data_4OC6 # _entry.id 4OC6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4OC6 RCSB RCSB084307 WWPDB D_1000084307 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LYA . unspecified PDB 4OBZ . unspecified PDB 4OD9 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4OC6 _pdbx_database_status.recvd_initial_deposition_date 2014-01-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Graedler, U.' 1 'Czodrowski, P.' 2 'Tsaklakidis, C.' 3 'Klein, M.' 4 'Maskos, K.' 5 'Leuthner, B.' 6 # _citation.id primary _citation.title 'Structure-based optimization of non-peptidic Cathepsin D inhibitors.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 24 _citation.page_first 4141 _citation.page_last 4150 _citation.year 2014 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25086681 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2014.07.054 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gradler, U.' 1 ? primary 'Czodrowski, P.' 2 ? primary 'Tsaklakidis, C.' 3 ? primary 'Klein, M.' 4 ? primary 'Werkmann, D.' 5 ? primary 'Lindemann, S.' 6 ? primary 'Maskos, K.' 7 ? primary 'Leuthner, B.' 8 ? # _cell.entry_id 4OC6 _cell.length_a 77.022 _cell.length_b 77.022 _cell.length_c 251.586 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OC6 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin D light chain' 11273.560 1 3.4.23.5 ? ? ? 2 polymer man 'Cathepsin D heavy chain' 26540.561 1 3.4.23.5 ? ? ? 3 branched man ;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 748.682 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn ;2-bromo-N-[(2S,3S)-4-{[2-(2,4-dichlorophenyl)ethyl][3-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propanoyl]amino}-3-hydroxy-1-(3-phenoxyphenyl)butan-2-yl]-4,5-dimethoxybenzamide ; 889.614 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 water nat water 18.015 10 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFD IHYGSGSLSGYLSQDTVSVPCQS ; ;PAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFD IHYGSGSLSGYLSQDTVSVPCQS ; A ? 2 'polypeptide(L)' no no ;GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA ARL ; ;GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA ARL ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ALA n 1 3 VAL n 1 4 THR n 1 5 GLU n 1 6 GLY n 1 7 PRO n 1 8 ILE n 1 9 PRO n 1 10 GLU n 1 11 VAL n 1 12 LEU n 1 13 LYS n 1 14 ASN n 1 15 TYR n 1 16 MET n 1 17 ASP n 1 18 ALA n 1 19 GLN n 1 20 TYR n 1 21 TYR n 1 22 GLY n 1 23 GLU n 1 24 ILE n 1 25 GLY n 1 26 ILE n 1 27 GLY n 1 28 THR n 1 29 PRO n 1 30 PRO n 1 31 GLN n 1 32 CYS n 1 33 PHE n 1 34 THR n 1 35 VAL n 1 36 VAL n 1 37 PHE n 1 38 ASP n 1 39 THR n 1 40 GLY n 1 41 SER n 1 42 SER n 1 43 ASN n 1 44 LEU n 1 45 TRP n 1 46 VAL n 1 47 PRO n 1 48 SER n 1 49 ILE n 1 50 HIS n 1 51 CYS n 1 52 LYS n 1 53 LEU n 1 54 LEU n 1 55 ASP n 1 56 ILE n 1 57 ALA n 1 58 CYS n 1 59 TRP n 1 60 ILE n 1 61 HIS n 1 62 HIS n 1 63 LYS n 1 64 TYR n 1 65 ASN n 1 66 SER n 1 67 ASP n 1 68 LYS n 1 69 SER n 1 70 SER n 1 71 THR n 1 72 TYR n 1 73 VAL n 1 74 LYS n 1 75 ASN n 1 76 GLY n 1 77 THR n 1 78 SER n 1 79 PHE n 1 80 ASP n 1 81 ILE n 1 82 HIS n 1 83 TYR n 1 84 GLY n 1 85 SER n 1 86 GLY n 1 87 SER n 1 88 LEU n 1 89 SER n 1 90 GLY n 1 91 TYR n 1 92 LEU n 1 93 SER n 1 94 GLN n 1 95 ASP n 1 96 THR n 1 97 VAL n 1 98 SER n 1 99 VAL n 1 100 PRO n 1 101 CYS n 1 102 GLN n 1 103 SER n 2 1 GLY n 2 2 GLY n 2 3 VAL n 2 4 LYS n 2 5 VAL n 2 6 GLU n 2 7 ARG n 2 8 GLN n 2 9 VAL n 2 10 PHE n 2 11 GLY n 2 12 GLU n 2 13 ALA n 2 14 THR n 2 15 LYS n 2 16 GLN n 2 17 PRO n 2 18 GLY n 2 19 ILE n 2 20 THR n 2 21 PHE n 2 22 ILE n 2 23 ALA n 2 24 ALA n 2 25 LYS n 2 26 PHE n 2 27 ASP n 2 28 GLY n 2 29 ILE n 2 30 LEU n 2 31 GLY n 2 32 MET n 2 33 ALA n 2 34 TYR n 2 35 PRO n 2 36 ARG n 2 37 ILE n 2 38 SER n 2 39 VAL n 2 40 ASN n 2 41 ASN n 2 42 VAL n 2 43 LEU n 2 44 PRO n 2 45 VAL n 2 46 PHE n 2 47 ASP n 2 48 ASN n 2 49 LEU n 2 50 MET n 2 51 GLN n 2 52 GLN n 2 53 LYS n 2 54 LEU n 2 55 VAL n 2 56 ASP n 2 57 GLN n 2 58 ASN n 2 59 ILE n 2 60 PHE n 2 61 SER n 2 62 PHE n 2 63 TYR n 2 64 LEU n 2 65 SER n 2 66 ARG n 2 67 ASP n 2 68 PRO n 2 69 ASP n 2 70 ALA n 2 71 GLN n 2 72 PRO n 2 73 GLY n 2 74 GLY n 2 75 GLU n 2 76 LEU n 2 77 MET n 2 78 LEU n 2 79 GLY n 2 80 GLY n 2 81 THR n 2 82 ASP n 2 83 SER n 2 84 LYS n 2 85 TYR n 2 86 TYR n 2 87 LYS n 2 88 GLY n 2 89 SER n 2 90 LEU n 2 91 SER n 2 92 TYR n 2 93 LEU n 2 94 ASN n 2 95 VAL n 2 96 THR n 2 97 ARG n 2 98 LYS n 2 99 ALA n 2 100 TYR n 2 101 TRP n 2 102 GLN n 2 103 VAL n 2 104 HIS n 2 105 LEU n 2 106 ASP n 2 107 GLN n 2 108 VAL n 2 109 GLU n 2 110 VAL n 2 111 ALA n 2 112 SER n 2 113 GLY n 2 114 LEU n 2 115 THR n 2 116 LEU n 2 117 CYS n 2 118 LYS n 2 119 GLU n 2 120 GLY n 2 121 CYS n 2 122 GLU n 2 123 ALA n 2 124 ILE n 2 125 VAL n 2 126 ASP n 2 127 THR n 2 128 GLY n 2 129 THR n 2 130 SER n 2 131 LEU n 2 132 MET n 2 133 VAL n 2 134 GLY n 2 135 PRO n 2 136 VAL n 2 137 ASP n 2 138 GLU n 2 139 VAL n 2 140 ARG n 2 141 GLU n 2 142 LEU n 2 143 GLN n 2 144 LYS n 2 145 ALA n 2 146 ILE n 2 147 GLY n 2 148 ALA n 2 149 VAL n 2 150 PRO n 2 151 LEU n 2 152 ILE n 2 153 GLN n 2 154 GLY n 2 155 GLU n 2 156 TYR n 2 157 MET n 2 158 ILE n 2 159 PRO n 2 160 CYS n 2 161 GLU n 2 162 LYS n 2 163 VAL n 2 164 SER n 2 165 THR n 2 166 LEU n 2 167 PRO n 2 168 ALA n 2 169 ILE n 2 170 THR n 2 171 LEU n 2 172 LYS n 2 173 LEU n 2 174 GLY n 2 175 GLY n 2 176 LYS n 2 177 GLY n 2 178 TYR n 2 179 LYS n 2 180 LEU n 2 181 SER n 2 182 PRO n 2 183 GLU n 2 184 ASP n 2 185 TYR n 2 186 THR n 2 187 LEU n 2 188 LYS n 2 189 VAL n 2 190 SER n 2 191 GLN n 2 192 ALA n 2 193 GLY n 2 194 LYS n 2 195 THR n 2 196 LEU n 2 197 CYS n 2 198 LEU n 2 199 SER n 2 200 GLY n 2 201 PHE n 2 202 MET n 2 203 GLY n 2 204 MET n 2 205 ASP n 2 206 ILE n 2 207 PRO n 2 208 PRO n 2 209 PRO n 2 210 SER n 2 211 GLY n 2 212 PRO n 2 213 LEU n 2 214 TRP n 2 215 ILE n 2 216 LEU n 2 217 GLY n 2 218 ASP n 2 219 VAL n 2 220 PHE n 2 221 ILE n 2 222 GLY n 2 223 ARG n 2 224 TYR n 2 225 TYR n 2 226 THR n 2 227 VAL n 2 228 PHE n 2 229 ASP n 2 230 ARG n 2 231 ASP n 2 232 ASN n 2 233 ASN n 2 234 ARG n 2 235 VAL n 2 236 GLY n 2 237 PHE n 2 238 ALA n 2 239 GLU n 2 240 ALA n 2 241 ALA n 2 242 ARG n 2 243 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'CTSD, CPSD' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? 'CTSD, CPSD' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CATD_HUMAN P07339 1 ;PAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFD IHYGSGSLSGYLSQDTVSVPCQS ; 60 ? 2 UNP CATD_HUMAN P07339 2 ;GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA ARL ; 170 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4OC6 A 1 ? 103 ? P07339 60 ? 162 ? -4 98 2 2 4OC6 B 1 ? 243 ? P07339 170 ? 412 ? 106 348 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2S1 non-polymer . ;2-bromo-N-[(2S,3S)-4-{[2-(2,4-dichlorophenyl)ethyl][3-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propanoyl]amino}-3-hydroxy-1-(3-phenoxyphenyl)butan-2-yl]-4,5-dimethoxybenzamide ; ? 'C44 H40 Br Cl2 N3 O8' 889.614 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4OC6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_percent_sol 56.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details 'PEG 3350, pH 5.5, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.999 # _reflns.entry_id 4OC6 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 66.67 _reflns.d_resolution_high 2.64 _reflns.number_obs 13822 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 93.29 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.64 _reflns_shell.d_res_low 2.78 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.850 _reflns_shell.pdbx_Rsym_value 0.94 _reflns_shell.meanI_over_sigI_obs 1.99 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1949 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4OC6 _refine.ls_number_reflns_obs 13628 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.76 _refine.ls_d_res_high 2.64 _refine.ls_percent_reflns_obs 98.63 _refine.ls_R_factor_obs 0.2110 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2068 _refine.ls_R_factor_R_free 0.2818 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.15 _refine.ls_number_reflns_R_free 838 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9423 _refine.correlation_coeff_Fo_to_Fc_free 0.9121 _refine.B_iso_mean 87.11 _refine.aniso_B[1][1] -2.0745 _refine.aniso_B[2][2] -2.0745 _refine.aniso_B[3][3] 4.1490 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.566 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4OC6 _refine_analyze.Luzzati_coordinate_error_obs 0.530 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2620 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 128 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 2758 _refine_hist.d_res_high 2.64 _refine_hist.d_res_low 45.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.010 ? 2.00 2823 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.22 ? 2.00 3843 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 957 SINUSOIDAL 'X-RAY DIFFRACTION' t_incorr_chiral_ct ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 60 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 404 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 2823 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_omega_torsion 3.25 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 19.95 ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 369 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 3094 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 2.64 _refine_ls_shell.d_res_low 2.85 _refine_ls_shell.number_reflns_R_work 2572 _refine_ls_shell.R_factor_R_work 0.2596 _refine_ls_shell.percent_reflns_obs 98.63 _refine_ls_shell.R_factor_R_free 0.3324 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 6.81 _refine_ls_shell.number_reflns_R_free 188 _refine_ls_shell.number_reflns_all 2760 _refine_ls_shell.R_factor_all 0.2648 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4OC6 _struct.title ;Structure of Cathepsin D with inhibitor 2-bromo-N-[(2S,3S)-4-{[2-(2,4-dichlorophenyl)ethyl][3-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propanoyl]amino}-3-hydroxy-1-(3-phenoxyphenyl)butan-2-yl]-4,5-dimethoxybenzamide ; _struct.pdbx_descriptor 'Cathepsin D light chain (E.C.3.4.23.5), Cathepsin D heavy chain (E.C.3.4.23.5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OC6 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'Lysosomal Aspartic Protease, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 55 ? HIS A 61 ? ASP A 50 HIS A 56 1 ? 7 HELX_P HELX_P2 2 ASN A 65 ? SER A 69 ? ASN A 60 SER A 64 5 ? 5 HELX_P HELX_P3 3 ILE B 19 ? ALA B 24 ? ILE B 124 ALA B 129 1 ? 6 HELX_P HELX_P4 4 TYR B 34 ? VAL B 42 ? TYR B 139 VAL B 147 5 ? 9 HELX_P HELX_P5 5 PRO B 44 ? GLN B 52 ? PRO B 149 GLN B 157 1 ? 9 HELX_P HELX_P6 6 ASP B 82 ? TYR B 86 ? ASP B 187 TYR B 191 5 ? 5 HELX_P HELX_P7 7 PRO B 135 ? GLY B 147 ? PRO B 240 GLY B 252 1 ? 13 HELX_P HELX_P8 8 PRO B 159 ? SER B 164 ? PRO B 264 SER B 269 1 ? 6 HELX_P HELX_P9 9 GLY B 217 ? ARG B 223 ? GLY B 322 ARG B 328 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 27 A CYS 96 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf2 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 58 SG ? ? A CYS 46 A CYS 53 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf3 disulf ? ? B CYS 117 SG ? ? ? 1_555 B CYS 121 SG ? ? B CYS 222 B CYS 226 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf4 disulf ? ? B CYS 160 SG ? ? ? 1_555 B CYS 197 SG ? ? B CYS 265 B CYS 302 1_555 ? ? ? ? ? ? ? 2.052 ? ? covale1 covale one ? A ASN 75 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 70 C NAG 1 1_555 ? ? ? ? ? ? ? 1.432 ? N-Glycosylation covale2 covale one ? B ASN 94 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 199 B NAG 401 1_555 ? ? ? ? ? ? ? 1.432 ? N-Glycosylation covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale4 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale5 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.415 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 28 A . ? THR 23 A PRO 29 A ? PRO 24 A 1 0.18 2 VAL 99 A . ? VAL 94 A PRO 100 A ? PRO 95 A 1 3.02 3 GLN 71 B . ? GLN 176 B PRO 72 B ? PRO 177 B 1 -5.26 4 PRO 208 B . ? PRO 313 B PRO 209 B ? PRO 314 B 1 2.72 5 GLY 211 B . ? GLY 316 B PRO 212 B ? PRO 317 B 1 0.66 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 13 ? C ? 3 ? D ? 4 ? E ? 2 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel B 10 11 ? anti-parallel B 11 12 ? anti-parallel B 12 13 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 73 ? HIS A 82 ? VAL A 68 HIS A 77 A 2 SER A 87 ? VAL A 99 ? SER A 82 VAL A 94 A 3 GLN A 19 ? ILE A 26 ? GLN A 14 ILE A 21 A 4 ILE A 8 ? TYR A 15 ? ILE A 3 TYR A 10 A 5 GLY B 74 ? LEU B 78 ? GLY B 179 LEU B 183 A 6 ILE B 59 ? LEU B 64 ? ILE B 164 LEU B 169 A 7 TYR B 224 ? ASP B 229 ? TYR B 329 ASP B 334 A 8 ARG B 234 ? GLU B 239 ? ARG B 339 GLU B 344 A 9 SER B 91 ? ASN B 94 ? SER B 196 ASN B 199 B 1 VAL A 73 ? HIS A 82 ? VAL A 68 HIS A 77 B 2 SER A 87 ? VAL A 99 ? SER A 82 VAL A 94 B 3 VAL B 3 ? LYS B 15 ? VAL B 108 LYS B 120 B 4 LEU A 44 ? PRO A 47 ? LEU A 39 PRO A 42 B 5 GLY B 28 ? GLY B 31 ? GLY B 133 GLY B 136 B 6 GLN A 31 ? ASP A 38 ? GLN A 26 ASP A 33 B 7 GLN A 19 ? ILE A 26 ? GLN A 14 ILE A 21 B 8 ILE A 8 ? TYR A 15 ? ILE A 3 TYR A 10 B 9 GLY B 74 ? LEU B 78 ? GLY B 179 LEU B 183 B 10 ILE B 59 ? LEU B 64 ? ILE B 164 LEU B 169 B 11 TYR B 224 ? ASP B 229 ? TYR B 329 ASP B 334 B 12 ARG B 234 ? GLU B 239 ? ARG B 339 GLU B 344 B 13 SER B 91 ? ASN B 94 ? SER B 196 ASN B 199 C 1 GLN B 102 ? LEU B 105 ? GLN B 207 LEU B 210 C 2 CYS B 121 ? VAL B 125 ? CYS B 226 VAL B 230 C 3 TRP B 214 ? LEU B 216 ? TRP B 319 LEU B 321 D 1 THR B 115 ? LEU B 116 ? THR B 220 LEU B 221 D 2 GLN B 107 ? VAL B 110 ? GLN B 212 VAL B 215 D 3 ILE B 169 ? LEU B 173 ? ILE B 274 LEU B 278 D 4 LYS B 176 ? LEU B 180 ? LYS B 281 LEU B 285 E 1 MET B 132 ? GLY B 134 ? MET B 237 GLY B 239 E 2 PHE B 201 ? GLY B 203 ? PHE B 306 GLY B 308 F 1 VAL B 149 ? PRO B 150 ? VAL B 254 PRO B 255 F 2 TYR B 156 ? ILE B 158 ? TYR B 261 ILE B 263 F 3 LYS B 194 ? SER B 199 ? LYS B 299 SER B 304 F 4 THR B 186 ? GLN B 191 ? THR B 291 GLN B 296 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 73 ? N VAL A 68 O GLN A 94 ? O GLN A 89 A 2 3 O SER A 98 ? O SER A 93 N GLY A 25 ? N GLY A 20 A 3 4 O GLN A 19 ? O GLN A 14 N TYR A 15 ? N TYR A 10 A 4 5 N GLU A 10 ? N GLU A 5 O LEU B 76 ? O LEU B 181 A 5 6 O GLU B 75 ? O GLU B 180 N TYR B 63 ? N TYR B 168 A 6 7 N PHE B 60 ? N PHE B 165 O PHE B 228 ? O PHE B 333 A 7 8 N VAL B 227 ? N VAL B 332 O GLY B 236 ? O GLY B 341 A 8 9 O VAL B 235 ? O VAL B 340 N LEU B 93 ? N LEU B 198 B 1 2 N VAL A 73 ? N VAL A 68 O GLN A 94 ? O GLN A 89 B 2 3 N TYR A 91 ? N TYR A 86 O GLU B 12 ? O GLU B 117 B 3 4 O ALA B 13 ? O ALA B 118 N VAL A 46 ? N VAL A 41 B 4 5 N TRP A 45 ? N TRP A 40 O ILE B 29 ? O ILE B 134 B 5 6 O LEU B 30 ? O LEU B 135 N VAL A 36 ? N VAL A 31 B 6 7 O PHE A 33 ? O PHE A 28 N ILE A 24 ? N ILE A 19 B 7 8 O GLN A 19 ? O GLN A 14 N TYR A 15 ? N TYR A 10 B 8 9 N GLU A 10 ? N GLU A 5 O LEU B 76 ? O LEU B 181 B 9 10 O GLU B 75 ? O GLU B 180 N TYR B 63 ? N TYR B 168 B 10 11 N PHE B 60 ? N PHE B 165 O PHE B 228 ? O PHE B 333 B 11 12 N VAL B 227 ? N VAL B 332 O GLY B 236 ? O GLY B 341 B 12 13 O VAL B 235 ? O VAL B 340 N LEU B 93 ? N LEU B 198 C 1 2 N VAL B 103 ? N VAL B 208 O ALA B 123 ? O ALA B 228 C 2 3 N ILE B 124 ? N ILE B 229 O LEU B 216 ? O LEU B 321 D 1 2 O LEU B 116 ? O LEU B 221 N VAL B 108 ? N VAL B 213 D 2 3 N GLU B 109 ? N GLU B 214 O THR B 170 ? O THR B 275 D 3 4 N ILE B 169 ? N ILE B 274 O LEU B 180 ? O LEU B 285 E 1 2 N GLY B 134 ? N GLY B 239 O MET B 202 ? O MET B 307 F 1 2 N VAL B 149 ? N VAL B 254 O MET B 157 ? O MET B 262 F 2 3 N ILE B 158 ? N ILE B 263 O CYS B 197 ? O CYS B 302 F 3 4 O LEU B 198 ? O LEU B 303 N LEU B 187 ? N LEU B 292 # _database_PDB_matrix.entry_id 4OC6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4OC6 _atom_sites.fract_transf_matrix[1][1] 0.012983 _atom_sites.fract_transf_matrix[1][2] 0.007496 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014992 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003975 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 -4 ? ? ? A . n A 1 2 ALA 2 -3 ? ? ? A . n A 1 3 VAL 3 -2 ? ? ? A . n A 1 4 THR 4 -1 ? ? ? A . n A 1 5 GLU 5 0 ? ? ? A . n A 1 6 GLY 6 1 1 GLY GLY A . n A 1 7 PRO 7 2 2 PRO PRO A . n A 1 8 ILE 8 3 3 ILE ILE A . n A 1 9 PRO 9 4 4 PRO PRO A . n A 1 10 GLU 10 5 5 GLU GLU A . n A 1 11 VAL 11 6 6 VAL VAL A . n A 1 12 LEU 12 7 7 LEU LEU A . n A 1 13 LYS 13 8 8 LYS LYS A . n A 1 14 ASN 14 9 9 ASN ASN A . n A 1 15 TYR 15 10 10 TYR TYR A . n A 1 16 MET 16 11 11 MET MET A . n A 1 17 ASP 17 12 12 ASP ASP A . n A 1 18 ALA 18 13 13 ALA ALA A . n A 1 19 GLN 19 14 14 GLN GLN A . n A 1 20 TYR 20 15 15 TYR TYR A . n A 1 21 TYR 21 16 16 TYR TYR A . n A 1 22 GLY 22 17 17 GLY GLY A . n A 1 23 GLU 23 18 18 GLU GLU A . n A 1 24 ILE 24 19 19 ILE ILE A . n A 1 25 GLY 25 20 20 GLY GLY A . n A 1 26 ILE 26 21 21 ILE ILE A . n A 1 27 GLY 27 22 22 GLY GLY A . n A 1 28 THR 28 23 23 THR THR A . n A 1 29 PRO 29 24 24 PRO PRO A . n A 1 30 PRO 30 25 25 PRO PRO A . n A 1 31 GLN 31 26 26 GLN GLN A . n A 1 32 CYS 32 27 27 CYS CYS A . n A 1 33 PHE 33 28 28 PHE PHE A . n A 1 34 THR 34 29 29 THR THR A . n A 1 35 VAL 35 30 30 VAL VAL A . n A 1 36 VAL 36 31 31 VAL VAL A . n A 1 37 PHE 37 32 32 PHE PHE A . n A 1 38 ASP 38 33 33 ASP ASP A . n A 1 39 THR 39 34 34 THR THR A . n A 1 40 GLY 40 35 35 GLY GLY A . n A 1 41 SER 41 36 36 SER SER A . n A 1 42 SER 42 37 37 SER SER A . n A 1 43 ASN 43 38 38 ASN ASN A . n A 1 44 LEU 44 39 39 LEU LEU A . n A 1 45 TRP 45 40 40 TRP TRP A . n A 1 46 VAL 46 41 41 VAL VAL A . n A 1 47 PRO 47 42 42 PRO PRO A . n A 1 48 SER 48 43 43 SER SER A . n A 1 49 ILE 49 44 44 ILE ILE A . n A 1 50 HIS 50 45 45 HIS HIS A . n A 1 51 CYS 51 46 46 CYS CYS A . n A 1 52 LYS 52 47 47 LYS LYS A . n A 1 53 LEU 53 48 48 LEU LEU A . n A 1 54 LEU 54 49 49 LEU LEU A . n A 1 55 ASP 55 50 50 ASP ASP A . n A 1 56 ILE 56 51 51 ILE ILE A . n A 1 57 ALA 57 52 52 ALA ALA A . n A 1 58 CYS 58 53 53 CYS CYS A . n A 1 59 TRP 59 54 54 TRP TRP A . n A 1 60 ILE 60 55 55 ILE ILE A . n A 1 61 HIS 61 56 56 HIS HIS A . n A 1 62 HIS 62 57 57 HIS HIS A . n A 1 63 LYS 63 58 58 LYS LYS A . n A 1 64 TYR 64 59 59 TYR TYR A . n A 1 65 ASN 65 60 60 ASN ASN A . n A 1 66 SER 66 61 61 SER SER A . n A 1 67 ASP 67 62 62 ASP ASP A . n A 1 68 LYS 68 63 63 LYS LYS A . n A 1 69 SER 69 64 64 SER SER A . n A 1 70 SER 70 65 65 SER SER A . n A 1 71 THR 71 66 66 THR THR A . n A 1 72 TYR 72 67 67 TYR TYR A . n A 1 73 VAL 73 68 68 VAL VAL A . n A 1 74 LYS 74 69 69 LYS LYS A . n A 1 75 ASN 75 70 70 ASN ASN A . n A 1 76 GLY 76 71 71 GLY GLY A . n A 1 77 THR 77 72 72 THR THR A . n A 1 78 SER 78 73 73 SER SER A . n A 1 79 PHE 79 74 74 PHE PHE A . n A 1 80 ASP 80 75 75 ASP ASP A . n A 1 81 ILE 81 76 76 ILE ILE A . n A 1 82 HIS 82 77 77 HIS HIS A . n A 1 83 TYR 83 78 78 TYR TYR A . n A 1 84 GLY 84 79 79 GLY GLY A . n A 1 85 SER 85 80 80 SER SER A . n A 1 86 GLY 86 81 81 GLY GLY A . n A 1 87 SER 87 82 82 SER SER A . n A 1 88 LEU 88 83 83 LEU LEU A . n A 1 89 SER 89 84 84 SER SER A . n A 1 90 GLY 90 85 85 GLY GLY A . n A 1 91 TYR 91 86 86 TYR TYR A . n A 1 92 LEU 92 87 87 LEU LEU A . n A 1 93 SER 93 88 88 SER SER A . n A 1 94 GLN 94 89 89 GLN GLN A . n A 1 95 ASP 95 90 90 ASP ASP A . n A 1 96 THR 96 91 91 THR THR A . n A 1 97 VAL 97 92 92 VAL VAL A . n A 1 98 SER 98 93 93 SER SER A . n A 1 99 VAL 99 94 94 VAL VAL A . n A 1 100 PRO 100 95 95 PRO PRO A . n A 1 101 CYS 101 96 96 CYS CYS A . n A 1 102 GLN 102 97 97 GLN GLN A . n A 1 103 SER 103 98 98 SER SER A . n B 2 1 GLY 1 106 106 GLY GLY B . n B 2 2 GLY 2 107 107 GLY GLY B . n B 2 3 VAL 3 108 108 VAL VAL B . n B 2 4 LYS 4 109 109 LYS LYS B . n B 2 5 VAL 5 110 110 VAL VAL B . n B 2 6 GLU 6 111 111 GLU GLU B . n B 2 7 ARG 7 112 112 ARG ARG B . n B 2 8 GLN 8 113 113 GLN GLN B . n B 2 9 VAL 9 114 114 VAL VAL B . n B 2 10 PHE 10 115 115 PHE PHE B . n B 2 11 GLY 11 116 116 GLY GLY B . n B 2 12 GLU 12 117 117 GLU GLU B . n B 2 13 ALA 13 118 118 ALA ALA B . n B 2 14 THR 14 119 119 THR THR B . n B 2 15 LYS 15 120 120 LYS LYS B . n B 2 16 GLN 16 121 121 GLN GLN B . n B 2 17 PRO 17 122 122 PRO PRO B . n B 2 18 GLY 18 123 123 GLY GLY B . n B 2 19 ILE 19 124 124 ILE ILE B . n B 2 20 THR 20 125 125 THR THR B . n B 2 21 PHE 21 126 126 PHE PHE B . n B 2 22 ILE 22 127 127 ILE ILE B . n B 2 23 ALA 23 128 128 ALA ALA B . n B 2 24 ALA 24 129 129 ALA ALA B . n B 2 25 LYS 25 130 130 LYS LYS B . n B 2 26 PHE 26 131 131 PHE PHE B . n B 2 27 ASP 27 132 132 ASP ASP B . n B 2 28 GLY 28 133 133 GLY GLY B . n B 2 29 ILE 29 134 134 ILE ILE B . n B 2 30 LEU 30 135 135 LEU LEU B . n B 2 31 GLY 31 136 136 GLY GLY B . n B 2 32 MET 32 137 137 MET MET B . n B 2 33 ALA 33 138 138 ALA ALA B . n B 2 34 TYR 34 139 139 TYR TYR B . n B 2 35 PRO 35 140 140 PRO PRO B . n B 2 36 ARG 36 141 141 ARG ARG B . n B 2 37 ILE 37 142 142 ILE ILE B . n B 2 38 SER 38 143 143 SER SER B . n B 2 39 VAL 39 144 144 VAL VAL B . n B 2 40 ASN 40 145 145 ASN ASN B . n B 2 41 ASN 41 146 146 ASN ASN B . n B 2 42 VAL 42 147 147 VAL VAL B . n B 2 43 LEU 43 148 148 LEU LEU B . n B 2 44 PRO 44 149 149 PRO PRO B . n B 2 45 VAL 45 150 150 VAL VAL B . n B 2 46 PHE 46 151 151 PHE PHE B . n B 2 47 ASP 47 152 152 ASP ASP B . n B 2 48 ASN 48 153 153 ASN ASN B . n B 2 49 LEU 49 154 154 LEU LEU B . n B 2 50 MET 50 155 155 MET MET B . n B 2 51 GLN 51 156 156 GLN GLN B . n B 2 52 GLN 52 157 157 GLN GLN B . n B 2 53 LYS 53 158 158 LYS LYS B . n B 2 54 LEU 54 159 159 LEU LEU B . n B 2 55 VAL 55 160 160 VAL VAL B . n B 2 56 ASP 56 161 161 ASP ASP B . n B 2 57 GLN 57 162 162 GLN GLN B . n B 2 58 ASN 58 163 163 ASN ASN B . n B 2 59 ILE 59 164 164 ILE ILE B . n B 2 60 PHE 60 165 165 PHE PHE B . n B 2 61 SER 61 166 166 SER SER B . n B 2 62 PHE 62 167 167 PHE PHE B . n B 2 63 TYR 63 168 168 TYR TYR B . n B 2 64 LEU 64 169 169 LEU LEU B . n B 2 65 SER 65 170 170 SER SER B . n B 2 66 ARG 66 171 171 ARG ARG B . n B 2 67 ASP 67 172 172 ASP ASP B . n B 2 68 PRO 68 173 173 PRO PRO B . n B 2 69 ASP 69 174 174 ASP ASP B . n B 2 70 ALA 70 175 175 ALA ALA B . n B 2 71 GLN 71 176 176 GLN GLN B . n B 2 72 PRO 72 177 177 PRO PRO B . n B 2 73 GLY 73 178 178 GLY GLY B . n B 2 74 GLY 74 179 179 GLY GLY B . n B 2 75 GLU 75 180 180 GLU GLU B . n B 2 76 LEU 76 181 181 LEU LEU B . n B 2 77 MET 77 182 182 MET MET B . n B 2 78 LEU 78 183 183 LEU LEU B . n B 2 79 GLY 79 184 184 GLY GLY B . n B 2 80 GLY 80 185 185 GLY GLY B . n B 2 81 THR 81 186 186 THR THR B . n B 2 82 ASP 82 187 187 ASP ASP B . n B 2 83 SER 83 188 188 SER SER B . n B 2 84 LYS 84 189 189 LYS LYS B . n B 2 85 TYR 85 190 190 TYR TYR B . n B 2 86 TYR 86 191 191 TYR TYR B . n B 2 87 LYS 87 192 192 LYS LYS B . n B 2 88 GLY 88 193 193 GLY GLY B . n B 2 89 SER 89 194 194 SER SER B . n B 2 90 LEU 90 195 195 LEU LEU B . n B 2 91 SER 91 196 196 SER SER B . n B 2 92 TYR 92 197 197 TYR TYR B . n B 2 93 LEU 93 198 198 LEU LEU B . n B 2 94 ASN 94 199 199 ASN ASN B . n B 2 95 VAL 95 200 200 VAL VAL B . n B 2 96 THR 96 201 201 THR THR B . n B 2 97 ARG 97 202 202 ARG ARG B . n B 2 98 LYS 98 203 203 LYS LYS B . n B 2 99 ALA 99 204 204 ALA ALA B . n B 2 100 TYR 100 205 205 TYR TYR B . n B 2 101 TRP 101 206 206 TRP TRP B . n B 2 102 GLN 102 207 207 GLN GLN B . n B 2 103 VAL 103 208 208 VAL VAL B . n B 2 104 HIS 104 209 209 HIS HIS B . n B 2 105 LEU 105 210 210 LEU LEU B . n B 2 106 ASP 106 211 211 ASP ASP B . n B 2 107 GLN 107 212 212 GLN GLN B . n B 2 108 VAL 108 213 213 VAL VAL B . n B 2 109 GLU 109 214 214 GLU GLU B . n B 2 110 VAL 110 215 215 VAL VAL B . n B 2 111 ALA 111 216 216 ALA ALA B . n B 2 112 SER 112 217 217 SER SER B . n B 2 113 GLY 113 218 218 GLY GLY B . n B 2 114 LEU 114 219 219 LEU LEU B . n B 2 115 THR 115 220 220 THR THR B . n B 2 116 LEU 116 221 221 LEU LEU B . n B 2 117 CYS 117 222 222 CYS CYS B . n B 2 118 LYS 118 223 223 LYS LYS B . n B 2 119 GLU 119 224 224 GLU GLU B . n B 2 120 GLY 120 225 225 GLY GLY B . n B 2 121 CYS 121 226 226 CYS CYS B . n B 2 122 GLU 122 227 227 GLU GLU B . n B 2 123 ALA 123 228 228 ALA ALA B . n B 2 124 ILE 124 229 229 ILE ILE B . n B 2 125 VAL 125 230 230 VAL VAL B . n B 2 126 ASP 126 231 231 ASP ASP B . n B 2 127 THR 127 232 232 THR THR B . n B 2 128 GLY 128 233 233 GLY GLY B . n B 2 129 THR 129 234 234 THR THR B . n B 2 130 SER 130 235 235 SER SER B . n B 2 131 LEU 131 236 236 LEU LEU B . n B 2 132 MET 132 237 237 MET MET B . n B 2 133 VAL 133 238 238 VAL VAL B . n B 2 134 GLY 134 239 239 GLY GLY B . n B 2 135 PRO 135 240 240 PRO PRO B . n B 2 136 VAL 136 241 241 VAL VAL B . n B 2 137 ASP 137 242 242 ASP ASP B . n B 2 138 GLU 138 243 243 GLU GLU B . n B 2 139 VAL 139 244 244 VAL VAL B . n B 2 140 ARG 140 245 245 ARG ARG B . n B 2 141 GLU 141 246 246 GLU GLU B . n B 2 142 LEU 142 247 247 LEU LEU B . n B 2 143 GLN 143 248 248 GLN GLN B . n B 2 144 LYS 144 249 249 LYS LYS B . n B 2 145 ALA 145 250 250 ALA ALA B . n B 2 146 ILE 146 251 251 ILE ILE B . n B 2 147 GLY 147 252 252 GLY GLY B . n B 2 148 ALA 148 253 253 ALA ALA B . n B 2 149 VAL 149 254 254 VAL VAL B . n B 2 150 PRO 150 255 255 PRO PRO B . n B 2 151 LEU 151 256 256 LEU LEU B . n B 2 152 ILE 152 257 257 ILE ILE B . n B 2 153 GLN 153 258 258 GLN GLN B . n B 2 154 GLY 154 259 259 GLY GLY B . n B 2 155 GLU 155 260 260 GLU GLU B . n B 2 156 TYR 156 261 261 TYR TYR B . n B 2 157 MET 157 262 262 MET MET B . n B 2 158 ILE 158 263 263 ILE ILE B . n B 2 159 PRO 159 264 264 PRO PRO B . n B 2 160 CYS 160 265 265 CYS CYS B . n B 2 161 GLU 161 266 266 GLU GLU B . n B 2 162 LYS 162 267 267 LYS LYS B . n B 2 163 VAL 163 268 268 VAL VAL B . n B 2 164 SER 164 269 269 SER SER B . n B 2 165 THR 165 270 270 THR THR B . n B 2 166 LEU 166 271 271 LEU LEU B . n B 2 167 PRO 167 272 272 PRO PRO B . n B 2 168 ALA 168 273 273 ALA ALA B . n B 2 169 ILE 169 274 274 ILE ILE B . n B 2 170 THR 170 275 275 THR THR B . n B 2 171 LEU 171 276 276 LEU LEU B . n B 2 172 LYS 172 277 277 LYS LYS B . n B 2 173 LEU 173 278 278 LEU LEU B . n B 2 174 GLY 174 279 279 GLY GLY B . n B 2 175 GLY 175 280 280 GLY GLY B . n B 2 176 LYS 176 281 281 LYS LYS B . n B 2 177 GLY 177 282 282 GLY GLY B . n B 2 178 TYR 178 283 283 TYR TYR B . n B 2 179 LYS 179 284 284 LYS LYS B . n B 2 180 LEU 180 285 285 LEU LEU B . n B 2 181 SER 181 286 286 SER SER B . n B 2 182 PRO 182 287 287 PRO PRO B . n B 2 183 GLU 183 288 288 GLU GLU B . n B 2 184 ASP 184 289 289 ASP ASP B . n B 2 185 TYR 185 290 290 TYR TYR B . n B 2 186 THR 186 291 291 THR THR B . n B 2 187 LEU 187 292 292 LEU LEU B . n B 2 188 LYS 188 293 293 LYS LYS B . n B 2 189 VAL 189 294 294 VAL VAL B . n B 2 190 SER 190 295 295 SER SER B . n B 2 191 GLN 191 296 296 GLN GLN B . n B 2 192 ALA 192 297 297 ALA ALA B . n B 2 193 GLY 193 298 298 GLY GLY B . n B 2 194 LYS 194 299 299 LYS LYS B . n B 2 195 THR 195 300 300 THR THR B . n B 2 196 LEU 196 301 301 LEU LEU B . n B 2 197 CYS 197 302 302 CYS CYS B . n B 2 198 LEU 198 303 303 LEU LEU B . n B 2 199 SER 199 304 304 SER SER B . n B 2 200 GLY 200 305 305 GLY GLY B . n B 2 201 PHE 201 306 306 PHE PHE B . n B 2 202 MET 202 307 307 MET MET B . n B 2 203 GLY 203 308 308 GLY GLY B . n B 2 204 MET 204 309 309 MET MET B . n B 2 205 ASP 205 310 310 ASP ASP B . n B 2 206 ILE 206 311 311 ILE ILE B . n B 2 207 PRO 207 312 312 PRO PRO B . n B 2 208 PRO 208 313 313 PRO PRO B . n B 2 209 PRO 209 314 314 PRO PRO B . n B 2 210 SER 210 315 315 SER SER B . n B 2 211 GLY 211 316 316 GLY GLY B . n B 2 212 PRO 212 317 317 PRO PRO B . n B 2 213 LEU 213 318 318 LEU LEU B . n B 2 214 TRP 214 319 319 TRP TRP B . n B 2 215 ILE 215 320 320 ILE ILE B . n B 2 216 LEU 216 321 321 LEU LEU B . n B 2 217 GLY 217 322 322 GLY GLY B . n B 2 218 ASP 218 323 323 ASP ASP B . n B 2 219 VAL 219 324 324 VAL VAL B . n B 2 220 PHE 220 325 325 PHE PHE B . n B 2 221 ILE 221 326 326 ILE ILE B . n B 2 222 GLY 222 327 327 GLY GLY B . n B 2 223 ARG 223 328 328 ARG ARG B . n B 2 224 TYR 224 329 329 TYR TYR B . n B 2 225 TYR 225 330 330 TYR TYR B . n B 2 226 THR 226 331 331 THR THR B . n B 2 227 VAL 227 332 332 VAL VAL B . n B 2 228 PHE 228 333 333 PHE PHE B . n B 2 229 ASP 229 334 334 ASP ASP B . n B 2 230 ARG 230 335 335 ARG ARG B . n B 2 231 ASP 231 336 336 ASP ASP B . n B 2 232 ASN 232 337 337 ASN ASN B . n B 2 233 ASN 233 338 338 ASN ASN B . n B 2 234 ARG 234 339 339 ARG ARG B . n B 2 235 VAL 235 340 340 VAL VAL B . n B 2 236 GLY 236 341 341 GLY GLY B . n B 2 237 PHE 237 342 342 PHE PHE B . n B 2 238 ALA 238 343 343 ALA ALA B . n B 2 239 GLU 239 344 344 GLU GLU B . n B 2 240 ALA 240 345 345 ALA ALA B . n B 2 241 ALA 241 346 346 ALA ALA B . n B 2 242 ARG 242 347 347 ARG ARG B . n B 2 243 LEU 243 348 348 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 401 400 NAG NAG B . E 5 2S1 1 402 1 2S1 INH B . F 6 GOL 1 403 1 GOL GOL B . G 7 HOH 1 201 2 HOH HOH A . G 7 HOH 2 202 3 HOH HOH A . G 7 HOH 3 203 4 HOH HOH A . G 7 HOH 4 204 8 HOH HOH A . G 7 HOH 5 205 10 HOH HOH A . H 7 HOH 1 501 1 HOH HOH B . H 7 HOH 2 502 5 HOH HOH B . H 7 HOH 3 503 6 HOH HOH B . H 7 HOH 4 504 7 HOH HOH B . H 7 HOH 5 505 9 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 75 A ASN 70 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 94 B ASN 199 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 18740 ? 1 MORE -60 ? 1 'SSA (A^2)' 27620 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -38.5110000000 0.8660254038 -0.5000000000 0.0000000000 66.7030086503 0.0000000000 0.0000000000 -1.0000000000 41.9310000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-13 2 'Structure model' 1 1 2014-09-10 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' struct_asym 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_site 16 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_asym_id' 2 3 'Structure model' '_atom_site.auth_seq_id' 3 3 'Structure model' '_atom_site.label_asym_id' 4 3 'Structure model' '_atom_site.label_entity_id' 5 3 'Structure model' '_chem_comp.name' 6 3 'Structure model' '_chem_comp.type' 7 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 8 3 'Structure model' '_struct_conn.pdbx_dist_value' 9 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 3 'Structure model' '_struct_conn.pdbx_role' 11 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 11.0920 30.2840 20.4670 -0.4594 0.0748 -0.2532 -0.0806 -0.0266 0.1025 3.1277 3.2973 5.7146 -0.6773 0.2782 -0.6851 0.1170 -0.3238 0.2068 -0.4276 -0.3723 0.0289 0.5664 0.0776 0.2138 'X-RAY DIFFRACTION' 2 ? refined 13.4180 35.0890 0.5820 -0.4584 0.2624 -0.1541 0.0201 -0.0052 0.0642 2.3056 2.5782 4.3469 -0.4197 0.4160 -0.2115 0.0792 -0.3887 0.3095 0.5348 -0.1389 -0.1667 -0.2907 -0.1858 0.6522 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 97 '{ A|1 - A|97 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 106 B 346 '{ B|106 - B|346 }' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.11.4 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 11 ? ? 49.14 22.75 2 1 HIS A 45 ? ? -90.07 43.40 3 1 ASN A 70 ? ? -123.57 -77.54 4 1 PRO A 95 ? ? -73.27 -166.07 5 1 THR B 201 ? ? -76.13 -74.21 6 1 ALA B 204 ? ? -134.12 -74.45 7 1 ILE B 257 ? ? 176.76 150.18 8 1 GLN B 296 ? ? -173.86 138.24 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO -4 ? A PRO 1 2 1 Y 1 A ALA -3 ? A ALA 2 3 1 Y 1 A VAL -2 ? A VAL 3 4 1 Y 1 A THR -1 ? A THR 4 5 1 Y 1 A GLU 0 ? A GLU 5 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 C NAG 1 A NAG 99 n C 3 NAG 2 C NAG 2 A NAG 100 n C 3 BMA 3 C BMA 3 A BMA 101 n C 3 MAN 4 C MAN 4 A MAN 102 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 4 MAN C1 O1 3 BMA O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 ;2-bromo-N-[(2S,3S)-4-{[2-(2,4-dichlorophenyl)ethyl][3-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propanoyl]amino}-3-hydroxy-1-(3-phenoxyphenyl)butan-2-yl]-4,5-dimethoxybenzamide ; 2S1 6 GLYCEROL GOL 7 water HOH #