data_4P3U # _entry.id 4P3U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P3U pdb_00004p3u 10.2210/pdb4p3u/pdb WWPDB D_1000200648 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-04 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' diffrn_source 5 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P3U _pdbx_database_status.recvd_initial_deposition_date 2014-03-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4P20 PDB . unspecified 4P3S PDB . unspecified 4P3T PDB . unspecified 4P43 PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Koganei, M.' 2 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher . _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country ? _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full . _citation.journal_issue . _citation.journal_volume . _citation.language . _citation.page_first . _citation.page_last . _citation.title 'Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)' _citation.year . _citation.database_id_CSD . _citation.pdbx_database_id_DOI . _citation.pdbx_database_id_PubMed . _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Koganei, M.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*UP*GP*CP*GP*UP*CP*UP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7411.264 4 ? ? ? ? 2 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UUGCGUCUCG(5BU)CGACGAAGUCGC' _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCUCGUCGACGAAGUCGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 U n 1 9 C n 1 10 G n 1 11 5BU n 1 12 C n 1 13 G n 1 14 A n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 5BU 11 11 11 5BU 5BU A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 ? ? ? B . n B 1 2 U 2 25 25 U U B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 U 8 31 31 U U B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 5BU 11 34 34 5BU 5BU B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 A 14 37 37 A A B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n C 1 1 U 1 1 ? ? ? C . n C 1 2 U 2 2 2 U U C . n C 1 3 G 3 3 3 G G C . n C 1 4 C 4 4 4 C C C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 C 7 7 7 C C C . n C 1 8 U 8 8 8 U U C . n C 1 9 C 9 9 9 C C C . n C 1 10 G 10 10 10 G G C . n C 1 11 5BU 11 11 11 5BU 5BU C . n C 1 12 C 12 12 12 C C C . n C 1 13 G 13 13 13 G G C . n C 1 14 A 14 14 14 A A C . n C 1 15 C 15 15 15 C C C . n C 1 16 G 16 16 16 G G C . n C 1 17 A 17 17 17 A A C . n C 1 18 A 18 18 18 A A C . n C 1 19 G 19 19 19 G G C . n C 1 20 U 20 20 20 U U C . n C 1 21 C 21 21 21 C C C . n C 1 22 G 22 22 22 G G C . n C 1 23 C 23 23 23 C C C . n D 1 1 U 1 24 ? ? ? D . n D 1 2 U 2 25 ? ? ? D . n D 1 3 G 3 26 26 G G D . n D 1 4 C 4 27 27 C C D . n D 1 5 G 5 28 28 G G D . n D 1 6 U 6 29 29 U U D . n D 1 7 C 7 30 30 C C D . n D 1 8 U 8 31 31 U U D . n D 1 9 C 9 32 32 C C D . n D 1 10 G 10 33 33 G G D . n D 1 11 5BU 11 34 34 5BU 5BU D . n D 1 12 C 12 35 35 C C D . n D 1 13 G 13 36 36 G G D . n D 1 14 A 14 37 37 A A D . n D 1 15 C 15 38 38 C C D . n D 1 16 G 16 39 39 G G D . n D 1 17 A 17 40 40 A A D . n D 1 18 A 18 41 41 A A D . n D 1 19 G 19 42 42 G G D . n D 1 20 U 20 43 43 U U D . n D 1 21 C 21 44 44 C C D . n D 1 22 G 22 45 45 G G D . n D 1 23 C 23 46 46 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 106 HOH HOH A . E 2 HOH 2 102 101 HOH HOH A . E 2 HOH 3 103 104 HOH HOH A . E 2 HOH 4 104 111 HOH HOH A . E 2 HOH 5 105 114 HOH HOH A . F 2 HOH 1 101 102 HOH HOH B . F 2 HOH 2 102 103 HOH HOH B . F 2 HOH 3 103 105 HOH HOH B . F 2 HOH 4 104 107 HOH HOH B . G 2 HOH 1 101 108 HOH HOH C . G 2 HOH 2 102 109 HOH HOH C . G 2 HOH 3 103 110 HOH HOH C . G 2 HOH 4 104 113 HOH HOH C . H 2 HOH 1 101 112 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' . . . . . . . . . . . CrystalClear . . . . 1 ? refinement . . . . . . . . . . . CNS . . . . 2 ? 'data extraction' . . . . . . . . . . . PDB_EXTRACT . . . 3.14 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 5 # _cell.length_a 155.380 _cell.length_b 32.730 _cell.length_c 80.990 _cell.angle_alpha 90.000 _cell.angle_beta 117.060 _cell.angle_gamma 90.000 _cell.entry_id 4P3U _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P3U _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M . # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P3U _exptl.crystals_number 1 _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 60.66 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'Sodium Cacodylate, Spermine tetrahydrochloride, PEG3350, Sodium Cacodylate' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2013-02-18 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4P3U _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 3.000 _reflns.d_resolution_low 25.600 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 7533 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 99.400 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 3.530 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 7.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared 0.980 _reflns.pdbx_scaling_rejects 201 _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all 26787 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.000 3.110 . 2.200 2635 . . 729 . 100.000 . . . . 0.377 . . . . . . . . 3.570 . 1.130 . . . . 33 1 1 3.110 3.230 . 2.600 2732 . . 758 . 99.900 . . . . 0.242 . . . . . . . . 3.590 . 1.150 . . . . 13 2 1 3.230 3.380 . 3.300 2687 . . 745 . 100.000 . . . . 0.156 . . . . . . . . 3.590 . 1.060 . . . . 13 3 1 3.380 3.560 . 3.400 2679 . . 739 . 99.900 . . . . 0.181 . . . . . . . . 3.610 . 1.060 . . . . 8 4 1 3.560 3.780 . 4.300 2687 . . 746 . 99.900 . . . . 0.126 . . . . . . . . 3.580 . 0.940 . . . . 15 5 1 3.780 4.070 . 5.700 2715 . . 756 . 99.900 . . . . 0.111 . . . . . . . . 3.560 . 0.960 . . . . 20 6 1 4.070 4.480 . 7.000 2685 . . 755 . 99.900 . . . . 0.106 . . . . . . . . 3.530 . 0.920 . . . . 17 7 1 4.480 5.120 . 8.100 2718 . . 764 . 100.000 . . . . 0.088 . . . . . . . . 3.540 . 0.840 . . . . 15 8 1 5.120 6.430 . 11.800 2724 . . 771 . 99.900 . . . . 0.069 . . . . . . . . 3.510 . 0.810 . . . . 16 9 1 6.430 25.600 . 24.300 2525 . . 770 . 95.300 . . . . 0.037 . . . . . . . . 3.210 . 0.980 . . . . 51 10 1 # _refine.aniso_B[1][1] -23.4910 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 54.4640 _refine.aniso_B[2][2] -1.7390 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 25.2310 _refine.B_iso_max 224.930 _refine.B_iso_mean 142.0724 _refine.B_iso_min 56.800 _refine.correlation_coeff_Fo_to_Fc . _refine.correlation_coeff_Fo_to_Fc_free . _refine.details . _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4P3U _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 3.0000 _refine.ls_d_res_low 100.0000 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 7532 _refine.ls_number_reflns_R_free 808 _refine.ls_number_reflns_R_work 6724 _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 99.2000 _refine.ls_percent_reflns_R_free 10.6000 _refine.ls_R_factor_all . _refine.ls_R_factor_obs . _refine.ls_R_factor_R_free 0.3024 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.2951 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B . _refine.overall_SU_ML . _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set 0.6361 _refine.solvent_model_details . _refine.solvent_model_param_bsol 69.0349 _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values . _refine.pdbx_R_Free_selection_details . _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R . _refine.pdbx_overall_ESU_R_Free . _refine.pdbx_solvent_vdw_probe_radii . _refine.pdbx_solvent_ion_probe_radii . _refine.pdbx_solvent_shrinkage_radii . _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error . _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0000 _refine_hist.d_res_low 100.0000 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1846 _refine_hist.pdbx_number_residues_total 86 _refine_hist.pdbx_B_iso_mean_solvent 80.90 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1832 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.008 . . . c_bond_d . . 'X-RAY DIFFRACTION' . 1.287 . . . c_angle_d . . 'X-RAY DIFFRACTION' . 0.000 1.500 . . c_mcbond_it . . 'X-RAY DIFFRACTION' . 1.282 2.000 . . c_scbond_it . . 'X-RAY DIFFRACTION' . 0.000 2.000 . . c_mcangle_it . . 'X-RAY DIFFRACTION' . 2.110 2.500 . . c_scangle_it . . # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 3.00 3.11 . . 79 649 100.0000 . . . 0.5907 . 0.6207 . . . . . . . . 'X-RAY DIFFRACTION' 3.11 3.23 . . 77 687 99.9000 . . . 0.6184 . 0.5300 . . . . . . . . 'X-RAY DIFFRACTION' 3.23 3.38 . . 80 662 100.0000 . . . 0.5075 . 0.4564 . . . . . . . . 'X-RAY DIFFRACTION' 3.56 3.78 . . 79 662 99.9000 . . . 0.3538 . 0.4021 . . . . . . . . 'X-RAY DIFFRACTION' 3.78 4.07 . . 84 666 99.9000 . . . 0.3690 . 0.3543 . . . . . . . . 'X-RAY DIFFRACTION' 4.07 4.48 . . 83 671 99.9000 . . . 0.2625 . 0.2800 . . . . . . . . 'X-RAY DIFFRACTION' 4.48 5.13 . . 78 677 99.9000 . . . 0.2367 . 0.2495 . . . . . . . . 'X-RAY DIFFRACTION' 5.13 6.46 . . 89 675 99.9000 . . . 0.2737 . 0.2367 . . . . . . . . 'X-RAY DIFFRACTION' 6.46 25.6 . . 77 702 99.9000 . . . 0.2143 . 0.1965 . . . . . . . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 bru.param ? 'X-RAY DIFFRACTION' 2 dna-rna_free.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param ? # _struct.entry_id 4P3U _struct.title 'Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P3U _struct_keywords.text 'ribosome, antibiotic-resistance, aminoglycoside, decoding, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4P3U _struct_ref.pdbx_db_accession 4P3U _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4P3U A 1 ? 23 ? 4P3U 1 ? 23 ? 1 23 2 1 4P3U B 1 ? 23 ? 4P3U 24 ? 46 ? 24 46 3 1 4P3U C 1 ? 23 ? 4P3U 1 ? 23 ? 1 23 4 1 4P3U D 1 ? 23 ? 4P3U 24 ? 46 ? 24 46 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE -16 ? 1 'SSA (A^2)' 8440 ? 2 'ABSA (A^2)' 1950 ? 2 MORE -18 ? 2 'SSA (A^2)' 8450 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 10 "O3'" ? ? ? 1_555 A 5BU 11 P ? ? A G 10 A 5BU 11 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A 5BU 11 "O3'" ? ? ? 1_555 A C 12 P ? ? A 5BU 11 A C 12 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? B G 10 "O3'" ? ? ? 1_555 B 5BU 11 P ? ? B G 33 B 5BU 34 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale4 covale both ? B 5BU 11 "O3'" ? ? ? 1_555 B C 12 P ? ? B 5BU 34 B C 35 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale5 covale both ? C G 10 "O3'" ? ? ? 1_555 C 5BU 11 P ? ? C G 10 C 5BU 11 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale6 covale both ? C 5BU 11 "O3'" ? ? ? 1_555 C C 12 P ? ? C 5BU 11 C C 12 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale7 covale both ? D G 10 "O3'" ? ? ? 1_555 D 5BU 11 P ? ? D G 33 D 5BU 34 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale8 covale both ? D 5BU 11 "O3'" ? ? ? 1_555 D C 12 P ? ? D 5BU 34 D C 35 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 17 N6 ? ? A U 8 B A 40 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog8 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 5BU 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A 5BU 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 5BU 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A 5BU 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 14 N1 ? ? ? 1_555 B 5BU 11 N3 ? ? A A 14 B 5BU 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 14 N6 ? ? ? 1_555 B 5BU 11 O4 ? ? A A 14 B 5BU 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 17 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 17 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 17 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 17 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog36 hydrog ? ? A U 20 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog37 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 23 N3 ? ? C G 3 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 23 O2 ? ? C G 3 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 23 N4 ? ? C G 3 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 22 N1 ? ? C C 4 D G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 22 O6 ? ? C C 4 D G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 22 N2 ? ? C C 4 D G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 5 D C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 5 D C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 5 D C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C U 6 O4 ? ? ? 1_555 D U 20 N3 ? ? C U 6 D U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog56 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 19 O6 ? ? C C 7 D G 42 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog57 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 17 N1 ? ? C U 8 D A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 17 N6 ? ? C U 8 D A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 16 N1 ? ? C C 9 D G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 16 O6 ? ? C C 9 D G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 16 N2 ? ? C C 9 D G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 10 D C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 10 D C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 10 D C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C 5BU 11 N3 ? ? ? 1_555 D A 14 N1 ? ? C 5BU 11 D A 37 1_555 ? ? ? ? ? ? '5BU-A MISPAIR' ? ? ? hydrog66 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 13 O6 ? ? C C 12 D G 36 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog67 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 13 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 13 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 13 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C A 14 N6 ? ? ? 1_555 D 5BU 11 O4 ? ? C A 14 D 5BU 34 1_555 ? ? ? ? ? ? 'A-5BU MISPAIR' ? ? ? hydrog71 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 15 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 15 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 15 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 16 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 16 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 16 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C A 17 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 17 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C A 17 N6 ? ? ? 1_555 D U 8 O4 ? ? C A 17 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 19 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 19 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C G 19 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 19 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C G 19 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 19 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C U 20 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 20 D U 29 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog83 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 21 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 21 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 21 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C G 22 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C G 22 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C G 22 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C C 23 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 23 D G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C C 23 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 23 D G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C C 23 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 23 D G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 B G 33 ? ? C4 B G 33 ? ? 1.305 1.350 -0.045 0.007 N 2 1 N3 D G 39 ? ? C4 D G 39 ? ? 1.280 1.350 -0.070 0.007 N 3 1 N3 D G 45 ? ? C4 D G 45 ? ? 1.398 1.350 0.048 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" D C 38 ? ? "C4'" D C 38 ? ? "C3'" D C 38 ? ? 126.11 116.00 10.11 1.60 N 2 1 "C5'" D C 38 ? ? "C4'" D C 38 ? ? "O4'" D C 38 ? ? 115.78 109.80 5.98 0.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 23 ? ? 0.062 'SIDE CHAIN' 2 1 C B 27 ? ? 0.067 'SIDE CHAIN' 3 1 U B 29 ? ? 0.087 'SIDE CHAIN' 4 1 U D 43 ? ? 0.060 'SIDE CHAIN' # _phasing.method MR # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 104 ? 6.21 . 2 1 O ? C HOH 101 ? 5.85 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 A U 2 ? A U 2 3 1 Y 1 B U 24 ? B U 1 4 1 Y 1 C U 1 ? C U 1 5 1 Y 1 D U 24 ? D U 1 6 1 Y 1 D U 25 ? D U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 U OP3 O N N 148 U P P N N 149 U OP1 O N N 150 U OP2 O N N 151 U "O5'" O N N 152 U "C5'" C N N 153 U "C4'" C N R 154 U "O4'" O N N 155 U "C3'" C N S 156 U "O3'" O N N 157 U "C2'" C N R 158 U "O2'" O N N 159 U "C1'" C N R 160 U N1 N N N 161 U C2 C N N 162 U O2 O N N 163 U N3 N N N 164 U C4 C N N 165 U O4 O N N 166 U C5 C N N 167 U C6 C N N 168 U HOP3 H N N 169 U HOP2 H N N 170 U "H5'" H N N 171 U "H5''" H N N 172 U "H4'" H N N 173 U "H3'" H N N 174 U "HO3'" H N N 175 U "H2'" H N N 176 U "HO2'" H N N 177 U "H1'" H N N 178 U H3 H N N 179 U H5 H N N 180 U H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P3U 'double helix' 4P3U 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 5 1_555 B C 21 1_555 -0.246 -0.044 -0.001 6.295 6.525 3.061 1 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A C 7 1_555 B G 19 1_555 0.051 -0.029 0.608 1.720 -10.746 -5.670 2 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A U 8 1_555 B A 17 1_555 0.285 0.492 -0.206 14.026 -23.750 -13.532 3 A_U8:A40_B A 8 ? B 40 ? ? ? 1 A C 9 1_555 B G 16 1_555 0.293 -0.104 0.406 6.663 -7.948 -3.150 4 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.158 0.037 0.356 -10.235 -2.107 -1.735 5 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A 5BU 11 1_555 B A 14 1_555 -0.262 -0.460 -0.301 -6.888 -11.083 -11.363 6 A_5BU11:A37_B A 11 ? B 37 ? 20 1 1 A C 12 1_555 B G 13 1_555 0.185 0.199 0.058 -0.306 -7.158 -3.913 7 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 0.341 0.037 0.003 -5.011 -8.627 -4.657 8 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A A 14 1_555 B 5BU 11 1_555 -0.250 -0.019 0.306 1.628 -11.572 -16.867 9 A_A14:5BU34_B A 14 ? B 34 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.041 0.199 0.450 -2.295 -18.951 4.484 10 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 0.109 -0.087 -0.449 -9.793 -10.982 -2.463 11 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A A 17 1_555 B U 8 1_555 0.087 0.211 0.297 2.174 -2.676 -3.286 12 A_A17:U31_B A 17 ? B 31 ? 20 1 1 A G 19 1_555 B C 7 1_555 0.264 -0.117 0.339 -0.642 -20.954 2.388 13 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 -2.370 -1.749 -0.097 -7.306 -3.432 3.427 14 A_U20:U29_B A 20 ? B 29 ? 16 1 1 A C 21 1_555 B G 5 1_555 0.012 -0.040 -0.374 -4.528 -7.434 4.899 15 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 0.100 0.024 -0.539 -11.369 -9.828 -3.549 16 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.254 -0.151 -0.487 11.682 0.981 -6.617 17 A_C23:G26_B A 23 ? B 26 ? 19 1 1 C G 3 1_555 D C 23 1_555 -0.278 0.115 0.009 -0.855 -2.783 -3.672 18 C_G3:C46_D C 3 ? D 46 ? 19 1 1 C C 4 1_555 D G 22 1_555 0.115 0.249 -0.133 8.237 -1.142 -1.122 19 C_C4:G45_D C 4 ? D 45 ? 19 1 1 C G 5 1_555 D C 21 1_555 -0.292 -0.158 0.399 -4.739 -4.192 -2.985 20 C_G5:C44_D C 5 ? D 44 ? 19 1 1 C U 6 1_555 D U 20 1_555 -2.029 -1.389 -0.208 5.010 -8.175 -8.220 21 C_U6:U43_D C 6 ? D 43 ? ? ? 1 C C 7 1_555 D G 19 1_555 0.184 0.121 -0.418 1.928 -20.671 -8.925 22 C_C7:G42_D C 7 ? D 42 ? ? 1 1 C U 8 1_555 D A 17 1_555 -0.380 0.233 -0.291 3.260 -7.691 -5.865 23 C_U8:A40_D C 8 ? D 40 ? 20 1 1 C C 9 1_555 D G 16 1_555 0.070 -0.057 -0.457 3.802 -8.616 -6.605 24 C_C9:G39_D C 9 ? D 39 ? 19 1 1 C G 10 1_555 D C 15 1_555 -0.027 0.186 0.077 -2.957 -13.169 1.115 25 C_G10:C38_D C 10 ? D 38 ? 19 1 1 C 5BU 11 1_555 D A 14 1_555 -0.441 0.567 -0.615 7.872 -15.043 5.524 26 C_5BU11:A37_D C 11 ? D 37 ? ? ? 1 C C 12 1_555 D G 13 1_555 0.438 0.580 -0.282 5.770 -7.731 -7.337 27 C_C12:G36_D C 12 ? D 36 ? ? ? 1 C G 13 1_555 D C 12 1_555 -0.098 -0.024 -0.341 -6.112 -5.664 -0.923 28 C_G13:C35_D C 13 ? D 35 ? 19 1 1 C A 14 1_555 D 5BU 11 1_555 -0.260 0.338 -0.362 -3.952 -15.501 -17.490 29 C_A14:5BU34_D C 14 ? D 34 ? ? ? 1 C C 15 1_555 D G 10 1_555 0.084 -0.171 0.375 -8.918 -4.089 2.721 30 C_C15:G33_D C 15 ? D 33 ? 19 1 1 C G 16 1_555 D C 9 1_555 -0.208 0.248 0.470 -5.965 -2.265 3.068 31 C_G16:C32_D C 16 ? D 32 ? 19 1 1 C A 17 1_555 D U 8 1_555 0.211 -0.035 0.256 6.327 0.881 -4.608 32 C_A17:U31_D C 17 ? D 31 ? 20 1 1 C G 19 1_555 D C 7 1_555 -0.257 0.099 0.189 -4.176 -10.016 -4.100 33 C_G19:C30_D C 19 ? D 30 ? 19 1 1 C U 20 1_555 D U 6 1_555 1.916 -1.127 -0.625 4.385 -19.529 -5.869 34 C_U20:U29_D C 20 ? D 29 ? ? ? 1 C C 21 1_555 D G 5 1_555 -0.028 0.019 -0.377 3.926 -3.938 -3.934 35 C_C21:G28_D C 21 ? D 28 ? 19 1 1 C G 22 1_555 D C 4 1_555 -0.268 -0.059 -0.257 -2.606 -8.830 1.994 36 C_G22:C27_D C 22 ? D 27 ? 19 1 1 C C 23 1_555 D G 3 1_555 0.819 -0.174 0.087 4.312 0.441 -4.072 37 C_C23:G26_D C 23 ? D 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 5 1_555 B C 21 1_555 A C 7 1_555 B G 19 1_555 0.305 -3.895 6.200 -5.009 8.946 72.008 -3.826 -0.558 5.720 7.571 4.239 72.637 1 AA_G5C7:G42C44_BB A 5 ? B 44 ? A 7 ? B 42 ? 1 A C 7 1_555 B G 19 1_555 A U 8 1_555 B A 17 1_555 -0.013 -1.884 3.251 5.789 3.297 30.688 -4.080 1.074 2.985 6.139 -10.780 31.385 2 AA_C7U8:A40G42_BB A 7 ? B 42 ? A 8 ? B 40 ? 1 A U 8 1_555 B A 17 1_555 A C 9 1_555 B G 16 1_555 0.698 -0.930 3.289 -4.791 4.806 37.506 -2.019 -1.663 3.042 7.400 7.378 38.093 3 AA_U8C9:G39A40_BB A 8 ? B 40 ? A 9 ? B 39 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 0.188 -3.135 3.515 -0.977 21.458 37.765 -6.013 -0.335 1.584 30.343 1.382 43.252 4 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A 5BU 11 1_555 B A 14 1_555 -1.067 -1.923 3.177 1.999 -4.815 27.661 -2.815 2.667 3.372 -9.959 -4.134 28.139 5 AA_G105BU11:A37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A 5BU 11 1_555 B A 14 1_555 A C 12 1_555 B G 13 1_555 0.966 -1.384 3.074 0.233 5.134 36.297 -2.843 -1.507 2.864 8.190 -0.371 36.647 6 AA_5BU11C12:G36A37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.027 -2.317 3.319 0.457 9.592 25.781 -6.978 0.156 2.322 20.608 -0.982 27.483 7 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A A 14 1_555 B 5BU 11 1_555 -0.723 -1.850 3.192 -2.300 -1.947 27.450 -3.401 0.953 3.361 -4.087 4.829 27.612 8 AA_G13A14:5BU34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A A 14 1_555 B 5BU 11 1_555 A C 15 1_555 B G 10 1_555 1.816 -2.531 3.230 4.544 5.553 38.195 -4.460 -2.197 3.035 8.396 -6.870 38.839 9 AA_A14C15:G335BU34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 -1.035 -1.673 3.244 4.599 20.548 28.893 -5.183 2.240 1.571 35.799 -8.013 35.619 10 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A A 17 1_555 B U 8 1_555 -0.005 -1.089 3.060 -5.942 2.567 29.250 -2.596 -1.122 2.901 5.006 11.588 29.943 11 AA_G16A17:U31C32_BB A 16 ? B 32 ? A 17 ? B 31 ? 1 A A 17 1_555 B U 8 1_555 A G 19 1_555 B C 7 1_555 0.536 -1.649 3.276 1.778 5.061 38.819 -3.049 -0.593 3.066 7.571 -2.660 39.174 12 AA_A17G19:C30U31_BB A 17 ? B 31 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -0.304 -1.766 3.232 -4.305 8.349 24.173 -6.040 -0.405 2.508 19.041 9.817 25.909 13 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 -0.317 -1.466 3.209 2.045 9.307 39.174 -3.108 0.675 2.784 13.636 -2.996 40.272 14 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 -0.205 -1.757 3.571 1.661 11.245 28.712 -5.481 0.706 2.693 21.634 -3.196 30.836 15 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.656 -0.980 2.982 0.891 -3.787 37.319 -1.064 -0.911 3.077 -5.898 -1.388 37.514 16 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? 1 C G 3 1_555 D C 23 1_555 C C 4 1_555 D G 22 1_555 -0.648 -2.464 2.913 -2.732 0.243 39.465 -3.666 0.671 2.935 0.360 4.040 39.557 17 CC_G3C4:G45C46_DD C 3 ? D 46 ? C 4 ? D 45 ? 1 C C 4 1_555 D G 22 1_555 C G 5 1_555 D C 21 1_555 0.138 -2.835 3.238 -8.042 10.265 25.517 -7.658 -1.783 1.856 21.539 16.874 28.606 18 CC_C4G5:C44G45_DD C 4 ? D 45 ? C 5 ? D 44 ? 1 C G 5 1_555 D C 21 1_555 C U 6 1_555 D U 20 1_555 -0.582 -1.696 3.175 -3.908 -3.109 30.862 -2.554 0.335 3.372 -5.795 7.283 31.254 19 CC_G5U6:U43C44_DD C 5 ? D 44 ? C 6 ? D 43 ? 1 C U 6 1_555 D U 20 1_555 C C 7 1_555 D G 19 1_555 -0.288 -1.449 3.365 1.544 4.934 43.950 -2.386 0.527 3.181 6.565 -2.054 44.238 20 CC_U6C7:G42U43_DD C 6 ? D 43 ? C 7 ? D 42 ? 1 C C 7 1_555 D G 19 1_555 C U 8 1_555 D A 17 1_555 -0.264 -2.077 3.334 0.151 7.428 34.232 -4.520 0.460 2.834 12.439 -0.254 35.005 21 CC_C7U8:A40G42_DD C 7 ? D 42 ? C 8 ? D 40 ? 1 C U 8 1_555 D A 17 1_555 C C 9 1_555 D G 16 1_555 0.644 -1.237 3.470 5.182 8.198 33.428 -3.362 -0.261 3.150 13.893 -8.782 34.768 22 CC_U8C9:G39A40_DD C 8 ? D 40 ? C 9 ? D 39 ? 1 C C 9 1_555 D G 16 1_555 C G 10 1_555 D C 15 1_555 0.925 -1.524 3.354 -0.053 16.471 19.575 -7.501 -2.106 1.605 40.411 0.130 25.532 23 CC_C9G10:C38G39_DD C 9 ? D 39 ? C 10 ? D 38 ? 1 C G 10 1_555 D C 15 1_555 C 5BU 11 1_555 D A 14 1_555 -0.724 -2.691 3.108 -3.677 13.328 28.137 -6.972 0.795 1.761 25.553 7.049 31.289 24 CC_G105BU11:A37C38_DD C 10 ? D 38 ? C 11 ? D 37 ? 1 C 5BU 11 1_555 D A 14 1_555 C C 12 1_555 D G 13 1_555 -0.905 -1.357 3.725 -4.019 2.475 35.026 -2.652 0.813 3.702 4.090 6.640 35.332 25 CC_5BU11C12:G36A37_DD C 11 ? D 37 ? C 12 ? D 36 ? 1 C C 12 1_555 D G 13 1_555 C G 13 1_555 D C 12 1_555 -0.037 -2.306 3.756 2.690 13.520 25.523 -7.545 0.657 2.256 28.138 -5.598 28.953 26 CC_C12G13:C35G36_DD C 12 ? D 36 ? C 13 ? D 35 ? 1 C G 13 1_555 D C 12 1_555 C A 14 1_555 D 5BU 11 1_555 0.175 -1.795 3.296 -0.081 12.651 27.616 -5.708 -0.348 2.273 24.913 0.159 30.325 27 CC_G13A14:5BU34C35_DD C 13 ? D 35 ? C 14 ? D 34 ? 1 C A 14 1_555 D 5BU 11 1_555 C C 15 1_555 D G 10 1_555 2.348 -3.027 3.478 -2.858 1.746 34.484 -5.356 -4.388 3.127 2.936 4.808 34.641 28 CC_A14C15:G335BU34_DD C 14 ? D 34 ? C 15 ? D 33 ? 1 C C 15 1_555 D G 10 1_555 C G 16 1_555 D C 9 1_555 -0.904 -1.774 2.846 0.926 11.618 28.718 -5.042 1.832 1.967 22.298 -1.777 30.946 29 CC_C15G16:C32G33_DD C 15 ? D 33 ? C 16 ? D 32 ? 1 C G 16 1_555 D C 9 1_555 C A 17 1_555 D U 8 1_555 -0.704 -1.502 2.825 0.332 8.781 29.468 -4.211 1.381 2.285 16.798 -0.634 30.722 30 CC_G16A17:U31C32_DD C 16 ? D 32 ? C 17 ? D 31 ? 1 C A 17 1_555 D U 8 1_555 C G 19 1_555 D C 7 1_555 -0.717 -2.111 3.582 -3.849 5.070 36.727 -4.020 0.579 3.327 7.973 6.052 37.256 31 CC_A17G19:C30U31_DD C 17 ? D 31 ? C 19 ? D 30 ? 1 C G 19 1_555 D C 7 1_555 C U 20 1_555 D U 6 1_555 -0.318 -1.257 3.411 6.039 -3.034 39.147 -1.480 1.207 3.411 -4.488 -8.932 39.704 32 CC_G19U20:U29C30_DD C 19 ? D 30 ? C 20 ? D 29 ? 1 C U 20 1_555 D U 6 1_555 C C 21 1_555 D G 5 1_555 0.868 -2.417 3.528 3.158 4.219 28.825 -5.728 -1.006 3.224 8.387 -6.278 29.293 33 CC_U20C21:G28U29_DD C 20 ? D 29 ? C 21 ? D 28 ? 1 C C 21 1_555 D G 5 1_555 C G 22 1_555 D C 4 1_555 0.628 -1.415 3.412 3.894 8.032 24.476 -5.327 -0.335 2.874 18.190 -8.819 26.029 34 CC_C21G22:C27G28_DD C 21 ? D 28 ? C 22 ? D 27 ? 1 C G 22 1_555 D C 4 1_555 C C 23 1_555 D G 3 1_555 0.547 -2.089 3.444 4.775 2.588 41.566 -3.203 -0.245 3.354 3.628 -6.694 41.904 35 CC_G22C23:G26C27_DD C 22 ? D 27 ? C 23 ? D 26 ? # _pdbx_audit_support.funding_organization MEXT _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 23790054 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 4P3U _atom_sites.fract_transf_matrix[1][1] 0.006436 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003288 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030553 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013865 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_