data_4P43 # _entry.id 4P43 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P43 pdb_00004p43 10.2210/pdb4p43/pdb WWPDB D_1000200661 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-04 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' diffrn_source 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' pdbx_struct_oper_list 7 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 2 'Structure model' '_pdbx_struct_conn_angle.value' 26 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 27 2 'Structure model' '_struct_conn.pdbx_dist_value' 28 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 2 'Structure model' '_struct_conn.ptnr1_symmetry' 36 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P43 _pdbx_database_status.recvd_initial_deposition_date 2014-03-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4P20 PDB . unspecified 4P3S PDB . unspecified 4P3T PDB . unspecified 4P3U PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Koganei, M.' 2 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher . _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country ? _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full . _citation.journal_issue . _citation.journal_volume . _citation.language . _citation.page_first . _citation.page_last . _citation.title 'Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 2)' _citation.year . _citation.database_id_CSD . _citation.pdbx_database_id_DOI . _citation.pdbx_database_id_PubMed . _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Koganei, M.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*UP*GP*CP*GP*UP*CP*UP*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7332.368 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCUCGUCGACGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCUCGUCGACGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 U n 1 9 C n 1 10 G n 1 11 U n 1 12 C n 1 13 G n 1 14 A n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 24 U U B . n B 1 2 U 2 25 25 U U B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 U 8 31 31 U U B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 U 11 34 34 U U B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 A 14 37 37 A A B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 101 52 CA CA A . D 3 NA 1 102 61 NA NA A . E 2 CA 1 101 51 CA CA B . F 3 NA 1 102 62 NA NA B . G 4 HOH 1 201 165 HOH HOH A . G 4 HOH 2 202 121 HOH HOH A . G 4 HOH 3 203 119 HOH HOH A . G 4 HOH 4 204 102 HOH HOH A . G 4 HOH 5 205 128 HOH HOH A . G 4 HOH 6 206 211 HOH HOH A . G 4 HOH 7 207 155 HOH HOH A . G 4 HOH 8 208 116 HOH HOH A . G 4 HOH 9 209 109 HOH HOH A . G 4 HOH 10 210 149 HOH HOH A . G 4 HOH 11 211 133 HOH HOH A . G 4 HOH 12 212 117 HOH HOH A . G 4 HOH 13 213 111 HOH HOH A . G 4 HOH 14 214 118 HOH HOH A . G 4 HOH 15 215 176 HOH HOH A . G 4 HOH 16 216 134 HOH HOH A . G 4 HOH 17 217 223 HOH HOH A . G 4 HOH 18 218 153 HOH HOH A . G 4 HOH 19 219 142 HOH HOH A . G 4 HOH 20 220 180 HOH HOH A . G 4 HOH 21 221 169 HOH HOH A . G 4 HOH 22 222 157 HOH HOH A . G 4 HOH 23 223 135 HOH HOH A . G 4 HOH 24 224 146 HOH HOH A . G 4 HOH 25 225 125 HOH HOH A . G 4 HOH 26 226 101 HOH HOH A . G 4 HOH 27 227 218 HOH HOH A . G 4 HOH 28 228 154 HOH HOH A . G 4 HOH 29 229 152 HOH HOH A . G 4 HOH 30 230 206 HOH HOH A . G 4 HOH 31 231 205 HOH HOH A . G 4 HOH 32 232 202 HOH HOH A . G 4 HOH 33 233 103 HOH HOH A . G 4 HOH 34 234 106 HOH HOH A . G 4 HOH 35 235 110 HOH HOH A . G 4 HOH 36 236 123 HOH HOH A . G 4 HOH 37 237 126 HOH HOH A . G 4 HOH 38 238 129 HOH HOH A . G 4 HOH 39 239 130 HOH HOH A . G 4 HOH 40 240 131 HOH HOH A . G 4 HOH 41 241 132 HOH HOH A . G 4 HOH 42 242 145 HOH HOH A . G 4 HOH 43 243 147 HOH HOH A . G 4 HOH 44 244 150 HOH HOH A . G 4 HOH 45 245 159 HOH HOH A . G 4 HOH 46 246 161 HOH HOH A . G 4 HOH 47 247 164 HOH HOH A . G 4 HOH 48 248 167 HOH HOH A . G 4 HOH 49 249 168 HOH HOH A . G 4 HOH 50 250 183 HOH HOH A . G 4 HOH 51 251 189 HOH HOH A . G 4 HOH 52 252 193 HOH HOH A . G 4 HOH 53 253 194 HOH HOH A . G 4 HOH 54 254 196 HOH HOH A . G 4 HOH 55 255 197 HOH HOH A . G 4 HOH 56 256 204 HOH HOH A . G 4 HOH 57 257 209 HOH HOH A . G 4 HOH 58 258 210 HOH HOH A . G 4 HOH 59 259 212 HOH HOH A . G 4 HOH 60 260 214 HOH HOH A . G 4 HOH 61 261 217 HOH HOH A . H 4 HOH 1 201 156 HOH HOH B . H 4 HOH 2 202 175 HOH HOH B . H 4 HOH 3 203 115 HOH HOH B . H 4 HOH 4 204 108 HOH HOH B . H 4 HOH 5 205 104 HOH HOH B . H 4 HOH 6 206 220 HOH HOH B . H 4 HOH 7 207 141 HOH HOH B . H 4 HOH 8 208 201 HOH HOH B . H 4 HOH 9 209 122 HOH HOH B . H 4 HOH 10 210 124 HOH HOH B . H 4 HOH 11 211 222 HOH HOH B . H 4 HOH 12 212 190 HOH HOH B . H 4 HOH 13 213 144 HOH HOH B . H 4 HOH 14 214 199 HOH HOH B . H 4 HOH 15 215 163 HOH HOH B . H 4 HOH 16 216 192 HOH HOH B . H 4 HOH 17 217 219 HOH HOH B . H 4 HOH 18 218 198 HOH HOH B . H 4 HOH 19 219 148 HOH HOH B . H 4 HOH 20 220 224 HOH HOH B . H 4 HOH 21 221 216 HOH HOH B . H 4 HOH 22 222 162 HOH HOH B . H 4 HOH 23 223 207 HOH HOH B . H 4 HOH 24 224 225 HOH HOH B . H 4 HOH 25 225 160 HOH HOH B . H 4 HOH 26 226 151 HOH HOH B . H 4 HOH 27 227 213 HOH HOH B . H 4 HOH 28 228 105 HOH HOH B . H 4 HOH 29 229 107 HOH HOH B . H 4 HOH 30 230 112 HOH HOH B . H 4 HOH 31 231 113 HOH HOH B . H 4 HOH 32 232 114 HOH HOH B . H 4 HOH 33 233 120 HOH HOH B . H 4 HOH 34 234 127 HOH HOH B . H 4 HOH 35 235 136 HOH HOH B . H 4 HOH 36 236 137 HOH HOH B . H 4 HOH 37 237 138 HOH HOH B . H 4 HOH 38 238 139 HOH HOH B . H 4 HOH 39 239 140 HOH HOH B . H 4 HOH 40 240 143 HOH HOH B . H 4 HOH 41 241 158 HOH HOH B . H 4 HOH 42 242 166 HOH HOH B . H 4 HOH 43 243 170 HOH HOH B . H 4 HOH 44 244 171 HOH HOH B . H 4 HOH 45 245 172 HOH HOH B . H 4 HOH 46 246 173 HOH HOH B . H 4 HOH 47 247 174 HOH HOH B . H 4 HOH 48 248 177 HOH HOH B . H 4 HOH 49 249 178 HOH HOH B . H 4 HOH 50 250 179 HOH HOH B . H 4 HOH 51 251 181 HOH HOH B . H 4 HOH 52 252 182 HOH HOH B . H 4 HOH 53 253 184 HOH HOH B . H 4 HOH 54 254 185 HOH HOH B . H 4 HOH 55 255 186 HOH HOH B . H 4 HOH 56 256 187 HOH HOH B . H 4 HOH 57 257 188 HOH HOH B . H 4 HOH 58 258 191 HOH HOH B . H 4 HOH 59 259 195 HOH HOH B . H 4 HOH 60 260 200 HOH HOH B . H 4 HOH 61 261 203 HOH HOH B . H 4 HOH 62 262 208 HOH HOH B . H 4 HOH 63 263 215 HOH HOH B . H 4 HOH 64 264 221 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' . . . . . . . . . . . CrystalClear . . . . 1 ? phasing . . . . . . . . . . . PHENIX . . . . 2 ? refinement . . . . . . . . . . . CNS . . . . 3 ? 'data extraction' . . . . . . . . . . . PDB_EXTRACT . . . 3.14 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 5 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 6 # _cell.length_a 86.450 _cell.length_b 31.690 _cell.length_c 49.410 _cell.angle_alpha 90.000 _cell.angle_beta 116.340 _cell.angle_gamma 90.000 _cell.entry_id 4P43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P43 _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M . # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P43 _exptl.crystals_number 1 _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 40.52 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'Sodium Cacodylate, Spermine tetrahydrochloride, MPD, Calcium Chloride' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2014-02-16 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l . _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4P43 _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 44.280 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 8251 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 99.200 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 3.560 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 7.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared 1.000 _reflns.pdbx_scaling_rejects 223 _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all 29620 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.070 . 2.700 2788 . . 806 . 97.500 . . . . 0.371 . . . . . . . . 3.460 . 1.080 . . . . 3 1 1 2.070 2.150 . 3.200 2957 . . 812 . 100.000 . . . . 0.324 . . . . . . . . 3.630 . 1.110 . . . . 12 2 1 2.150 2.250 . 3.500 3023 . . 831 . 100.000 . . . . 0.292 . . . . . . . . 3.630 . 1.070 . . . . 8 3 1 2.250 2.370 . 3.700 2948 . . 809 . 99.900 . . . . 0.252 . . . . . . . . 3.640 . 1.010 . . . . 3 4 1 2.370 2.520 . 4.400 3011 . . 825 . 100.000 . . . . 0.205 . . . . . . . . 3.650 . 1.040 . . . . 1 5 1 2.520 2.710 . 5.300 3076 . . 843 . 100.000 . . . . 0.148 . . . . . . . . 3.640 . 0.920 . . . . 6 6 1 2.710 2.990 . 7.400 2947 . . 811 . 100.000 . . . . 0.098 . . . . . . . . 3.630 . 0.880 . . . . 6 7 1 2.990 3.420 . 12.100 3040 . . 838 . 99.800 . . . . 0.060 . . . . . . . . 3.580 . 0.900 . . . . 37 8 1 3.420 4.310 . 14.800 2986 . . 835 . 99.100 . . . . 0.054 . . . . . . . . 3.510 . 0.960 . . . . 52 9 1 4.310 44.280 . 19.800 2844 . . 841 . 96.000 . . . . 0.040 . . . . . . . . 3.270 . 1.050 . . . . 95 10 1 # _refine.aniso_B[1][1] 0.6470 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 7.1450 _refine.aniso_B[2][2] -1.2060 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.5590 _refine.B_iso_max 87.750 _refine.B_iso_mean 43.0773 _refine.B_iso_min 18.530 _refine.correlation_coeff_Fo_to_Fc . _refine.correlation_coeff_Fo_to_Fc_free . _refine.details . _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4P43 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 44.3000 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 8250 _refine.ls_number_reflns_R_free 878 _refine.ls_number_reflns_R_work 7372 _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 99.2000 _refine.ls_percent_reflns_R_free 10.6000 _refine.ls_R_factor_all . _refine.ls_R_factor_obs . _refine.ls_R_factor_R_free 0.2700 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.2457 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B . _refine.overall_SU_ML . _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set 0.7803 _refine.solvent_model_details . _refine.solvent_model_param_bsol 74.1715 _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct . _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values . _refine.pdbx_R_Free_selection_details . _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R . _refine.pdbx_overall_ESU_R_Free . _refine.pdbx_solvent_vdw_probe_radii . _refine.pdbx_solvent_ion_probe_radii . _refine.pdbx_solvent_shrinkage_radii . _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error . _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 44.3000 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1060 _refine_hist.pdbx_number_residues_total 44 _refine_hist.pdbx_B_iso_mean_ligand 38.34 _refine_hist.pdbx_B_iso_mean_solvent 47.78 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 931 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.004 . . . c_bond_d . . 'X-RAY DIFFRACTION' . 0.786 . . . c_angle_d . . 'X-RAY DIFFRACTION' . 0.000 1.500 . . c_mcbond_it . . 'X-RAY DIFFRACTION' . 1.553 2.000 . . c_scbond_it . . 'X-RAY DIFFRACTION' . 0.000 2.000 . . c_mcangle_it . . 'X-RAY DIFFRACTION' . 2.067 2.500 . . c_scangle_it . . # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 2.0000 2.0700 804 . 86 718 97.5000 . . . 0.3920 . 0.3517 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.0700 2.1500 811 . 81 730 100.0000 . . . 0.2915 . 0.3131 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.1500 2.2500 832 . 93 739 100.0000 . . . 0.3142 . 0.3025 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.2500 2.3700 810 . 97 713 99.9000 . . . 0.3060 . 0.2846 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.3700 2.5200 825 . 97 728 100.0000 . . . 0.2995 . 0.2807 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.5200 2.7100 843 . 93 750 100.0000 . . . 0.2697 . 0.2797 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.7100 2.9900 811 . 84 727 100.0000 . . . 0.3254 . 0.2909 . . . . . . 10 . 'X-RAY DIFFRACTION' 2.9900 3.4200 838 . 85 753 99.8000 . . . 0.3067 . 0.2146 . . . . . . 10 . 'X-RAY DIFFRACTION' 3.4200 4.3100 834 . 76 758 99.0000 . . . 0.1654 . 0.1803 . . . . . . 10 . 'X-RAY DIFFRACTION' 4.3100 44.3000 842 . 86 756 95.9000 . . . 0.2765 . 0.2462 . . . . . . 10 . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 dna-rna_free.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? # _struct.entry_id 4P43 _struct.title 'Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 2)' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P43 _struct_keywords.text 'ribosome, antibiotic-resistance, aminoglycoside, decoding, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4P43 _struct_ref.pdbx_db_accession 4P43 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4P43 A 1 ? 23 ? 4P43 1 ? 23 ? 1 23 2 1 4P43 B 1 ? 23 ? 4P43 24 ? 46 ? 24 46 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2340 ? 1 MORE -50 ? 1 'SSA (A^2)' 8150 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 9 "O2'" ? ? ? 1_555 D NA . NA ? ? A C 9 A NA 102 1_555 ? ? ? ? ? ? ? 2.768 ? ? metalc2 metalc ? ? A C 15 "O3'" ? ? ? 1_555 F NA . NA ? ? A C 15 B NA 102 4_545 ? ? ? ? ? ? ? 3.157 ? ? metalc3 metalc ? ? A C 15 "O2'" ? ? ? 1_555 F NA . NA ? ? A C 15 B NA 102 4_545 ? ? ? ? ? ? ? 2.982 ? ? metalc4 metalc ? ? A A 18 OP2 ? ? ? 1_555 C CA . CA ? ? A A 18 A CA 101 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc5 metalc ? ? A G 19 OP1 ? ? ? 1_555 C CA . CA ? ? A G 19 A CA 101 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 252 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 253 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc8 metalc ? ? D NA . NA ? ? ? 4_546 B C 15 "O2'" ? ? A NA 102 B C 38 1_555 ? ? ? ? ? ? ? 2.963 ? ? metalc9 metalc ? ? G HOH . O ? ? ? 1_555 F NA . NA ? ? A HOH 214 B NA 102 1_555 ? ? ? ? ? ? ? 3.012 ? ? metalc10 metalc ? ? B C 9 "O2'" ? ? ? 1_555 F NA . NA ? ? B C 32 B NA 102 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc11 metalc ? ? B A 18 OP2 ? ? ? 1_555 E CA . CA ? ? B A 41 B CA 101 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc12 metalc ? ? B G 19 OP1 ? ? ? 1_555 E CA . CA ? ? B G 42 B CA 101 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc13 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 101 B HOH 243 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc14 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 101 B HOH 244 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc15 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 101 B HOH 245 1_555 ? ? ? ? ? ? ? 2.376 ? ? hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 20 O4 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A U 6 O2 ? ? ? 1_555 B U 20 N3 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 17 N1 ? ? A U 8 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 17 N6 ? ? A U 8 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 17 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 17 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 17 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 17 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog45 hydrog ? ? A U 20 O2 ? ? ? 1_555 B U 6 N3 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog46 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A C 9 ? A C 9 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 "O2'" ? B C 15 ? B C 38 ? 1_555 114.6 ? 2 "O3'" ? A C 15 ? A C 15 ? 1_555 NA ? F NA . ? B NA 102 ? 4_545 "O2'" ? A C 15 ? A C 15 ? 1_555 54.8 ? 3 "O3'" ? A C 15 ? A C 15 ? 1_555 NA ? F NA . ? B NA 102 ? 4_545 O ? G HOH . ? A HOH 214 ? 1_555 66.3 ? 4 "O2'" ? A C 15 ? A C 15 ? 1_555 NA ? F NA . ? B NA 102 ? 4_545 O ? G HOH . ? A HOH 214 ? 1_555 32.5 ? 5 "O3'" ? A C 15 ? A C 15 ? 1_555 NA ? F NA . ? B NA 102 ? 4_545 "O2'" ? B C 9 ? B C 32 ? 1_555 57.9 ? 6 "O2'" ? A C 15 ? A C 15 ? 1_555 NA ? F NA . ? B NA 102 ? 4_545 "O2'" ? B C 9 ? B C 32 ? 1_555 22.3 ? 7 O ? G HOH . ? A HOH 214 ? 1_555 NA ? F NA . ? B NA 102 ? 4_545 "O2'" ? B C 9 ? B C 32 ? 1_555 11.3 ? 8 OP2 ? A A 18 ? A A 18 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 OP1 ? A G 19 ? A G 19 ? 1_555 88.4 ? 9 OP2 ? A A 18 ? A A 18 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 252 ? 1_555 110.0 ? 10 OP1 ? A G 19 ? A G 19 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 252 ? 1_555 83.3 ? 11 OP2 ? A A 18 ? A A 18 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 253 ? 1_555 75.7 ? 12 OP1 ? A G 19 ? A G 19 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 253 ? 1_555 120.7 ? 13 O ? G HOH . ? A HOH 252 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 253 ? 1_555 155.8 ? 14 OP2 ? B A 18 ? B A 41 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 OP1 ? B G 19 ? B G 42 ? 1_555 87.4 ? 15 OP2 ? B A 18 ? B A 41 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 243 ? 1_555 170.0 ? 16 OP1 ? B G 19 ? B G 42 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 243 ? 1_555 95.4 ? 17 OP2 ? B A 18 ? B A 41 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_555 99.7 ? 18 OP1 ? B G 19 ? B G 42 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_555 81.0 ? 19 O ? H HOH . ? B HOH 243 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 244 ? 1_555 90.2 ? 20 OP2 ? B A 18 ? B A 41 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 245 ? 1_555 89.9 ? 21 OP1 ? B G 19 ? B G 42 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 245 ? 1_555 157.4 ? 22 O ? H HOH . ? B HOH 243 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 245 ? 1_555 91.1 ? 23 O ? H HOH . ? B HOH 244 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 245 ? 1_555 77.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 4 'binding site for residue CA A 101' AC2 Software A NA 102 ? 3 'binding site for residue NA A 102' AC3 Software B CA 101 ? 5 'binding site for residue CA B 101' AC4 Software B NA 102 ? 4 'binding site for residue NA B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 A A 18 ? A A 18 . ? 1_555 ? 2 AC1 4 G A 19 ? G A 19 . ? 1_555 ? 3 AC1 4 HOH G . ? HOH A 252 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 253 . ? 1_555 ? 5 AC2 3 C A 9 ? C A 9 . ? 1_555 ? 6 AC2 3 G A 10 ? G A 10 . ? 1_555 ? 7 AC2 3 C B 15 ? C B 38 . ? 4_556 ? 8 AC3 5 A B 18 ? A B 41 . ? 1_555 ? 9 AC3 5 G B 19 ? G B 42 . ? 1_555 ? 10 AC3 5 HOH H . ? HOH B 243 . ? 1_555 ? 11 AC3 5 HOH H . ? HOH B 244 . ? 1_555 ? 12 AC3 5 HOH H . ? HOH B 245 . ? 1_555 ? 13 AC4 4 C A 15 ? C A 15 . ? 4_555 ? 14 AC4 4 HOH G . ? HOH A 214 . ? 1_555 ? 15 AC4 4 C B 9 ? C B 32 . ? 1_555 ? 16 AC4 4 G B 10 ? G B 33 . ? 1_555 ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 258 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.96 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 A U 2 ? A U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 NA NA NA N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P43 'double helix' 4P43 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.290 0.161 -0.095 -3.614 -2.363 7.797 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 -0.649 0.048 0.217 2.599 3.716 2.865 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 0.219 -0.285 0.133 2.537 -8.329 3.033 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 6 1_555 B U 20 1_555 2.100 -1.456 0.342 12.859 -10.167 7.012 4 A_U6:U43_B A 6 ? B 43 ? 16 1 1 A C 7 1_555 B G 19 1_555 0.241 -0.133 -0.285 17.934 -9.836 4.143 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A U 8 1_555 B A 17 1_555 -0.226 -0.122 -0.034 -3.351 -15.995 0.694 6 A_U8:A40_B A 8 ? B 40 ? 20 1 1 A C 9 1_555 B G 16 1_555 0.189 -0.245 0.147 9.405 -15.977 -0.807 7 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.246 -0.068 0.102 0.574 -13.737 1.365 8 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A U 11 1_555 B A 14 1_555 0.119 -0.060 0.245 -3.744 -15.082 6.665 9 A_U11:A37_B A 11 ? B 37 ? 20 1 1 A C 12 1_555 B G 13 1_555 0.070 -0.228 -0.170 7.580 -19.248 -0.903 10 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.104 -0.231 0.038 2.329 -10.971 -0.097 11 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A A 14 1_555 B U 11 1_555 -0.112 -0.068 0.301 8.262 -17.366 3.105 12 A_A14:U34_B A 14 ? B 34 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.288 -0.162 -0.032 5.279 -16.418 2.502 13 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 -0.083 -0.241 0.441 -2.588 -13.566 -1.370 14 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A A 17 1_555 B U 8 1_555 0.221 -0.158 0.048 3.203 -18.191 0.706 15 A_A17:U31_B A 17 ? B 31 ? 20 1 1 A G 19 1_555 B C 7 1_555 -0.148 -0.043 -0.338 -15.387 -11.393 4.901 16 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 2.627 -1.619 -0.184 -15.065 -11.452 5.367 17 A_U20:U29_B A 20 ? B 29 ? 16 1 1 A C 21 1_555 B G 5 1_555 0.775 -0.186 0.075 0.176 -6.267 7.157 18 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 -0.045 -0.344 0.093 0.534 -10.212 -0.781 19 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.072 -0.219 0.390 -6.429 -13.707 -0.162 20 A_C23:G26_B A 23 ? B 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.531 -2.244 3.277 -4.268 -3.295 24.538 -4.131 -0.114 3.582 -7.635 9.889 25.115 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 -0.231 -1.755 3.094 1.247 11.035 35.551 -4.027 0.506 2.450 17.553 -1.983 37.191 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 0.579 -0.908 3.011 -0.243 2.495 38.805 -1.641 -0.897 2.946 3.750 0.366 38.882 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 0.119 -1.499 3.230 7.753 4.426 27.197 -3.997 1.444 2.879 9.105 -15.951 28.599 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 7 1_555 B G 19 1_555 A U 8 1_555 B A 17 1_555 1.406 -1.435 3.562 3.467 9.411 43.832 -2.784 -1.508 3.298 12.413 -4.573 44.910 5 AA_C7U8:A40G42_BB A 7 ? B 42 ? A 8 ? B 40 ? 1 A U 8 1_555 B A 17 1_555 A C 9 1_555 B G 16 1_555 -0.162 -1.259 3.053 -3.288 2.489 33.292 -2.559 -0.217 2.956 4.323 5.712 33.539 6 AA_U8C9:G39A40_BB A 8 ? B 40 ? A 9 ? B 39 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 -0.144 -1.754 3.263 -2.032 15.263 29.628 -5.289 -0.046 2.134 27.622 3.677 33.311 7 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 0.263 -1.205 3.355 -1.543 9.365 33.987 -3.349 -0.657 2.917 15.646 2.579 35.249 8 AA_G10U11:A37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A U 11 1_555 B A 14 1_555 A C 12 1_555 B G 13 1_555 -0.344 -0.898 2.898 2.861 2.282 31.038 -2.044 1.111 2.784 4.246 -5.323 31.247 9 AA_U11C12:G36A37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.230 -1.424 3.302 -2.924 14.384 31.115 -4.495 -0.033 2.439 25.137 5.109 34.326 10 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A A 14 1_555 B U 11 1_555 0.104 -0.993 2.966 -0.970 4.376 32.740 -2.403 -0.329 2.810 7.718 1.710 33.037 11 AA_G13A14:U34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.184 -1.202 3.296 3.226 8.795 34.377 -3.204 0.153 2.915 14.549 -5.337 35.593 12 AA_A14C15:G33U34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 0.004 -1.885 3.199 -1.311 15.821 30.398 -5.315 -0.182 2.000 27.909 2.313 34.207 13 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A A 17 1_555 B U 8 1_555 0.062 -1.336 3.139 5.363 5.818 33.504 -3.102 0.672 2.850 9.921 -9.146 34.400 14 AA_G16A17:U31C32_BB A 16 ? B 32 ? A 17 ? B 31 ? 1 A A 17 1_555 B U 8 1_555 A G 19 1_555 B C 7 1_555 -1.361 -1.369 3.324 -4.104 13.034 44.067 -2.850 1.395 2.936 16.895 5.320 46.036 15 AA_A17G19:C30U31_BB A 17 ? B 31 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -0.128 -1.696 3.393 3.979 3.689 44.695 -2.553 0.531 3.228 4.829 -5.209 45.007 16 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.302 -1.783 2.681 4.935 4.575 21.221 -5.953 0.656 2.262 12.040 -12.985 22.251 17 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 -0.534 -1.972 3.030 0.085 7.992 24.405 -6.318 1.221 2.278 18.288 -0.194 25.662 18 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 -0.036 -1.623 3.433 -0.259 2.032 34.905 -3.018 0.019 3.336 3.384 0.432 34.964 19 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? # _pdbx_audit_support.funding_organization MEXT _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 23790054 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 4P43 _atom_sites.fract_transf_matrix[1][1] 0.011567 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005727 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031556 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022584 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O P # loop_