data_4PMI # _entry.id 4PMI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4PMI pdb_00004pmi 10.2210/pdb4pmi/pdb WWPDB D_1000201586 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4PMI _pdbx_database_status.recvd_initial_deposition_date 2014-05-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jayaraman, B.' 1 'Crosby, D.C.' 2 'Homer, C.' 3 'Ribeiro, I.' 4 'Mavor, D.' 5 'Frankel, A.D.' 6 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first e04120 _citation.page_last e04120 _citation.title 'RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complex.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.04120 _citation.pdbx_database_id_PubMed 25486594 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jayaraman, B.' 1 ? primary 'Crosby, D.C.' 2 ? primary 'Homer, C.' 3 ? primary 'Ribeiro, I.' 4 ? primary 'Mavor, D.' 5 ? primary 'Frankel, A.D.' 6 ? # _cell.length_a 165.300 _cell.length_b 165.300 _cell.length_c 165.300 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4PMI _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Rev-Response-Element RNA' 12939.696 1 ? ? ? ? 2 polymer man 'Protein Rev' 8380.420 2 ? 'L12S, L60R, E47A, truncated at residue 70' ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'ART/TRS,Anti-repression transactivator,Regulator of expression of viral proteins' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGAGUAUAUGGGCGCACUUCGGUGACGGUACAGGCUCCU GGGAGUAUAUGGGCGCACUUCGGUGACGGUACAGGCUCCU A ? 2 'polypeptide(L)' no no GAMAGRSGDSDEDSLKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRARQRQIHSISERIRSTYLGRSAEP GAMAGRSGDSDEDSLKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRARQRQIHSISERIRSTYLGRSAEP B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 G n 1 12 G n 1 13 G n 1 14 C n 1 15 G n 1 16 C n 1 17 A n 1 18 C n 1 19 U n 1 20 U n 1 21 C n 1 22 G n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 C n 1 28 G n 1 29 G n 1 30 U n 1 31 A n 1 32 C n 1 33 A n 1 34 G n 1 35 G n 1 36 C n 1 37 U n 1 38 C n 1 39 C n 1 40 U n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 ALA n 2 5 GLY n 2 6 ARG n 2 7 SER n 2 8 GLY n 2 9 ASP n 2 10 SER n 2 11 ASP n 2 12 GLU n 2 13 ASP n 2 14 SER n 2 15 LEU n 2 16 LYS n 2 17 ALA n 2 18 VAL n 2 19 ARG n 2 20 LEU n 2 21 ILE n 2 22 LYS n 2 23 PHE n 2 24 LEU n 2 25 TYR n 2 26 GLN n 2 27 SER n 2 28 ASN n 2 29 PRO n 2 30 PRO n 2 31 PRO n 2 32 ASN n 2 33 PRO n 2 34 GLU n 2 35 GLY n 2 36 THR n 2 37 ARG n 2 38 GLN n 2 39 ALA n 2 40 ARG n 2 41 ARG n 2 42 ASN n 2 43 ARG n 2 44 ARG n 2 45 ARG n 2 46 ARG n 2 47 TRP n 2 48 ARG n 2 49 ALA n 2 50 ARG n 2 51 GLN n 2 52 ARG n 2 53 GLN n 2 54 ILE n 2 55 HIS n 2 56 SER n 2 57 ILE n 2 58 SER n 2 59 GLU n 2 60 ARG n 2 61 ILE n 2 62 ARG n 2 63 SER n 2 64 THR n 2 65 TYR n 2 66 LEU n 2 67 GLY n 2 68 ARG n 2 69 SER n 2 70 ALA n 2 71 GLU n 2 72 PRO n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 72 _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene rev _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'isolate HXB3' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 1 group M subtype B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11707 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 40 _pdbx_entity_src_syn.organism_scientific 'Human immunodeficiency virus 1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11676 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 4PMI 4PMI 1 ? 1 ? 2 UNP REV_HV1H3 P69718 2 MAGRSGDSDEDLLKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEP 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4PMI A 1 ? 40 ? 4PMI 36 ? 82 ? 36 82 2 2 4PMI B 3 ? 72 ? P69718 1 ? 70 ? 1 70 3 2 4PMI C 3 ? 72 ? P69718 1 ? 70 ? 1 70 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 4PMI GLY B 1 ? UNP P69718 ? ? 'expression tag' -1 1 2 4PMI ALA B 2 ? UNP P69718 ? ? 'expression tag' 0 2 2 4PMI SER B 14 ? UNP P69718 LEU 12 'engineered mutation' 12 3 2 4PMI ALA B 49 ? UNP P69718 GLU 47 'engineered mutation' 47 4 2 4PMI ARG B 62 ? UNP P69718 LEU 60 'engineered mutation' 60 5 3 4PMI GLY C 1 ? UNP P69718 ? ? 'expression tag' -1 6 3 4PMI ALA C 2 ? UNP P69718 ? ? 'expression tag' 0 7 3 4PMI SER C 14 ? UNP P69718 LEU 12 'engineered mutation' 12 8 3 4PMI ALA C 49 ? UNP P69718 GLU 47 'engineered mutation' 47 9 3 4PMI ARG C 62 ? UNP P69718 LEU 60 'engineered mutation' 60 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4PMI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 6.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 80.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50 mM MES pH 6.0, 50 mM KCl, 1-4% PEG 4000,' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-11-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.115869 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.115869 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 91.889 _reflns.entry_id 4PMI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.200 _reflns.d_resolution_low 45.85 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13246 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.999 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.9 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.470 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.978 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.117 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 343444 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 3.200 3.31 ? 1.74 ? 14120 1789 ? 1751 98.36 ? ? 0.378 ? ? ? ? ? ? ? ? ? ? 15.9 ? ? ? ? 2.089 ? 0 1 1 ? ? 3.280 3.370 ? 1.590 ? 17956 1771 ? 1770 99.900 ? ? 0.557 ? 2.014 ? ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 0 2 1 ? ? 3.370 3.470 ? 2.590 ? 19624 1695 ? 1694 99.900 ? ? 0.839 ? 1.478 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? 0 3 1 ? ? 3.470 3.580 ? 3.140 ? 19194 1648 ? 1648 100.000 ? ? 0.854 ? 1.288 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 0 4 1 ? ? 3.580 3.700 ? 4.390 ? 18205 1570 ? 1569 99.900 ? ? 0.919 ? 0.943 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.987 ? 0 5 1 ? ? 3.700 3.820 ? 5.250 ? 18324 1576 ? 1576 100.000 ? ? 0.945 ? 0.755 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.790 ? 0 6 1 ? ? 3.820 3.970 ? 6.550 ? 17199 1487 ? 1484 99.800 ? ? 0.949 ? 0.642 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.672 ? 0 7 1 ? ? 3.970 4.130 ? 8.630 ? 16534 1413 ? 1413 100.000 ? ? 0.980 ? 0.435 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.455 ? 0 8 1 ? ? 4.130 4.320 ? 10.010 ? 16012 1372 ? 1372 100.000 ? ? 0.985 ? 0.368 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.385 ? 0 9 1 ? ? 4.320 4.530 ? 14.650 ? 15334 1317 ? 1317 100.000 ? ? 0.993 ? 0.220 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.230 ? 0 10 1 ? ? 4.530 4.770 ? 18.550 ? 14800 1269 ? 1269 100.000 ? ? 0.995 ? 0.169 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.177 ? 0 11 1 ? ? 4.770 5.060 ? 21.000 ? 14193 1155 ? 1155 100.000 ? ? 0.996 ? 0.149 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.156 ? 0 12 1 ? ? 5.060 5.410 ? 24.040 ? 25897 1122 ? 1122 100.000 ? ? 0.997 ? 0.215 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.220 ? 0 13 1 ? ? 5.410 5.840 ? 24.300 ? 24212 1036 ? 1036 100.000 ? ? 0.997 ? 0.197 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.201 ? 0 14 1 ? ? 5.840 6.400 ? 30.650 ? 22268 950 ? 950 100.000 ? ? 0.998 ? 0.145 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.148 ? 0 15 1 ? ? 6.400 7.160 ? 36.590 ? 20060 860 ? 860 100.000 ? ? 0.999 ? 0.110 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.112 ? 0 16 1 ? ? 7.160 8.260 ? 53.260 ? 17626 761 ? 761 100.000 ? ? 0.999 ? 0.068 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.069 ? 0 17 1 ? ? 8.260 10.120 ? 62.900 ? 14478 641 ? 641 100.000 ? ? 0.999 ? 0.052 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.053 ? 0 18 1 ? ? 10.120 14.310 ? 72.580 ? 11552 499 ? 499 100.000 ? ? 0.999 ? 0.043 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.044 ? 0 19 1 ? ? 14.310 45.85 ? 78.140 ? 5985 276 ? 268 97.100 ? ? 0.999 ? 0.038 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.039 ? 0 20 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 227.850 _refine.B_iso_mean 114.7100 _refine.B_iso_min 65.520 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4PMI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.2000 _refine.ls_d_res_low 45.8460 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13242 _refine.ls_number_reflns_R_free 1325 _refine.ls_number_reflns_R_work 11917 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6900 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1946 _refine.ls_R_factor_R_free 0.2110 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1928 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.990 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model '3lph, 1etf' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.9800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8468 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.2000 _refine_hist.d_res_low 45.8460 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 1717 _refine_hist.pdbx_number_residues_total 145 _refine_hist.pdbx_B_iso_mean_ligand 153.79 _refine_hist.pdbx_B_iso_mean_solvent 112.73 _refine_hist.pdbx_number_atoms_protein 862 _refine_hist.pdbx_number_atoms_nucleic_acid 849 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 1832 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.394 ? 2668 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.020 ? 321 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 198 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.911 ? 828 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 3.2002 3.3283 1409 . 141 1268 98.0000 . . . 0.3014 . 0.2788 . . . . . . 9 . 'X-RAY DIFFRACTION' 3.3283 3.4797 1440 . 144 1296 100.0000 . . . 0.2977 . 0.2493 . . . . . . 9 . 'X-RAY DIFFRACTION' 3.4797 3.6631 1430 . 143 1287 100.0000 . . . 0.2283 . 0.2139 . . . . . . 9 . 'X-RAY DIFFRACTION' 3.6631 3.8925 1443 . 145 1298 100.0000 . . . 0.2244 . 0.2239 . . . . . . 9 . 'X-RAY DIFFRACTION' 3.8925 4.1929 1442 . 143 1299 100.0000 . . . 0.2424 . 0.2064 . . . . . . 9 . 'X-RAY DIFFRACTION' 4.1929 4.6145 1474 . 148 1326 100.0000 . . . 0.1887 . 0.1744 . . . . . . 9 . 'X-RAY DIFFRACTION' 4.6145 5.2814 1475 . 148 1327 100.0000 . . . 0.1754 . 0.1723 . . . . . . 9 . 'X-RAY DIFFRACTION' 5.2814 6.6507 1509 . 150 1359 100.0000 . . . 0.2243 . 0.2027 . . . . . . 9 . 'X-RAY DIFFRACTION' 6.6507 45.8507 1620 . 163 1457 100.0000 . . . 0.1873 . 0.1670 . . . . . . 9 . # _struct.entry_id 4PMI _struct.title 'Crystal structure of Rev and Rev-response-element RNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4PMI _struct_keywords.text 'protein-RNA complex, helix-loop-helix, HIV, nuclear export, RNA binding protein-RNA complex' _struct_keywords.pdbx_keywords 'RNA binding protein/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP B 13 ? SER B 27 ? ASP B 11 SER B 25 1 ? 15 HELX_P HELX_P2 AA2 THR B 36 ? THR B 64 ? THR B 34 THR B 62 1 ? 29 HELX_P HELX_P3 AA3 LYS C 16 ? SER C 27 ? LYS C 14 SER C 25 1 ? 12 HELX_P HELX_P4 AA4 THR C 36 ? THR C 64 ? THR C 34 THR C 62 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A G 1 P ? ? ? 1_555 D PO4 . O3 ? ? A G 36 A PO4 101 1_555 ? ? ? ? ? ? ? 1.614 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 40 O2 ? ? A G 36 A U 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A U 40 N3 ? ? A G 36 A U 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 37 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 37 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 37 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 38 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 38 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 38 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 39 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 39 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 40 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 40 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 40 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 35 O6 ? ? A U 41 A G 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 35 N1 ? ? A U 41 A G 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 34 N1 ? ? A A 44 A G 76 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 34 O6 ? ? A A 44 A G 76 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 45 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 45 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 46 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 46 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 46 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A A 31 N1 ? ? A G 47 A A 73 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 29 O6 ? ? A G 48 A G 71 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 29 N1 ? ? A G 48 A G 71 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog26 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 49 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 49 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 49 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 50 A C 69 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog30 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 52 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 52 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 53 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 53 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 53 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 19 O2 ? ? ? 1_555 A G 22 N1 ? ? A U 54 A G 57 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PO4 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'binding site for residue PO4 A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 1 ? G A 36 . ? 1_555 ? 2 AC1 2 ARG C 41 ? ARG C 39 . ? 1_555 ? # _atom_sites.entry_id 4PMI _atom_sites.fract_transf_matrix[1][1] 0.006050 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006050 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006050 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 36 36 G G A . n A 1 2 G 2 37 37 G G A . n A 1 3 G 3 38 38 G G A . n A 1 4 A 4 39 39 A A A . n A 1 5 G 5 40 40 G G A . n A 1 6 U 6 41 41 U U A . n A 1 7 A 7 42 42 A A A . n A 1 8 U 8 43 43 U U A . n A 1 9 A 9 44 44 A A A . n A 1 10 U 10 45 45 U U A . n A 1 11 G 11 46 46 G G A . n A 1 12 G 12 47 47 G G A . n A 1 13 G 13 48 48 G G A . n A 1 14 C 14 49 49 C C A . n A 1 15 G 15 50 50 G G A . n A 1 16 C 16 51 51 C C A . n A 1 17 A 17 52 52 A A A . n A 1 18 C 18 53 53 C C A . n A 1 19 U 19 54 54 U U A . n A 1 20 U 20 55 55 U U A . n A 1 21 C 21 56 56 C C A . n A 1 22 G 22 57 57 G G A . n A 1 23 G 23 58 58 G G A . n A 1 24 U 24 66 66 U U A . n A 1 25 G 25 67 67 G G A . n A 1 26 A 26 68 68 A A A . n A 1 27 C 27 69 69 C C A . n A 1 28 G 28 70 70 G G A . n A 1 29 G 29 71 71 G G A . n A 1 30 U 30 72 72 U U A . n A 1 31 A 31 73 73 A A A . n A 1 32 C 32 74 74 C C A . n A 1 33 A 33 75 75 A A A . n A 1 34 G 34 76 76 G G A . n A 1 35 G 35 77 77 G G A . n A 1 36 C 36 78 78 C C A . n A 1 37 U 37 79 79 U U A . n A 1 38 C 38 80 80 C C A . n A 1 39 C 39 81 81 C C A . n A 1 40 U 40 82 82 U U A . n B 2 1 GLY 1 -1 ? ? ? B . n B 2 2 ALA 2 0 ? ? ? B . n B 2 3 MET 3 1 ? ? ? B . n B 2 4 ALA 4 2 ? ? ? B . n B 2 5 GLY 5 3 ? ? ? B . n B 2 6 ARG 6 4 ? ? ? B . n B 2 7 SER 7 5 ? ? ? B . n B 2 8 GLY 8 6 ? ? ? B . n B 2 9 ASP 9 7 ? ? ? B . n B 2 10 SER 10 8 ? ? ? B . n B 2 11 ASP 11 9 ? ? ? B . n B 2 12 GLU 12 10 ? ? ? B . n B 2 13 ASP 13 11 11 ASP ASP B . n B 2 14 SER 14 12 12 SER SER B . n B 2 15 LEU 15 13 13 LEU LEU B . n B 2 16 LYS 16 14 14 LYS LYS B . n B 2 17 ALA 17 15 15 ALA ALA B . n B 2 18 VAL 18 16 16 VAL VAL B . n B 2 19 ARG 19 17 17 ARG ARG B . n B 2 20 LEU 20 18 18 LEU LEU B . n B 2 21 ILE 21 19 19 ILE ILE B . n B 2 22 LYS 22 20 20 LYS LYS B . n B 2 23 PHE 23 21 21 PHE PHE B . n B 2 24 LEU 24 22 22 LEU LEU B . n B 2 25 TYR 25 23 23 TYR TYR B . n B 2 26 GLN 26 24 24 GLN GLN B . n B 2 27 SER 27 25 25 SER SER B . n B 2 28 ASN 28 26 26 ASN ASN B . n B 2 29 PRO 29 27 27 PRO PRO B . n B 2 30 PRO 30 28 28 PRO PRO B . n B 2 31 PRO 31 29 29 PRO PRO B . n B 2 32 ASN 32 30 30 ASN ASN B . n B 2 33 PRO 33 31 31 PRO PRO B . n B 2 34 GLU 34 32 32 GLU GLU B . n B 2 35 GLY 35 33 33 GLY GLY B . n B 2 36 THR 36 34 34 THR THR B . n B 2 37 ARG 37 35 35 ARG ARG B . n B 2 38 GLN 38 36 36 GLN GLN B . n B 2 39 ALA 39 37 37 ALA ALA B . n B 2 40 ARG 40 38 38 ARG ARG B . n B 2 41 ARG 41 39 39 ARG ARG B . n B 2 42 ASN 42 40 40 ASN ASN B . n B 2 43 ARG 43 41 41 ARG ARG B . n B 2 44 ARG 44 42 42 ARG ARG B . n B 2 45 ARG 45 43 43 ARG ARG B . n B 2 46 ARG 46 44 44 ARG ARG B . n B 2 47 TRP 47 45 45 TRP TRP B . n B 2 48 ARG 48 46 46 ARG ARG B . n B 2 49 ALA 49 47 47 ALA ALA B . n B 2 50 ARG 50 48 48 ARG ARG B . n B 2 51 GLN 51 49 49 GLN GLN B . n B 2 52 ARG 52 50 50 ARG ARG B . n B 2 53 GLN 53 51 51 GLN GLN B . n B 2 54 ILE 54 52 52 ILE ILE B . n B 2 55 HIS 55 53 53 HIS HIS B . n B 2 56 SER 56 54 54 SER SER B . n B 2 57 ILE 57 55 55 ILE ILE B . n B 2 58 SER 58 56 56 SER SER B . n B 2 59 GLU 59 57 57 GLU GLU B . n B 2 60 ARG 60 58 58 ARG ARG B . n B 2 61 ILE 61 59 59 ILE ILE B . n B 2 62 ARG 62 60 60 ARG ARG B . n B 2 63 SER 63 61 61 SER SER B . n B 2 64 THR 64 62 62 THR THR B . n B 2 65 TYR 65 63 63 TYR TYR B . n B 2 66 LEU 66 64 ? ? ? B . n B 2 67 GLY 67 65 ? ? ? B . n B 2 68 ARG 68 66 ? ? ? B . n B 2 69 SER 69 67 ? ? ? B . n B 2 70 ALA 70 68 ? ? ? B . n B 2 71 GLU 71 69 ? ? ? B . n B 2 72 PRO 72 70 ? ? ? B . n C 2 1 GLY 1 -1 ? ? ? C . n C 2 2 ALA 2 0 ? ? ? C . n C 2 3 MET 3 1 ? ? ? C . n C 2 4 ALA 4 2 ? ? ? C . n C 2 5 GLY 5 3 ? ? ? C . n C 2 6 ARG 6 4 ? ? ? C . n C 2 7 SER 7 5 ? ? ? C . n C 2 8 GLY 8 6 ? ? ? C . n C 2 9 ASP 9 7 ? ? ? C . n C 2 10 SER 10 8 ? ? ? C . n C 2 11 ASP 11 9 ? ? ? C . n C 2 12 GLU 12 10 ? ? ? C . n C 2 13 ASP 13 11 ? ? ? C . n C 2 14 SER 14 12 ? ? ? C . n C 2 15 LEU 15 13 13 LEU LEU C . n C 2 16 LYS 16 14 14 LYS LYS C . n C 2 17 ALA 17 15 15 ALA ALA C . n C 2 18 VAL 18 16 16 VAL VAL C . n C 2 19 ARG 19 17 17 ARG ARG C . n C 2 20 LEU 20 18 18 LEU LEU C . n C 2 21 ILE 21 19 19 ILE ILE C . n C 2 22 LYS 22 20 20 LYS LYS C . n C 2 23 PHE 23 21 21 PHE PHE C . n C 2 24 LEU 24 22 22 LEU LEU C . n C 2 25 TYR 25 23 23 TYR TYR C . n C 2 26 GLN 26 24 24 GLN GLN C . n C 2 27 SER 27 25 25 SER SER C . n C 2 28 ASN 28 26 26 ASN ASN C . n C 2 29 PRO 29 27 27 PRO PRO C . n C 2 30 PRO 30 28 28 PRO PRO C . n C 2 31 PRO 31 29 29 PRO PRO C . n C 2 32 ASN 32 30 30 ASN ASN C . n C 2 33 PRO 33 31 31 PRO PRO C . n C 2 34 GLU 34 32 32 GLU GLU C . n C 2 35 GLY 35 33 33 GLY GLY C . n C 2 36 THR 36 34 34 THR THR C . n C 2 37 ARG 37 35 35 ARG ARG C . n C 2 38 GLN 38 36 36 GLN GLN C . n C 2 39 ALA 39 37 37 ALA ALA C . n C 2 40 ARG 40 38 38 ARG ARG C . n C 2 41 ARG 41 39 39 ARG ARG C . n C 2 42 ASN 42 40 40 ASN ASN C . n C 2 43 ARG 43 41 41 ARG ARG C . n C 2 44 ARG 44 42 42 ARG ARG C . n C 2 45 ARG 45 43 43 ARG ARG C . n C 2 46 ARG 46 44 44 ARG ARG C . n C 2 47 TRP 47 45 45 TRP TRP C . n C 2 48 ARG 48 46 46 ARG ARG C . n C 2 49 ALA 49 47 47 ALA ALA C . n C 2 50 ARG 50 48 48 ARG ARG C . n C 2 51 GLN 51 49 49 GLN GLN C . n C 2 52 ARG 52 50 50 ARG ARG C . n C 2 53 GLN 53 51 51 GLN GLN C . n C 2 54 ILE 54 52 52 ILE ILE C . n C 2 55 HIS 55 53 53 HIS HIS C . n C 2 56 SER 56 54 54 SER SER C . n C 2 57 ILE 57 55 55 ILE ILE C . n C 2 58 SER 58 56 56 SER SER C . n C 2 59 GLU 59 57 57 GLU GLU C . n C 2 60 ARG 60 58 58 ARG ARG C . n C 2 61 ILE 61 59 59 ILE ILE C . n C 2 62 ARG 62 60 60 ARG ARG C . n C 2 63 SER 63 61 61 SER SER C . n C 2 64 THR 64 62 62 THR THR C . n C 2 65 TYR 65 63 63 TYR TYR C . n C 2 66 LEU 66 64 64 LEU LEU C . n C 2 67 GLY 67 65 ? ? ? C . n C 2 68 ARG 68 66 ? ? ? C . n C 2 69 SER 69 67 ? ? ? C . n C 2 70 ALA 70 68 ? ? ? C . n C 2 71 GLU 71 69 ? ? ? C . n C 2 72 PRO 72 70 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PO4 1 101 1 PO4 PO4 A . E 4 HOH 1 201 1 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA nonameric 9 2 software_defined_assembly PISA octadecameric 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,B,C,D,E 2 1,2,3,4,5,6 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16980 ? 1 MORE -141 ? 1 'SSA (A^2)' 32400 ? 2 'ABSA (A^2)' 37720 ? 2 MORE -329 ? 2 'SSA (A^2)' 61030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0.0000000000 0.0000000000 1.0000000000 -82.6500000000 -1.0000000000 0.0000000000 0.0000000000 -82.6500000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0.0000000000 -1.0000000000 0.0000000000 -82.6500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 82.6500000000 4 'crystal symmetry operation' 13_455 y-1/4,x+1/4,-z+1/4 0.0000000000 1.0000000000 0.0000000000 -41.3250000000 1.0000000000 0.0000000000 0.0000000000 41.3250000000 0.0000000000 0.0000000000 -1.0000000000 41.3250000000 5 'crystal symmetry operation' 18_445 -x-3/4,z-1/4,y+1/4 -1.0000000000 0.0000000000 0.0000000000 -123.9750000000 0.0000000000 0.0000000000 1.0000000000 -41.3250000000 0.0000000000 1.0000000000 0.0000000000 41.3250000000 6 'crystal symmetry operation' 24_444 -z-1/4,-y-1/4,-x-1/4 0.0000000000 0.0000000000 -1.0000000000 -41.3250000000 0.0000000000 -1.0000000000 0.0000000000 -41.3250000000 -1.0000000000 0.0000000000 0.0000000000 -41.3250000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-24 2 'Structure model' 1 1 2015-01-21 3 'Structure model' 1 2 2015-03-04 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-02-13 6 'Structure model' 1 5 2019-12-25 7 'Structure model' 1 6 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' 7 4 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Source and taxonomy' 10 6 'Structure model' 'Author supporting evidence' 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Database references' 13 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_entity_src_syn 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_assembly_gen 7 4 'Structure model' pdbx_struct_assembly_prop 8 4 'Structure model' pdbx_struct_oper_list 9 4 'Structure model' software 10 5 'Structure model' entity_src_gen 11 6 'Structure model' pdbx_audit_support 12 7 'Structure model' chem_comp_atom 13 7 'Structure model' chem_comp_bond 14 7 'Structure model' database_2 15 7 'Structure model' pdbx_initial_refinement_model 16 7 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 4 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 6 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 7 4 'Structure model' '_pdbx_struct_assembly_prop.type' 8 4 'Structure model' '_pdbx_struct_assembly_prop.value' 9 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 5 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 11 6 'Structure model' '_pdbx_audit_support.funding_organization' 12 7 'Structure model' '_database_2.pdbx_DOI' 13 7 'Structure model' '_database_2.pdbx_database_accession' 14 7 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 15 7 'Structure model' '_refine_hist.pdbx_number_atoms_protein' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 5.550 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 13162 _diffrn_reflns.pdbx_Rmerge_I_obs 0.146 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.33 _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 200271 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 24.83 45.85 131 ? 0.032 ? ? ? ? 1 17.56 24.83 275 ? 0.045 ? ? ? ? 1 14.34 17.56 348 ? 0.060 ? ? ? ? 1 12.42 14.34 409 ? 0.069 ? ? ? ? 1 11.11 12.42 483 ? 0.077 ? ? ? ? 1 10.14 11.11 517 ? 0.084 ? ? ? ? 1 9.39 10.14 561 ? 0.101 ? ? ? ? 1 8.78 9.39 610 ? 0.112 ? ? ? ? 1 8.28 8.78 644 ? 0.164 ? ? ? ? 1 7.85 8.28 681 ? 0.165 ? ? ? ? 1 7.49 7.85 719 ? 0.249 ? ? ? ? 1 7.17 7.49 759 ? 0.321 ? ? ? ? 1 6.89 7.17 769 ? 0.401 ? ? ? ? 1 6.64 6.89 817 ? 0.521 ? ? ? ? 1 6.41 6.64 838 ? 0.647 ? ? ? ? 1 6.21 6.41 875 ? 0.793 ? ? ? ? 1 6.02 6.21 908 ? 1.106 ? ? ? ? 1 5.85 6.02 933 ? 1.184 ? ? ? ? 1 5.70 5.85 952 ? 1.411 ? ? ? ? 1 5.55 5.70 933 ? 1.462 ? ? ? ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -36.6385 -21.1849 16.8382 0.8587 ? -0.1781 ? 0.0238 ? 1.3614 ? -0.3064 ? 0.7596 ? 5.9628 ? 0.6640 ? -4.7364 ? 2.9521 ? -0.5357 ? 5.0549 ? 0.5162 ? 0.2333 ? 0.0002 ? 0.7798 ? 0.2765 ? -0.9213 ? -0.6859 ? 0.8554 ? -0.8166 ? 2 'X-RAY DIFFRACTION' ? refined -13.0085 -34.6927 8.5952 0.8460 ? 0.1401 ? 0.1544 ? 1.6506 ? -0.5743 ? 1.9737 ? 8.6077 ? -1.0455 ? -6.4085 ? 6.6123 ? 2.4520 ? 4.9332 ? -0.2770 ? -1.4189 ? -0.3089 ? 0.4247 ? 0.4376 ? -0.5536 ? -0.4295 ? 0.0826 ? -0.1077 ? 3 'X-RAY DIFFRACTION' ? refined -36.0927 -21.0449 20.3169 0.7904 ? 0.0463 ? -0.0524 ? 1.2293 ? -0.2502 ? 0.6216 ? 7.1021 ? -4.6974 ? -3.1772 ? 8.1060 ? 1.7373 ? 1.4537 ? 0.0840 ? -0.2906 ? 0.5187 ? 0.2731 ? 0.5792 ? -1.2890 ? -0.3141 ? 0.5393 ? -0.6119 ? 4 'X-RAY DIFFRACTION' ? refined -46.1605 -38.4943 -6.2728 0.6473 ? 0.2545 ? -0.1776 ? 1.5830 ? -0.5636 ? 1.2053 ? 4.8165 ? -0.2113 ? 2.9096 ? 0.8087 ? -1.8787 ? 5.9016 ? 0.9456 ? 1.4056 ? -0.2351 ? -0.1400 ? -0.2332 ? 0.2273 ? -0.4873 ? -1.0491 ? -0.8083 ? 5 'X-RAY DIFFRACTION' ? refined -29.2858 -24.9921 -0.2573 1.0398 ? -0.4529 ? 0.4726 ? 1.7411 ? -0.1977 ? 1.6660 ? 9.7918 ? 8.0462 ? 5.0638 ? 7.4950 ? 3.3126 ? 3.9170 ? -0.4821 ? 2.8323 ? 3.8022 ? -1.5642 ? 2.0005 ? 0.5594 ? -1.0796 ? 3.1964 ? -1.0726 ? 6 'X-RAY DIFFRACTION' ? refined -34.8980 -36.2987 4.1596 0.6619 ? 0.0612 ? 0.2556 ? 1.2575 ? -0.4537 ? 1.2163 ? 2.3974 ? -3.3708 ? 0.7971 ? 5.6605 ? 1.3134 ? 5.6070 ? -0.1181 ? 0.5987 ? -1.2353 ? 0.1599 ? 0.3482 ? 0.5305 ? 0.1636 ? 0.8768 ? -0.2840 ? 7 'X-RAY DIFFRACTION' ? refined -50.6644 -40.6474 8.8384 0.6639 ? -0.1725 ? 0.2757 ? 1.3358 ? -0.2364 ? 1.3699 ? 9.9372 ? 1.8573 ? -0.5626 ? 4.5668 ? -3.3708 ? 7.3562 ? -0.1487 ? 1.0583 ? -1.5694 ? -0.1866 ? 0.9783 ? 0.6564 ? 0.8054 ? -0.4270 ? -0.8914 ? 8 'X-RAY DIFFRACTION' ? refined -38.2656 -34.4237 25.4474 0.8629 ? 0.0765 ? -0.0727 ? 1.3431 ? 0.0147 ? 0.8018 ? 4.9131 ? 1.3067 ? -0.2282 ? 3.8483 ? -2.6603 ? 1.9234 ? 0.0570 ? -2.4735 ? -2.1430 ? -0.3799 ? -1.2082 ? -0.2664 ? -0.3807 ? 0.4003 ? 0.5391 ? 9 'X-RAY DIFFRACTION' ? refined -44.3764 -29.5064 13.6319 0.5351 ? 0.0698 ? 0.2291 ? 0.9684 ? -0.0422 ? 1.0017 ? 9.6977 ? -0.3396 ? 7.7243 ? 4.6520 ? 2.1311 ? 10.0776 ? -0.2050 ? -0.5089 ? 0.1504 ? 0.0782 ? -0.0249 ? 0.3058 ? -0.3739 ? -0.3481 ? 0.1616 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 36 through 48 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 49 through 70 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 71 through 82 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? B 0 ? ? B 0 ? ;chain 'B' and (resid 11 through 24 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? B 0 ? ? B 0 ? ;chain 'B' and (resid 25 through 34 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? B 0 ? ? B 0 ? ;chain 'B' and (resid 35 through 63 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 13 through 25 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 26 through 34 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 35 through 64 ) ; # loop_ _phasing.method SAD MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.14 5 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 7 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 8 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 36 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O3 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PO4 _pdbx_validate_close_contact.auth_seq_id_2 101 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR C 62 ? ? -103.89 -156.95 2 1 TYR C 63 ? ? 63.56 -6.97 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A A 68 ? N9 ? A A 26 N9 2 1 Y 1 A A 68 ? C8 ? A A 26 C8 3 1 Y 1 A A 68 ? N7 ? A A 26 N7 4 1 Y 1 A A 68 ? C5 ? A A 26 C5 5 1 Y 1 A A 68 ? C6 ? A A 26 C6 6 1 Y 1 A A 68 ? N6 ? A A 26 N6 7 1 Y 1 A A 68 ? N1 ? A A 26 N1 8 1 Y 1 A A 68 ? C2 ? A A 26 C2 9 1 Y 1 A A 68 ? N3 ? A A 26 N3 10 1 Y 1 A A 68 ? C4 ? A A 26 C4 11 1 Y 1 B LEU 13 ? CG ? B LEU 15 CG 12 1 Y 1 B LEU 13 ? CD1 ? B LEU 15 CD1 13 1 Y 1 B LEU 13 ? CD2 ? B LEU 15 CD2 14 1 Y 1 B LYS 14 ? CD ? B LYS 16 CD 15 1 Y 1 B LYS 14 ? CE ? B LYS 16 CE 16 1 Y 1 B LYS 14 ? NZ ? B LYS 16 NZ 17 1 Y 1 B ARG 17 ? NE ? B ARG 19 NE 18 1 Y 1 B ARG 17 ? CZ ? B ARG 19 CZ 19 1 Y 1 B ARG 17 ? NH1 ? B ARG 19 NH1 20 1 Y 1 B ARG 17 ? NH2 ? B ARG 19 NH2 21 1 Y 1 B LYS 20 ? CD ? B LYS 22 CD 22 1 Y 1 B LYS 20 ? CE ? B LYS 22 CE 23 1 Y 1 B LYS 20 ? NZ ? B LYS 22 NZ 24 1 Y 1 B GLN 24 ? CG ? B GLN 26 CG 25 1 Y 1 B GLN 24 ? CD ? B GLN 26 CD 26 1 Y 1 B GLN 24 ? OE1 ? B GLN 26 OE1 27 1 Y 1 B GLN 24 ? NE2 ? B GLN 26 NE2 28 1 Y 1 B ARG 42 ? CG ? B ARG 44 CG 29 1 Y 1 B ARG 42 ? CD ? B ARG 44 CD 30 1 Y 1 B ARG 42 ? NE ? B ARG 44 NE 31 1 Y 1 B ARG 42 ? CZ ? B ARG 44 CZ 32 1 Y 1 B ARG 42 ? NH1 ? B ARG 44 NH1 33 1 Y 1 B ARG 42 ? NH2 ? B ARG 44 NH2 34 1 Y 1 B ARG 46 ? CG ? B ARG 48 CG 35 1 Y 1 B ARG 46 ? CD ? B ARG 48 CD 36 1 Y 1 B ARG 46 ? NE ? B ARG 48 NE 37 1 Y 1 B ARG 46 ? CZ ? B ARG 48 CZ 38 1 Y 1 B ARG 46 ? NH1 ? B ARG 48 NH1 39 1 Y 1 B ARG 46 ? NH2 ? B ARG 48 NH2 40 1 Y 1 B TYR 63 ? CG ? B TYR 65 CG 41 1 Y 1 B TYR 63 ? CD1 ? B TYR 65 CD1 42 1 Y 1 B TYR 63 ? CD2 ? B TYR 65 CD2 43 1 Y 1 B TYR 63 ? CE1 ? B TYR 65 CE1 44 1 Y 1 B TYR 63 ? CE2 ? B TYR 65 CE2 45 1 Y 1 B TYR 63 ? CZ ? B TYR 65 CZ 46 1 Y 1 B TYR 63 ? OH ? B TYR 65 OH 47 1 Y 1 C LYS 14 ? CD ? C LYS 16 CD 48 1 Y 1 C LYS 14 ? CE ? C LYS 16 CE 49 1 Y 1 C LYS 14 ? NZ ? C LYS 16 NZ 50 1 Y 1 C GLU 32 ? CG ? C GLU 34 CG 51 1 Y 1 C GLU 32 ? CD ? C GLU 34 CD 52 1 Y 1 C GLU 32 ? OE1 ? C GLU 34 OE1 53 1 Y 1 C GLU 32 ? OE2 ? C GLU 34 OE2 54 1 Y 1 C ARG 35 ? CG ? C ARG 37 CG 55 1 Y 1 C ARG 35 ? CD ? C ARG 37 CD 56 1 Y 1 C ARG 35 ? NE ? C ARG 37 NE 57 1 Y 1 C ARG 35 ? CZ ? C ARG 37 CZ 58 1 Y 1 C ARG 35 ? NH1 ? C ARG 37 NH1 59 1 Y 1 C ARG 35 ? NH2 ? C ARG 37 NH2 60 1 Y 1 C LEU 64 ? CG ? C LEU 66 CG 61 1 Y 1 C LEU 64 ? CD1 ? C LEU 66 CD1 62 1 Y 1 C LEU 64 ? CD2 ? C LEU 66 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY -1 ? B GLY 1 2 1 Y 1 B ALA 0 ? B ALA 2 3 1 Y 1 B MET 1 ? B MET 3 4 1 Y 1 B ALA 2 ? B ALA 4 5 1 Y 1 B GLY 3 ? B GLY 5 6 1 Y 1 B ARG 4 ? B ARG 6 7 1 Y 1 B SER 5 ? B SER 7 8 1 Y 1 B GLY 6 ? B GLY 8 9 1 Y 1 B ASP 7 ? B ASP 9 10 1 Y 1 B SER 8 ? B SER 10 11 1 Y 1 B ASP 9 ? B ASP 11 12 1 Y 1 B GLU 10 ? B GLU 12 13 1 Y 1 B LEU 64 ? B LEU 66 14 1 Y 1 B GLY 65 ? B GLY 67 15 1 Y 1 B ARG 66 ? B ARG 68 16 1 Y 1 B SER 67 ? B SER 69 17 1 Y 1 B ALA 68 ? B ALA 70 18 1 Y 1 B GLU 69 ? B GLU 71 19 1 Y 1 B PRO 70 ? B PRO 72 20 1 Y 1 C GLY -1 ? C GLY 1 21 1 Y 1 C ALA 0 ? C ALA 2 22 1 Y 1 C MET 1 ? C MET 3 23 1 Y 1 C ALA 2 ? C ALA 4 24 1 Y 1 C GLY 3 ? C GLY 5 25 1 Y 1 C ARG 4 ? C ARG 6 26 1 Y 1 C SER 5 ? C SER 7 27 1 Y 1 C GLY 6 ? C GLY 8 28 1 Y 1 C ASP 7 ? C ASP 9 29 1 Y 1 C SER 8 ? C SER 10 30 1 Y 1 C ASP 9 ? C ASP 11 31 1 Y 1 C GLU 10 ? C GLU 12 32 1 Y 1 C ASP 11 ? C ASP 13 33 1 Y 1 C SER 12 ? C SER 14 34 1 Y 1 C GLY 65 ? C GLY 67 35 1 Y 1 C ARG 66 ? C ARG 68 36 1 Y 1 C SER 67 ? C SER 69 37 1 Y 1 C ALA 68 ? C ALA 70 38 1 Y 1 C GLU 69 ? C GLU 71 39 1 Y 1 C PRO 70 ? C PRO 72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 HOH O O N N 254 HOH H1 H N N 255 HOH H2 H N N 256 ILE N N N N 257 ILE CA C N S 258 ILE C C N N 259 ILE O O N N 260 ILE CB C N S 261 ILE CG1 C N N 262 ILE CG2 C N N 263 ILE CD1 C N N 264 ILE OXT O N N 265 ILE H H N N 266 ILE H2 H N N 267 ILE HA H N N 268 ILE HB H N N 269 ILE HG12 H N N 270 ILE HG13 H N N 271 ILE HG21 H N N 272 ILE HG22 H N N 273 ILE HG23 H N N 274 ILE HD11 H N N 275 ILE HD12 H N N 276 ILE HD13 H N N 277 ILE HXT H N N 278 LEU N N N N 279 LEU CA C N S 280 LEU C C N N 281 LEU O O N N 282 LEU CB C N N 283 LEU CG C N N 284 LEU CD1 C N N 285 LEU CD2 C N N 286 LEU OXT O N N 287 LEU H H N N 288 LEU H2 H N N 289 LEU HA H N N 290 LEU HB2 H N N 291 LEU HB3 H N N 292 LEU HG H N N 293 LEU HD11 H N N 294 LEU HD12 H N N 295 LEU HD13 H N N 296 LEU HD21 H N N 297 LEU HD22 H N N 298 LEU HD23 H N N 299 LEU HXT H N N 300 LYS N N N N 301 LYS CA C N S 302 LYS C C N N 303 LYS O O N N 304 LYS CB C N N 305 LYS CG C N N 306 LYS CD C N N 307 LYS CE C N N 308 LYS NZ N N N 309 LYS OXT O N N 310 LYS H H N N 311 LYS H2 H N N 312 LYS HA H N N 313 LYS HB2 H N N 314 LYS HB3 H N N 315 LYS HG2 H N N 316 LYS HG3 H N N 317 LYS HD2 H N N 318 LYS HD3 H N N 319 LYS HE2 H N N 320 LYS HE3 H N N 321 LYS HZ1 H N N 322 LYS HZ2 H N N 323 LYS HZ3 H N N 324 LYS HXT H N N 325 MET N N N N 326 MET CA C N S 327 MET C C N N 328 MET O O N N 329 MET CB C N N 330 MET CG C N N 331 MET SD S N N 332 MET CE C N N 333 MET OXT O N N 334 MET H H N N 335 MET H2 H N N 336 MET HA H N N 337 MET HB2 H N N 338 MET HB3 H N N 339 MET HG2 H N N 340 MET HG3 H N N 341 MET HE1 H N N 342 MET HE2 H N N 343 MET HE3 H N N 344 MET HXT H N N 345 PHE N N N N 346 PHE CA C N S 347 PHE C C N N 348 PHE O O N N 349 PHE CB C N N 350 PHE CG C Y N 351 PHE CD1 C Y N 352 PHE CD2 C Y N 353 PHE CE1 C Y N 354 PHE CE2 C Y N 355 PHE CZ C Y N 356 PHE OXT O N N 357 PHE H H N N 358 PHE H2 H N N 359 PHE HA H N N 360 PHE HB2 H N N 361 PHE HB3 H N N 362 PHE HD1 H N N 363 PHE HD2 H N N 364 PHE HE1 H N N 365 PHE HE2 H N N 366 PHE HZ H N N 367 PHE HXT H N N 368 PO4 P P N N 369 PO4 O1 O N N 370 PO4 O2 O N N 371 PO4 O3 O N N 372 PO4 O4 O N N 373 PRO N N N N 374 PRO CA C N S 375 PRO C C N N 376 PRO O O N N 377 PRO CB C N N 378 PRO CG C N N 379 PRO CD C N N 380 PRO OXT O N N 381 PRO H H N N 382 PRO HA H N N 383 PRO HB2 H N N 384 PRO HB3 H N N 385 PRO HG2 H N N 386 PRO HG3 H N N 387 PRO HD2 H N N 388 PRO HD3 H N N 389 PRO HXT H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 U OP3 O N N 473 U P P N N 474 U OP1 O N N 475 U OP2 O N N 476 U "O5'" O N N 477 U "C5'" C N N 478 U "C4'" C N R 479 U "O4'" O N N 480 U "C3'" C N S 481 U "O3'" O N N 482 U "C2'" C N R 483 U "O2'" O N N 484 U "C1'" C N R 485 U N1 N N N 486 U C2 C N N 487 U O2 O N N 488 U N3 N N N 489 U C4 C N N 490 U O4 O N N 491 U C5 C N N 492 U C6 C N N 493 U HOP3 H N N 494 U HOP2 H N N 495 U "H5'" H N N 496 U "H5''" H N N 497 U "H4'" H N N 498 U "H3'" H N N 499 U "HO3'" H N N 500 U "H2'" H N N 501 U "HO2'" H N N 502 U "H1'" H N N 503 U H3 H N N 504 U H5 H N N 505 U H6 H N N 506 VAL N N N N 507 VAL CA C N S 508 VAL C C N N 509 VAL O O N N 510 VAL CB C N N 511 VAL CG1 C N N 512 VAL CG2 C N N 513 VAL OXT O N N 514 VAL H H N N 515 VAL H2 H N N 516 VAL HA H N N 517 VAL HB H N N 518 VAL HG11 H N N 519 VAL HG12 H N N 520 VAL HG13 H N N 521 VAL HG21 H N N 522 VAL HG22 H N N 523 VAL HG23 H N N 524 VAL HXT H N N 525 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 ILE N CA sing N N 254 ILE N H sing N N 255 ILE N H2 sing N N 256 ILE CA C sing N N 257 ILE CA CB sing N N 258 ILE CA HA sing N N 259 ILE C O doub N N 260 ILE C OXT sing N N 261 ILE CB CG1 sing N N 262 ILE CB CG2 sing N N 263 ILE CB HB sing N N 264 ILE CG1 CD1 sing N N 265 ILE CG1 HG12 sing N N 266 ILE CG1 HG13 sing N N 267 ILE CG2 HG21 sing N N 268 ILE CG2 HG22 sing N N 269 ILE CG2 HG23 sing N N 270 ILE CD1 HD11 sing N N 271 ILE CD1 HD12 sing N N 272 ILE CD1 HD13 sing N N 273 ILE OXT HXT sing N N 274 LEU N CA sing N N 275 LEU N H sing N N 276 LEU N H2 sing N N 277 LEU CA C sing N N 278 LEU CA CB sing N N 279 LEU CA HA sing N N 280 LEU C O doub N N 281 LEU C OXT sing N N 282 LEU CB CG sing N N 283 LEU CB HB2 sing N N 284 LEU CB HB3 sing N N 285 LEU CG CD1 sing N N 286 LEU CG CD2 sing N N 287 LEU CG HG sing N N 288 LEU CD1 HD11 sing N N 289 LEU CD1 HD12 sing N N 290 LEU CD1 HD13 sing N N 291 LEU CD2 HD21 sing N N 292 LEU CD2 HD22 sing N N 293 LEU CD2 HD23 sing N N 294 LEU OXT HXT sing N N 295 LYS N CA sing N N 296 LYS N H sing N N 297 LYS N H2 sing N N 298 LYS CA C sing N N 299 LYS CA CB sing N N 300 LYS CA HA sing N N 301 LYS C O doub N N 302 LYS C OXT sing N N 303 LYS CB CG sing N N 304 LYS CB HB2 sing N N 305 LYS CB HB3 sing N N 306 LYS CG CD sing N N 307 LYS CG HG2 sing N N 308 LYS CG HG3 sing N N 309 LYS CD CE sing N N 310 LYS CD HD2 sing N N 311 LYS CD HD3 sing N N 312 LYS CE NZ sing N N 313 LYS CE HE2 sing N N 314 LYS CE HE3 sing N N 315 LYS NZ HZ1 sing N N 316 LYS NZ HZ2 sing N N 317 LYS NZ HZ3 sing N N 318 LYS OXT HXT sing N N 319 MET N CA sing N N 320 MET N H sing N N 321 MET N H2 sing N N 322 MET CA C sing N N 323 MET CA CB sing N N 324 MET CA HA sing N N 325 MET C O doub N N 326 MET C OXT sing N N 327 MET CB CG sing N N 328 MET CB HB2 sing N N 329 MET CB HB3 sing N N 330 MET CG SD sing N N 331 MET CG HG2 sing N N 332 MET CG HG3 sing N N 333 MET SD CE sing N N 334 MET CE HE1 sing N N 335 MET CE HE2 sing N N 336 MET CE HE3 sing N N 337 MET OXT HXT sing N N 338 PHE N CA sing N N 339 PHE N H sing N N 340 PHE N H2 sing N N 341 PHE CA C sing N N 342 PHE CA CB sing N N 343 PHE CA HA sing N N 344 PHE C O doub N N 345 PHE C OXT sing N N 346 PHE CB CG sing N N 347 PHE CB HB2 sing N N 348 PHE CB HB3 sing N N 349 PHE CG CD1 doub Y N 350 PHE CG CD2 sing Y N 351 PHE CD1 CE1 sing Y N 352 PHE CD1 HD1 sing N N 353 PHE CD2 CE2 doub Y N 354 PHE CD2 HD2 sing N N 355 PHE CE1 CZ doub Y N 356 PHE CE1 HE1 sing N N 357 PHE CE2 CZ sing Y N 358 PHE CE2 HE2 sing N N 359 PHE CZ HZ sing N N 360 PHE OXT HXT sing N N 361 PO4 P O1 doub N N 362 PO4 P O2 sing N N 363 PO4 P O3 sing N N 364 PO4 P O4 sing N N 365 PRO N CA sing N N 366 PRO N CD sing N N 367 PRO N H sing N N 368 PRO CA C sing N N 369 PRO CA CB sing N N 370 PRO CA HA sing N N 371 PRO C O doub N N 372 PRO C OXT sing N N 373 PRO CB CG sing N N 374 PRO CB HB2 sing N N 375 PRO CB HB3 sing N N 376 PRO CG CD sing N N 377 PRO CG HG2 sing N N 378 PRO CG HG3 sing N N 379 PRO CD HD2 sing N N 380 PRO CD HD3 sing N N 381 PRO OXT HXT sing N N 382 SER N CA sing N N 383 SER N H sing N N 384 SER N H2 sing N N 385 SER CA C sing N N 386 SER CA CB sing N N 387 SER CA HA sing N N 388 SER C O doub N N 389 SER C OXT sing N N 390 SER CB OG sing N N 391 SER CB HB2 sing N N 392 SER CB HB3 sing N N 393 SER OG HG sing N N 394 SER OXT HXT sing N N 395 THR N CA sing N N 396 THR N H sing N N 397 THR N H2 sing N N 398 THR CA C sing N N 399 THR CA CB sing N N 400 THR CA HA sing N N 401 THR C O doub N N 402 THR C OXT sing N N 403 THR CB OG1 sing N N 404 THR CB CG2 sing N N 405 THR CB HB sing N N 406 THR OG1 HG1 sing N N 407 THR CG2 HG21 sing N N 408 THR CG2 HG22 sing N N 409 THR CG2 HG23 sing N N 410 THR OXT HXT sing N N 411 TRP N CA sing N N 412 TRP N H sing N N 413 TRP N H2 sing N N 414 TRP CA C sing N N 415 TRP CA CB sing N N 416 TRP CA HA sing N N 417 TRP C O doub N N 418 TRP C OXT sing N N 419 TRP CB CG sing N N 420 TRP CB HB2 sing N N 421 TRP CB HB3 sing N N 422 TRP CG CD1 doub Y N 423 TRP CG CD2 sing Y N 424 TRP CD1 NE1 sing Y N 425 TRP CD1 HD1 sing N N 426 TRP CD2 CE2 doub Y N 427 TRP CD2 CE3 sing Y N 428 TRP NE1 CE2 sing Y N 429 TRP NE1 HE1 sing N N 430 TRP CE2 CZ2 sing Y N 431 TRP CE3 CZ3 doub Y N 432 TRP CE3 HE3 sing N N 433 TRP CZ2 CH2 doub Y N 434 TRP CZ2 HZ2 sing N N 435 TRP CZ3 CH2 sing Y N 436 TRP CZ3 HZ3 sing N N 437 TRP CH2 HH2 sing N N 438 TRP OXT HXT sing N N 439 TYR N CA sing N N 440 TYR N H sing N N 441 TYR N H2 sing N N 442 TYR CA C sing N N 443 TYR CA CB sing N N 444 TYR CA HA sing N N 445 TYR C O doub N N 446 TYR C OXT sing N N 447 TYR CB CG sing N N 448 TYR CB HB2 sing N N 449 TYR CB HB3 sing N N 450 TYR CG CD1 doub Y N 451 TYR CG CD2 sing Y N 452 TYR CD1 CE1 sing Y N 453 TYR CD1 HD1 sing N N 454 TYR CD2 CE2 doub Y N 455 TYR CD2 HD2 sing N N 456 TYR CE1 CZ doub Y N 457 TYR CE1 HE1 sing N N 458 TYR CE2 CZ sing Y N 459 TYR CE2 HE2 sing N N 460 TYR CZ OH sing N N 461 TYR OH HH sing N N 462 TYR OXT HXT sing N N 463 U OP3 P sing N N 464 U OP3 HOP3 sing N N 465 U P OP1 doub N N 466 U P OP2 sing N N 467 U P "O5'" sing N N 468 U OP2 HOP2 sing N N 469 U "O5'" "C5'" sing N N 470 U "C5'" "C4'" sing N N 471 U "C5'" "H5'" sing N N 472 U "C5'" "H5''" sing N N 473 U "C4'" "O4'" sing N N 474 U "C4'" "C3'" sing N N 475 U "C4'" "H4'" sing N N 476 U "O4'" "C1'" sing N N 477 U "C3'" "O3'" sing N N 478 U "C3'" "C2'" sing N N 479 U "C3'" "H3'" sing N N 480 U "O3'" "HO3'" sing N N 481 U "C2'" "O2'" sing N N 482 U "C2'" "C1'" sing N N 483 U "C2'" "H2'" sing N N 484 U "O2'" "HO2'" sing N N 485 U "C1'" N1 sing N N 486 U "C1'" "H1'" sing N N 487 U N1 C2 sing N N 488 U N1 C6 sing N N 489 U C2 O2 doub N N 490 U C2 N3 sing N N 491 U N3 C4 sing N N 492 U N3 H3 sing N N 493 U C4 O4 doub N N 494 U C4 C5 sing N N 495 U C5 C6 doub N N 496 U C5 H5 sing N N 497 U C6 H6 sing N N 498 VAL N CA sing N N 499 VAL N H sing N N 500 VAL N H2 sing N N 501 VAL CA C sing N N 502 VAL CA CB sing N N 503 VAL CA HA sing N N 504 VAL C O doub N N 505 VAL C OXT sing N N 506 VAL CB CG1 sing N N 507 VAL CB CG2 sing N N 508 VAL CB HB sing N N 509 VAL CG1 HG11 sing N N 510 VAL CG1 HG12 sing N N 511 VAL CG1 HG13 sing N N 512 VAL CG2 HG21 sing N N 513 VAL CG2 HG22 sing N N 514 VAL CG2 HG23 sing N N 515 VAL OXT HXT sing N N 516 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4PMI 'double helix' 4PMI 'a-form double helix' 4PMI tetraloop 4PMI 'bulge loop' 4PMI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A U 40 1_555 -2.577 -0.656 -0.566 -12.998 -9.474 0.633 1 A_G36:U82_A A 36 ? A 82 ? 28 1 1 A G 2 1_555 A C 39 1_555 -0.659 -0.181 -0.068 -11.804 -5.707 2.820 2 A_G37:C81_A A 37 ? A 81 ? 19 1 1 A G 3 1_555 A C 38 1_555 -0.066 -0.052 -0.312 -11.583 -5.794 2.482 3 A_G38:C80_A A 38 ? A 80 ? 19 1 1 A A 4 1_555 A U 37 1_555 0.176 -0.138 0.397 1.025 -6.097 4.278 4 A_A39:U79_A A 39 ? A 79 ? 20 1 1 A G 5 1_555 A C 36 1_555 0.496 -0.113 0.196 -4.616 -16.635 1.186 5 A_G40:C78_A A 40 ? A 78 ? 19 1 1 A U 6 1_555 A G 35 1_555 1.980 -0.526 0.180 -1.141 -10.827 -6.209 6 A_U41:G77_A A 41 ? A 77 ? 28 1 1 A A 9 1_555 A G 34 1_555 -0.330 1.562 -0.412 -12.401 12.648 -15.032 7 A_A44:G76_A A 44 ? A 76 ? 8 1 1 A U 10 1_555 A A 33 1_555 0.106 0.014 -0.167 3.545 -18.269 -0.604 8 A_U45:A75_A A 45 ? A 75 ? 20 1 1 A G 11 1_555 A C 32 1_555 -0.005 -0.086 0.265 7.638 -7.851 1.268 9 A_G46:C74_A A 46 ? A 74 ? 19 1 1 A G 12 1_555 A A 31 1_555 0.167 1.742 0.787 -21.507 -40.362 -22.616 10 A_G47:A73_A A 47 ? A 73 ? ? ? 1 A G 13 1_555 A G 29 1_555 1.122 1.125 -0.470 -26.258 -3.506 -175.104 11 A_G48:G71_A A 48 ? A 71 ? 3 2 1 A C 14 1_555 A G 28 1_555 0.191 -0.120 -0.011 6.268 -15.450 -1.324 12 A_C49:G70_A A 49 ? A 70 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.175 0.383 -0.186 -4.161 -14.664 7.372 13 A_G50:C69_A A 50 ? A 69 ? ? 1 1 A C 16 1_555 A G 25 1_555 -0.760 -0.120 0.016 9.674 -13.412 -1.470 14 A_C51:G67_A A 51 ? A 67 ? 19 1 1 A A 17 1_555 A U 24 1_555 0.107 -0.092 0.070 1.914 -13.908 4.297 15 A_A52:U66_A A 52 ? A 66 ? 20 1 1 A C 18 1_555 A G 23 1_555 0.890 -0.282 -0.057 3.414 -11.831 2.589 16 A_C53:G58_A A 53 ? A 58 ? 19 1 1 A U 19 1_555 A G 22 1_555 1.084 -4.715 0.230 -9.651 -6.948 -106.060 17 A_U54:G57_A A 54 ? A 57 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A U 40 1_555 A G 2 1_555 A C 39 1_555 0.018 -1.508 3.238 -6.506 4.799 38.352 -2.804 -0.777 2.993 7.208 9.771 39.164 1 AA_G36G37:C81U82_AA A 36 ? A 82 ? A 37 ? A 81 ? 1 A G 2 1_555 A C 39 1_555 A G 3 1_555 A C 38 1_555 0.101 -1.971 3.351 3.333 2.071 31.960 -3.926 0.418 3.214 3.744 -6.025 32.194 2 AA_G37G38:C80C81_AA A 37 ? A 81 ? A 38 ? A 80 ? 1 A G 3 1_555 A C 38 1_555 A A 4 1_555 A U 37 1_555 -0.120 -1.326 2.889 -4.892 1.967 30.050 -2.863 -0.624 2.783 3.756 9.344 30.499 3 AA_G38A39:U79C80_AA A 38 ? A 80 ? A 39 ? A 79 ? 1 A A 4 1_555 A U 37 1_555 A G 5 1_555 A C 36 1_555 0.259 -1.642 3.291 4.541 9.727 32.155 -4.297 0.245 2.705 16.980 -7.927 33.855 4 AA_A39G40:C78U79_AA A 39 ? A 79 ? A 40 ? A 78 ? 1 A G 5 1_555 A C 36 1_555 A U 6 1_555 A G 35 1_555 -0.263 -1.214 3.057 2.279 2.904 44.340 -1.850 0.541 2.959 3.840 -3.013 44.485 5 AA_G40U41:G77C78_AA A 40 ? A 78 ? A 41 ? A 77 ? 1 A U 6 1_555 A G 35 1_555 A A 9 1_555 A G 34 1_555 2.951 -0.179 5.496 30.483 -19.550 4.963 6.316 5.587 3.315 -44.515 -69.409 36.541 6 AA_U41A44:G76G77_AA A 41 ? A 77 ? A 44 ? A 76 ? 1 A A 9 1_555 A G 34 1_555 A U 10 1_555 A A 33 1_555 0.186 -1.686 3.081 -5.157 15.384 23.391 -6.234 -1.316 1.612 33.294 11.161 28.403 7 AA_A44U45:A75G76_AA A 44 ? A 76 ? A 45 ? A 75 ? 1 A U 10 1_555 A A 33 1_555 A G 11 1_555 A C 32 1_555 0.691 -1.481 2.967 2.627 25.016 29.728 -4.576 -0.795 1.405 40.789 -4.283 38.757 8 AA_U45G46:C74A75_AA A 45 ? A 75 ? A 46 ? A 74 ? 1 A G 11 1_555 A C 32 1_555 A G 12 1_555 A A 31 1_555 -2.330 -0.416 3.675 -10.668 -11.634 44.692 0.641 1.844 4.082 -14.765 13.538 47.263 9 AA_G46G47:A73C74_AA A 46 ? A 74 ? A 47 ? A 73 ? 1 A G 12 1_555 A A 31 1_555 A G 13 1_555 A G 29 1_555 -0.909 1.176 2.890 9.444 2.895 90.256 0.776 0.803 2.834 2.037 -6.647 90.679 10 AA_G47G48:G71A73_AA A 47 ? A 73 ? A 48 ? A 71 ? 1 A G 13 1_555 A G 29 1_555 A C 14 1_555 A G 28 1_555 -1.694 0.697 3.234 -15.850 -1.778 -59.987 -0.601 -2.335 2.769 1.745 -15.557 -61.880 11 AA_G48C49:G70G71_AA A 48 ? A 71 ? A 49 ? A 70 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 1.069 -1.631 3.321 -0.217 13.296 34.595 -4.232 -1.712 2.539 21.405 0.349 36.990 12 AA_C49G50:C69G70_AA A 49 ? A 70 ? A 50 ? A 69 ? 1 A G 15 1_555 A C 27 1_555 A C 16 1_555 A G 25 1_555 0.803 -1.508 2.854 -2.233 -1.136 38.267 -2.173 -1.466 2.846 -1.731 3.402 38.346 13 AA_G50C51:G67C69_AA A 50 ? A 69 ? A 51 ? A 67 ? 1 A C 16 1_555 A G 25 1_555 A A 17 1_555 A U 24 1_555 0.316 -1.529 3.246 -2.484 14.094 38.585 -3.582 -0.697 2.535 20.489 3.611 41.058 14 AA_C51A52:U66G67_AA A 51 ? A 67 ? A 52 ? A 66 ? 1 A A 17 1_555 A U 24 1_555 A C 18 1_555 A G 23 1_555 0.067 -1.559 3.124 0.929 4.859 35.766 -3.151 0.013 2.895 7.864 -1.504 36.095 15 AA_A52C53:G58U66_AA A 52 ? A 66 ? A 53 ? A 58 ? 1 A C 18 1_555 A G 23 1_555 A U 19 1_555 A G 22 1_555 -1.376 -0.792 3.303 8.020 9.146 93.472 -0.706 1.084 3.137 6.259 -5.489 94.078 16 AA_C53U54:G57G58_AA A 53 ? A 58 ? A 54 ? A 57 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number P50GM082250 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 3LPH '3lph, 1etf' 2 ? 'experimental model' PDB 1ETF '3lph, 1etf' #