data_4ONM # _entry.id 4ONM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ONM RCSB RCSB084719 WWPDB D_1000084719 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4ONL . unspecified PDB 4ONN . unspecified # _pdbx_database_status.entry_id 4ONM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hodge, C.D.' 1 'Edwards, R.A.' 2 'Glover, J.N.M.' 3 # _citation.id primary _citation.title 'Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 10 _citation.page_first 1718 _citation.page_last 1728 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25909880 _citation.pdbx_database_id_DOI 10.1021/acschembio.5b00222 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hodge, C.D.' 1 primary 'Edwards, R.A.' 2 primary 'Markin, C.J.' 3 primary 'McDonald, D.' 4 primary 'Pulvino, M.' 5 primary 'Huen, M.S.' 6 primary 'Zhao, J.' 7 primary 'Spyracopoulos, L.' 8 primary 'Hendzel, M.J.' 9 primary 'Glover, J.N.' 10 # _cell.length_a 44.538 _cell.length_b 74.855 _cell.length_c 91.325 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4ONM _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4ONM _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-conjugating enzyme E2 variant 2' 17165.590 1 ? ? ? ? 2 polymer man 'Ubiquitin-conjugating enzyme E2 N' 17942.631 1 6.3.2.19 ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn '2-[(4-methylphenyl)sulfonyl]-5-nitrofuran' 267.258 1 ? ? ? ? 5 water nat water 18.015 212 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;DDVit 1, Enterocyte differentiation-associated factor 1, EDAF-1, Enterocyte differentiation-promoting factor 1, EDPF-1, MMS2 homolog, Vitamin D3-inducible protein ; 2 'Bendless-like ubiquitin-conjugating enzyme, Ubc13, UbcH13, Ubiquitin carrier protein N, Ubiquitin-protein ligase N' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSPEFMAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN ; ;GPLGSPEFMAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN ; A ? 2 'polypeptide(L)' no no ;GPLGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFM TKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI ; ;GPLGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFM TKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 PRO n 1 7 GLU n 1 8 PHE n 1 9 MET n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 THR n 1 14 GLY n 1 15 VAL n 1 16 LYS n 1 17 VAL n 1 18 PRO n 1 19 ARG n 1 20 ASN n 1 21 PHE n 1 22 ARG n 1 23 LEU n 1 24 LEU n 1 25 GLU n 1 26 GLU n 1 27 LEU n 1 28 GLU n 1 29 GLU n 1 30 GLY n 1 31 GLN n 1 32 LYS n 1 33 GLY n 1 34 VAL n 1 35 GLY n 1 36 ASP n 1 37 GLY n 1 38 THR n 1 39 VAL n 1 40 SER n 1 41 TRP n 1 42 GLY n 1 43 LEU n 1 44 GLU n 1 45 ASP n 1 46 ASP n 1 47 GLU n 1 48 ASP n 1 49 MET n 1 50 THR n 1 51 LEU n 1 52 THR n 1 53 ARG n 1 54 TRP n 1 55 THR n 1 56 GLY n 1 57 MET n 1 58 ILE n 1 59 ILE n 1 60 GLY n 1 61 PRO n 1 62 PRO n 1 63 ARG n 1 64 THR n 1 65 ASN n 1 66 TYR n 1 67 GLU n 1 68 ASN n 1 69 ARG n 1 70 ILE n 1 71 TYR n 1 72 SER n 1 73 LEU n 1 74 LYS n 1 75 VAL n 1 76 GLU n 1 77 CYS n 1 78 GLY n 1 79 PRO n 1 80 LYS n 1 81 TYR n 1 82 PRO n 1 83 GLU n 1 84 ALA n 1 85 PRO n 1 86 PRO n 1 87 SER n 1 88 VAL n 1 89 ARG n 1 90 PHE n 1 91 VAL n 1 92 THR n 1 93 LYS n 1 94 ILE n 1 95 ASN n 1 96 MET n 1 97 ASN n 1 98 GLY n 1 99 ILE n 1 100 ASN n 1 101 ASN n 1 102 SER n 1 103 SER n 1 104 GLY n 1 105 MET n 1 106 VAL n 1 107 ASP n 1 108 ALA n 1 109 ARG n 1 110 SER n 1 111 ILE n 1 112 PRO n 1 113 VAL n 1 114 LEU n 1 115 ALA n 1 116 LYS n 1 117 TRP n 1 118 GLN n 1 119 ASN n 1 120 SER n 1 121 TYR n 1 122 SER n 1 123 ILE n 1 124 LYS n 1 125 VAL n 1 126 VAL n 1 127 LEU n 1 128 GLN n 1 129 GLU n 1 130 LEU n 1 131 ARG n 1 132 ARG n 1 133 LEU n 1 134 MET n 1 135 MET n 1 136 SER n 1 137 LYS n 1 138 GLU n 1 139 ASN n 1 140 MET n 1 141 LYS n 1 142 LEU n 1 143 PRO n 1 144 GLN n 1 145 PRO n 1 146 PRO n 1 147 GLU n 1 148 GLY n 1 149 GLN n 1 150 THR n 1 151 TYR n 1 152 ASN n 1 153 ASN n 2 1 GLY n 2 2 PRO n 2 3 LEU n 2 4 GLY n 2 5 SER n 2 6 PRO n 2 7 GLU n 2 8 PHE n 2 9 MET n 2 10 ALA n 2 11 GLY n 2 12 LEU n 2 13 PRO n 2 14 ARG n 2 15 ARG n 2 16 ILE n 2 17 ILE n 2 18 LYS n 2 19 GLU n 2 20 THR n 2 21 GLN n 2 22 ARG n 2 23 LEU n 2 24 LEU n 2 25 ALA n 2 26 GLU n 2 27 PRO n 2 28 VAL n 2 29 PRO n 2 30 GLY n 2 31 ILE n 2 32 LYS n 2 33 ALA n 2 34 GLU n 2 35 PRO n 2 36 ASP n 2 37 GLU n 2 38 SER n 2 39 ASN n 2 40 ALA n 2 41 ARG n 2 42 TYR n 2 43 PHE n 2 44 HIS n 2 45 VAL n 2 46 VAL n 2 47 ILE n 2 48 ALA n 2 49 GLY n 2 50 PRO n 2 51 GLN n 2 52 ASP n 2 53 SER n 2 54 PRO n 2 55 PHE n 2 56 GLU n 2 57 GLY n 2 58 GLY n 2 59 THR n 2 60 PHE n 2 61 LYS n 2 62 LEU n 2 63 GLU n 2 64 LEU n 2 65 PHE n 2 66 LEU n 2 67 PRO n 2 68 GLU n 2 69 GLU n 2 70 TYR n 2 71 PRO n 2 72 MET n 2 73 ALA n 2 74 ALA n 2 75 PRO n 2 76 LYS n 2 77 VAL n 2 78 ARG n 2 79 PHE n 2 80 MET n 2 81 THR n 2 82 LYS n 2 83 ILE n 2 84 TYR n 2 85 HIS n 2 86 PRO n 2 87 ASN n 2 88 VAL n 2 89 ASP n 2 90 LYS n 2 91 LEU n 2 92 GLY n 2 93 ARG n 2 94 ILE n 2 95 CYS n 2 96 LEU n 2 97 ASP n 2 98 ILE n 2 99 LEU n 2 100 LYS n 2 101 ASP n 2 102 LYS n 2 103 TRP n 2 104 SER n 2 105 PRO n 2 106 ALA n 2 107 LEU n 2 108 GLN n 2 109 ILE n 2 110 ARG n 2 111 THR n 2 112 VAL n 2 113 LEU n 2 114 LEU n 2 115 SER n 2 116 ILE n 2 117 GLN n 2 118 ALA n 2 119 LEU n 2 120 LEU n 2 121 SER n 2 122 ALA n 2 123 PRO n 2 124 ASN n 2 125 PRO n 2 126 ASP n 2 127 ASP n 2 128 PRO n 2 129 LEU n 2 130 ALA n 2 131 ASN n 2 132 ASP n 2 133 VAL n 2 134 ALA n 2 135 GLU n 2 136 GLN n 2 137 TRP n 2 138 LYS n 2 139 THR n 2 140 ASN n 2 141 GLU n 2 142 ALA n 2 143 GLN n 2 144 ALA n 2 145 ILE n 2 146 GLU n 2 147 THR n 2 148 ALA n 2 149 ARG n 2 150 ALA n 2 151 TRP n 2 152 THR n 2 153 ARG n 2 154 LEU n 2 155 TYR n 2 156 ALA n 2 157 MET n 2 158 ASN n 2 159 ASN n 2 160 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'MMS2, UBE2V2, UEV2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pGEX6p1 ? ? 2 1 sample ? ? ? human ? 'BLU, UBE2N' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pGEX6p1 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UB2V2_HUMAN Q15819 1 ;MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSV RFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN ; 1 ? 2 UNP UBE2N_HUMAN P61088 2 ;MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI ; 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ONM A 9 ? 153 ? Q15819 1 ? 145 ? 1 145 2 2 4ONM B 9 ? 160 ? P61088 1 ? 152 ? 1 152 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ONM GLY A 1 ? UNP Q15819 ? ? 'EXPRESSION TAG' -7 1 1 4ONM PRO A 2 ? UNP Q15819 ? ? 'EXPRESSION TAG' -6 2 1 4ONM LEU A 3 ? UNP Q15819 ? ? 'EXPRESSION TAG' -5 3 1 4ONM GLY A 4 ? UNP Q15819 ? ? 'EXPRESSION TAG' -4 4 1 4ONM SER A 5 ? UNP Q15819 ? ? 'EXPRESSION TAG' -3 5 1 4ONM PRO A 6 ? UNP Q15819 ? ? 'EXPRESSION TAG' -2 6 1 4ONM GLU A 7 ? UNP Q15819 ? ? 'EXPRESSION TAG' -1 7 1 4ONM PHE A 8 ? UNP Q15819 ? ? 'EXPRESSION TAG' 0 8 2 4ONM GLY B 1 ? UNP P61088 ? ? 'EXPRESSION TAG' -7 9 2 4ONM PRO B 2 ? UNP P61088 ? ? 'EXPRESSION TAG' -6 10 2 4ONM LEU B 3 ? UNP P61088 ? ? 'EXPRESSION TAG' -5 11 2 4ONM GLY B 4 ? UNP P61088 ? ? 'EXPRESSION TAG' -4 12 2 4ONM SER B 5 ? UNP P61088 ? ? 'EXPRESSION TAG' -3 13 2 4ONM PRO B 6 ? UNP P61088 ? ? 'EXPRESSION TAG' -2 14 2 4ONM GLU B 7 ? UNP P61088 ? ? 'EXPRESSION TAG' -1 15 2 4ONM PHE B 8 ? UNP P61088 ? ? 'EXPRESSION TAG' 0 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 N2F non-polymer . '2-[(4-methylphenyl)sulfonyl]-5-nitrofuran' NSC697923 'C11 H9 N O5 S' 267.258 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4ONM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM sodium citrate, 15% PEG 8000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.pdbx_collection_date 2012-08-21 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03321 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08B1-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.03321 _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08B1-1 # _reflns.entry_id 4ONM _reflns.d_resolution_high 1.350 _reflns.d_resolution_low 50.000 _reflns.number_obs 67525 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_netI_over_sigmaI 16.500 _reflns.pdbx_chi_squared 1.000 _reflns.pdbx_redundancy 4.700 _reflns.percent_possible_obs 99.500 _reflns.B_iso_Wilson_estimate 16.790 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.350 1.370 ? ? ? 0.679 ? ? 1.012 4.000 ? 3291 98.600 1 1 1.370 1.400 ? ? ? 0.595 ? ? 0.938 4.000 ? 3288 98.700 2 1 1.400 1.430 ? ? ? 0.467 ? ? 0.925 4.000 ? 3331 98.800 3 1 1.430 1.450 ? ? ? 0.391 ? ? 0.935 4.000 ? 3299 99.000 4 1 1.450 1.490 ? ? ? 0.311 ? ? 1.000 4.000 ? 3348 99.200 5 1 1.490 1.520 ? ? ? 0.276 ? ? 0.985 4.000 ? 3306 99.000 6 1 1.520 1.560 ? ? ? 0.218 ? ? 1.007 4.000 ? 3348 99.400 7 1 1.560 1.600 ? ? ? 0.175 ? ? 0.972 4.100 ? 3329 99.300 8 1 1.600 1.650 ? ? ? 0.143 ? ? 1.092 4.100 ? 3333 99.600 9 1 1.650 1.700 ? ? ? 0.127 ? ? 1.064 4.100 ? 3378 99.600 10 1 1.700 1.760 ? ? ? 0.108 ? ? 1.034 4.100 ? 3350 99.700 11 1 1.760 1.830 ? ? ? 0.086 ? ? 1.086 4.100 ? 3340 99.800 12 1 1.830 1.920 ? ? ? 0.065 ? ? 1.022 4.100 ? 3392 99.900 13 1 1.920 2.020 ? ? ? 0.056 ? ? 1.034 4.100 ? 3398 99.900 14 1 2.020 2.140 ? ? ? 0.056 ? ? 1.047 4.100 ? 3405 99.900 15 1 2.140 2.310 ? ? ? 0.060 ? ? 0.960 4.100 ? 3396 99.800 16 1 2.310 2.540 ? ? ? 0.048 ? ? 0.983 4.700 ? 3419 99.900 17 1 2.540 2.910 ? ? ? 0.047 ? ? 1.079 8.100 ? 3448 100.000 18 1 2.910 3.660 ? ? ? 0.033 ? ? 0.926 8.000 ? 3482 100.000 19 1 3.660 50.000 ? ? ? 0.024 ? ? 0.946 7.000 ? 3644 99.200 20 1 # _refine.entry_id 4ONM _refine.ls_d_res_high 1.3500 _refine.ls_d_res_low 24.271 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.4400 _refine.ls_number_reflns_obs 67463 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_obs 0.1607 _refine.ls_R_factor_R_work 0.1590 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1923 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.3100 _refine.ls_number_reflns_R_free 3585 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.0600 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8944 _refine.B_iso_max 79.900 _refine.B_iso_min 9.150 _refine.pdbx_overall_phase_error 17.3000 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2295 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 2521 _refine_hist.d_res_high 1.3500 _refine_hist.d_res_low 24.271 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2475 0.013 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3377 1.440 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 359 0.095 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 450 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 973 13.111 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.35 1.3675 26 97.0000 2320 . 0.2441 0.2864 . 144 . 2464 . . 'X-RAY DIFFRACTION' 1.3675 1.3862 26 99.0000 2441 . 0.2164 0.2645 . 134 . 2575 . . 'X-RAY DIFFRACTION' 1.3862 1.4060 26 99.0000 2402 . 0.1945 0.2514 . 135 . 2537 . . 'X-RAY DIFFRACTION' 1.4060 1.4270 26 99.0000 2406 . 0.1734 0.2116 . 128 . 2534 . . 'X-RAY DIFFRACTION' 1.4270 1.4493 26 99.0000 2418 . 0.1655 0.2297 . 149 . 2567 . . 'X-RAY DIFFRACTION' 1.4493 1.4731 26 99.0000 2445 . 0.1524 0.1945 . 120 . 2565 . . 'X-RAY DIFFRACTION' 1.4731 1.4984 26 99.0000 2398 . 0.1496 0.1943 . 151 . 2549 . . 'X-RAY DIFFRACTION' 1.4984 1.5257 26 99.0000 2436 . 0.1452 0.1843 . 114 . 2550 . . 'X-RAY DIFFRACTION' 1.5257 1.5550 26 99.0000 2413 . 0.1361 0.1788 . 144 . 2557 . . 'X-RAY DIFFRACTION' 1.5550 1.5868 26 99.0000 2445 . 0.1318 0.2060 . 126 . 2571 . . 'X-RAY DIFFRACTION' 1.5868 1.6213 26 99.0000 2425 . 0.1261 0.1749 . 139 . 2564 . . 'X-RAY DIFFRACTION' 1.6213 1.6590 26 99.0000 2441 . 0.1218 0.1718 . 143 . 2584 . . 'X-RAY DIFFRACTION' 1.6590 1.7004 26 100.0000 2442 . 0.1233 0.1758 . 151 . 2593 . . 'X-RAY DIFFRACTION' 1.7004 1.7464 26 100.0000 2412 . 0.1241 0.1485 . 150 . 2562 . . 'X-RAY DIFFRACTION' 1.7464 1.7978 26 100.0000 2463 . 0.1260 0.1973 . 133 . 2596 . . 'X-RAY DIFFRACTION' 1.7978 1.8558 26 100.0000 2472 . 0.1313 0.1881 . 151 . 2623 . . 'X-RAY DIFFRACTION' 1.8558 1.9221 26 100.0000 2451 . 0.1307 0.1765 . 124 . 2575 . . 'X-RAY DIFFRACTION' 1.9221 1.9990 26 100.0000 2463 . 0.1403 0.1900 . 137 . 2600 . . 'X-RAY DIFFRACTION' 1.9990 2.0899 26 100.0000 2475 . 0.1372 0.1687 . 133 . 2608 . . 'X-RAY DIFFRACTION' 2.0899 2.2001 26 100.0000 2491 . 0.1515 0.2004 . 125 . 2616 . . 'X-RAY DIFFRACTION' 2.2001 2.3378 26 100.0000 2475 . 0.1530 0.1828 . 158 . 2633 . . 'X-RAY DIFFRACTION' 2.3378 2.5181 26 100.0000 2478 . 0.1643 0.2093 . 142 . 2620 . . 'X-RAY DIFFRACTION' 2.5181 2.7712 26 100.0000 2500 . 0.1803 0.2174 . 154 . 2654 . . 'X-RAY DIFFRACTION' 2.7712 3.1715 26 100.0000 2525 . 0.1827 0.2225 . 137 . 2662 . . 'X-RAY DIFFRACTION' 3.1715 3.9928 26 100.0000 2560 . 0.1671 0.2119 . 130 . 2690 . . 'X-RAY DIFFRACTION' 3.9928 24.271 26 100.0000 2681 . 0.1682 0.1513 . 133 . 2814 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4ONM _struct.title 'Crystal structure of human Mms2/Ubc13 - NSC697923' _struct.pdbx_descriptor 'Ubiquitin-conjugating enzyme E2 variant 2, Ubiquitin-conjugating enzyme E2 N (E.C.6.3.2.19)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ONM _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'E2 ubiquitin conjugating enzyme, E1, E3, ubiquitin, covalent adduct, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 18 ? GLY A 33 ? PRO A 10 GLY A 25 1 ? 16 HELX_P HELX_P2 2 ASP A 107 ? SER A 110 ? ASP A 99 SER A 102 5 ? 4 HELX_P HELX_P3 3 ILE A 111 ? LYS A 116 ? ILE A 103 LYS A 108 1 ? 6 HELX_P HELX_P4 4 SER A 122 ? MET A 135 ? SER A 114 MET A 127 1 ? 14 HELX_P HELX_P5 5 PRO B 13 ? GLU B 26 ? PRO B 5 GLU B 18 1 ? 14 HELX_P HELX_P6 6 LEU B 96 ? LYS B 100 ? LEU B 88 LYS B 92 5 ? 5 HELX_P HELX_P7 7 GLN B 108 ? ALA B 122 ? GLN B 100 ALA B 114 1 ? 15 HELX_P HELX_P8 8 VAL B 133 ? ASN B 140 ? VAL B 125 ASN B 132 1 ? 8 HELX_P HELX_P9 9 ASN B 140 ? ALA B 156 ? ASN B 132 ALA B 148 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_comp_id N2F _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C5 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id N2F _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.746 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 81 A . ? TYR 73 A PRO 82 A ? PRO 74 A 1 1.02 2 TYR 70 B . ? TYR 62 B PRO 71 B ? PRO 63 B 1 6.67 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 39 ? LEU A 43 ? VAL A 31 LEU A 35 A 2 ARG A 53 ? ILE A 59 ? ARG A 45 ILE A 51 A 3 ILE A 70 ? GLU A 76 ? ILE A 62 GLU A 68 A 4 SER A 87 ? PHE A 90 ? SER A 79 PHE A 82 B 1 ILE B 31 ? PRO B 35 ? ILE B 23 PRO B 27 B 2 TYR B 42 ? ALA B 48 ? TYR B 34 ALA B 40 B 3 THR B 59 ? PHE B 65 ? THR B 51 PHE B 57 B 4 LYS B 76 ? PHE B 79 ? LYS B 68 PHE B 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 42 ? N GLY A 34 O THR A 55 ? O THR A 47 A 2 3 N ILE A 58 ? N ILE A 50 O TYR A 71 ? O TYR A 63 A 3 4 N GLU A 76 ? N GLU A 68 O SER A 87 ? O SER A 79 B 1 2 N GLU B 34 ? N GLU B 26 O HIS B 44 ? O HIS B 36 B 2 3 N PHE B 43 ? N PHE B 35 O LEU B 64 ? O LEU B 56 B 3 4 N GLU B 63 ? N GLU B 55 O ARG B 78 ? O ARG B 70 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 201' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE N2F B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASN A 68 ? ASN A 60 . ? 4_455 ? 2 AC1 8 ILE A 70 ? ILE A 62 . ? 4_455 ? 3 AC1 8 GLY A 98 ? GLY A 90 . ? 1_555 ? 4 AC1 8 ILE A 99 ? ILE A 91 . ? 1_555 ? 5 AC1 8 ASN A 100 ? ASN A 92 . ? 1_555 ? 6 AC1 8 ASN A 101 ? ASN A 93 . ? 1_555 ? 7 AC1 8 HOH E . ? HOH A 379 . ? 4_455 ? 8 AC1 8 HOH E . ? HOH A 399 . ? 1_555 ? 9 AC2 11 PRO B 86 ? PRO B 78 . ? 1_555 ? 10 AC2 11 ASN B 87 ? ASN B 79 . ? 1_555 ? 11 AC2 11 VAL B 88 ? VAL B 80 . ? 1_555 ? 12 AC2 11 ASP B 89 ? ASP B 81 . ? 1_555 ? 13 AC2 11 ARG B 93 ? ARG B 85 . ? 1_555 ? 14 AC2 11 ILE B 94 ? ILE B 86 . ? 1_555 ? 15 AC2 11 CYS B 95 ? CYS B 87 . ? 1_555 ? 16 AC2 11 LEU B 129 ? LEU B 121 . ? 1_555 ? 17 AC2 11 ALA B 130 ? ALA B 122 . ? 1_555 ? 18 AC2 11 ASN B 131 ? ASN B 123 . ? 1_555 ? 19 AC2 11 HOH F . ? HOH B 305 . ? 1_555 ? # _atom_sites.entry_id 4ONM _atom_sites.fract_transf_matrix[1][1] 0.022453 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013359 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010950 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -7 ? ? ? A . n A 1 2 PRO 2 -6 ? ? ? A . n A 1 3 LEU 3 -5 ? ? ? A . n A 1 4 GLY 4 -4 ? ? ? A . n A 1 5 SER 5 -3 ? ? ? A . n A 1 6 PRO 6 -2 ? ? ? A . n A 1 7 GLU 7 -1 ? ? ? A . n A 1 8 PHE 8 0 ? ? ? A . n A 1 9 MET 9 1 ? ? ? A . n A 1 10 ALA 10 2 ? ? ? A . n A 1 11 VAL 11 3 ? ? ? A . n A 1 12 SER 12 4 ? ? ? A . n A 1 13 THR 13 5 ? ? ? A . n A 1 14 GLY 14 6 6 GLY GLY A . n A 1 15 VAL 15 7 7 VAL VAL A . n A 1 16 LYS 16 8 8 LYS LYS A . n A 1 17 VAL 17 9 9 VAL VAL A . n A 1 18 PRO 18 10 10 PRO PRO A . n A 1 19 ARG 19 11 11 ARG ARG A . n A 1 20 ASN 20 12 12 ASN ASN A . n A 1 21 PHE 21 13 13 PHE PHE A . n A 1 22 ARG 22 14 14 ARG ARG A . n A 1 23 LEU 23 15 15 LEU LEU A . n A 1 24 LEU 24 16 16 LEU LEU A . n A 1 25 GLU 25 17 17 GLU GLU A . n A 1 26 GLU 26 18 18 GLU GLU A . n A 1 27 LEU 27 19 19 LEU LEU A . n A 1 28 GLU 28 20 20 GLU GLU A . n A 1 29 GLU 29 21 21 GLU GLU A . n A 1 30 GLY 30 22 22 GLY GLY A . n A 1 31 GLN 31 23 23 GLN GLN A . n A 1 32 LYS 32 24 24 LYS LYS A . n A 1 33 GLY 33 25 25 GLY GLY A . n A 1 34 VAL 34 26 26 VAL VAL A . n A 1 35 GLY 35 27 27 GLY GLY A . n A 1 36 ASP 36 28 28 ASP ASP A . n A 1 37 GLY 37 29 29 GLY GLY A . n A 1 38 THR 38 30 30 THR THR A . n A 1 39 VAL 39 31 31 VAL VAL A . n A 1 40 SER 40 32 32 SER SER A . n A 1 41 TRP 41 33 33 TRP TRP A . n A 1 42 GLY 42 34 34 GLY GLY A . n A 1 43 LEU 43 35 35 LEU LEU A . n A 1 44 GLU 44 36 36 GLU GLU A . n A 1 45 ASP 45 37 37 ASP ASP A . n A 1 46 ASP 46 38 38 ASP ASP A . n A 1 47 GLU 47 39 39 GLU GLU A . n A 1 48 ASP 48 40 40 ASP ASP A . n A 1 49 MET 49 41 41 MET MET A . n A 1 50 THR 50 42 42 THR THR A . n A 1 51 LEU 51 43 43 LEU LEU A . n A 1 52 THR 52 44 44 THR THR A . n A 1 53 ARG 53 45 45 ARG ARG A . n A 1 54 TRP 54 46 46 TRP TRP A . n A 1 55 THR 55 47 47 THR THR A . n A 1 56 GLY 56 48 48 GLY GLY A . n A 1 57 MET 57 49 49 MET MET A . n A 1 58 ILE 58 50 50 ILE ILE A . n A 1 59 ILE 59 51 51 ILE ILE A . n A 1 60 GLY 60 52 52 GLY GLY A . n A 1 61 PRO 61 53 53 PRO PRO A . n A 1 62 PRO 62 54 54 PRO PRO A . n A 1 63 ARG 63 55 55 ARG ARG A . n A 1 64 THR 64 56 56 THR THR A . n A 1 65 ASN 65 57 57 ASN ASN A . n A 1 66 TYR 66 58 58 TYR TYR A . n A 1 67 GLU 67 59 59 GLU GLU A . n A 1 68 ASN 68 60 60 ASN ASN A . n A 1 69 ARG 69 61 61 ARG ARG A . n A 1 70 ILE 70 62 62 ILE ILE A . n A 1 71 TYR 71 63 63 TYR TYR A . n A 1 72 SER 72 64 64 SER SER A . n A 1 73 LEU 73 65 65 LEU LEU A . n A 1 74 LYS 74 66 66 LYS LYS A . n A 1 75 VAL 75 67 67 VAL VAL A . n A 1 76 GLU 76 68 68 GLU GLU A . n A 1 77 CYS 77 69 69 CYS CYS A . n A 1 78 GLY 78 70 70 GLY GLY A . n A 1 79 PRO 79 71 71 PRO PRO A . n A 1 80 LYS 80 72 72 LYS LYS A . n A 1 81 TYR 81 73 73 TYR TYR A . n A 1 82 PRO 82 74 74 PRO PRO A . n A 1 83 GLU 83 75 75 GLU GLU A . n A 1 84 ALA 84 76 76 ALA ALA A . n A 1 85 PRO 85 77 77 PRO PRO A . n A 1 86 PRO 86 78 78 PRO PRO A . n A 1 87 SER 87 79 79 SER SER A . n A 1 88 VAL 88 80 80 VAL VAL A . n A 1 89 ARG 89 81 81 ARG ARG A . n A 1 90 PHE 90 82 82 PHE PHE A . n A 1 91 VAL 91 83 83 VAL VAL A . n A 1 92 THR 92 84 84 THR THR A . n A 1 93 LYS 93 85 85 LYS LYS A . n A 1 94 ILE 94 86 86 ILE ILE A . n A 1 95 ASN 95 87 87 ASN ASN A . n A 1 96 MET 96 88 88 MET MET A . n A 1 97 ASN 97 89 89 ASN ASN A . n A 1 98 GLY 98 90 90 GLY GLY A . n A 1 99 ILE 99 91 91 ILE ILE A . n A 1 100 ASN 100 92 92 ASN ASN A . n A 1 101 ASN 101 93 93 ASN ASN A . n A 1 102 SER 102 94 94 SER SER A . n A 1 103 SER 103 95 95 SER SER A . n A 1 104 GLY 104 96 96 GLY GLY A . n A 1 105 MET 105 97 97 MET MET A . n A 1 106 VAL 106 98 98 VAL VAL A . n A 1 107 ASP 107 99 99 ASP ASP A . n A 1 108 ALA 108 100 100 ALA ALA A . n A 1 109 ARG 109 101 101 ARG ARG A . n A 1 110 SER 110 102 102 SER SER A . n A 1 111 ILE 111 103 103 ILE ILE A . n A 1 112 PRO 112 104 104 PRO PRO A . n A 1 113 VAL 113 105 105 VAL VAL A . n A 1 114 LEU 114 106 106 LEU LEU A . n A 1 115 ALA 115 107 107 ALA ALA A . n A 1 116 LYS 116 108 108 LYS LYS A . n A 1 117 TRP 117 109 109 TRP TRP A . n A 1 118 GLN 118 110 110 GLN GLN A . n A 1 119 ASN 119 111 111 ASN ASN A . n A 1 120 SER 120 112 112 SER SER A . n A 1 121 TYR 121 113 113 TYR TYR A . n A 1 122 SER 122 114 114 SER SER A . n A 1 123 ILE 123 115 115 ILE ILE A . n A 1 124 LYS 124 116 116 LYS LYS A . n A 1 125 VAL 125 117 117 VAL VAL A . n A 1 126 VAL 126 118 118 VAL VAL A . n A 1 127 LEU 127 119 119 LEU LEU A . n A 1 128 GLN 128 120 120 GLN GLN A . n A 1 129 GLU 129 121 121 GLU GLU A . n A 1 130 LEU 130 122 122 LEU LEU A . n A 1 131 ARG 131 123 123 ARG ARG A . n A 1 132 ARG 132 124 124 ARG ARG A . n A 1 133 LEU 133 125 125 LEU LEU A . n A 1 134 MET 134 126 126 MET MET A . n A 1 135 MET 135 127 127 MET MET A . n A 1 136 SER 136 128 128 SER SER A . n A 1 137 LYS 137 129 129 LYS LYS A . n A 1 138 GLU 138 130 130 GLU GLU A . n A 1 139 ASN 139 131 131 ASN ASN A . n A 1 140 MET 140 132 132 MET MET A . n A 1 141 LYS 141 133 133 LYS LYS A . n A 1 142 LEU 142 134 134 LEU LEU A . n A 1 143 PRO 143 135 135 PRO PRO A . n A 1 144 GLN 144 136 136 GLN GLN A . n A 1 145 PRO 145 137 137 PRO PRO A . n A 1 146 PRO 146 138 138 PRO PRO A . n A 1 147 GLU 147 139 139 GLU GLU A . n A 1 148 GLY 148 140 140 GLY GLY A . n A 1 149 GLN 149 141 141 GLN GLN A . n A 1 150 THR 150 142 142 THR THR A . n A 1 151 TYR 151 143 143 TYR TYR A . n A 1 152 ASN 152 144 144 ASN ASN A . n A 1 153 ASN 153 145 145 ASN ASN A . n B 2 1 GLY 1 -7 ? ? ? B . n B 2 2 PRO 2 -6 ? ? ? B . n B 2 3 LEU 3 -5 ? ? ? B . n B 2 4 GLY 4 -4 ? ? ? B . n B 2 5 SER 5 -3 ? ? ? B . n B 2 6 PRO 6 -2 ? ? ? B . n B 2 7 GLU 7 -1 ? ? ? B . n B 2 8 PHE 8 0 ? ? ? B . n B 2 9 MET 9 1 ? ? ? B . n B 2 10 ALA 10 2 2 ALA ALA B . n B 2 11 GLY 11 3 3 GLY GLY B . n B 2 12 LEU 12 4 4 LEU LEU B . n B 2 13 PRO 13 5 5 PRO PRO B . n B 2 14 ARG 14 6 6 ARG ARG B . n B 2 15 ARG 15 7 7 ARG ARG B . n B 2 16 ILE 16 8 8 ILE ILE B . n B 2 17 ILE 17 9 9 ILE ILE B . n B 2 18 LYS 18 10 10 LYS LYS B . n B 2 19 GLU 19 11 11 GLU GLU B . n B 2 20 THR 20 12 12 THR THR B . n B 2 21 GLN 21 13 13 GLN GLN B . n B 2 22 ARG 22 14 14 ARG ARG B . n B 2 23 LEU 23 15 15 LEU LEU B . n B 2 24 LEU 24 16 16 LEU LEU B . n B 2 25 ALA 25 17 17 ALA ALA B . n B 2 26 GLU 26 18 18 GLU GLU B . n B 2 27 PRO 27 19 19 PRO PRO B . n B 2 28 VAL 28 20 20 VAL VAL B . n B 2 29 PRO 29 21 21 PRO PRO B . n B 2 30 GLY 30 22 22 GLY GLY B . n B 2 31 ILE 31 23 23 ILE ILE B . n B 2 32 LYS 32 24 24 LYS LYS B . n B 2 33 ALA 33 25 25 ALA ALA B . n B 2 34 GLU 34 26 26 GLU GLU B . n B 2 35 PRO 35 27 27 PRO PRO B . n B 2 36 ASP 36 28 28 ASP ASP B . n B 2 37 GLU 37 29 29 GLU GLU B . n B 2 38 SER 38 30 30 SER SER B . n B 2 39 ASN 39 31 31 ASN ASN B . n B 2 40 ALA 40 32 32 ALA ALA B . n B 2 41 ARG 41 33 33 ARG ARG B . n B 2 42 TYR 42 34 34 TYR TYR B . n B 2 43 PHE 43 35 35 PHE PHE B . n B 2 44 HIS 44 36 36 HIS HIS B . n B 2 45 VAL 45 37 37 VAL VAL B . n B 2 46 VAL 46 38 38 VAL VAL B . n B 2 47 ILE 47 39 39 ILE ILE B . n B 2 48 ALA 48 40 40 ALA ALA B . n B 2 49 GLY 49 41 41 GLY GLY B . n B 2 50 PRO 50 42 42 PRO PRO B . n B 2 51 GLN 51 43 43 GLN GLN B . n B 2 52 ASP 52 44 44 ASP ASP B . n B 2 53 SER 53 45 45 SER SER B . n B 2 54 PRO 54 46 46 PRO PRO B . n B 2 55 PHE 55 47 47 PHE PHE B . n B 2 56 GLU 56 48 48 GLU GLU B . n B 2 57 GLY 57 49 49 GLY GLY B . n B 2 58 GLY 58 50 50 GLY GLY B . n B 2 59 THR 59 51 51 THR THR B . n B 2 60 PHE 60 52 52 PHE PHE B . n B 2 61 LYS 61 53 53 LYS LYS B . n B 2 62 LEU 62 54 54 LEU LEU B . n B 2 63 GLU 63 55 55 GLU GLU B . n B 2 64 LEU 64 56 56 LEU LEU B . n B 2 65 PHE 65 57 57 PHE PHE B . n B 2 66 LEU 66 58 58 LEU LEU B . n B 2 67 PRO 67 59 59 PRO PRO B . n B 2 68 GLU 68 60 60 GLU GLU B . n B 2 69 GLU 69 61 61 GLU GLU B . n B 2 70 TYR 70 62 62 TYR TYR B . n B 2 71 PRO 71 63 63 PRO PRO B . n B 2 72 MET 72 64 64 MET MET B . n B 2 73 ALA 73 65 65 ALA ALA B . n B 2 74 ALA 74 66 66 ALA ALA B . n B 2 75 PRO 75 67 67 PRO PRO B . n B 2 76 LYS 76 68 68 LYS LYS B . n B 2 77 VAL 77 69 69 VAL VAL B . n B 2 78 ARG 78 70 70 ARG ARG B . n B 2 79 PHE 79 71 71 PHE PHE B . n B 2 80 MET 80 72 72 MET MET B . n B 2 81 THR 81 73 73 THR THR B . n B 2 82 LYS 82 74 74 LYS LYS B . n B 2 83 ILE 83 75 75 ILE ILE B . n B 2 84 TYR 84 76 76 TYR TYR B . n B 2 85 HIS 85 77 77 HIS HIS B . n B 2 86 PRO 86 78 78 PRO PRO B . n B 2 87 ASN 87 79 79 ASN ASN B . n B 2 88 VAL 88 80 80 VAL VAL B . n B 2 89 ASP 89 81 81 ASP ASP B . n B 2 90 LYS 90 82 82 LYS LYS B . n B 2 91 LEU 91 83 83 LEU LEU B . n B 2 92 GLY 92 84 84 GLY GLY B . n B 2 93 ARG 93 85 85 ARG ARG B . n B 2 94 ILE 94 86 86 ILE ILE B . n B 2 95 CYS 95 87 87 CYS CYS B . n B 2 96 LEU 96 88 88 LEU LEU B . n B 2 97 ASP 97 89 89 ASP ASP B . n B 2 98 ILE 98 90 90 ILE ILE B . n B 2 99 LEU 99 91 91 LEU LEU B . n B 2 100 LYS 100 92 92 LYS LYS B . n B 2 101 ASP 101 93 93 ASP ASP B . n B 2 102 LYS 102 94 94 LYS LYS B . n B 2 103 TRP 103 95 95 TRP TRP B . n B 2 104 SER 104 96 96 SER SER B . n B 2 105 PRO 105 97 97 PRO PRO B . n B 2 106 ALA 106 98 98 ALA ALA B . n B 2 107 LEU 107 99 99 LEU LEU B . n B 2 108 GLN 108 100 100 GLN GLN B . n B 2 109 ILE 109 101 101 ILE ILE B . n B 2 110 ARG 110 102 102 ARG ARG B . n B 2 111 THR 111 103 103 THR THR B . n B 2 112 VAL 112 104 104 VAL VAL B . n B 2 113 LEU 113 105 105 LEU LEU B . n B 2 114 LEU 114 106 106 LEU LEU B . n B 2 115 SER 115 107 107 SER SER B . n B 2 116 ILE 116 108 108 ILE ILE B . n B 2 117 GLN 117 109 109 GLN GLN B . n B 2 118 ALA 118 110 110 ALA ALA B . n B 2 119 LEU 119 111 111 LEU LEU B . n B 2 120 LEU 120 112 112 LEU LEU B . n B 2 121 SER 121 113 113 SER SER B . n B 2 122 ALA 122 114 114 ALA ALA B . n B 2 123 PRO 123 115 115 PRO PRO B . n B 2 124 ASN 124 116 116 ASN ASN B . n B 2 125 PRO 125 117 117 PRO PRO B . n B 2 126 ASP 126 118 118 ASP ASP B . n B 2 127 ASP 127 119 119 ASP ASP B . n B 2 128 PRO 128 120 120 PRO PRO B . n B 2 129 LEU 129 121 121 LEU LEU B . n B 2 130 ALA 130 122 122 ALA ALA B . n B 2 131 ASN 131 123 123 ASN ASN B . n B 2 132 ASP 132 124 124 ASP ASP B . n B 2 133 VAL 133 125 125 VAL VAL B . n B 2 134 ALA 134 126 126 ALA ALA B . n B 2 135 GLU 135 127 127 GLU GLU B . n B 2 136 GLN 136 128 128 GLN GLN B . n B 2 137 TRP 137 129 129 TRP TRP B . n B 2 138 LYS 138 130 130 LYS LYS B . n B 2 139 THR 139 131 131 THR THR B . n B 2 140 ASN 140 132 132 ASN ASN B . n B 2 141 GLU 141 133 133 GLU GLU B . n B 2 142 ALA 142 134 134 ALA ALA B . n B 2 143 GLN 143 135 135 GLN GLN B . n B 2 144 ALA 144 136 136 ALA ALA B . n B 2 145 ILE 145 137 137 ILE ILE B . n B 2 146 GLU 146 138 138 GLU GLU B . n B 2 147 THR 147 139 139 THR THR B . n B 2 148 ALA 148 140 140 ALA ALA B . n B 2 149 ARG 149 141 141 ARG ARG B . n B 2 150 ALA 150 142 142 ALA ALA B . n B 2 151 TRP 151 143 143 TRP TRP B . n B 2 152 THR 152 144 144 THR THR B . n B 2 153 ARG 153 145 145 ARG ARG B . n B 2 154 LEU 154 146 146 LEU LEU B . n B 2 155 TYR 155 147 147 TYR TYR B . n B 2 156 ALA 156 148 148 ALA ALA B . n B 2 157 MET 157 149 149 MET MET B . n B 2 158 ASN 158 150 150 ASN ASN B . n B 2 159 ASN 159 151 ? ? ? B . n B 2 160 ILE 160 152 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 201 1 GOL GOL A . D 4 N2F 1 201 999 N2F N2F B . E 5 HOH 1 301 1 HOH HOH A . E 5 HOH 2 302 3 HOH HOH A . E 5 HOH 3 303 5 HOH HOH A . E 5 HOH 4 304 6 HOH HOH A . E 5 HOH 5 305 7 HOH HOH A . E 5 HOH 6 306 8 HOH HOH A . E 5 HOH 7 307 9 HOH HOH A . E 5 HOH 8 308 10 HOH HOH A . E 5 HOH 9 309 11 HOH HOH A . E 5 HOH 10 310 12 HOH HOH A . E 5 HOH 11 311 13 HOH HOH A . E 5 HOH 12 312 15 HOH HOH A . E 5 HOH 13 313 16 HOH HOH A . E 5 HOH 14 314 18 HOH HOH A . E 5 HOH 15 315 19 HOH HOH A . E 5 HOH 16 316 20 HOH HOH A . E 5 HOH 17 317 21 HOH HOH A . E 5 HOH 18 318 23 HOH HOH A . E 5 HOH 19 319 26 HOH HOH A . E 5 HOH 20 320 27 HOH HOH A . E 5 HOH 21 321 29 HOH HOH A . E 5 HOH 22 322 32 HOH HOH A . E 5 HOH 23 323 33 HOH HOH A . E 5 HOH 24 324 34 HOH HOH A . E 5 HOH 25 325 35 HOH HOH A . E 5 HOH 26 326 36 HOH HOH A . E 5 HOH 27 327 40 HOH HOH A . E 5 HOH 28 328 42 HOH HOH A . E 5 HOH 29 329 44 HOH HOH A . E 5 HOH 30 330 47 HOH HOH A . E 5 HOH 31 331 53 HOH HOH A . E 5 HOH 32 332 55 HOH HOH A . E 5 HOH 33 333 57 HOH HOH A . E 5 HOH 34 334 59 HOH HOH A . E 5 HOH 35 335 60 HOH HOH A . E 5 HOH 36 336 61 HOH HOH A . E 5 HOH 37 337 63 HOH HOH A . E 5 HOH 38 338 64 HOH HOH A . E 5 HOH 39 339 65 HOH HOH A . E 5 HOH 40 340 67 HOH HOH A . E 5 HOH 41 341 69 HOH HOH A . E 5 HOH 42 342 70 HOH HOH A . E 5 HOH 43 343 71 HOH HOH A . E 5 HOH 44 344 76 HOH HOH A . E 5 HOH 45 345 77 HOH HOH A . E 5 HOH 46 346 78 HOH HOH A . E 5 HOH 47 347 79 HOH HOH A . E 5 HOH 48 348 81 HOH HOH A . E 5 HOH 49 349 83 HOH HOH A . E 5 HOH 50 350 85 HOH HOH A . E 5 HOH 51 351 87 HOH HOH A . E 5 HOH 52 352 88 HOH HOH A . E 5 HOH 53 353 89 HOH HOH A . E 5 HOH 54 354 90 HOH HOH A . E 5 HOH 55 355 93 HOH HOH A . E 5 HOH 56 356 94 HOH HOH A . E 5 HOH 57 357 95 HOH HOH A . E 5 HOH 58 358 96 HOH HOH A . E 5 HOH 59 359 98 HOH HOH A . E 5 HOH 60 360 99 HOH HOH A . E 5 HOH 61 361 100 HOH HOH A . E 5 HOH 62 362 101 HOH HOH A . E 5 HOH 63 363 103 HOH HOH A . E 5 HOH 64 364 105 HOH HOH A . E 5 HOH 65 365 106 HOH HOH A . E 5 HOH 66 366 112 HOH HOH A . E 5 HOH 67 367 113 HOH HOH A . E 5 HOH 68 368 114 HOH HOH A . E 5 HOH 69 369 115 HOH HOH A . E 5 HOH 70 370 118 HOH HOH A . E 5 HOH 71 371 119 HOH HOH A . E 5 HOH 72 372 121 HOH HOH A . E 5 HOH 73 373 122 HOH HOH A . E 5 HOH 74 374 130 HOH HOH A . E 5 HOH 75 375 133 HOH HOH A . E 5 HOH 76 376 134 HOH HOH A . E 5 HOH 77 377 135 HOH HOH A . E 5 HOH 78 378 137 HOH HOH A . E 5 HOH 79 379 138 HOH HOH A . E 5 HOH 80 380 140 HOH HOH A . E 5 HOH 81 381 142 HOH HOH A . E 5 HOH 82 382 143 HOH HOH A . E 5 HOH 83 383 144 HOH HOH A . E 5 HOH 84 384 151 HOH HOH A . E 5 HOH 85 385 153 HOH HOH A . E 5 HOH 86 386 155 HOH HOH A . E 5 HOH 87 387 156 HOH HOH A . E 5 HOH 88 388 162 HOH HOH A . E 5 HOH 89 389 164 HOH HOH A . E 5 HOH 90 390 165 HOH HOH A . E 5 HOH 91 391 171 HOH HOH A . E 5 HOH 92 392 172 HOH HOH A . E 5 HOH 93 393 174 HOH HOH A . E 5 HOH 94 394 175 HOH HOH A . E 5 HOH 95 395 181 HOH HOH A . E 5 HOH 96 396 183 HOH HOH A . E 5 HOH 97 397 186 HOH HOH A . E 5 HOH 98 398 191 HOH HOH A . E 5 HOH 99 399 192 HOH HOH A . E 5 HOH 100 400 193 HOH HOH A . E 5 HOH 101 401 194 HOH HOH A . E 5 HOH 102 402 201 HOH HOH A . E 5 HOH 103 403 202 HOH HOH A . E 5 HOH 104 404 204 HOH HOH A . E 5 HOH 105 405 205 HOH HOH A . E 5 HOH 106 406 206 HOH HOH A . E 5 HOH 107 407 209 HOH HOH A . E 5 HOH 108 408 211 HOH HOH A . E 5 HOH 109 409 213 HOH HOH A . E 5 HOH 110 410 214 HOH HOH A . E 5 HOH 111 411 215 HOH HOH A . E 5 HOH 112 412 216 HOH HOH A . F 5 HOH 1 301 2 HOH HOH B . F 5 HOH 2 302 4 HOH HOH B . F 5 HOH 3 303 14 HOH HOH B . F 5 HOH 4 304 17 HOH HOH B . F 5 HOH 5 305 22 HOH HOH B . F 5 HOH 6 306 24 HOH HOH B . F 5 HOH 7 307 25 HOH HOH B . F 5 HOH 8 308 28 HOH HOH B . F 5 HOH 9 309 30 HOH HOH B . F 5 HOH 10 310 37 HOH HOH B . F 5 HOH 11 311 38 HOH HOH B . F 5 HOH 12 312 39 HOH HOH B . F 5 HOH 13 313 43 HOH HOH B . F 5 HOH 14 314 45 HOH HOH B . F 5 HOH 15 315 46 HOH HOH B . F 5 HOH 16 316 48 HOH HOH B . F 5 HOH 17 317 49 HOH HOH B . F 5 HOH 18 318 50 HOH HOH B . F 5 HOH 19 319 51 HOH HOH B . F 5 HOH 20 320 52 HOH HOH B . F 5 HOH 21 321 54 HOH HOH B . F 5 HOH 22 322 56 HOH HOH B . F 5 HOH 23 323 58 HOH HOH B . F 5 HOH 24 324 62 HOH HOH B . F 5 HOH 25 325 66 HOH HOH B . F 5 HOH 26 326 68 HOH HOH B . F 5 HOH 27 327 73 HOH HOH B . F 5 HOH 28 328 74 HOH HOH B . F 5 HOH 29 329 75 HOH HOH B . F 5 HOH 30 330 80 HOH HOH B . F 5 HOH 31 331 82 HOH HOH B . F 5 HOH 32 332 84 HOH HOH B . F 5 HOH 33 333 86 HOH HOH B . F 5 HOH 34 334 91 HOH HOH B . F 5 HOH 35 335 92 HOH HOH B . F 5 HOH 36 336 97 HOH HOH B . F 5 HOH 37 337 102 HOH HOH B . F 5 HOH 38 338 104 HOH HOH B . F 5 HOH 39 339 107 HOH HOH B . F 5 HOH 40 340 108 HOH HOH B . F 5 HOH 41 341 109 HOH HOH B . F 5 HOH 42 342 110 HOH HOH B . F 5 HOH 43 343 111 HOH HOH B . F 5 HOH 44 344 116 HOH HOH B . F 5 HOH 45 345 117 HOH HOH B . F 5 HOH 46 346 120 HOH HOH B . F 5 HOH 47 347 123 HOH HOH B . F 5 HOH 48 348 124 HOH HOH B . F 5 HOH 49 349 125 HOH HOH B . F 5 HOH 50 350 126 HOH HOH B . F 5 HOH 51 351 127 HOH HOH B . F 5 HOH 52 352 128 HOH HOH B . F 5 HOH 53 353 129 HOH HOH B . F 5 HOH 54 354 131 HOH HOH B . F 5 HOH 55 355 132 HOH HOH B . F 5 HOH 56 356 136 HOH HOH B . F 5 HOH 57 357 139 HOH HOH B . F 5 HOH 58 358 141 HOH HOH B . F 5 HOH 59 359 145 HOH HOH B . F 5 HOH 60 360 146 HOH HOH B . F 5 HOH 61 361 147 HOH HOH B . F 5 HOH 62 362 148 HOH HOH B . F 5 HOH 63 363 149 HOH HOH B . F 5 HOH 64 364 150 HOH HOH B . F 5 HOH 65 365 152 HOH HOH B . F 5 HOH 66 366 154 HOH HOH B . F 5 HOH 67 367 157 HOH HOH B . F 5 HOH 68 368 158 HOH HOH B . F 5 HOH 69 369 159 HOH HOH B . F 5 HOH 70 370 160 HOH HOH B . F 5 HOH 71 371 161 HOH HOH B . F 5 HOH 72 372 163 HOH HOH B . F 5 HOH 73 373 166 HOH HOH B . F 5 HOH 74 374 167 HOH HOH B . F 5 HOH 75 375 168 HOH HOH B . F 5 HOH 76 376 169 HOH HOH B . F 5 HOH 77 377 170 HOH HOH B . F 5 HOH 78 378 173 HOH HOH B . F 5 HOH 79 379 176 HOH HOH B . F 5 HOH 80 380 177 HOH HOH B . F 5 HOH 81 381 178 HOH HOH B . F 5 HOH 82 382 179 HOH HOH B . F 5 HOH 83 383 180 HOH HOH B . F 5 HOH 84 384 182 HOH HOH B . F 5 HOH 85 385 184 HOH HOH B . F 5 HOH 86 386 185 HOH HOH B . F 5 HOH 87 387 187 HOH HOH B . F 5 HOH 88 388 188 HOH HOH B . F 5 HOH 89 389 189 HOH HOH B . F 5 HOH 90 390 190 HOH HOH B . F 5 HOH 91 391 195 HOH HOH B . F 5 HOH 92 392 196 HOH HOH B . F 5 HOH 93 393 197 HOH HOH B . F 5 HOH 94 394 198 HOH HOH B . F 5 HOH 95 395 200 HOH HOH B . F 5 HOH 96 396 203 HOH HOH B . F 5 HOH 97 397 207 HOH HOH B . F 5 HOH 98 398 208 HOH HOH B . F 5 HOH 99 399 210 HOH HOH B . F 5 HOH 100 400 212 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1720 ? 1 MORE -10 ? 1 'SSA (A^2)' 15180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-06 2 'Structure model' 1 1 2015-08-05 3 'Structure model' 1 2 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.8.3_1479 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_entry_details.entry_id 4ONM _pdbx_entry_details.nonpolymer_details ;THE COMPOUND N2F LOSES THE 4-METHYLBENZENE-SULFINIC ACID GROUP ON INERACTING WITH UBC13 AND THE REMAINING PART OF N2F FORMS A COVALENT BOND WITH THE SG ATOM OF CYS B87 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 92 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -132.51 _pdbx_validate_torsion.psi -108.53 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -7 ? A GLY 1 2 1 Y 1 A PRO -6 ? A PRO 2 3 1 Y 1 A LEU -5 ? A LEU 3 4 1 Y 1 A GLY -4 ? A GLY 4 5 1 Y 1 A SER -3 ? A SER 5 6 1 Y 1 A PRO -2 ? A PRO 6 7 1 Y 1 A GLU -1 ? A GLU 7 8 1 Y 1 A PHE 0 ? A PHE 8 9 1 Y 1 A MET 1 ? A MET 9 10 1 Y 1 A ALA 2 ? A ALA 10 11 1 Y 1 A VAL 3 ? A VAL 11 12 1 Y 1 A SER 4 ? A SER 12 13 1 Y 1 A THR 5 ? A THR 13 14 1 Y 1 B GLY -7 ? B GLY 1 15 1 Y 1 B PRO -6 ? B PRO 2 16 1 Y 1 B LEU -5 ? B LEU 3 17 1 Y 1 B GLY -4 ? B GLY 4 18 1 Y 1 B SER -3 ? B SER 5 19 1 Y 1 B PRO -2 ? B PRO 6 20 1 Y 1 B GLU -1 ? B GLU 7 21 1 Y 1 B PHE 0 ? B PHE 8 22 1 Y 1 B MET 1 ? B MET 9 23 1 Y 1 B ASN 151 ? B ASN 159 24 1 Y 1 B ILE 152 ? B ILE 160 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 '2-[(4-methylphenyl)sulfonyl]-5-nitrofuran' N2F 5 water HOH #