 ILE 149 521 521 ILE ILE A . n A 1 150 ILE 150 522 522 ILE ILE A . n A 1 151 LEU 151 523 523 LEU LEU A . n A 1 152 HIS 152 524 524 HIS HIS A . n A 1 153 LEU 153 525 525 LEU LEU A . n A 1 154 SER 154 526 526 SER SER A . n A 1 155 ASN 155 527 527 ASN ASN A . n A 1 156 GLY 156 528 528 GLY GLY A . n A 1 157 SER 157 529 529 SER SER A . n A 1 158 VAL 158 530 530 VAL VAL A . n A 1 159 GLN 159 531 531 GLN GLN A . n A 1 160 ILE 160 532 532 ILE ILE A . n A 1 161 ASN 161 533 533 ASN ASN A . n A 1 162 PHE 162 534 534 PHE PHE A . n A 1 163 PHE 163 535 535 PHE PHE A . n A 1 164 GLN 164 536 536 GLN GLN A . n A 1 165 ASP 165 537 537 ASP ASP A . n A 1 166 HIS 166 538 538 HIS HIS A . n A 1 167 THR 167 539 539 THR THR A . n A 1 168 LYS 168 540 540 LYS LYS A . n A 1 169 LEU 169 541 541 LEU LEU A . n A 1 170 ILE 170 542 542 ILE ILE A . n A 1 171 LEU 171 543 543 LEU LEU A . n A 1 172 CYS 172 544 544 CYS CYS A . n A 1 173 PRO 173 545 545 PRO PRO A . n A 1 174 LEU 174 546 546 LEU LEU A . n A 1 175 MET 175 547 547 MET MET A . n A 1 176 ALA 176 548 548 ALA ALA A . n A 1 177 ALA 177 549 549 ALA ALA A . n A 1 178 VAL 178 550 550 VAL VAL A . n A 1 179 THR 179 551 551 THR THR A . n A 1 180 TYR 180 552 552 TYR TYR A . n A 1 181 ILE 181 553 553 ILE ILE A . n A 1 182 ASP 182 554 554 ASP ASP A . n A 1 183 GLU 183 555 555 GLU GLU A . n A 1 184 LYS 184 556 556 LYS LYS A . n A 1 185 ARG 185 557 557 ARG ARG A . n A 1 186 ASP 186 558 558 ASP ASP A . n A 1 187 PHE 187 559 559 PHE PHE A . n A 1 188 ARG 188 560 560 ARG ARG A . n A 1 189 THR 189 561 561 THR THR A . n A 1 190 TYR 190 562 562 TYR TYR A . n A 1 191 ARG 191 563 563 ARG ARG A . n A 1 192 LEU 192 564 564 LEU LEU A . n A 1 193 SER 193 565 565 SER SER A . n A 1 194 LEU 194 566 566 LEU LEU A . n A 1 195 LEU 195 567 567 LEU LEU A . n A 1 196 GLU 196 568 568 GLU GLU A . n A 1 197 GLU 197 569 569 GLU GLU A . n A 1 198 TYR 198 570 570 TYR TYR A . n A 1 199 GLY 199 571 571 GLY GLY A . n A 1 200 CYS 200 572 572 CYS CYS A . n A 1 201 CYS 201 573 573 CYS CYS A . n A 1 202 LYS 202 574 574 LYS LYS A . n A 1 203 GLU 203 575 575 GLU GLU A . n A 1 204 LEU 204 576 576 LEU LEU A . n A 1 205 ALA 205 577 577 ALA ALA A . n A 1 206 SER 206 578 578 SER SER A . n A 1 207 ARG 207 579 579 ARG ARG A . n A 1 208 LEU 208 580 580 LEU LEU A . n A 1 209 ARG 209 581 581 ARG ARG A . n A 1 210 TYR 210 582 582 TYR TYR A . n A 1 211 ALA 211 583 583 ALA ALA A . n A 1 212 ARG 212 584 584 ARG ARG A . n A 1 213 THR 213 585 585 THR THR A . n A 1 214 MET 214 586 586 MET MET A . n A 1 215 VAL 215 587 587 VAL VAL A . n A 1 216 ASP 216 588 588 ASP ASP A . n A 1 217 LYS 217 589 589 LYS LYS A . n A 1 218 LEU 218 590 590 LEU LEU A . n A 1 219 LEU 219 591 591 LEU LEU A . n A 1 220 SER 220 592 592 SER SER A . n A 1 221 SER 221 593 593 SER SER A . n A 1 222 ARG 222 594 594 ARG ARG A . n B 2 1 VAL 1 1 1 VAL VAL B . n B 2 2 LEU 2 2 2 LEU LEU B . n B 2 3 SER 3 3 3 SER SER B . n B 2 4 TPO 4 4 4 TPO TPO B . n B 2 5 LEU 5 5 5 LEU LEU B . n B 2 6 NH2 6 6 6 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 601 601 HOH HOH A . C 3 HOH 2 602 602 HOH HOH A . C 3 HOH 3 603 603 HOH HOH A . C 3 HOH 4 604 604 HOH HOH A . C 3 HOH 5 605 605 HOH HOH A . C 3 HOH 6 606 606 HOH HOH A . C 3 HOH 7 607 607 HOH HOH A . C 3 HOH 8 608 608 HOH HOH A . C 3 HOH 9 609 609 HOH HOH A . C 3 HOH 10 610 610 HOH HOH A . C 3 HOH 11 611 611 HOH HOH A . C 3 HOH 12 612 612 HOH HOH A . C 3 HOH 13 613 613 HOH HOH A . C 3 HOH 14 614 614 HOH HOH A . C 3 HOH 15 615 615 HOH HOH A . C 3 HOH 16 616 616 HOH HOH A . C 3 HOH 17 617 617 HOH HOH A . C 3 HOH 18 618 618 HOH HOH A . C 3 HOH 19 619 619 HOH HOH A . C 3 HOH 20 620 620 HOH HOH A . C 3 HOH 21 621 621 HOH HOH A . C 3 HOH 22 622 622 HOH HOH A . C 3 HOH 23 623 623 HOH HOH A . C 3 HOH 24 624 624 HOH HOH A . C 3 HOH 25 625 625 HOH HOH A . C 3 HOH 26 626 626 HOH HOH A . C 3 HOH 27 627 627 HOH HOH A . C 3 HOH 28 628 628 HOH HOH A . C 3 HOH 29 629 629 HOH HOH A . C 3 HOH 30 630 630 HOH HOH A . C 3 HOH 31 631 631 HOH HOH A . C 3 HOH 32 632 632 HOH HOH A . C 3 HOH 33 633 633 HOH HOH A . C 3 HOH 34 634 634 HOH HOH A . C 3 HOH 35 635 635 HOH HOH A . C 3 HOH 36 636 636 HOH HOH A . C 3 HOH 37 637 637 HOH HOH A . C 3 HOH 38 638 638 HOH HOH A . C 3 HOH 39 639 639 HOH HOH A . C 3 HOH 40 640 640 HOH HOH A . C 3 HOH 41 641 642 HOH HOH A . C 3 HOH 42 642 643 HOH HOH A . C 3 HOH 43 643 644 HOH HOH A . C 3 HOH 44 644 645 HOH HOH A . C 3 HOH 45 645 646 HOH HOH A . C 3 HOH 46 646 647 HOH HOH A . C 3 HOH 47 647 648 HOH HOH A . C 3 HOH 48 648 649 HOH HOH A . C 3 HOH 49 649 650 HOH HOH A . C 3 HOH 50 650 651 HOH HOH A . C 3 HOH 51 651 652 HOH HOH A . C 3 HOH 52 652 653 HOH HOH A . C 3 HOH 53 653 654 HOH HOH A . C 3 HOH 54 654 657 HOH HOH A . D 3 HOH 1 101 641 HOH HOH B . D 3 HOH 2 102 655 HOH HOH B . D 3 HOH 3 103 656 HOH HOH B . D 3 HOH 4 104 658 HOH HOH B . D 3 HOH 5 105 659 HOH HOH B . D 3 HOH 6 106 660 HOH HOH B . D 3 HOH 7 107 661 HOH HOH B . D 3 HOH 8 108 662 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id TPO _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id TPO _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details PHOSPHOTHREONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 980 ? 1 MORE -7 ? 1 'SSA (A^2)' 10890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-13 2 'Structure model' 1 1 2014-11-26 3 'Structure model' 1 2 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' Advisory 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_abbrev' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 3 'Structure model' '_citation.pdbx_database_id_PubMed' 6 3 'Structure model' '_citation.title' 7 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 420 ? ? -131.89 -49.48 2 1 ASP A 449 ? ? -137.00 -37.23 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 392 ? A ARG 20 2 1 Y 1 A GLY 393 ? A GLY 21 3 1 Y 1 A PRO 499 ? A PRO 127 4 1 Y 1 A ARG 500 ? A ARG 128 5 1 Y 1 A GLU 501 ? A GLU 129 6 1 Y 1 A GLY 502 ? A GLY 130 7 1 Y 1 A ASP 503 ? A ASP 131 8 1 Y 1 A GLU 504 ? A GLU 132 9 1 Y 1 A LEU 505 ? A LEU 133 10 1 Y 1 A ALA 506 ? A ALA 134 11 1 Y 1 A ARG 507 ? A ARG 135 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #