data_4P4P # _entry.id 4P4P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P4P pdb_00004p4p 10.2210/pdb4p4p/pdb WWPDB D_1000200693 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4P4P _pdbx_database_status.recvd_initial_deposition_date 2014-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mejia, E.' 1 'Burak, M.' 2 'Alonso, A.' 3 'Larraga, V.' 4 'Kunkel, T.' 5 'Bebenek, K.' 6 'Garcia-Diaz, M.' 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'DNA Repair (Amst.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1568-7856 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 1 _citation.page_last 9 _citation.title 'Structures of the Leishmania infantum polymerase beta.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.dnarep.2014.03.001 _citation.pdbx_database_id_PubMed 24666693 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mejia, E.' 1 ? primary 'Burak, M.' 2 ? primary 'Alonso, A.' 3 ? primary 'Larraga, V.' 4 ? primary 'Kunkel, T.A.' 5 ? primary 'Bebenek, K.' 6 ? primary 'Garcia-Diaz, M.' 7 ? # _cell.entry_id 4P4P _cell.length_a 106.497 _cell.length_b 106.497 _cell.length_c 159.609 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P4P _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase beta' 42962.488 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3') ; 2097.411 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*CP*CP*G)-3') ; 1191.818 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(P*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3') ; 3374.210 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 250 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GHMLRRKFLRRDHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKLLKKAEEIMA TGKLEELESKTKPKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQKADSIPSLTDQQRVGIKYFYDINEKIPMQES VLHENYLREKCMEVLGKDFSILICGSYRRRHPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQG PLKYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLLNEYGLFKLGT PEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPYAKPENRDP ; ;GHMLRRKFLRRDHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKLLKKAEEIMA TGKLEELESKTKPKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQKADSIPSLTDQQRVGIKYFYDINEKIPMQES VLHENYLREKCMEVLGKDFSILICGSYRRRHPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQG PLKYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLLNEYGLFKLGT PEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPYAKPENRDP ; A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DT)(DA)(DC)(DT)' CAGTACT C ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DG)' GCCG D ? 4 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DC)(DA)(DG)(DT)(DA)(DC)(DT)(DG)' CGGCAGTACTG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 LEU n 1 5 ARG n 1 6 ARG n 1 7 LYS n 1 8 PHE n 1 9 LEU n 1 10 ARG n 1 11 ARG n 1 12 ASP n 1 13 HIS n 1 14 ARG n 1 15 GLU n 1 16 ASN n 1 17 ILE n 1 18 ILE n 1 19 ARG n 1 20 ILE n 1 21 PHE n 1 22 GLN n 1 23 GLU n 1 24 MET n 1 25 ALA n 1 26 ASP n 1 27 LEU n 1 28 ASN n 1 29 ASN n 1 30 ALA n 1 31 LEU n 1 32 GLY n 1 33 GLU n 1 34 LYS n 1 35 TYR n 1 36 LYS n 1 37 VAL n 1 38 SER n 1 39 SER n 1 40 TYR n 1 41 HIS n 1 42 ARG n 1 43 SER n 1 44 ILE n 1 45 GLU n 1 46 SER n 1 47 LEU n 1 48 LYS n 1 49 THR n 1 50 ASN n 1 51 LEU n 1 52 ASP n 1 53 LYS n 1 54 PRO n 1 55 LEU n 1 56 ASN n 1 57 THR n 1 58 PRO n 1 59 GLN n 1 60 ASP n 1 61 LEU n 1 62 LYS n 1 63 ALA n 1 64 PHE n 1 65 SER n 1 66 GLY n 1 67 PHE n 1 68 GLY n 1 69 ALA n 1 70 LYS n 1 71 LEU n 1 72 LEU n 1 73 LYS n 1 74 LYS n 1 75 ALA n 1 76 GLU n 1 77 GLU n 1 78 ILE n 1 79 MET n 1 80 ALA n 1 81 THR n 1 82 GLY n 1 83 LYS n 1 84 LEU n 1 85 GLU n 1 86 GLU n 1 87 LEU n 1 88 GLU n 1 89 SER n 1 90 LYS n 1 91 THR n 1 92 LYS n 1 93 PRO n 1 94 LYS n 1 95 LEU n 1 96 LYS n 1 97 ALA n 1 98 ILE n 1 99 GLN n 1 100 GLU n 1 101 LEU n 1 102 THR n 1 103 GLN n 1 104 VAL n 1 105 HIS n 1 106 GLY n 1 107 PHE n 1 108 GLY n 1 109 PRO n 1 110 ARG n 1 111 ALA n 1 112 ALA n 1 113 ALA n 1 114 ALA n 1 115 LEU n 1 116 PHE n 1 117 ASP n 1 118 ARG n 1 119 GLU n 1 120 GLY n 1 121 ILE n 1 122 PHE n 1 123 THR n 1 124 VAL n 1 125 ASP n 1 126 GLU n 1 127 LEU n 1 128 LEU n 1 129 GLN n 1 130 LYS n 1 131 ALA n 1 132 ASP n 1 133 SER n 1 134 ILE n 1 135 PRO n 1 136 SER n 1 137 LEU n 1 138 THR n 1 139 ASP n 1 140 GLN n 1 141 GLN n 1 142 ARG n 1 143 VAL n 1 144 GLY n 1 145 ILE n 1 146 LYS n 1 147 TYR n 1 148 PHE n 1 149 TYR n 1 150 ASP n 1 151 ILE n 1 152 ASN n 1 153 GLU n 1 154 LYS n 1 155 ILE n 1 156 PRO n 1 157 MET n 1 158 GLN n 1 159 GLU n 1 160 SER n 1 161 VAL n 1 162 LEU n 1 163 HIS n 1 164 GLU n 1 165 ASN n 1 166 TYR n 1 167 LEU n 1 168 ARG n 1 169 GLU n 1 170 LYS n 1 171 CYS n 1 172 MET n 1 173 GLU n 1 174 VAL n 1 175 LEU n 1 176 GLY n 1 177 LYS n 1 178 ASP n 1 179 PHE n 1 180 SER n 1 181 ILE n 1 182 LEU n 1 183 ILE n 1 184 CYS n 1 185 GLY n 1 186 SER n 1 187 TYR n 1 188 ARG n 1 189 ARG n 1 190 ARG n 1 191 HIS n 1 192 PRO n 1 193 PHE n 1 194 SER n 1 195 GLY n 1 196 ASP n 1 197 VAL n 1 198 ASP n 1 199 ALA n 1 200 ILE n 1 201 LEU n 1 202 SER n 1 203 ARG n 1 204 THR n 1 205 LEU n 1 206 ASP n 1 207 ALA n 1 208 PRO n 1 209 PRO n 1 210 LEU n 1 211 SER n 1 212 GLU n 1 213 PRO n 1 214 VAL n 1 215 ALA n 1 216 ALA n 1 217 THR n 1 218 GLY n 1 219 VAL n 1 220 LEU n 1 221 GLY n 1 222 HIS n 1 223 PHE n 1 224 VAL n 1 225 GLU n 1 226 PHE n 1 227 LEU n 1 228 GLU n 1 229 SER n 1 230 LEU n 1 231 LYS n 1 232 TYR n 1 233 LEU n 1 234 GLU n 1 235 ALA n 1 236 THR n 1 237 MET n 1 238 ALA n 1 239 GLN n 1 240 GLY n 1 241 PRO n 1 242 LEU n 1 243 LYS n 1 244 TYR n 1 245 MET n 1 246 GLY n 1 247 MET n 1 248 GLY n 1 249 ARG n 1 250 LEU n 1 251 PRO n 1 252 PRO n 1 253 ARG n 1 254 ILE n 1 255 VAL n 1 256 ARG n 1 257 ASP n 1 258 LYS n 1 259 ALA n 1 260 GLY n 1 261 ARG n 1 262 GLU n 1 263 ASN n 1 264 THR n 1 265 LYS n 1 266 VAL n 1 267 TYR n 1 268 LYS n 1 269 ALA n 1 270 ARG n 1 271 ARG n 1 272 VAL n 1 273 ASP n 1 274 ILE n 1 275 ARG n 1 276 LEU n 1 277 ILE n 1 278 GLU n 1 279 THR n 1 280 LYS n 1 281 SER n 1 282 VAL n 1 283 PRO n 1 284 THR n 1 285 ALA n 1 286 MET n 1 287 LEU n 1 288 THR n 1 289 PHE n 1 290 THR n 1 291 GLY n 1 292 SER n 1 293 LYS n 1 294 ASN n 1 295 PHE n 1 296 ASN n 1 297 VAL n 1 298 ILE n 1 299 MET n 1 300 ARG n 1 301 GLN n 1 302 ALA n 1 303 ALA n 1 304 ILE n 1 305 SER n 1 306 LYS n 1 307 GLY n 1 308 TYR n 1 309 LEU n 1 310 LEU n 1 311 ASN n 1 312 GLU n 1 313 TYR n 1 314 GLY n 1 315 LEU n 1 316 PHE n 1 317 LYS n 1 318 LEU n 1 319 GLY n 1 320 THR n 1 321 PRO n 1 322 GLU n 1 323 GLU n 1 324 ALA n 1 325 ARG n 1 326 ALA n 1 327 LEU n 1 328 TYR n 1 329 GLU n 1 330 ARG n 1 331 ILE n 1 332 GLY n 1 333 ILE n 1 334 ARG n 1 335 GLY n 1 336 LYS n 1 337 ASN n 1 338 ALA n 1 339 GLY n 1 340 GLU n 1 341 GLU n 1 342 LEU n 1 343 GLY n 1 344 VAL n 1 345 PRO n 1 346 LYS n 1 347 ASP n 1 348 GLU n 1 349 LEU n 1 350 GLU n 1 351 ASP n 1 352 LYS n 1 353 ARG n 1 354 VAL n 1 355 GLU n 1 356 VAL n 1 357 ARG n 1 358 SER n 1 359 GLU n 1 360 GLN n 1 361 ASP n 1 362 VAL n 1 363 PHE n 1 364 ASP n 1 365 VAL n 1 366 LEU n 1 367 GLY n 1 368 MET n 1 369 PRO n 1 370 TYR n 1 371 ALA n 1 372 LYS n 1 373 PRO n 1 374 GLU n 1 375 ASN n 1 376 ARG n 1 377 ASP n 1 378 PRO n 2 1 DC n 2 2 DA n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DC n 2 7 DT n 3 1 DG n 3 2 DC n 3 3 DC n 3 4 DG n 4 1 DC n 4 2 DG n 4 3 DG n 4 4 DC n 4 5 DA n 4 6 DG n 4 7 DT n 4 8 DA n 4 9 DC n 4 10 DT n 4 11 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 378 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Leishmania infantum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5671 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 6 'synthetic construct' ? 32630 ? 3 1 sample 1 3 'synthetic construct' ? 32630 ? 4 1 sample 1 11 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9U6N3_LEIIN Q9U6N3 1 ;MLRRKFLRRDHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKLLKKAEEIMATG KLEELESKTKPKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQKADSIPSLTDQQRVGIKYFYDINEKIPMQESVL HENYLREKCMEVLGKDFSILICGSYRRRHPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQGPL KYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLLNEYGLFKLGTPE EARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPYAKPENRDP ; 1 ? 2 PDB 4P4P 4P4P 2 ? 1 ? 3 PDB 4P4P 4P4P 3 ? 1 ? 4 PDB 4P4P 4P4P 4 ? 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4P4P A 3 ? 378 ? Q9U6N3 1 ? 376 ? 1 376 2 2 4P4P C 1 ? 6 ? 4P4P 1 ? 6 ? 1 6 3 3 4P4P D 1 ? 3 ? 4P4P 1 ? 3 ? 1 3 4 4 4P4P B 1 ? 11 ? 4P4P 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4P4P GLY A 1 ? UNP Q9U6N3 ? ? 'expression tag' -1 1 1 4P4P HIS A 2 ? UNP Q9U6N3 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4P4P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M ammonium sulfate, 0.1 M sodium acetate, pH 4.6 and 12.5% PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-04-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4P4P _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.297 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24544 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4P4P _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24483 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.303 _refine.ls_d_res_high 2.2973 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.1948 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1912 _refine.ls_R_factor_R_free 0.2338 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.16 _refine.ls_number_reflns_R_free 1997 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 1BPY _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.22 _refine.pdbx_overall_phase_error 22.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2219 _refine_hist.pdbx_number_atoms_nucleic_acid 386 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 250 _refine_hist.number_atoms_total 2856 _refine_hist.d_res_high 2.2973 _refine_hist.d_res_low 44.303 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2705 'X-RAY DIFFRACTION' ? f_angle_d 1.045 ? ? 3730 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.591 ? ? 1058 'X-RAY DIFFRACTION' ? f_chiral_restr 0.064 ? ? 412 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 420 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2973 2.3548 1536 0.2131 98.00 0.2732 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.3548 2.4184 1591 0.2122 100.00 0.2372 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.4184 2.4896 1567 0.1860 100.00 0.2696 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.4896 2.5699 1574 0.1773 100.00 0.2097 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.5699 2.6618 1583 0.1833 100.00 0.2085 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.6618 2.7683 1561 0.1896 100.00 0.2178 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.7683 2.8943 1586 0.1915 100.00 0.2590 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.8943 3.0469 1605 0.2017 100.00 0.2690 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.0469 3.2377 1593 0.2152 100.00 0.2475 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.2377 3.4876 1607 0.1822 100.00 0.2331 . . 143 . . . . 'X-RAY DIFFRACTION' . 3.4876 3.8384 1612 0.1817 100.00 0.2344 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.8384 4.3934 1626 0.1656 100.00 0.1981 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.3934 5.5335 1661 0.1766 100.00 0.2036 . . 148 . . . . 'X-RAY DIFFRACTION' . 5.5335 44.3107 1784 0.2233 100.00 0.2647 . . 156 . . . . # _struct.entry_id 4P4P _struct.title 'Crystal structure of Leishmania infantum polymerase beta: Nick complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4P4P _struct_keywords.text 'DNA polymerase, TRANSFERASE-DNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 94 ? THR A 102 ? LYS A 92 THR A 100 1 ? 9 HELX_P HELX_P2 AA2 GLY A 108 ? GLY A 120 ? GLY A 106 GLY A 118 1 ? 13 HELX_P HELX_P3 AA3 THR A 123 ? ALA A 131 ? THR A 121 ALA A 129 1 ? 9 HELX_P HELX_P4 AA4 ASP A 132 ? ILE A 134 ? ASP A 130 ILE A 132 5 ? 3 HELX_P HELX_P5 AA5 THR A 138 ? TYR A 147 ? THR A 136 TYR A 145 1 ? 10 HELX_P HELX_P6 AA6 TYR A 147 ? ASN A 152 ? TYR A 145 ASN A 150 1 ? 6 HELX_P HELX_P7 AA7 MET A 157 ? LEU A 175 ? MET A 155 LEU A 173 1 ? 19 HELX_P HELX_P8 AA8 CYS A 184 ? ARG A 189 ? CYS A 182 ARG A 187 1 ? 6 HELX_P HELX_P9 AA9 PRO A 213 ? THR A 217 ? PRO A 211 THR A 215 5 ? 5 HELX_P HELX_P10 AB1 GLY A 218 ? LEU A 230 ? GLY A 216 LEU A 228 1 ? 13 HELX_P HELX_P11 AB2 GLU A 278 ? LYS A 280 ? GLU A 276 LYS A 278 5 ? 3 HELX_P HELX_P12 AB3 SER A 281 ? GLY A 291 ? SER A 279 GLY A 289 1 ? 11 HELX_P HELX_P13 AB4 SER A 292 ? LYS A 306 ? SER A 290 LYS A 304 1 ? 15 HELX_P HELX_P14 AB5 THR A 320 ? GLY A 332 ? THR A 318 GLY A 330 1 ? 13 HELX_P HELX_P15 AB6 LYS A 346 ? ASP A 351 ? LYS A 344 ASP A 349 1 ? 6 HELX_P HELX_P16 AB7 SER A 358 ? LEU A 366 ? SER A 356 LEU A 364 1 ? 9 HELX_P HELX_P17 AB8 LYS A 372 ? ARG A 376 ? LYS A 370 ARG A 374 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A THR 102 O ? ? ? 1_555 E NA . NA ? ? A THR 100 A NA 401 1_555 ? ? ? ? ? ? ? 2.472 ? ? metalc2 metalc ? ? A VAL 104 O ? ? ? 1_555 E NA . NA ? ? A VAL 102 A NA 401 1_555 ? ? ? ? ? ? ? 2.923 ? ? metalc3 metalc ? ? A PHE 107 O ? ? ? 1_555 E NA . NA ? ? A PHE 105 A NA 401 1_555 ? ? ? ? ? ? ? 2.935 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 401 A HOH 646 1_555 ? ? ? ? ? ? ? 2.849 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 B DA 5 OP1 ? ? A NA 401 C DA 5 1_555 ? ? ? ? ? ? ? 2.534 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 401 C HOH 117 1_555 ? ? ? ? ? ? ? 2.160 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 2 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 2 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 3 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 3 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 3 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 4 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 4 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 5 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 5 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 5 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 6 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 6 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 6 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 6 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 7 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 7 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 7 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 7 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 4 N3 ? ? D DG 1 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 4 O2 ? ? D DG 1 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 4 N4 ? ? D DG 1 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 3 N1 ? ? D DC 2 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 3 O6 ? ? D DC 2 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 3 N2 ? ? D DC 2 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 291 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 289 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 292 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 290 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.76 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 155 ? PRO A 156 ? ILE A 153 PRO A 154 AA1 2 PHE A 193 ? SER A 194 ? PHE A 191 SER A 192 AA2 1 PHE A 179 ? ILE A 183 ? PHE A 177 ILE A 181 AA2 2 VAL A 197 ? ARG A 203 ? VAL A 195 ARG A 201 AA2 3 ARG A 270 ? ILE A 277 ? ARG A 268 ILE A 275 AA2 4 LYS A 243 ? GLY A 248 ? LYS A 241 GLY A 246 AA2 5 LEU A 233 ? GLN A 239 ? LEU A 231 GLN A 237 AA3 1 TYR A 308 ? ASN A 311 ? TYR A 306 ASN A 309 AA3 2 GLY A 314 ? LYS A 317 ? GLY A 312 LYS A 315 AA4 1 GLU A 340 ? GLU A 341 ? GLU A 338 GLU A 339 AA4 2 VAL A 344 ? PRO A 345 ? VAL A 342 PRO A 343 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 155 ? N ILE A 153 O SER A 194 ? O SER A 192 AA2 1 2 N LEU A 182 ? N LEU A 180 O ILE A 200 ? O ILE A 198 AA2 2 3 N LEU A 201 ? N LEU A 199 O ARG A 275 ? O ARG A 273 AA2 3 4 O ARG A 270 ? O ARG A 268 N GLY A 248 ? N GLY A 246 AA2 4 5 O MET A 245 ? O MET A 243 N ALA A 238 ? N ALA A 236 AA3 1 2 N LEU A 309 ? N LEU A 307 O PHE A 316 ? O PHE A 314 AA4 1 2 N GLU A 341 ? N GLU A 339 O VAL A 344 ? O VAL A 342 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'binding site for residue NA A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 THR A 102 ? THR A 100 . ? 1_555 ? 2 AC1 6 VAL A 104 ? VAL A 102 . ? 1_555 ? 3 AC1 6 PHE A 107 ? PHE A 105 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 646 . ? 1_555 ? 5 AC1 6 DA B 5 ? DA C 5 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH C 117 . ? 1_555 ? # _atom_sites.entry_id 4P4P _atom_sites.fract_transf_matrix[1][1] 0.009390 _atom_sites.fract_transf_matrix[1][2] 0.005421 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010843 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006265 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 HIS 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 LEU 4 2 ? ? ? A . n A 1 5 ARG 5 3 ? ? ? A . n A 1 6 ARG 6 4 ? ? ? A . n A 1 7 LYS 7 5 ? ? ? A . n A 1 8 PHE 8 6 ? ? ? A . n A 1 9 LEU 9 7 ? ? ? A . n A 1 10 ARG 10 8 ? ? ? A . n A 1 11 ARG 11 9 ? ? ? A . n A 1 12 ASP 12 10 ? ? ? A . n A 1 13 HIS 13 11 ? ? ? A . n A 1 14 ARG 14 12 ? ? ? A . n A 1 15 GLU 15 13 ? ? ? A . n A 1 16 ASN 16 14 ? ? ? A . n A 1 17 ILE 17 15 ? ? ? A . n A 1 18 ILE 18 16 ? ? ? A . n A 1 19 ARG 19 17 ? ? ? A . n A 1 20 ILE 20 18 ? ? ? A . n A 1 21 PHE 21 19 ? ? ? A . n A 1 22 GLN 22 20 ? ? ? A . n A 1 23 GLU 23 21 ? ? ? A . n A 1 24 MET 24 22 ? ? ? A . n A 1 25 ALA 25 23 ? ? ? A . n A 1 26 ASP 26 24 ? ? ? A . n A 1 27 LEU 27 25 ? ? ? A . n A 1 28 ASN 28 26 ? ? ? A . n A 1 29 ASN 29 27 ? ? ? A . n A 1 30 ALA 30 28 ? ? ? A . n A 1 31 LEU 31 29 ? ? ? A . n A 1 32 GLY 32 30 ? ? ? A . n A 1 33 GLU 33 31 ? ? ? A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 TYR 35 33 33 TYR TYR A . n A 1 36 LYS 36 34 34 LYS LYS A . n A 1 37 VAL 37 35 35 VAL VAL A . n A 1 38 SER 38 36 ? ? ? A . n A 1 39 SER 39 37 ? ? ? A . n A 1 40 TYR 40 38 ? ? ? A . n A 1 41 HIS 41 39 ? ? ? A . n A 1 42 ARG 42 40 ? ? ? A . n A 1 43 SER 43 41 ? ? ? A . n A 1 44 ILE 44 42 ? ? ? A . n A 1 45 GLU 45 43 ? ? ? A . n A 1 46 SER 46 44 ? ? ? A . n A 1 47 LEU 47 45 ? ? ? A . n A 1 48 LYS 48 46 ? ? ? A . n A 1 49 THR 49 47 ? ? ? A . n A 1 50 ASN 50 48 ? ? ? A . n A 1 51 LEU 51 49 ? ? ? A . n A 1 52 ASP 52 50 ? ? ? A . n A 1 53 LYS 53 51 ? ? ? A . n A 1 54 PRO 54 52 ? ? ? A . n A 1 55 LEU 55 53 ? ? ? A . n A 1 56 ASN 56 54 ? ? ? A . n A 1 57 THR 57 55 ? ? ? A . n A 1 58 PRO 58 56 ? ? ? A . n A 1 59 GLN 59 57 ? ? ? A . n A 1 60 ASP 60 58 ? ? ? A . n A 1 61 LEU 61 59 ? ? ? A . n A 1 62 LYS 62 60 ? ? ? A . n A 1 63 ALA 63 61 ? ? ? A . n A 1 64 PHE 64 62 ? ? ? A . n A 1 65 SER 65 63 ? ? ? A . n A 1 66 GLY 66 64 ? ? ? A . n A 1 67 PHE 67 65 ? ? ? A . n A 1 68 GLY 68 66 ? ? ? A . n A 1 69 ALA 69 67 ? ? ? A . n A 1 70 LYS 70 68 ? ? ? A . n A 1 71 LEU 71 69 ? ? ? A . n A 1 72 LEU 72 70 ? ? ? A . n A 1 73 LYS 73 71 ? ? ? A . n A 1 74 LYS 74 72 ? ? ? A . n A 1 75 ALA 75 73 ? ? ? A . n A 1 76 GLU 76 74 ? ? ? A . n A 1 77 GLU 77 75 ? ? ? A . n A 1 78 ILE 78 76 ? ? ? A . n A 1 79 MET 79 77 ? ? ? A . n A 1 80 ALA 80 78 ? ? ? A . n A 1 81 THR 81 79 ? ? ? A . n A 1 82 GLY 82 80 ? ? ? A . n A 1 83 LYS 83 81 ? ? ? A . n A 1 84 LEU 84 82 ? ? ? A . n A 1 85 GLU 85 83 ? ? ? A . n A 1 86 GLU 86 84 ? ? ? A . n A 1 87 LEU 87 85 ? ? ? A . n A 1 88 GLU 88 86 ? ? ? A . n A 1 89 SER 89 87 ? ? ? A . n A 1 90 LYS 90 88 ? ? ? A . n A 1 91 THR 91 89 ? ? ? A . n A 1 92 LYS 92 90 ? ? ? A . n A 1 93 PRO 93 91 91 PRO PRO A . n A 1 94 LYS 94 92 92 LYS LYS A . n A 1 95 LEU 95 93 93 LEU LEU A . n A 1 96 LYS 96 94 94 LYS LYS A . n A 1 97 ALA 97 95 95 ALA ALA A . n A 1 98 ILE 98 96 96 ILE ILE A . n A 1 99 GLN 99 97 97 GLN GLN A . n A 1 100 GLU 100 98 98 GLU GLU A . n A 1 101 LEU 101 99 99 LEU LEU A . n A 1 102 THR 102 100 100 THR THR A . n A 1 103 GLN 103 101 101 GLN GLN A . n A 1 104 VAL 104 102 102 VAL VAL A . n A 1 105 HIS 105 103 103 HIS HIS A . n A 1 106 GLY 106 104 104 GLY GLY A . n A 1 107 PHE 107 105 105 PHE PHE A . n A 1 108 GLY 108 106 106 GLY GLY A . n A 1 109 PRO 109 107 107 PRO PRO A . n A 1 110 ARG 110 108 108 ARG ARG A . n A 1 111 ALA 111 109 109 ALA ALA A . n A 1 112 ALA 112 110 110 ALA ALA A . n A 1 113 ALA 113 111 111 ALA ALA A . n A 1 114 ALA 114 112 112 ALA ALA A . n A 1 115 LEU 115 113 113 LEU LEU A . n A 1 116 PHE 116 114 114 PHE PHE A . n A 1 117 ASP 117 115 115 ASP ASP A . n A 1 118 ARG 118 116 116 ARG ARG A . n A 1 119 GLU 119 117 117 GLU GLU A . n A 1 120 GLY 120 118 118 GLY GLY A . n A 1 121 ILE 121 119 119 ILE ILE A . n A 1 122 PHE 122 120 120 PHE PHE A . n A 1 123 THR 123 121 121 THR THR A . n A 1 124 VAL 124 122 122 VAL VAL A . n A 1 125 ASP 125 123 123 ASP ASP A . n A 1 126 GLU 126 124 124 GLU GLU A . n A 1 127 LEU 127 125 125 LEU LEU A . n A 1 128 LEU 128 126 126 LEU LEU A . n A 1 129 GLN 129 127 127 GLN GLN A . n A 1 130 LYS 130 128 128 LYS LYS A . n A 1 131 ALA 131 129 129 ALA ALA A . n A 1 132 ASP 132 130 130 ASP ASP A . n A 1 133 SER 133 131 131 SER SER A . n A 1 134 ILE 134 132 132 ILE ILE A . n A 1 135 PRO 135 133 133 PRO PRO A . n A 1 136 SER 136 134 134 SER SER A . n A 1 137 LEU 137 135 135 LEU LEU A . n A 1 138 THR 138 136 136 THR THR A . n A 1 139 ASP 139 137 137 ASP ASP A . n A 1 140 GLN 140 138 138 GLN GLN A . n A 1 141 GLN 141 139 139 GLN GLN A . n A 1 142 ARG 142 140 140 ARG ARG A . n A 1 143 VAL 143 141 141 VAL VAL A . n A 1 144 GLY 144 142 142 GLY GLY A . n A 1 145 ILE 145 143 143 ILE ILE A . n A 1 146 LYS 146 144 144 LYS LYS A . n A 1 147 TYR 147 145 145 TYR TYR A . n A 1 148 PHE 148 146 146 PHE PHE A . n A 1 149 TYR 149 147 147 TYR TYR A . n A 1 150 ASP 150 148 148 ASP ASP A . n A 1 151 ILE 151 149 149 ILE ILE A . n A 1 152 ASN 152 150 150 ASN ASN A . n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 LYS 154 152 152 LYS LYS A . n A 1 155 ILE 155 153 153 ILE ILE A . n A 1 156 PRO 156 154 154 PRO PRO A . n A 1 157 MET 157 155 155 MET MET A . n A 1 158 GLN 158 156 156 GLN GLN A . n A 1 159 GLU 159 157 157 GLU GLU A . n A 1 160 SER 160 158 158 SER SER A . n A 1 161 VAL 161 159 159 VAL VAL A . n A 1 162 LEU 162 160 160 LEU LEU A . n A 1 163 HIS 163 161 161 HIS HIS A . n A 1 164 GLU 164 162 162 GLU GLU A . n A 1 165 ASN 165 163 163 ASN ASN A . n A 1 166 TYR 166 164 164 TYR TYR A . n A 1 167 LEU 167 165 165 LEU LEU A . n A 1 168 ARG 168 166 166 ARG ARG A . n A 1 169 GLU 169 167 167 GLU GLU A . n A 1 170 LYS 170 168 168 LYS LYS A . n A 1 171 CYS 171 169 169 CYS CYS A . n A 1 172 MET 172 170 170 MET MET A . n A 1 173 GLU 173 171 171 GLU GLU A . n A 1 174 VAL 174 172 172 VAL VAL A . n A 1 175 LEU 175 173 173 LEU LEU A . n A 1 176 GLY 176 174 174 GLY GLY A . n A 1 177 LYS 177 175 175 LYS LYS A . n A 1 178 ASP 178 176 176 ASP ASP A . n A 1 179 PHE 179 177 177 PHE PHE A . n A 1 180 SER 180 178 178 SER SER A . n A 1 181 ILE 181 179 179 ILE ILE A . n A 1 182 LEU 182 180 180 LEU LEU A . n A 1 183 ILE 183 181 181 ILE ILE A . n A 1 184 CYS 184 182 182 CYS CYS A . n A 1 185 GLY 185 183 183 GLY GLY A . n A 1 186 SER 186 184 184 SER SER A . n A 1 187 TYR 187 185 185 TYR TYR A . n A 1 188 ARG 188 186 186 ARG ARG A . n A 1 189 ARG 189 187 187 ARG ARG A . n A 1 190 ARG 190 188 188 ARG ARG A . n A 1 191 HIS 191 189 189 HIS HIS A . n A 1 192 PRO 192 190 190 PRO PRO A . n A 1 193 PHE 193 191 191 PHE PHE A . n A 1 194 SER 194 192 192 SER SER A . n A 1 195 GLY 195 193 193 GLY GLY A . n A 1 196 ASP 196 194 194 ASP ASP A . n A 1 197 VAL 197 195 195 VAL VAL A . n A 1 198 ASP 198 196 196 ASP ASP A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 ILE 200 198 198 ILE ILE A . n A 1 201 LEU 201 199 199 LEU LEU A . n A 1 202 SER 202 200 200 SER SER A . n A 1 203 ARG 203 201 201 ARG ARG A . n A 1 204 THR 204 202 202 THR THR A . n A 1 205 LEU 205 203 203 LEU LEU A . n A 1 206 ASP 206 204 204 ASP ASP A . n A 1 207 ALA 207 205 205 ALA ALA A . n A 1 208 PRO 208 206 206 PRO PRO A . n A 1 209 PRO 209 207 207 PRO PRO A . n A 1 210 LEU 210 208 208 LEU LEU A . n A 1 211 SER 211 209 209 SER SER A . n A 1 212 GLU 212 210 210 GLU GLU A . n A 1 213 PRO 213 211 211 PRO PRO A . n A 1 214 VAL 214 212 212 VAL VAL A . n A 1 215 ALA 215 213 213 ALA ALA A . n A 1 216 ALA 216 214 214 ALA ALA A . n A 1 217 THR 217 215 215 THR THR A . n A 1 218 GLY 218 216 216 GLY GLY A . n A 1 219 VAL 219 217 217 VAL VAL A . n A 1 220 LEU 220 218 218 LEU LEU A . n A 1 221 GLY 221 219 219 GLY GLY A . n A 1 222 HIS 222 220 220 HIS HIS A . n A 1 223 PHE 223 221 221 PHE PHE A . n A 1 224 VAL 224 222 222 VAL VAL A . n A 1 225 GLU 225 223 223 GLU GLU A . n A 1 226 PHE 226 224 224 PHE PHE A . n A 1 227 LEU 227 225 225 LEU LEU A . n A 1 228 GLU 228 226 226 GLU GLU A . n A 1 229 SER 229 227 227 SER SER A . n A 1 230 LEU 230 228 228 LEU LEU A . n A 1 231 LYS 231 229 229 LYS LYS A . n A 1 232 TYR 232 230 230 TYR TYR A . n A 1 233 LEU 233 231 231 LEU LEU A . n A 1 234 GLU 234 232 232 GLU GLU A . n A 1 235 ALA 235 233 233 ALA ALA A . n A 1 236 THR 236 234 234 THR THR A . n A 1 237 MET 237 235 235 MET MET A . n A 1 238 ALA 238 236 236 ALA ALA A . n A 1 239 GLN 239 237 237 GLN GLN A . n A 1 240 GLY 240 238 238 GLY GLY A . n A 1 241 PRO 241 239 239 PRO PRO A . n A 1 242 LEU 242 240 240 LEU LEU A . n A 1 243 LYS 243 241 241 LYS LYS A . n A 1 244 TYR 244 242 242 TYR TYR A . n A 1 245 MET 245 243 243 MET MET A . n A 1 246 GLY 246 244 244 GLY GLY A . n A 1 247 MET 247 245 245 MET MET A . n A 1 248 GLY 248 246 246 GLY GLY A . n A 1 249 ARG 249 247 247 ARG ARG A . n A 1 250 LEU 250 248 248 LEU LEU A . n A 1 251 PRO 251 249 249 PRO PRO A . n A 1 252 PRO 252 250 250 PRO PRO A . n A 1 253 ARG 253 251 251 ARG ARG A . n A 1 254 ILE 254 252 252 ILE ILE A . n A 1 255 VAL 255 253 ? ? ? A . n A 1 256 ARG 256 254 ? ? ? A . n A 1 257 ASP 257 255 ? ? ? A . n A 1 258 LYS 258 256 ? ? ? A . n A 1 259 ALA 259 257 ? ? ? A . n A 1 260 GLY 260 258 ? ? ? A . n A 1 261 ARG 261 259 ? ? ? A . n A 1 262 GLU 262 260 ? ? ? A . n A 1 263 ASN 263 261 261 ASN ASN A . n A 1 264 THR 264 262 262 THR THR A . n A 1 265 LYS 265 263 263 LYS LYS A . n A 1 266 VAL 266 264 264 VAL VAL A . n A 1 267 TYR 267 265 265 TYR TYR A . n A 1 268 LYS 268 266 266 LYS LYS A . n A 1 269 ALA 269 267 267 ALA ALA A . n A 1 270 ARG 270 268 268 ARG ARG A . n A 1 271 ARG 271 269 269 ARG ARG A . n A 1 272 VAL 272 270 270 VAL VAL A . n A 1 273 ASP 273 271 271 ASP ASP A . n A 1 274 ILE 274 272 272 ILE ILE A . n A 1 275 ARG 275 273 273 ARG ARG A . n A 1 276 LEU 276 274 274 LEU LEU A . n A 1 277 ILE 277 275 275 ILE ILE A . n A 1 278 GLU 278 276 276 GLU GLU A . n A 1 279 THR 279 277 277 THR THR A . n A 1 280 LYS 280 278 278 LYS LYS A . n A 1 281 SER 281 279 279 SER SER A . n A 1 282 VAL 282 280 280 VAL VAL A . n A 1 283 PRO 283 281 281 PRO PRO A . n A 1 284 THR 284 282 282 THR THR A . n A 1 285 ALA 285 283 283 ALA ALA A . n A 1 286 MET 286 284 284 MET MET A . n A 1 287 LEU 287 285 285 LEU LEU A . n A 1 288 THR 288 286 286 THR THR A . n A 1 289 PHE 289 287 287 PHE PHE A . n A 1 290 THR 290 288 288 THR THR A . n A 1 291 GLY 291 289 289 GLY GLY A . n A 1 292 SER 292 290 290 SER SER A . n A 1 293 LYS 293 291 291 LYS LYS A . n A 1 294 ASN 294 292 292 ASN ASN A . n A 1 295 PHE 295 293 293 PHE PHE A . n A 1 296 ASN 296 294 294 ASN ASN A . n A 1 297 VAL 297 295 295 VAL VAL A . n A 1 298 ILE 298 296 296 ILE ILE A . n A 1 299 MET 299 297 297 MET MET A . n A 1 300 ARG 300 298 298 ARG ARG A . n A 1 301 GLN 301 299 299 GLN GLN A . n A 1 302 ALA 302 300 300 ALA ALA A . n A 1 303 ALA 303 301 301 ALA ALA A . n A 1 304 ILE 304 302 302 ILE ILE A . n A 1 305 SER 305 303 303 SER SER A . n A 1 306 LYS 306 304 304 LYS LYS A . n A 1 307 GLY 307 305 305 GLY GLY A . n A 1 308 TYR 308 306 306 TYR TYR A . n A 1 309 LEU 309 307 307 LEU LEU A . n A 1 310 LEU 310 308 308 LEU LEU A . n A 1 311 ASN 311 309 309 ASN ASN A . n A 1 312 GLU 312 310 310 GLU GLU A . n A 1 313 TYR 313 311 311 TYR TYR A . n A 1 314 GLY 314 312 312 GLY GLY A . n A 1 315 LEU 315 313 313 LEU LEU A . n A 1 316 PHE 316 314 314 PHE PHE A . n A 1 317 LYS 317 315 315 LYS LYS A . n A 1 318 LEU 318 316 316 LEU LEU A . n A 1 319 GLY 319 317 317 GLY GLY A . n A 1 320 THR 320 318 318 THR THR A . n A 1 321 PRO 321 319 319 PRO PRO A . n A 1 322 GLU 322 320 320 GLU GLU A . n A 1 323 GLU 323 321 321 GLU GLU A . n A 1 324 ALA 324 322 322 ALA ALA A . n A 1 325 ARG 325 323 323 ARG ARG A . n A 1 326 ALA 326 324 324 ALA ALA A . n A 1 327 LEU 327 325 325 LEU LEU A . n A 1 328 TYR 328 326 326 TYR TYR A . n A 1 329 GLU 329 327 327 GLU GLU A . n A 1 330 ARG 330 328 328 ARG ARG A . n A 1 331 ILE 331 329 329 ILE ILE A . n A 1 332 GLY 332 330 330 GLY GLY A . n A 1 333 ILE 333 331 331 ILE ILE A . n A 1 334 ARG 334 332 332 ARG ARG A . n A 1 335 GLY 335 333 333 GLY GLY A . n A 1 336 LYS 336 334 334 LYS LYS A . n A 1 337 ASN 337 335 335 ASN ASN A . n A 1 338 ALA 338 336 336 ALA ALA A . n A 1 339 GLY 339 337 337 GLY GLY A . n A 1 340 GLU 340 338 338 GLU GLU A . n A 1 341 GLU 341 339 339 GLU GLU A . n A 1 342 LEU 342 340 340 LEU LEU A . n A 1 343 GLY 343 341 341 GLY GLY A . n A 1 344 VAL 344 342 342 VAL VAL A . n A 1 345 PRO 345 343 343 PRO PRO A . n A 1 346 LYS 346 344 344 LYS LYS A . n A 1 347 ASP 347 345 345 ASP ASP A . n A 1 348 GLU 348 346 346 GLU GLU A . n A 1 349 LEU 349 347 347 LEU LEU A . n A 1 350 GLU 350 348 348 GLU GLU A . n A 1 351 ASP 351 349 349 ASP ASP A . n A 1 352 LYS 352 350 350 LYS LYS A . n A 1 353 ARG 353 351 351 ARG ARG A . n A 1 354 VAL 354 352 352 VAL VAL A . n A 1 355 GLU 355 353 353 GLU GLU A . n A 1 356 VAL 356 354 354 VAL VAL A . n A 1 357 ARG 357 355 355 ARG ARG A . n A 1 358 SER 358 356 356 SER SER A . n A 1 359 GLU 359 357 357 GLU GLU A . n A 1 360 GLN 360 358 358 GLN GLN A . n A 1 361 ASP 361 359 359 ASP ASP A . n A 1 362 VAL 362 360 360 VAL VAL A . n A 1 363 PHE 363 361 361 PHE PHE A . n A 1 364 ASP 364 362 362 ASP ASP A . n A 1 365 VAL 365 363 363 VAL VAL A . n A 1 366 LEU 366 364 364 LEU LEU A . n A 1 367 GLY 367 365 365 GLY GLY A . n A 1 368 MET 368 366 366 MET MET A . n A 1 369 PRO 369 367 367 PRO PRO A . n A 1 370 TYR 370 368 368 TYR TYR A . n A 1 371 ALA 371 369 369 ALA ALA A . n A 1 372 LYS 372 370 370 LYS LYS A . n A 1 373 PRO 373 371 371 PRO PRO A . n A 1 374 GLU 374 372 372 GLU GLU A . n A 1 375 ASN 375 373 373 ASN ASN A . n A 1 376 ARG 376 374 374 ARG ARG A . n A 1 377 ASP 377 375 375 ASP ASP A . n A 1 378 PRO 378 376 376 PRO PRO A . n B 2 1 DC 1 1 1 DC Cd C . n B 2 2 DA 2 2 2 DA Ad C . n B 2 3 DG 3 3 3 DG Gd C . n B 2 4 DT 4 4 4 DT Td C . n B 2 5 DA 5 5 5 DA Ad C . n B 2 6 DC 6 6 6 DC Cd C . n B 2 7 DT 7 7 7 DT Td C . n C 3 1 DG 1 1 1 DG Gd D . n C 3 2 DC 2 2 2 DC Cd D . n C 3 3 DC 3 3 ? ? ? D . n C 3 4 DG 4 4 ? ? ? D . n D 4 1 DC 1 1 ? ? ? B . n D 4 2 DG 2 2 2 DG Gd B . n D 4 3 DG 3 3 3 DG Gd B . n D 4 4 DC 4 4 4 DC Cd B . n D 4 5 DA 5 5 5 DA Ad B . n D 4 6 DG 6 6 6 DG Gd B . n D 4 7 DT 7 7 7 DT Td B . n D 4 8 DA 8 8 8 DA Ad B . n D 4 9 DC 9 9 9 DC Cd B . n D 4 10 DT 10 10 10 DT Td B . n D 4 11 DG 11 11 11 DG Gd B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA 1 401 377 NA NA A . F 6 HOH 1 501 560 HOH HOH A . F 6 HOH 2 502 566 HOH HOH A . F 6 HOH 3 503 396 HOH HOH A . F 6 HOH 4 504 441 HOH HOH A . F 6 HOH 5 505 549 HOH HOH A . F 6 HOH 6 506 389 HOH HOH A . F 6 HOH 7 507 543 HOH HOH A . F 6 HOH 8 508 473 HOH HOH A . F 6 HOH 9 509 461 HOH HOH A . F 6 HOH 10 510 380 HOH HOH A . F 6 HOH 11 511 420 HOH HOH A . F 6 HOH 12 512 471 HOH HOH A . F 6 HOH 13 513 495 HOH HOH A . F 6 HOH 14 514 408 HOH HOH A . F 6 HOH 15 515 532 HOH HOH A . F 6 HOH 16 516 452 HOH HOH A . F 6 HOH 17 517 409 HOH HOH A . F 6 HOH 18 518 539 HOH HOH A . F 6 HOH 19 519 515 HOH HOH A . F 6 HOH 20 520 489 HOH HOH A . F 6 HOH 21 521 458 HOH HOH A . F 6 HOH 22 522 479 HOH HOH A . F 6 HOH 23 523 417 HOH HOH A . F 6 HOH 24 524 403 HOH HOH A . F 6 HOH 25 525 557 HOH HOH A . F 6 HOH 26 526 544 HOH HOH A . F 6 HOH 27 527 401 HOH HOH A . F 6 HOH 28 528 468 HOH HOH A . F 6 HOH 29 529 431 HOH HOH A . F 6 HOH 30 530 482 HOH HOH A . F 6 HOH 31 531 584 HOH HOH A . F 6 HOH 32 532 561 HOH HOH A . F 6 HOH 33 533 573 HOH HOH A . F 6 HOH 34 534 552 HOH HOH A . F 6 HOH 35 535 493 HOH HOH A . F 6 HOH 36 536 547 HOH HOH A . F 6 HOH 37 537 429 HOH HOH A . F 6 HOH 38 538 586 HOH HOH A . F 6 HOH 39 539 502 HOH HOH A . F 6 HOH 40 540 534 HOH HOH A . F 6 HOH 41 541 519 HOH HOH A . F 6 HOH 42 542 591 HOH HOH A . F 6 HOH 43 543 505 HOH HOH A . F 6 HOH 44 544 590 HOH HOH A . F 6 HOH 45 545 535 HOH HOH A . F 6 HOH 46 546 511 HOH HOH A . F 6 HOH 47 547 545 HOH HOH A . F 6 HOH 48 548 531 HOH HOH A . F 6 HOH 49 549 558 HOH HOH A . F 6 HOH 50 550 592 HOH HOH A . F 6 HOH 51 551 564 HOH HOH A . F 6 HOH 52 552 501 HOH HOH A . F 6 HOH 53 553 569 HOH HOH A . F 6 HOH 54 554 589 HOH HOH A . F 6 HOH 55 555 570 HOH HOH A . F 6 HOH 56 556 455 HOH HOH A . F 6 HOH 57 557 378 HOH HOH A . F 6 HOH 58 558 379 HOH HOH A . F 6 HOH 59 559 381 HOH HOH A . F 6 HOH 60 560 382 HOH HOH A . F 6 HOH 61 561 383 HOH HOH A . F 6 HOH 62 562 384 HOH HOH A . F 6 HOH 63 563 385 HOH HOH A . F 6 HOH 64 564 386 HOH HOH A . F 6 HOH 65 565 387 HOH HOH A . F 6 HOH 66 566 388 HOH HOH A . F 6 HOH 67 567 390 HOH HOH A . F 6 HOH 68 568 391 HOH HOH A . F 6 HOH 69 569 392 HOH HOH A . F 6 HOH 70 570 393 HOH HOH A . F 6 HOH 71 571 394 HOH HOH A . F 6 HOH 72 572 395 HOH HOH A . F 6 HOH 73 573 397 HOH HOH A . F 6 HOH 74 574 398 HOH HOH A . F 6 HOH 75 575 399 HOH HOH A . F 6 HOH 76 576 400 HOH HOH A . F 6 HOH 77 577 402 HOH HOH A . F 6 HOH 78 578 404 HOH HOH A . F 6 HOH 79 579 405 HOH HOH A . F 6 HOH 80 580 406 HOH HOH A . F 6 HOH 81 581 407 HOH HOH A . F 6 HOH 82 582 410 HOH HOH A . F 6 HOH 83 583 411 HOH HOH A . F 6 HOH 84 584 412 HOH HOH A . F 6 HOH 85 585 413 HOH HOH A . F 6 HOH 86 586 414 HOH HOH A . F 6 HOH 87 587 415 HOH HOH A . F 6 HOH 88 588 416 HOH HOH A . F 6 HOH 89 589 418 HOH HOH A . F 6 HOH 90 590 419 HOH HOH A . F 6 HOH 91 591 421 HOH HOH A . F 6 HOH 92 592 422 HOH HOH A . F 6 HOH 93 593 423 HOH HOH A . F 6 HOH 94 594 424 HOH HOH A . F 6 HOH 95 595 425 HOH HOH A . F 6 HOH 96 596 426 HOH HOH A . F 6 HOH 97 597 427 HOH HOH A . F 6 HOH 98 598 428 HOH HOH A . F 6 HOH 99 599 430 HOH HOH A . F 6 HOH 100 600 432 HOH HOH A . F 6 HOH 101 601 433 HOH HOH A . F 6 HOH 102 602 434 HOH HOH A . F 6 HOH 103 603 435 HOH HOH A . F 6 HOH 104 604 436 HOH HOH A . F 6 HOH 105 605 437 HOH HOH A . F 6 HOH 106 606 438 HOH HOH A . F 6 HOH 107 607 439 HOH HOH A . F 6 HOH 108 608 440 HOH HOH A . F 6 HOH 109 609 442 HOH HOH A . F 6 HOH 110 610 443 HOH HOH A . F 6 HOH 111 611 444 HOH HOH A . F 6 HOH 112 612 445 HOH HOH A . F 6 HOH 113 613 446 HOH HOH A . F 6 HOH 114 614 447 HOH HOH A . F 6 HOH 115 615 448 HOH HOH A . F 6 HOH 116 616 449 HOH HOH A . F 6 HOH 117 617 450 HOH HOH A . F 6 HOH 118 618 451 HOH HOH A . F 6 HOH 119 619 453 HOH HOH A . F 6 HOH 120 620 454 HOH HOH A . F 6 HOH 121 621 456 HOH HOH A . F 6 HOH 122 622 457 HOH HOH A . F 6 HOH 123 623 459 HOH HOH A . F 6 HOH 124 624 460 HOH HOH A . F 6 HOH 125 625 462 HOH HOH A . F 6 HOH 126 626 463 HOH HOH A . F 6 HOH 127 627 464 HOH HOH A . F 6 HOH 128 628 465 HOH HOH A . F 6 HOH 129 629 466 HOH HOH A . F 6 HOH 130 630 467 HOH HOH A . F 6 HOH 131 631 469 HOH HOH A . F 6 HOH 132 632 470 HOH HOH A . F 6 HOH 133 633 472 HOH HOH A . F 6 HOH 134 634 474 HOH HOH A . F 6 HOH 135 635 475 HOH HOH A . F 6 HOH 136 636 476 HOH HOH A . F 6 HOH 137 637 477 HOH HOH A . F 6 HOH 138 638 478 HOH HOH A . F 6 HOH 139 639 480 HOH HOH A . F 6 HOH 140 640 481 HOH HOH A . F 6 HOH 141 641 483 HOH HOH A . F 6 HOH 142 642 484 HOH HOH A . F 6 HOH 143 643 485 HOH HOH A . F 6 HOH 144 644 486 HOH HOH A . F 6 HOH 145 645 487 HOH HOH A . F 6 HOH 146 646 488 HOH HOH A . F 6 HOH 147 647 490 HOH HOH A . F 6 HOH 148 648 491 HOH HOH A . F 6 HOH 149 649 492 HOH HOH A . F 6 HOH 150 650 494 HOH HOH A . F 6 HOH 151 651 496 HOH HOH A . F 6 HOH 152 652 497 HOH HOH A . F 6 HOH 153 653 498 HOH HOH A . F 6 HOH 154 654 499 HOH HOH A . F 6 HOH 155 655 500 HOH HOH A . F 6 HOH 156 656 503 HOH HOH A . F 6 HOH 157 657 504 HOH HOH A . F 6 HOH 158 658 506 HOH HOH A . F 6 HOH 159 659 507 HOH HOH A . F 6 HOH 160 660 508 HOH HOH A . F 6 HOH 161 661 509 HOH HOH A . F 6 HOH 162 662 510 HOH HOH A . F 6 HOH 163 663 512 HOH HOH A . F 6 HOH 164 664 513 HOH HOH A . F 6 HOH 165 665 514 HOH HOH A . F 6 HOH 166 666 516 HOH HOH A . F 6 HOH 167 667 517 HOH HOH A . F 6 HOH 168 668 518 HOH HOH A . F 6 HOH 169 669 520 HOH HOH A . F 6 HOH 170 670 521 HOH HOH A . F 6 HOH 171 671 522 HOH HOH A . F 6 HOH 172 672 523 HOH HOH A . F 6 HOH 173 673 524 HOH HOH A . F 6 HOH 174 674 525 HOH HOH A . F 6 HOH 175 675 526 HOH HOH A . F 6 HOH 176 676 527 HOH HOH A . F 6 HOH 177 677 528 HOH HOH A . F 6 HOH 178 678 529 HOH HOH A . F 6 HOH 179 679 530 HOH HOH A . F 6 HOH 180 680 533 HOH HOH A . F 6 HOH 181 681 536 HOH HOH A . F 6 HOH 182 682 537 HOH HOH A . F 6 HOH 183 683 538 HOH HOH A . F 6 HOH 184 684 540 HOH HOH A . F 6 HOH 185 685 541 HOH HOH A . F 6 HOH 186 686 542 HOH HOH A . F 6 HOH 187 687 546 HOH HOH A . F 6 HOH 188 688 548 HOH HOH A . F 6 HOH 189 689 550 HOH HOH A . F 6 HOH 190 690 551 HOH HOH A . F 6 HOH 191 691 553 HOH HOH A . F 6 HOH 192 692 554 HOH HOH A . F 6 HOH 193 693 555 HOH HOH A . F 6 HOH 194 694 556 HOH HOH A . F 6 HOH 195 695 559 HOH HOH A . F 6 HOH 196 696 562 HOH HOH A . F 6 HOH 197 697 563 HOH HOH A . F 6 HOH 198 698 565 HOH HOH A . F 6 HOH 199 699 567 HOH HOH A . F 6 HOH 200 700 568 HOH HOH A . F 6 HOH 201 701 571 HOH HOH A . F 6 HOH 202 702 572 HOH HOH A . F 6 HOH 203 703 574 HOH HOH A . F 6 HOH 204 704 575 HOH HOH A . F 6 HOH 205 705 576 HOH HOH A . F 6 HOH 206 706 577 HOH HOH A . F 6 HOH 207 707 578 HOH HOH A . F 6 HOH 208 708 579 HOH HOH A . F 6 HOH 209 709 580 HOH HOH A . F 6 HOH 210 710 581 HOH HOH A . F 6 HOH 211 711 582 HOH HOH A . F 6 HOH 212 712 583 HOH HOH A . F 6 HOH 213 713 585 HOH HOH A . F 6 HOH 214 714 587 HOH HOH A . F 6 HOH 215 715 588 HOH HOH A . G 6 HOH 1 101 8 HOH HOH C . G 6 HOH 2 102 9 HOH HOH C . G 6 HOH 3 103 10 HOH HOH C . G 6 HOH 4 104 11 HOH HOH C . G 6 HOH 5 105 12 HOH HOH C . G 6 HOH 6 106 13 HOH HOH C . G 6 HOH 7 107 14 HOH HOH C . G 6 HOH 8 108 15 HOH HOH C . G 6 HOH 9 109 16 HOH HOH C . G 6 HOH 10 110 17 HOH HOH C . G 6 HOH 11 111 18 HOH HOH C . G 6 HOH 12 112 19 HOH HOH C . G 6 HOH 13 113 20 HOH HOH C . G 6 HOH 14 114 21 HOH HOH C . G 6 HOH 15 115 22 HOH HOH C . G 6 HOH 16 116 23 HOH HOH C . G 6 HOH 17 117 24 HOH HOH C . H 6 HOH 1 101 22 HOH HOH B . H 6 HOH 2 102 13 HOH HOH B . H 6 HOH 3 103 20 HOH HOH B . H 6 HOH 4 104 15 HOH HOH B . H 6 HOH 5 105 12 HOH HOH B . H 6 HOH 6 106 14 HOH HOH B . H 6 HOH 7 107 16 HOH HOH B . H 6 HOH 8 108 17 HOH HOH B . H 6 HOH 9 109 18 HOH HOH B . H 6 HOH 10 110 19 HOH HOH B . H 6 HOH 11 111 21 HOH HOH B . H 6 HOH 12 112 23 HOH HOH B . H 6 HOH 13 113 24 HOH HOH B . H 6 HOH 14 114 25 HOH HOH B . H 6 HOH 15 115 26 HOH HOH B . H 6 HOH 16 116 27 HOH HOH B . H 6 HOH 17 117 28 HOH HOH B . H 6 HOH 18 118 29 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4040 ? 1 MORE -35 ? 1 'SSA (A^2)' 16190 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 527 ? F HOH . 2 1 A HOH 542 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 102 ? A THR 100 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? A VAL 104 ? A VAL 102 ? 1_555 95.8 ? 2 O ? A THR 102 ? A THR 100 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? A PHE 107 ? A PHE 105 ? 1_555 91.3 ? 3 O ? A VAL 104 ? A VAL 102 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? A PHE 107 ? A PHE 105 ? 1_555 76.0 ? 4 O ? A THR 102 ? A THR 100 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? F HOH . ? A HOH 646 ? 1_555 87.7 ? 5 O ? A VAL 104 ? A VAL 102 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? F HOH . ? A HOH 646 ? 1_555 83.9 ? 6 O ? A PHE 107 ? A PHE 105 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? F HOH . ? A HOH 646 ? 1_555 159.7 ? 7 O ? A THR 102 ? A THR 100 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? B DA 5 ? C DA 5 ? 1_555 171.2 ? 8 O ? A VAL 104 ? A VAL 102 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? B DA 5 ? C DA 5 ? 1_555 82.6 ? 9 O ? A PHE 107 ? A PHE 105 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? B DA 5 ? C DA 5 ? 1_555 79.9 ? 10 O ? F HOH . ? A HOH 646 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? B DA 5 ? C DA 5 ? 1_555 100.7 ? 11 O ? A THR 102 ? A THR 100 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? G HOH . ? C HOH 117 ? 1_555 79.1 ? 12 O ? A VAL 104 ? A VAL 102 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? G HOH . ? C HOH 117 ? 1_555 167.1 ? 13 O ? A PHE 107 ? A PHE 105 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? G HOH . ? C HOH 117 ? 1_555 92.2 ? 14 O ? F HOH . ? A HOH 646 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? G HOH . ? C HOH 117 ? 1_555 107.5 ? 15 OP1 ? B DA 5 ? C DA 5 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? G HOH . ? C HOH 117 ? 1_555 100.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-06 2 'Structure model' 1 1 2017-09-06 3 'Structure model' 1 2 2019-12-25 4 'Structure model' 1 3 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' Other 4 2 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Author supporting evidence' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_audit_support 3 2 'Structure model' pdbx_database_status 4 2 'Structure model' pdbx_entity_src_syn 5 2 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' pdbx_audit_support 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 10 4 'Structure model' pdbx_initial_refinement_model 11 4 'Structure model' pdbx_struct_conn_angle 12 4 'Structure model' refine_hist 13 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 2 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 2 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 3 'Structure model' '_pdbx_audit_support.funding_organization' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.9780 _pdbx_refine_tls.origin_y -34.8218 _pdbx_refine_tls.origin_z -8.3482 _pdbx_refine_tls.T[1][1] 0.1832 _pdbx_refine_tls.T[2][2] 0.1342 _pdbx_refine_tls.T[3][3] 0.1402 _pdbx_refine_tls.T[1][2] 0.0018 _pdbx_refine_tls.T[1][3] 0.0389 _pdbx_refine_tls.T[2][3] 0.0084 _pdbx_refine_tls.L[1][1] 1.2033 _pdbx_refine_tls.L[2][2] 0.9346 _pdbx_refine_tls.L[3][3] 0.6783 _pdbx_refine_tls.L[1][2] -0.5622 _pdbx_refine_tls.L[1][3] -0.6819 _pdbx_refine_tls.L[2][3] 0.3895 _pdbx_refine_tls.S[1][1] 0.1093 _pdbx_refine_tls.S[1][2] -0.0669 _pdbx_refine_tls.S[1][3] 0.0329 _pdbx_refine_tls.S[2][1] 0.0630 _pdbx_refine_tls.S[2][2] -0.0528 _pdbx_refine_tls.S[2][3] 0.0153 _pdbx_refine_tls.S[3][1] -0.0646 _pdbx_refine_tls.S[3][2] 0.0016 _pdbx_refine_tls.S[3][3] -0.0444 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ;chain 'A' and (resid 32 through 376 ) ; # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(phenix.refine: 1.9_1692)' _software.pdbx_ordinal 1 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.478 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.129 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 110.58 108.30 2.28 0.30 N 2 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 110.79 108.30 2.49 0.30 N 3 1 "O4'" C DC 6 ? ? "C4'" C DC 6 ? ? "C3'" C DC 6 ? ? 101.81 104.50 -2.69 0.40 N 4 1 OP1 D DG 1 ? ? P D DG 1 ? ? OP2 D DG 1 ? ? 107.66 119.60 -11.94 1.50 N 5 1 "C3'" B DC 4 ? ? "C2'" B DC 4 ? ? "C1'" B DC 4 ? ? 97.57 102.40 -4.83 0.80 N 6 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 113.98 108.30 5.68 0.30 N 7 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 110.20 108.30 1.90 0.30 N 8 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 110.56 108.30 2.26 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 182 ? ? -112.65 -131.69 2 1 ARG A 332 ? ? -23.39 -66.68 3 1 LYS A 334 ? ? -117.39 -84.28 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 93 ? CG ? A LEU 95 CG 2 1 Y 1 A LEU 93 ? CD1 ? A LEU 95 CD1 3 1 Y 1 A LEU 93 ? CD2 ? A LEU 95 CD2 4 1 Y 1 A LYS 94 ? CG ? A LYS 96 CG 5 1 Y 1 A LYS 94 ? CD ? A LYS 96 CD 6 1 Y 1 A LYS 94 ? CE ? A LYS 96 CE 7 1 Y 1 A LYS 94 ? NZ ? A LYS 96 NZ 8 1 Y 1 A ARG 108 ? CD ? A ARG 110 CD 9 1 Y 1 A ARG 108 ? NE ? A ARG 110 NE 10 1 Y 1 A ARG 108 ? CZ ? A ARG 110 CZ 11 1 Y 1 A ARG 108 ? NH1 ? A ARG 110 NH1 12 1 Y 1 A ARG 108 ? NH2 ? A ARG 110 NH2 13 1 Y 1 A GLU 320 ? CG ? A GLU 322 CG 14 1 Y 1 A GLU 320 ? CD ? A GLU 322 CD 15 1 Y 1 A GLU 320 ? OE1 ? A GLU 322 OE1 16 1 Y 1 A GLU 320 ? OE2 ? A GLU 322 OE2 17 1 Y 1 A ARG 332 ? CG ? A ARG 334 CG 18 1 Y 1 A ARG 332 ? CD ? A ARG 334 CD 19 1 Y 1 A ARG 332 ? NE ? A ARG 334 NE 20 1 Y 1 A ARG 332 ? CZ ? A ARG 334 CZ 21 1 Y 1 A ARG 332 ? NH1 ? A ARG 334 NH1 22 1 Y 1 A ARG 332 ? NH2 ? A ARG 334 NH2 23 1 Y 1 B DG 2 ? P ? D DG 2 P 24 1 Y 1 B DG 2 ? OP1 ? D DG 2 OP1 25 1 Y 1 B DG 2 ? OP2 ? D DG 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A HIS 0 ? A HIS 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A LEU 2 ? A LEU 4 5 1 Y 1 A ARG 3 ? A ARG 5 6 1 Y 1 A ARG 4 ? A ARG 6 7 1 Y 1 A LYS 5 ? A LYS 7 8 1 Y 1 A PHE 6 ? A PHE 8 9 1 Y 1 A LEU 7 ? A LEU 9 10 1 Y 1 A ARG 8 ? A ARG 10 11 1 Y 1 A ARG 9 ? A ARG 11 12 1 Y 1 A ASP 10 ? A ASP 12 13 1 Y 1 A HIS 11 ? A HIS 13 14 1 Y 1 A ARG 12 ? A ARG 14 15 1 Y 1 A GLU 13 ? A GLU 15 16 1 Y 1 A ASN 14 ? A ASN 16 17 1 Y 1 A ILE 15 ? A ILE 17 18 1 Y 1 A ILE 16 ? A ILE 18 19 1 Y 1 A ARG 17 ? A ARG 19 20 1 Y 1 A ILE 18 ? A ILE 20 21 1 Y 1 A PHE 19 ? A PHE 21 22 1 Y 1 A GLN 20 ? A GLN 22 23 1 Y 1 A GLU 21 ? A GLU 23 24 1 Y 1 A MET 22 ? A MET 24 25 1 Y 1 A ALA 23 ? A ALA 25 26 1 Y 1 A ASP 24 ? A ASP 26 27 1 Y 1 A LEU 25 ? A LEU 27 28 1 Y 1 A ASN 26 ? A ASN 28 29 1 Y 1 A ASN 27 ? A ASN 29 30 1 Y 1 A ALA 28 ? A ALA 30 31 1 Y 1 A LEU 29 ? A LEU 31 32 1 Y 1 A GLY 30 ? A GLY 32 33 1 Y 1 A GLU 31 ? A GLU 33 34 1 Y 1 A SER 36 ? A SER 38 35 1 Y 1 A SER 37 ? A SER 39 36 1 Y 1 A TYR 38 ? A TYR 40 37 1 Y 1 A HIS 39 ? A HIS 41 38 1 Y 1 A ARG 40 ? A ARG 42 39 1 Y 1 A SER 41 ? A SER 43 40 1 Y 1 A ILE 42 ? A ILE 44 41 1 Y 1 A GLU 43 ? A GLU 45 42 1 Y 1 A SER 44 ? A SER 46 43 1 Y 1 A LEU 45 ? A LEU 47 44 1 Y 1 A LYS 46 ? A LYS 48 45 1 Y 1 A THR 47 ? A THR 49 46 1 Y 1 A ASN 48 ? A ASN 50 47 1 Y 1 A LEU 49 ? A LEU 51 48 1 Y 1 A ASP 50 ? A ASP 52 49 1 Y 1 A LYS 51 ? A LYS 53 50 1 Y 1 A PRO 52 ? A PRO 54 51 1 Y 1 A LEU 53 ? A LEU 55 52 1 Y 1 A ASN 54 ? A ASN 56 53 1 Y 1 A THR 55 ? A THR 57 54 1 Y 1 A PRO 56 ? A PRO 58 55 1 Y 1 A GLN 57 ? A GLN 59 56 1 Y 1 A ASP 58 ? A ASP 60 57 1 Y 1 A LEU 59 ? A LEU 61 58 1 Y 1 A LYS 60 ? A LYS 62 59 1 Y 1 A ALA 61 ? A ALA 63 60 1 Y 1 A PHE 62 ? A PHE 64 61 1 Y 1 A SER 63 ? A SER 65 62 1 Y 1 A GLY 64 ? A GLY 66 63 1 Y 1 A PHE 65 ? A PHE 67 64 1 Y 1 A GLY 66 ? A GLY 68 65 1 Y 1 A ALA 67 ? A ALA 69 66 1 Y 1 A LYS 68 ? A LYS 70 67 1 Y 1 A LEU 69 ? A LEU 71 68 1 Y 1 A LEU 70 ? A LEU 72 69 1 Y 1 A LYS 71 ? A LYS 73 70 1 Y 1 A LYS 72 ? A LYS 74 71 1 Y 1 A ALA 73 ? A ALA 75 72 1 Y 1 A GLU 74 ? A GLU 76 73 1 Y 1 A GLU 75 ? A GLU 77 74 1 Y 1 A ILE 76 ? A ILE 78 75 1 Y 1 A MET 77 ? A MET 79 76 1 Y 1 A ALA 78 ? A ALA 80 77 1 Y 1 A THR 79 ? A THR 81 78 1 Y 1 A GLY 80 ? A GLY 82 79 1 Y 1 A LYS 81 ? A LYS 83 80 1 Y 1 A LEU 82 ? A LEU 84 81 1 Y 1 A GLU 83 ? A GLU 85 82 1 Y 1 A GLU 84 ? A GLU 86 83 1 Y 1 A LEU 85 ? A LEU 87 84 1 Y 1 A GLU 86 ? A GLU 88 85 1 Y 1 A SER 87 ? A SER 89 86 1 Y 1 A LYS 88 ? A LYS 90 87 1 Y 1 A THR 89 ? A THR 91 88 1 Y 1 A LYS 90 ? A LYS 92 89 1 Y 1 A VAL 253 ? A VAL 255 90 1 Y 1 A ARG 254 ? A ARG 256 91 1 Y 1 A ASP 255 ? A ASP 257 92 1 Y 1 A LYS 256 ? A LYS 258 93 1 Y 1 A ALA 257 ? A ALA 259 94 1 Y 1 A GLY 258 ? A GLY 260 95 1 Y 1 A ARG 259 ? A ARG 261 96 1 Y 1 A GLU 260 ? A GLU 262 97 1 Y 1 D DC 3 ? C DC 3 98 1 Y 1 D DG 4 ? C DG 4 99 1 Y 1 B DC 1 ? D DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 NA NA NA N N 393 PHE N N N N 394 PHE CA C N S 395 PHE C C N N 396 PHE O O N N 397 PHE CB C N N 398 PHE CG C Y N 399 PHE CD1 C Y N 400 PHE CD2 C Y N 401 PHE CE1 C Y N 402 PHE CE2 C Y N 403 PHE CZ C Y N 404 PHE OXT O N N 405 PHE H H N N 406 PHE H2 H N N 407 PHE HA H N N 408 PHE HB2 H N N 409 PHE HB3 H N N 410 PHE HD1 H N N 411 PHE HD2 H N N 412 PHE HE1 H N N 413 PHE HE2 H N N 414 PHE HZ H N N 415 PHE HXT H N N 416 PRO N N N N 417 PRO CA C N S 418 PRO C C N N 419 PRO O O N N 420 PRO CB C N N 421 PRO CG C N N 422 PRO CD C N N 423 PRO OXT O N N 424 PRO H H N N 425 PRO HA H N N 426 PRO HB2 H N N 427 PRO HB3 H N N 428 PRO HG2 H N N 429 PRO HG3 H N N 430 PRO HD2 H N N 431 PRO HD3 H N N 432 PRO HXT H N N 433 SER N N N N 434 SER CA C N S 435 SER C C N N 436 SER O O N N 437 SER CB C N N 438 SER OG O N N 439 SER OXT O N N 440 SER H H N N 441 SER H2 H N N 442 SER HA H N N 443 SER HB2 H N N 444 SER HB3 H N N 445 SER HG H N N 446 SER HXT H N N 447 THR N N N N 448 THR CA C N S 449 THR C C N N 450 THR O O N N 451 THR CB C N R 452 THR OG1 O N N 453 THR CG2 C N N 454 THR OXT O N N 455 THR H H N N 456 THR H2 H N N 457 THR HA H N N 458 THR HB H N N 459 THR HG1 H N N 460 THR HG21 H N N 461 THR HG22 H N N 462 THR HG23 H N N 463 THR HXT H N N 464 TYR N N N N 465 TYR CA C N S 466 TYR C C N N 467 TYR O O N N 468 TYR CB C N N 469 TYR CG C Y N 470 TYR CD1 C Y N 471 TYR CD2 C Y N 472 TYR CE1 C Y N 473 TYR CE2 C Y N 474 TYR CZ C Y N 475 TYR OH O N N 476 TYR OXT O N N 477 TYR H H N N 478 TYR H2 H N N 479 TYR HA H N N 480 TYR HB2 H N N 481 TYR HB3 H N N 482 TYR HD1 H N N 483 TYR HD2 H N N 484 TYR HE1 H N N 485 TYR HE2 H N N 486 TYR HH H N N 487 TYR HXT H N N 488 VAL N N N N 489 VAL CA C N S 490 VAL C C N N 491 VAL O O N N 492 VAL CB C N N 493 VAL CG1 C N N 494 VAL CG2 C N N 495 VAL OXT O N N 496 VAL H H N N 497 VAL H2 H N N 498 VAL HA H N N 499 VAL HB H N N 500 VAL HG11 H N N 501 VAL HG12 H N N 502 VAL HG13 H N N 503 VAL HG21 H N N 504 VAL HG22 H N N 505 VAL HG23 H N N 506 VAL HXT H N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P4P 'double helix' 4P4P 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 D DG 11 1_555 0.294 -0.327 -0.313 -9.001 -13.930 2.714 1 C_DC1:DG11_B C 1 ? B 11 ? 19 1 1 B DA 2 1_555 D DT 10 1_555 0.625 -0.157 0.027 1.774 -15.750 7.323 2 C_DA2:DT10_B C 2 ? B 10 ? 20 1 1 B DG 3 1_555 D DC 9 1_555 -0.064 -0.145 0.034 -3.791 -5.517 -0.379 3 C_DG3:DC9_B C 3 ? B 9 ? 19 1 1 B DT 4 1_555 D DA 8 1_555 0.356 -0.120 -0.359 3.007 -1.375 3.934 4 C_DT4:DA8_B C 4 ? B 8 ? 20 1 1 B DA 5 1_555 D DT 7 1_555 0.000 -0.118 -0.447 -12.882 -8.008 0.631 5 C_DA5:DT7_B C 5 ? B 7 ? 20 1 1 B DC 6 1_555 D DG 6 1_555 0.133 0.027 0.251 -5.755 1.844 3.729 6 C_DC6:DG6_B C 6 ? B 6 ? 19 1 1 B DT 7 1_555 D DA 5 1_555 0.126 -0.147 -0.367 18.138 10.355 -0.088 7 C_DT7:DA5_B C 7 ? B 5 ? 20 1 1 C DG 1 1_555 D DC 4 1_555 0.010 0.080 -0.291 -21.373 -10.632 -6.681 8 D_DG1:DC4_B D 1 ? B 4 ? 19 1 1 C DC 2 1_555 D DG 3 1_555 -0.328 -0.149 0.257 -10.562 -2.388 -2.208 9 D_DC2:DG3_B D 2 ? B 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 D DG 11 1_555 B DA 2 1_555 D DT 10 1_555 0.243 1.160 3.118 -0.426 10.731 30.997 0.184 -0.505 3.322 19.365 0.769 32.762 1 CC_DC1DA2:DT10DG11_BB C 1 ? B 11 ? C 2 ? B 10 ? 1 B DA 2 1_555 D DT 10 1_555 B DG 3 1_555 D DC 9 1_555 0.242 -0.635 3.379 -0.369 4.156 30.334 -2.040 -0.533 3.262 7.896 0.700 30.613 2 CC_DA2DG3:DC9DT10_BB C 2 ? B 10 ? C 3 ? B 9 ? 1 B DG 3 1_555 D DC 9 1_555 B DT 4 1_555 D DA 8 1_555 1.171 -0.589 3.130 4.896 4.131 32.358 -1.721 -1.253 3.171 7.323 -8.679 32.969 3 CC_DG3DT4:DA8DC9_BB C 3 ? B 9 ? C 4 ? B 8 ? 1 B DT 4 1_555 D DA 8 1_555 B DA 5 1_555 D DT 7 1_555 0.756 -0.684 3.660 4.389 8.165 36.097 -2.276 -0.535 3.493 12.916 -6.944 37.230 4 CC_DT4DA5:DT7DA8_BB C 4 ? B 8 ? C 5 ? B 7 ? 1 B DA 5 1_555 D DT 7 1_555 B DC 6 1_555 D DG 6 1_555 0.021 -0.744 3.305 -4.086 8.831 29.452 -3.062 -0.811 2.936 16.803 7.775 30.984 5 CC_DA5DC6:DG6DT7_BB C 5 ? B 7 ? C 6 ? B 6 ? 1 B DC 6 1_555 D DG 6 1_555 B DT 7 1_555 D DA 5 1_555 -0.569 -0.615 2.919 5.062 5.134 22.810 -2.913 2.781 2.538 12.584 -12.407 23.908 6 CC_DC6DT7:DA5DG6_BB C 6 ? B 6 ? C 7 ? B 5 ? 1 C DG 1 1_555 D DC 4 1_555 C DC 2 1_555 D DG 3 1_555 0.076 -0.343 3.073 0.399 6.945 26.291 -2.349 -0.068 2.890 14.938 -0.858 27.180 7 DD_DG1DC2:DG3DC4_BB D 1 ? B 4 ? D 2 ? B 3 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01GM100021-02 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'SODIUM ION' NA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BPY _pdbx_initial_refinement_model.details ? #