data_4PR6 # _entry.id 4PR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4PR6 NDB NA2947 RCSB RCSB085120 WWPDB D_1000085120 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2014-10-29 _pdbx_database_PDB_obs_spr.pdb_id 4PR6 _pdbx_database_PDB_obs_spr.replace_pdb_id 1CX0 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4PRF _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4PR6 _pdbx_database_status.recvd_initial_deposition_date 2014-03-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kapral, G.J.' 1 'Jain, S.' 2 'Noeske, J.' 3 'Doudna, J.A.' 4 'Richardson, D.C.' 5 'Richardson, J.S.' 6 # _citation.id primary _citation.title 'New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 12833 _citation.page_last 12846 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25326328 _citation.pdbx_database_id_DOI 10.1093/nar/gku992 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kapral, G.J.' 1 primary 'Jain, S.' 2 primary 'Noeske, J.' 3 primary 'Doudna, J.A.' 4 primary 'Richardson, D.C.' 5 primary 'Richardson, J.S.' 6 # _cell.entry_id 4PR6 _cell.length_a 109.350 _cell.length_b 109.350 _cell.length_c 190.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4PR6 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HDV RIBOZYME SELF-CLEAVED' 46404.559 1 ? ? ? ? 2 polymer man 'U1 small nuclear ribonucleoprotein A' 11168.391 1 ? 'Y31H, Q36R' 'RNA BINDING DOMAIN, UNP residues 101-244' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 16 ? ? ? ? 4 water nat water 18.015 83 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'U1 snRNP A, U1-A, U1A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no ;GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGACGGCCGGCA UGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC ; ;GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGACGGCCGGCA UGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC ; B ? 2 'polypeptide(L)' no yes ;PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK(MSE)RGQAFVIFKEVSSATNALRS(MSE)QGF PFYDKP(MSE)RIQYAKTDSDIIAK(MSE)A ; ;PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR IQYAKTDSDIIAKMA ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 C n 1 8 A n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 C n 1 14 C n 1 15 C n 1 16 A n 1 17 G n 1 18 C n 1 19 C n 1 20 U n 1 21 C n 1 22 C n 1 23 U n 1 24 C n 1 25 G n 1 26 C n 1 27 U n 1 28 G n 1 29 G n 1 30 C n 1 31 G n 1 32 C n 1 33 C n 1 34 G n 1 35 G n 1 36 C n 1 37 U n 1 38 G n 1 39 G n 1 40 G n 1 41 C n 1 42 A n 1 43 A n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 A n 1 49 U n 1 50 U n 1 51 G n 1 52 C n 1 53 A n 1 54 C n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 G n 1 60 U n 1 61 G n 1 62 G n 1 63 C n 1 64 G n 1 65 A n 1 66 A n 1 67 U n 1 68 G n 1 69 G n 1 70 G n 1 71 A n 1 72 C n 1 73 G n 1 74 G n 1 75 C n 1 76 C n 1 77 G n 1 78 G n 1 79 C n 1 80 A n 1 81 U n 1 82 G n 1 83 G n 1 84 U n 1 85 C n 1 86 C n 1 87 C n 1 88 A n 1 89 G n 1 90 C n 1 91 C n 1 92 U n 1 93 C n 1 94 C n 1 95 U n 1 96 C n 1 97 G n 1 98 C n 1 99 U n 1 100 G n 1 101 G n 1 102 C n 1 103 G n 1 104 C n 1 105 C n 1 106 G n 1 107 G n 1 108 C n 1 109 U n 1 110 G n 1 111 G n 1 112 G n 1 113 C n 1 114 A n 1 115 A n 1 116 C n 1 117 A n 1 118 C n 1 119 C n 1 120 A n 1 121 U n 1 122 U n 1 123 G n 1 124 C n 1 125 A n 1 126 C n 1 127 U n 1 128 C n 1 129 C n 1 130 G n 1 131 G n 1 132 U n 1 133 G n 1 134 G n 1 135 C n 1 136 G n 1 137 A n 1 138 A n 1 139 U n 1 140 G n 1 141 G n 1 142 G n 1 143 A n 1 144 C n 2 1 PRO n 2 2 GLU n 2 3 THR n 2 4 ARG n 2 5 PRO n 2 6 ASN n 2 7 HIS n 2 8 THR n 2 9 ILE n 2 10 TYR n 2 11 ILE n 2 12 ASN n 2 13 ASN n 2 14 LEU n 2 15 ASN n 2 16 GLU n 2 17 LYS n 2 18 ILE n 2 19 LYS n 2 20 LYS n 2 21 ASP n 2 22 GLU n 2 23 LEU n 2 24 LYS n 2 25 LYS n 2 26 SER n 2 27 LEU n 2 28 HIS n 2 29 ALA n 2 30 ILE n 2 31 PHE n 2 32 SER n 2 33 ARG n 2 34 PHE n 2 35 GLY n 2 36 GLN n 2 37 ILE n 2 38 LEU n 2 39 ASP n 2 40 ILE n 2 41 LEU n 2 42 VAL n 2 43 SER n 2 44 ARG n 2 45 SER n 2 46 LEU n 2 47 LYS n 2 48 MSE n 2 49 ARG n 2 50 GLY n 2 51 GLN n 2 52 ALA n 2 53 PHE n 2 54 VAL n 2 55 ILE n 2 56 PHE n 2 57 LYS n 2 58 GLU n 2 59 VAL n 2 60 SER n 2 61 SER n 2 62 ALA n 2 63 THR n 2 64 ASN n 2 65 ALA n 2 66 LEU n 2 67 ARG n 2 68 SER n 2 69 MSE n 2 70 GLN n 2 71 GLY n 2 72 PHE n 2 73 PRO n 2 74 PHE n 2 75 TYR n 2 76 ASP n 2 77 LYS n 2 78 PRO n 2 79 MSE n 2 80 ARG n 2 81 ILE n 2 82 GLN n 2 83 TYR n 2 84 ALA n 2 85 LYS n 2 86 THR n 2 87 ASP n 2 88 SER n 2 89 ASP n 2 90 ILE n 2 91 ILE n 2 92 ALA n 2 93 LYS n 2 94 MSE n 2 95 ALA n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SNRPA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain B834 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'T7 expression plasmid (A1-98 Y31H, Q36R)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro transcription' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN P09012 2 ;PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR IQYAKTDSDIIAK ; 4 ? 2 PDB 4PR6 4PR6 1 ;GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGACGGCCGGCA UGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC ; ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4PR6 A 1 ? 93 ? P09012 4 ? 96 ? 4 96 2 2 4PR6 B 1 ? 144 ? 4PR6 101 ? 244 ? 101 244 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4PR6 HIS A 28 ? UNP P09012 TYR 31 'ENGINEERED MUTATION' 31 1 1 4PR6 ARG A 33 ? UNP P09012 GLN 36 'ENGINEERED MUTATION' 36 2 1 4PR6 MSE A 94 ? UNP P09012 ? ? 'EXPRESSION TAG' 97 3 1 4PR6 ALA A 95 ? UNP P09012 ? ? 'EXPRESSION TAG' 98 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4PR6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;PEG MME 2000, LITHIUM SULPHATE, SPERMINE, TRIS, COBALT HEXAMMINE, MAGNESIUM CHLORIDE, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1998-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9209 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9209 # _reflns.entry_id 4PR6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.3 _reflns.number_obs 18903 _reflns.number_all 19773 _reflns.percent_possible_obs 95.6 _reflns.pdbx_Rmerge_I_obs 0.0660000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.9 _reflns.B_iso_Wilson_estimate 47.9 _reflns.pdbx_redundancy 3.84 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.4 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs 0.0410000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.84 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4PR6 _refine.ls_number_reflns_obs 18903 _refine.ls_number_reflns_all 18903 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.577 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs 95.67 _refine.ls_R_factor_obs 0.2028 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1985 _refine.ls_R_factor_R_free 0.2408 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.86 _refine.ls_number_reflns_R_free 1863 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 66.8 _refine.aniso_B[1][1] -9.57 _refine.aniso_B[2][2] -9.57 _refine.aniso_B[3][3] 19.15 _refine.aniso_B[1][2] 1.53 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values CNS _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.pdbx_overall_phase_error 30.11 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 771 _refine_hist.pdbx_number_atoms_nucleic_acid 1532 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 2402 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 18.577 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.005 ? ? 2555 ? 'X-RAY DIFFRACTION' f_angle_d 0.678 ? ? 3806 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 12.643 ? ? 1198 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.027 ? ? 486 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 210 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3000 2.3621 1296 0.3514 97.00 0.3991 0.022 . 153 . . . . 'X-RAY DIFFRACTION' . 2.3621 2.4315 1278 0.3272 97.00 0.3540 0.022 . 164 . . . . 'X-RAY DIFFRACTION' . 2.4315 2.5098 1285 0.3124 96.00 0.3354 0.022 . 144 . . . . 'X-RAY DIFFRACTION' . 2.5098 2.5993 1313 0.2776 97.00 0.3611 0.022 . 151 . . . . 'X-RAY DIFFRACTION' . 2.5993 2.7031 1316 0.2690 96.00 0.2952 0.022 . 135 . . . . 'X-RAY DIFFRACTION' . 2.7031 2.8257 1341 0.2601 97.00 0.3347 0.022 . 130 . . . . 'X-RAY DIFFRACTION' . 2.8257 2.9741 1343 0.2707 97.00 0.3057 0.022 . 116 . . . . 'X-RAY DIFFRACTION' . 2.9741 3.1596 1335 0.2331 98.00 0.3079 0.022 . 137 . . . . 'X-RAY DIFFRACTION' . 3.1596 3.4022 1328 0.2112 98.00 0.2612 0.022 . 155 . . . . 'X-RAY DIFFRACTION' . 3.4022 3.7420 1350 0.1890 97.00 0.2275 0.022 . 139 . . . . 'X-RAY DIFFRACTION' . 3.7420 4.2777 1328 0.1647 96.00 0.2097 0.022 . 142 . . . . 'X-RAY DIFFRACTION' . 4.2777 5.3678 1297 0.1440 95.00 0.1769 0.022 . 158 . . . . 'X-RAY DIFFRACTION' . 5.3678 18.5776 1218 0.1583 84.00 0.2047 0.022 . 139 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4PR6 _struct.title 'A Second Look at the HDV Ribozyme Structure and Dynamics.' _struct.pdbx_descriptor 'PROTEIN/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4PR6 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text ;Base Sequence, Binding Sites, Catalysis, Cloning, Molecular, Computer Graphics, Escherichia coli, Hepatitis Delta Virus, Models, Molecular Sequence Data, Nucleic Acid Conformation, RNA, Catalytic, Viral, RNA-Binding Proteins, Ribonucleoprotein, U1 Small Nuclear, RNA BINDING PROTEIN/RNA, RNA BINDING PROTEIN-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 4 ? T N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS B 19 ? SER B 32 ? LYS A 22 SER A 35 1 ? 14 HELX_P HELX_P2 2 ARG B 33 ? GLY B 35 ? ARG A 36 GLY A 38 5 ? 3 HELX_P HELX_P3 3 GLU B 58 ? GLN B 70 ? GLU A 61 GLN A 73 1 ? 13 HELX_P HELX_P4 4 SER B 88 ? LYS B 93 ? SER A 91 LYS A 96 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B LYS 47 C ? ? ? 1_555 B MSE 48 N ? ? A LYS 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? B MSE 48 C ? ? ? 1_555 B ARG 49 N ? ? A MSE 51 A ARG 52 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? B SER 68 C ? ? ? 1_555 B MSE 69 N ? ? A SER 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? B MSE 69 C ? ? ? 1_555 B GLN 70 N ? ? A MSE 72 A GLN 73 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? B PRO 78 C ? ? ? 1_555 B MSE 79 N ? ? A PRO 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.317 ? covale6 covale ? ? B MSE 79 C ? ? ? 1_555 B ARG 80 N ? ? A MSE 82 A ARG 83 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? B LYS 93 C ? ? ? 1_555 B MSE 94 N ? ? A LYS 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? B MSE 94 C ? ? ? 1_555 B ALA 95 N ? ? A MSE 97 A ALA 98 1_555 ? ? ? ? ? ? ? 1.333 ? metalc1 metalc ? ? B SER 45 OG ? ? ? 1_555 Q MG . MG ? ? A SER 48 A MG 102 1_555 ? ? ? ? ? ? ? 2.049 ? metalc2 metalc ? ? B ASP 21 OD1 ? ? ? 1_555 R MG . MG ? ? A ASP 24 A MG 103 1_555 ? ? ? ? ? ? ? 2.226 ? metalc3 metalc ? ? F MG . MG ? ? ? 1_555 S HOH . O ? ? B MG 404 B HOH 509 1_555 ? ? ? ? ? ? ? 2.242 ? metalc4 metalc ? ? A C 24 OP1 A ? ? 1_555 L MG . MG A ? B C 124 B MG 410 1_555 ? ? ? ? ? ? ? 2.437 ? metalc5 metalc ? ? A C 24 OP2 A ? ? 1_555 L MG . MG A ? B C 124 B MG 410 1_555 ? ? ? ? ? ? ? 2.453 ? metalc6 metalc ? ? A C 18 OP2 ? ? ? 1_555 H MG . MG ? ? B C 118 B MG 406 1_555 ? ? ? ? ? ? ? 2.482 ? metalc7 metalc ? ? B SER 45 O ? ? ? 1_555 Q MG . MG ? ? A SER 48 A MG 102 1_555 ? ? ? ? ? ? ? 2.488 ? metalc8 metalc ? ? A C 7 "O2'" ? ? ? 1_555 M MG . MG ? ? B C 107 B MG 411 1_555 ? ? ? ? ? ? ? 2.548 ? metalc9 metalc ? ? A C 19 OP2 ? ? ? 1_555 I MG . MG ? ? B C 119 B MG 407 1_555 ? ? ? ? ? ? ? 2.581 ? metalc10 metalc ? ? A C 7 O2 ? ? ? 1_555 M MG . MG ? ? B C 107 B MG 411 1_555 ? ? ? ? ? ? ? 2.587 ? metalc11 metalc ? ? A C 36 OP2 ? ? ? 1_555 K MG . MG ? ? B C 136 B MG 409 1_555 ? ? ? ? ? ? ? 2.640 ? metalc12 metalc ? ? A A 53 OP2 ? ? ? 1_555 E MG . MG ? ? B A 153 B MG 403 1_555 ? ? ? ? ? ? ? 2.708 ? metalc13 metalc ? ? A C 7 "O3'" ? ? ? 1_555 N MG . MG ? ? B C 107 B MG 412 1_555 ? ? ? ? ? ? ? 2.780 ? metalc14 metalc ? ? A C 52 "O2'" ? ? ? 1_555 E MG . MG ? ? B C 152 B MG 403 1_555 ? ? ? ? ? ? ? 2.793 ? metalc15 metalc ? ? A A 8 OP1 ? ? ? 1_555 N MG . MG ? ? B A 108 B MG 412 1_555 ? ? ? ? ? ? ? 2.878 ? metalc16 metalc ? ? A C 24 OP1 B ? ? 1_555 L MG . MG B ? B C 124 B MG 410 1_555 ? ? ? ? ? ? ? 2.882 ? metalc17 metalc ? ? A G 35 "O3'" ? ? ? 1_555 K MG . MG ? ? B G 135 B MG 409 1_555 ? ? ? ? ? ? ? 2.904 ? metalc18 metalc ? ? A G 17 OP1 ? ? ? 1_555 H MG . MG ? ? B G 117 B MG 406 1_555 ? ? ? ? ? ? ? 2.996 ? metalc19 metalc ? ? B ASP 21 O ? ? ? 1_555 R MG . MG ? ? A ASP 24 A MG 103 1_555 ? ? ? ? ? ? ? 2.997 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 37 O2 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A U 37 N3 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 35 N1 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 35 O6 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 35 N2 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 34 N1 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 34 O6 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 34 N2 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 33 O2 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 33 N4 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 32 N3 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 32 O2 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 32 N4 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 72 N3 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 72 O2 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 72 N4 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 71 N1 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 71 N6 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 70 N1 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 70 O6 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 70 N2 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 69 N1 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 69 O6 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 69 N2 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 68 N1 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 68 O6 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 68 N2 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 67 N3 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 30 N3 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 30 O2 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 30 N4 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 29 N1 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 29 O6 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 29 N2 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 28 N1 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 28 O6 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 28 N2 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 25 O6 ? ? B U 120 B G 125 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? hydrog46 hydrog ? ? A U 20 O4 ? ? ? 1_555 A G 25 N1 ? ? B U 120 B G 125 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? hydrog47 hydrog ? ? A U 20 O2 ? ? ? 1_555 A C 63 N4 ? ? B U 120 B C 163 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog48 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 39 N1 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 39 O6 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 39 N2 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A C 21 O2 ? ? ? 1_555 A A 42 N6 ? ? B C 121 B A 142 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog52 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 38 N1 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 38 O6 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 38 N2 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 66 N3 ? ? B G 129 B A 166 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog56 hydrog ? ? A C 30 N4 ? ? ? 1_555 A U 67 O4 ? ? B C 130 B U 167 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog57 hydrog ? ? A G 40 N2 ? ? ? 1_555 A G 62 O6 ? ? B G 140 B G 162 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? hydrog58 hydrog ? ? A C 41 O2 ? ? ? 1_555 A A 43 N6 ? ? B C 141 B A 143 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog59 hydrog ? ? A C 41 O2 ? ? ? 1_555 A C 44 N4 ? ? B C 141 B C 144 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog60 hydrog ? ? A C 41 N4 ? ? ? 1_555 A G 61 N7 ? ? B C 141 B G 161 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog61 hydrog ? ? A A 43 N1 ? ? ? 1_555 A G 62 N1 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog62 hydrog ? ? A A 43 N6 ? ? ? 1_555 A G 62 O6 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog63 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 61 N1 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 61 O6 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 61 N2 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 62 N2 ? ? B C 144 B G 162 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog67 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 60 N3 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 60 O4 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 59 N1 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 59 O6 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 59 N2 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 58 N1 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 58 O6 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 58 N2 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? A U 55 O2 ? ? ? 1_555 A C 56 N4 ? ? B U 155 B C 156 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 37 ? VAL B 42 ? ILE A 40 VAL A 45 A 2 ALA B 52 ? PHE B 56 ? ALA A 55 PHE A 59 A 3 THR B 8 ? ASN B 12 ? THR A 11 ASN A 15 A 4 ARG B 80 ? TYR B 83 ? ARG A 83 TYR A 86 B 1 PRO B 73 ? PHE B 74 ? PRO A 76 PHE A 77 B 2 LYS B 77 ? PRO B 78 ? LYS A 80 PRO A 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU B 38 ? N LEU A 41 O ILE B 55 ? O ILE A 58 A 2 3 O ALA B 52 ? O ALA A 55 N ILE B 11 ? N ILE A 14 A 3 4 N TYR B 10 ? N TYR A 13 O GLN B 82 ? O GLN A 85 B 1 2 N PHE B 74 ? N PHE A 77 O LYS B 77 ? O LYS A 80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 402' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG B 403' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 404' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 406' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG B 407' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG B 408' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 409' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 410' AC9 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG B 411' BC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 412' BC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG B 413' BC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 101' BC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 102' BC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 69 ? G B 169 . ? 1_555 ? 2 AC1 2 G A 70 ? G B 170 . ? 1_555 ? 3 AC2 3 C A 52 ? C B 152 . ? 1_555 ? 4 AC2 3 A A 53 ? A B 153 . ? 1_555 ? 5 AC2 3 HOH S . ? HOH B 501 . ? 1_555 ? 6 AC3 2 G A 38 ? G B 138 . ? 1_555 ? 7 AC3 2 HOH S . ? HOH B 509 . ? 1_555 ? 8 AC4 2 G A 17 ? G B 117 . ? 1_555 ? 9 AC4 2 C A 18 ? C B 118 . ? 1_555 ? 10 AC5 1 C A 19 ? C B 119 . ? 1_555 ? 11 AC6 1 G A 10 ? G B 110 . ? 1_555 ? 12 AC7 2 G A 35 ? G B 135 . ? 1_555 ? 13 AC7 2 C A 36 ? C B 136 . ? 1_555 ? 14 AC8 2 U A 23 ? U B 123 . ? 1_555 ? 15 AC8 2 C A 24 ? C B 124 . ? 1_555 ? 16 AC9 1 C A 7 ? C B 107 . ? 1_555 ? 17 BC1 2 C A 7 ? C B 107 . ? 1_555 ? 18 BC1 2 A A 8 ? A B 108 . ? 1_555 ? 19 BC2 1 A A 16 ? A B 116 . ? 1_555 ? 20 BC3 2 LYS B 20 ? LYS A 23 . ? 1_555 ? 21 BC3 2 LYS B 24 ? LYS A 27 . ? 1_555 ? 22 BC4 4 SER B 45 ? SER A 48 . ? 1_555 ? 23 BC4 4 LEU B 46 ? LEU A 49 . ? 1_555 ? 24 BC4 4 LYS B 47 ? LYS A 50 . ? 1_555 ? 25 BC4 4 MSE B 48 ? MSE A 51 . ? 1_555 ? 26 BC5 1 ASP B 21 ? ASP A 24 . ? 1_555 ? # _database_PDB_matrix.entry_id 4PR6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4PR6 _atom_sites.fract_transf_matrix[1][1] 0.009145 _atom_sites.fract_transf_matrix[1][2] 0.005280 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005244 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 101 101 G G B . n A 1 2 G 2 102 102 G G B . n A 1 3 C 3 103 103 C C B . n A 1 4 C 4 104 104 C C B . n A 1 5 G 5 105 105 G G B . n A 1 6 G 6 106 106 G G B . n A 1 7 C 7 107 107 C C B . n A 1 8 A 8 108 108 A A B . n A 1 9 U 9 109 109 U U B . n A 1 10 G 10 110 110 G G B . n A 1 11 G 11 111 111 G G B . n A 1 12 U 12 112 112 U U B . n A 1 13 C 13 113 113 C C B . n A 1 14 C 14 114 114 C C B . n A 1 15 C 15 115 115 C C B . n A 1 16 A 16 116 116 A A B . n A 1 17 G 17 117 117 G G B . n A 1 18 C 18 118 118 C C B . n A 1 19 C 19 119 119 C C B . n A 1 20 U 20 120 120 U U B . n A 1 21 C 21 121 121 C C B . n A 1 22 C 22 122 122 C C B . n A 1 23 U 23 123 123 U U B . n A 1 24 C 24 124 124 C C B . n A 1 25 G 25 125 125 G G B . n A 1 26 C 26 126 126 C C B . n A 1 27 U 27 127 127 U U B . n A 1 28 G 28 128 128 G G B . n A 1 29 G 29 129 129 G G B . n A 1 30 C 30 130 130 C C B . n A 1 31 G 31 131 131 G G B . n A 1 32 C 32 132 132 C C B . n A 1 33 C 33 133 133 C C B . n A 1 34 G 34 134 134 G G B . n A 1 35 G 35 135 135 G G B . n A 1 36 C 36 136 136 C C B . n A 1 37 U 37 137 137 U U B . n A 1 38 G 38 138 138 G G B . n A 1 39 G 39 139 139 G G B . n A 1 40 G 40 140 140 G G B . n A 1 41 C 41 141 141 C C B . n A 1 42 A 42 142 142 A A B . n A 1 43 A 43 143 143 A A B . n A 1 44 C 44 144 144 C C B . n A 1 45 A 45 145 145 A A B . n A 1 46 C 46 146 146 C C B . n A 1 47 C 47 147 147 C C B . n A 1 48 A 48 148 148 A A B . n A 1 49 U 49 149 149 U U B . n A 1 50 U 50 150 150 U U B . n A 1 51 G 51 151 151 G G B . n A 1 52 C 52 152 152 C C B . n A 1 53 A 53 153 153 A A B . n A 1 54 C 54 154 154 C C B . n A 1 55 U 55 155 155 U U B . n A 1 56 C 56 156 156 C C B . n A 1 57 C 57 157 157 C C B . n A 1 58 G 58 158 158 G G B . n A 1 59 G 59 159 159 G G B . n A 1 60 U 60 160 160 U U B . n A 1 61 G 61 161 161 G G B . n A 1 62 G 62 162 162 G G B . n A 1 63 C 63 163 163 C C B . n A 1 64 G 64 164 164 G G B . n A 1 65 A 65 165 165 A A B . n A 1 66 A 66 166 166 A A B . n A 1 67 U 67 167 167 U U B . n A 1 68 G 68 168 168 G G B . n A 1 69 G 69 169 169 G G B . n A 1 70 G 70 170 170 G G B . n A 1 71 A 71 171 171 A A B . n A 1 72 C 72 172 172 C C B . n A 1 73 G 73 173 ? ? ? B . n A 1 74 G 74 174 ? ? ? B . n A 1 75 C 75 175 ? ? ? B . n A 1 76 C 76 176 ? ? ? B . n A 1 77 G 77 177 ? ? ? B . n A 1 78 G 78 178 ? ? ? B . n A 1 79 C 79 179 ? ? ? B . n A 1 80 A 80 180 ? ? ? B . n A 1 81 U 81 181 ? ? ? B . n A 1 82 G 82 182 ? ? ? B . n A 1 83 G 83 183 ? ? ? B . n A 1 84 U 84 184 ? ? ? B . n A 1 85 C 85 185 ? ? ? B . n A 1 86 C 86 186 ? ? ? B . n A 1 87 C 87 187 ? ? ? B . n A 1 88 A 88 188 ? ? ? B . n A 1 89 G 89 189 ? ? ? B . n A 1 90 C 90 190 ? ? ? B . n A 1 91 C 91 191 ? ? ? B . n A 1 92 U 92 192 ? ? ? B . n A 1 93 C 93 193 ? ? ? B . n A 1 94 C 94 194 ? ? ? B . n A 1 95 U 95 195 ? ? ? B . n A 1 96 C 96 196 ? ? ? B . n A 1 97 G 97 197 ? ? ? B . n A 1 98 C 98 198 ? ? ? B . n A 1 99 U 99 199 ? ? ? B . n A 1 100 G 100 200 ? ? ? B . n A 1 101 G 101 201 ? ? ? B . n A 1 102 C 102 202 ? ? ? B . n A 1 103 G 103 203 ? ? ? B . n A 1 104 C 104 204 ? ? ? B . n A 1 105 C 105 205 ? ? ? B . n A 1 106 G 106 206 ? ? ? B . n A 1 107 G 107 207 ? ? ? B . n A 1 108 C 108 208 ? ? ? B . n A 1 109 U 109 209 ? ? ? B . n A 1 110 G 110 210 ? ? ? B . n A 1 111 G 111 211 ? ? ? B . n A 1 112 G 112 212 ? ? ? B . n A 1 113 C 113 213 ? ? ? B . n A 1 114 A 114 214 ? ? ? B . n A 1 115 A 115 215 ? ? ? B . n A 1 116 C 116 216 ? ? ? B . n A 1 117 A 117 217 ? ? ? B . n A 1 118 C 118 218 ? ? ? B . n A 1 119 C 119 219 ? ? ? B . n A 1 120 A 120 220 ? ? ? B . n A 1 121 U 121 221 ? ? ? B . n A 1 122 U 122 222 ? ? ? B . n A 1 123 G 123 223 ? ? ? B . n A 1 124 C 124 224 ? ? ? B . n A 1 125 A 125 225 ? ? ? B . n A 1 126 C 126 226 ? ? ? B . n A 1 127 U 127 227 ? ? ? B . n A 1 128 C 128 228 ? ? ? B . n A 1 129 C 129 229 ? ? ? B . n A 1 130 G 130 230 ? ? ? B . n A 1 131 G 131 231 ? ? ? B . n A 1 132 U 132 232 ? ? ? B . n A 1 133 G 133 233 ? ? ? B . n A 1 134 G 134 234 ? ? ? B . n A 1 135 C 135 235 ? ? ? B . n A 1 136 G 136 236 ? ? ? B . n A 1 137 A 137 237 ? ? ? B . n A 1 138 A 138 238 ? ? ? B . n A 1 139 U 139 239 ? ? ? B . n A 1 140 G 140 240 ? ? ? B . n A 1 141 G 141 241 ? ? ? B . n A 1 142 G 142 242 ? ? ? B . n A 1 143 A 143 243 ? ? ? B . n A 1 144 C 144 244 ? ? ? B . n B 2 1 PRO 1 4 4 PRO PRO A . n B 2 2 GLU 2 5 5 GLU GLU A . n B 2 3 THR 3 6 6 THR THR A . n B 2 4 ARG 4 7 7 ARG ARG A . n B 2 5 PRO 5 8 8 PRO PRO A . n B 2 6 ASN 6 9 9 ASN ASN A . n B 2 7 HIS 7 10 10 HIS HIS A . n B 2 8 THR 8 11 11 THR THR A . n B 2 9 ILE 9 12 12 ILE ILE A . n B 2 10 TYR 10 13 13 TYR TYR A . n B 2 11 ILE 11 14 14 ILE ILE A . n B 2 12 ASN 12 15 15 ASN ASN A . n B 2 13 ASN 13 16 16 ASN ASN A . n B 2 14 LEU 14 17 17 LEU LEU A . n B 2 15 ASN 15 18 18 ASN ASN A . n B 2 16 GLU 16 19 19 GLU GLU A . n B 2 17 LYS 17 20 20 LYS LYS A . n B 2 18 ILE 18 21 21 ILE ILE A . n B 2 19 LYS 19 22 22 LYS LYS A . n B 2 20 LYS 20 23 23 LYS LYS A . n B 2 21 ASP 21 24 24 ASP ASP A . n B 2 22 GLU 22 25 25 GLU GLU A . n B 2 23 LEU 23 26 26 LEU LEU A . n B 2 24 LYS 24 27 27 LYS LYS A . n B 2 25 LYS 25 28 28 LYS LYS A . n B 2 26 SER 26 29 29 SER SER A . n B 2 27 LEU 27 30 30 LEU LEU A . n B 2 28 HIS 28 31 31 HIS HIS A . n B 2 29 ALA 29 32 32 ALA ALA A . n B 2 30 ILE 30 33 33 ILE ILE A . n B 2 31 PHE 31 34 34 PHE PHE A . n B 2 32 SER 32 35 35 SER SER A . n B 2 33 ARG 33 36 36 ARG ARG A . n B 2 34 PHE 34 37 37 PHE PHE A . n B 2 35 GLY 35 38 38 GLY GLY A . n B 2 36 GLN 36 39 39 GLN GLN A . n B 2 37 ILE 37 40 40 ILE ILE A . n B 2 38 LEU 38 41 41 LEU LEU A . n B 2 39 ASP 39 42 42 ASP ASP A . n B 2 40 ILE 40 43 43 ILE ILE A . n B 2 41 LEU 41 44 44 LEU LEU A . n B 2 42 VAL 42 45 45 VAL VAL A . n B 2 43 SER 43 46 46 SER SER A . n B 2 44 ARG 44 47 47 ARG ARG A . n B 2 45 SER 45 48 48 SER SER A . n B 2 46 LEU 46 49 49 LEU LEU A . n B 2 47 LYS 47 50 50 LYS LYS A . n B 2 48 MSE 48 51 51 MSE MSE A . n B 2 49 ARG 49 52 52 ARG ARG A . n B 2 50 GLY 50 53 53 GLY GLY A . n B 2 51 GLN 51 54 54 GLN GLN A . n B 2 52 ALA 52 55 55 ALA ALA A . n B 2 53 PHE 53 56 56 PHE PHE A . n B 2 54 VAL 54 57 57 VAL VAL A . n B 2 55 ILE 55 58 58 ILE ILE A . n B 2 56 PHE 56 59 59 PHE PHE A . n B 2 57 LYS 57 60 60 LYS LYS A . n B 2 58 GLU 58 61 61 GLU GLU A . n B 2 59 VAL 59 62 62 VAL VAL A . n B 2 60 SER 60 63 63 SER SER A . n B 2 61 SER 61 64 64 SER SER A . n B 2 62 ALA 62 65 65 ALA ALA A . n B 2 63 THR 63 66 66 THR THR A . n B 2 64 ASN 64 67 67 ASN ASN A . n B 2 65 ALA 65 68 68 ALA ALA A . n B 2 66 LEU 66 69 69 LEU LEU A . n B 2 67 ARG 67 70 70 ARG ARG A . n B 2 68 SER 68 71 71 SER SER A . n B 2 69 MSE 69 72 72 MSE MSE A . n B 2 70 GLN 70 73 73 GLN GLN A . n B 2 71 GLY 71 74 74 GLY GLY A . n B 2 72 PHE 72 75 75 PHE PHE A . n B 2 73 PRO 73 76 76 PRO PRO A . n B 2 74 PHE 74 77 77 PHE PHE A . n B 2 75 TYR 75 78 78 TYR TYR A . n B 2 76 ASP 76 79 79 ASP ASP A . n B 2 77 LYS 77 80 80 LYS LYS A . n B 2 78 PRO 78 81 81 PRO PRO A . n B 2 79 MSE 79 82 82 MSE MSE A . n B 2 80 ARG 80 83 83 ARG ARG A . n B 2 81 ILE 81 84 84 ILE ILE A . n B 2 82 GLN 82 85 85 GLN GLN A . n B 2 83 TYR 83 86 86 TYR TYR A . n B 2 84 ALA 84 87 87 ALA ALA A . n B 2 85 LYS 85 88 88 LYS LYS A . n B 2 86 THR 86 89 89 THR THR A . n B 2 87 ASP 87 90 90 ASP ASP A . n B 2 88 SER 88 91 91 SER SER A . n B 2 89 ASP 89 92 92 ASP ASP A . n B 2 90 ILE 90 93 93 ILE ILE A . n B 2 91 ILE 91 94 94 ILE ILE A . n B 2 92 ALA 92 95 95 ALA ALA A . n B 2 93 LYS 93 96 96 LYS LYS A . n B 2 94 MSE 94 97 97 MSE MSE A . n B 2 95 ALA 95 98 98 ALA ALA A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MSE 48 A MSE 51 ? MET SELENOMETHIONINE 2 B MSE 69 A MSE 72 ? MET SELENOMETHIONINE 3 B MSE 79 A MSE 82 ? MET SELENOMETHIONINE 4 B MSE 94 A MSE 97 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3290 ? 1 MORE -111 ? 1 'SSA (A^2)' 17090 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 245 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id T _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? B SER 45 ? A SER 48 ? 1_555 MG ? Q MG . ? A MG 102 ? 1_555 O ? B SER 45 ? A SER 48 ? 1_555 98.4 ? 2 OD1 ? B ASP 21 ? A ASP 24 ? 1_555 MG ? R MG . ? A MG 103 ? 1_555 O ? B ASP 21 ? A ASP 24 ? 1_555 80.8 ? 3 OP1 A A C 24 ? B C 124 ? 1_555 MG A L MG . ? B MG 410 ? 1_555 OP2 A A C 24 ? B C 124 ? 1_555 63.2 ? 4 OP2 ? A C 18 ? B C 118 ? 1_555 MG ? H MG . ? B MG 406 ? 1_555 OP1 ? A G 17 ? B G 117 ? 1_555 141.7 ? 5 "O2'" ? A C 7 ? B C 107 ? 1_555 MG ? M MG . ? B MG 411 ? 1_555 O2 ? A C 7 ? B C 107 ? 1_555 99.0 ? 6 OP2 ? A C 36 ? B C 136 ? 1_555 MG ? K MG . ? B MG 409 ? 1_555 "O3'" ? A G 35 ? B G 135 ? 1_555 53.6 ? 7 OP2 ? A A 53 ? B A 153 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 "O2'" ? A C 52 ? B C 152 ? 1_555 89.0 ? 8 "O3'" ? A C 7 ? B C 107 ? 1_555 MG ? N MG . ? B MG 412 ? 1_555 OP1 ? A A 8 ? B A 108 ? 1_555 52.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-29 2 'Structure model' 1 1 2014-11-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 PHENIX refinement '(phenix.refine: 1.8.4_1496)' ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id MSE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 97 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -108.27 _pdbx_validate_torsion.psi -76.31 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B G 173 ? A G 73 2 1 Y 1 B G 174 ? A G 74 3 1 Y 1 B C 175 ? A C 75 4 1 Y 1 B C 176 ? A C 76 5 1 Y 1 B G 177 ? A G 77 6 1 Y 1 B G 178 ? A G 78 7 1 Y 1 B C 179 ? A C 79 8 1 Y 1 B A 180 ? A A 80 9 1 Y 1 B U 181 ? A U 81 10 1 Y 1 B G 182 ? A G 82 11 1 Y 1 B G 183 ? A G 83 12 1 Y 1 B U 184 ? A U 84 13 1 Y 1 B C 185 ? A C 85 14 1 Y 1 B C 186 ? A C 86 15 1 Y 1 B C 187 ? A C 87 16 1 Y 1 B A 188 ? A A 88 17 1 Y 1 B G 189 ? A G 89 18 1 Y 1 B C 190 ? A C 90 19 1 Y 1 B C 191 ? A C 91 20 1 Y 1 B U 192 ? A U 92 21 1 Y 1 B C 193 ? A C 93 22 1 Y 1 B C 194 ? A C 94 23 1 Y 1 B U 195 ? A U 95 24 1 Y 1 B C 196 ? A C 96 25 1 Y 1 B G 197 ? A G 97 26 1 Y 1 B C 198 ? A C 98 27 1 Y 1 B U 199 ? A U 99 28 1 Y 1 B G 200 ? A G 100 29 1 Y 1 B G 201 ? A G 101 30 1 Y 1 B C 202 ? A C 102 31 1 Y 1 B G 203 ? A G 103 32 1 Y 1 B C 204 ? A C 104 33 1 Y 1 B C 205 ? A C 105 34 1 Y 1 B G 206 ? A G 106 35 1 Y 1 B G 207 ? A G 107 36 1 Y 1 B C 208 ? A C 108 37 1 Y 1 B U 209 ? A U 109 38 1 Y 1 B G 210 ? A G 110 39 1 Y 1 B G 211 ? A G 111 40 1 Y 1 B G 212 ? A G 112 41 1 Y 1 B C 213 ? A C 113 42 1 Y 1 B A 214 ? A A 114 43 1 Y 1 B A 215 ? A A 115 44 1 Y 1 B C 216 ? A C 116 45 1 Y 1 B A 217 ? A A 117 46 1 Y 1 B C 218 ? A C 118 47 1 Y 1 B C 219 ? A C 119 48 1 Y 1 B A 220 ? A A 120 49 1 Y 1 B U 221 ? A U 121 50 1 Y 1 B U 222 ? A U 122 51 1 Y 1 B G 223 ? A G 123 52 1 Y 1 B C 224 ? A C 124 53 1 Y 1 B A 225 ? A A 125 54 1 Y 1 B C 226 ? A C 126 55 1 Y 1 B U 227 ? A U 127 56 1 Y 1 B C 228 ? A C 128 57 1 Y 1 B C 229 ? A C 129 58 1 Y 1 B G 230 ? A G 130 59 1 Y 1 B G 231 ? A G 131 60 1 Y 1 B U 232 ? A U 132 61 1 Y 1 B G 233 ? A G 133 62 1 Y 1 B G 234 ? A G 134 63 1 Y 1 B C 235 ? A C 135 64 1 Y 1 B G 236 ? A G 136 65 1 Y 1 B A 237 ? A A 137 66 1 Y 1 B A 238 ? A A 138 67 1 Y 1 B U 239 ? A U 139 68 1 Y 1 B G 240 ? A G 140 69 1 Y 1 B G 241 ? A G 141 70 1 Y 1 B G 242 ? A G 142 71 1 Y 1 B A 243 ? A A 143 72 1 Y 1 B C 244 ? A C 144 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4PR6 'double helix' 4PR6 'a-form double helix' 4PR6 'hairpin loop' 4PR6 'bulge loop' 4PR6 'mismatched base pair' 4PR6 'internal loop' 4PR6 'triple helix' 4PR6 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 21 1_555 A G 39 1_555 -0.219 -0.125 -0.149 10.836 -26.192 0.713 1 B_C121:G139_B B 121 ? B 139 ? 19 1 1 A C 22 1_555 A G 38 1_555 -0.224 -0.050 -0.141 10.448 -8.251 -0.598 2 B_C122:G138_B B 122 ? B 138 ? 19 1 1 A G 1 1_555 A U 37 1_555 -2.680 -0.382 -0.354 -2.362 -0.605 0.033 3 B_G101:U137_B B 101 ? B 137 ? 28 1 1 A G 2 1_555 A C 36 1_555 -0.056 -0.277 -0.568 -8.299 -8.223 -0.057 4 B_G102:C136_B B 102 ? B 136 ? 19 1 1 A C 3 1_555 A G 35 1_555 -0.058 0.121 -0.779 5.321 -12.034 -1.715 5 B_C103:G135_B B 103 ? B 135 ? 19 1 1 A C 4 1_555 A G 34 1_555 -0.270 0.112 -0.241 6.675 -2.148 3.036 6 B_C104:G134_B B 104 ? B 134 ? 19 1 1 A G 5 1_555 A C 33 1_555 0.032 -0.131 0.305 3.934 -7.467 0.520 7 B_G105:C133_B B 105 ? B 133 ? 19 1 1 A G 6 1_555 A C 32 1_555 -0.073 -0.192 0.159 3.856 -13.598 1.811 8 B_G106:C132_B B 106 ? B 132 ? 19 1 1 A C 7 1_555 A G 31 1_555 0.886 0.025 -0.411 13.101 -16.139 2.500 9 B_C107:G131_B B 107 ? B 131 ? 19 1 1 A G 11 1_555 A C 72 1_555 -0.539 -0.007 0.754 -0.661 -7.313 1.470 10 B_G111:C172_B B 111 ? B 172 ? 19 1 1 A U 12 1_555 A A 71 1_555 0.053 -0.159 0.226 -1.428 -20.741 -0.627 11 B_U112:A171_B B 112 ? B 171 ? 20 1 1 A C 13 1_555 A G 70 1_555 0.274 -0.208 0.287 3.151 -9.421 1.122 12 B_C113:G170_B B 113 ? B 170 ? 19 1 1 A C 14 1_555 A G 69 1_555 -0.469 -0.160 -0.141 -0.780 -11.671 -0.835 13 B_C114:G169_B B 114 ? B 169 ? 19 1 1 A C 15 1_555 A G 68 1_555 0.356 0.056 -0.009 1.798 -9.947 0.808 14 B_C115:G168_B B 115 ? B 168 ? 19 1 1 A A 16 1_555 A U 67 1_555 -0.015 0.180 -0.280 -0.373 6.835 10.643 15 B_A116:U167_B B 116 ? B 167 ? ? 1 1 A G 17 1_555 A C 30 1_555 -0.260 -0.049 0.716 12.295 -19.639 -3.580 16 B_G117:C130_B B 117 ? B 130 ? 19 1 1 A C 18 1_555 A G 29 1_555 0.254 -0.250 0.423 4.616 -32.018 2.825 17 B_C118:G129_B B 118 ? B 129 ? 19 1 1 A C 19 1_555 A G 28 1_555 -0.126 -0.434 1.026 -8.458 -19.437 -4.776 18 B_C119:G128_B B 119 ? B 128 ? 19 1 1 A U 20 1_555 A G 25 1_555 0.019 1.243 -0.154 15.005 -16.257 -161.998 19 B_U120:G125_B B 120 ? B 125 ? 27 2 1 A A 43 1_555 A G 62 1_555 -0.289 1.634 -0.640 -12.885 -18.027 -16.705 20 B_A143:G162_B B 143 ? B 162 ? 8 1 1 A C 44 1_555 A G 61 1_555 0.428 0.031 -0.097 8.745 -26.532 3.566 21 B_C144:G161_B B 144 ? B 161 ? 19 1 1 A A 45 1_555 A U 60 1_555 -0.418 -0.005 0.057 -3.019 -13.857 -0.152 22 B_A145:U160_B B 145 ? B 160 ? 20 1 1 A C 46 1_555 A G 59 1_555 0.128 -0.215 -0.023 2.220 -13.816 1.029 23 B_C146:G159_B B 146 ? B 159 ? 19 1 1 A C 47 1_555 A G 58 1_555 0.254 -0.265 0.094 -1.455 -7.792 -0.439 24 B_C147:G158_B B 147 ? B 158 ? 19 1 1 A U 55 1_555 A C 56 1_555 7.104 1.056 -1.409 20.683 -13.995 -1.112 25 B_U155:C156_B B 155 ? B 156 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 21 1_555 A G 39 1_555 A C 22 1_555 A G 38 1_555 0.136 -1.578 3.434 2.137 15.478 32.475 -4.656 0.069 2.458 25.891 -3.575 35.946 1 BB_C121C122:G138G139_BB B 121 ? B 139 ? B 122 ? B 138 ? 1 A C 22 1_555 A G 38 1_555 A G 1 1_555 A U 37 1_555 2.068 -3.244 3.756 0.175 3.219 7.526 -31.295 -14.025 2.223 23.178 -1.256 8.186 2 BB_C122G101:U137G138_BB B 122 ? B 138 ? B 101 ? B 137 ? 1 A G 1 1_555 A U 37 1_555 A G 2 1_555 A C 36 1_555 -0.632 -1.903 3.542 0.617 5.673 41.203 -3.308 0.959 3.254 8.015 -0.872 41.579 3 BB_G101G102:C136U137_BB B 101 ? B 137 ? B 102 ? B 136 ? 1 A G 2 1_555 A C 36 1_555 A C 3 1_555 A G 35 1_555 -0.115 -1.670 3.086 3.127 0.423 30.192 -3.269 0.808 3.035 0.810 -5.983 30.353 4 BB_G102C103:G135C136_BB B 102 ? B 136 ? B 103 ? B 135 ? 1 A C 3 1_555 A G 35 1_555 A C 4 1_555 A G 34 1_555 0.534 -1.558 3.463 -3.758 2.817 27.033 -3.997 -2.076 3.185 5.968 7.962 27.430 5 BB_C103C104:G134G135_BB B 103 ? B 135 ? B 104 ? B 134 ? 1 A C 4 1_555 A G 34 1_555 A G 5 1_555 A C 33 1_555 -0.364 -1.873 3.133 -4.064 12.809 30.822 -5.046 0.060 2.229 22.789 7.230 33.559 6 BB_C104G105:C133G134_BB B 104 ? B 134 ? B 105 ? B 133 ? 1 A G 5 1_555 A C 33 1_555 A G 6 1_555 A C 32 1_555 -0.386 -1.883 3.141 -1.170 8.146 29.555 -4.988 0.525 2.556 15.592 2.240 30.655 7 BB_G105G106:C132C133_BB B 105 ? B 133 ? B 106 ? B 132 ? 1 A G 6 1_555 A C 32 1_555 A C 7 1_555 A G 31 1_555 0.392 -1.309 3.015 4.692 3.089 37.502 -2.377 -0.054 2.928 4.772 -7.248 37.905 8 BB_G106C107:G131C132_BB B 106 ? B 132 ? B 107 ? B 131 ? 1 A G 11 1_555 A C 72 1_555 A U 12 1_555 A A 71 1_555 -0.632 -1.491 3.221 3.003 9.185 34.456 -3.650 1.429 2.685 15.140 -4.950 35.746 9 BB_G111U112:A171C172_BB B 111 ? B 172 ? B 112 ? B 171 ? 1 A U 12 1_555 A A 71 1_555 A C 13 1_555 A G 70 1_555 0.321 -1.515 3.050 -2.648 4.076 32.581 -3.299 -0.973 2.811 7.215 4.688 32.932 10 BB_U112C113:G170A171_BB B 112 ? B 171 ? B 113 ? B 170 ? 1 A C 13 1_555 A G 70 1_555 A C 14 1_555 A G 69 1_555 -0.231 -2.175 3.283 0.153 3.337 26.888 -5.456 0.530 2.994 7.141 -0.328 27.091 11 BB_C113C114:G169G170_BB B 113 ? B 170 ? B 114 ? B 169 ? 1 A C 14 1_555 A G 69 1_555 A C 15 1_555 A G 68 1_555 0.042 -1.444 3.347 -1.024 1.712 33.925 -2.748 -0.237 3.270 2.931 1.753 33.982 12 BB_C114C115:G168G169_BB B 114 ? B 169 ? B 115 ? B 168 ? 1 A C 15 1_555 A G 68 1_555 A A 16 1_555 A U 67 1_555 1.082 -1.428 3.361 2.215 -3.009 28.949 -2.138 -1.636 3.559 -5.988 -4.407 29.184 13 BB_C115A116:U167G168_BB B 115 ? B 168 ? B 116 ? B 167 ? 1 A A 16 1_555 A U 67 1_555 A G 17 1_555 A C 30 1_555 0.859 -2.210 2.687 -4.794 5.593 38.775 -3.777 -1.703 2.241 8.332 7.142 39.442 14 BB_A116G117:C130U167_BB B 116 ? B 167 ? B 117 ? B 130 ? 1 A G 17 1_555 A C 30 1_555 A C 18 1_555 A G 29 1_555 0.506 -1.411 3.324 4.581 1.670 39.021 -2.299 -0.199 3.300 2.488 -6.825 39.313 15 BB_G117C118:G129C130_BB B 117 ? B 130 ? B 118 ? B 129 ? 1 A C 18 1_555 A G 29 1_555 A C 19 1_555 A G 28 1_555 -0.434 -1.444 3.535 -3.442 5.642 34.280 -3.309 0.175 3.290 9.463 5.773 34.893 16 BB_C118C119:G128G129_BB B 118 ? B 129 ? B 119 ? B 128 ? 1 A C 19 1_555 A G 28 1_555 A U 20 1_555 A G 25 1_555 -1.387 -0.440 2.654 7.680 -2.199 92.971 -0.270 1.068 2.568 -1.514 -5.287 93.235 17 BB_C119U120:G125G128_BB B 119 ? B 128 ? B 120 ? B 125 ? 1 A A 43 1_555 A G 62 1_555 A C 44 1_555 A G 61 1_555 0.835 -0.657 2.770 -5.792 6.816 34.900 -1.848 -2.018 2.437 11.140 9.467 35.993 18 BB_A143C144:G161G162_BB B 143 ? B 162 ? B 144 ? B 161 ? 1 A C 44 1_555 A G 61 1_555 A A 45 1_555 A U 60 1_555 -0.336 -1.511 3.319 -5.359 16.324 29.790 -4.907 -0.199 2.243 28.924 9.496 34.292 19 BB_C144A145:U160G161_BB B 144 ? B 161 ? B 145 ? B 160 ? 1 A A 45 1_555 A U 60 1_555 A C 46 1_555 A G 59 1_555 -0.029 -1.237 3.156 -1.741 0.897 33.719 -2.269 -0.220 3.121 1.545 2.999 33.774 20 BB_A145C146:G159U160_BB B 145 ? B 160 ? B 146 ? B 159 ? 1 A C 46 1_555 A G 59 1_555 A C 47 1_555 A G 58 1_555 -0.010 -1.691 3.512 -2.028 1.262 32.110 -3.289 -0.367 3.439 2.277 3.661 32.197 21 BB_C146C147:G158G159_BB B 146 ? B 159 ? B 147 ? B 158 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 401 401 MG MG B . D 3 MG 1 402 402 MG MG B . E 3 MG 1 403 403 MG MG B . F 3 MG 1 404 404 MG MG B . G 3 MG 1 405 405 MG MG B . H 3 MG 1 406 407 MG MG B . I 3 MG 1 407 408 MG MG B . J 3 MG 1 408 409 MG MG B . K 3 MG 1 409 411 MG MG B . L 3 MG 1 410 412 MG MG B . M 3 MG 1 411 413 MG MG B . N 3 MG 1 412 414 MG MG B . O 3 MG 1 413 415 MG MG B . P 3 MG 1 101 406 MG MG A . Q 3 MG 1 102 410 MG MG A . R 3 MG 1 103 416 MG MG A . S 4 HOH 1 501 1 HOH HOH B . S 4 HOH 2 502 2 HOH HOH B . S 4 HOH 3 503 3 HOH HOH B . S 4 HOH 4 504 4 HOH HOH B . S 4 HOH 5 505 5 HOH HOH B . S 4 HOH 6 506 6 HOH HOH B . S 4 HOH 7 507 37 HOH HOH B . S 4 HOH 8 508 39 HOH HOH B . S 4 HOH 9 509 40 HOH HOH B . S 4 HOH 10 510 60 HOH HOH B . S 4 HOH 11 511 63 HOH HOH B . S 4 HOH 12 512 64 HOH HOH B . S 4 HOH 13 513 65 HOH HOH B . S 4 HOH 14 514 67 HOH HOH B . S 4 HOH 15 515 68 HOH HOH B . S 4 HOH 16 516 69 HOH HOH B . S 4 HOH 17 517 71 HOH HOH B . S 4 HOH 18 518 81 HOH HOH B . S 4 HOH 19 519 85 HOH HOH B . S 4 HOH 20 520 86 HOH HOH B . T 4 HOH 1 201 7 HOH HOH A . T 4 HOH 2 202 8 HOH HOH A . T 4 HOH 3 203 9 HOH HOH A . T 4 HOH 4 204 10 HOH HOH A . T 4 HOH 5 205 11 HOH HOH A . T 4 HOH 6 206 12 HOH HOH A . T 4 HOH 7 207 13 HOH HOH A . T 4 HOH 8 208 14 HOH HOH A . T 4 HOH 9 209 15 HOH HOH A . T 4 HOH 10 210 16 HOH HOH A . T 4 HOH 11 211 17 HOH HOH A . T 4 HOH 12 212 18 HOH HOH A . T 4 HOH 13 213 19 HOH HOH A . T 4 HOH 14 214 20 HOH HOH A . T 4 HOH 15 215 21 HOH HOH A . T 4 HOH 16 216 22 HOH HOH A . T 4 HOH 17 217 23 HOH HOH A . T 4 HOH 18 218 24 HOH HOH A . T 4 HOH 19 219 25 HOH HOH A . T 4 HOH 20 220 26 HOH HOH A . T 4 HOH 21 221 27 HOH HOH A . T 4 HOH 22 222 28 HOH HOH A . T 4 HOH 23 223 29 HOH HOH A . T 4 HOH 24 224 30 HOH HOH A . T 4 HOH 25 225 31 HOH HOH A . T 4 HOH 26 226 32 HOH HOH A . T 4 HOH 27 227 33 HOH HOH A . T 4 HOH 28 228 34 HOH HOH A . T 4 HOH 29 229 35 HOH HOH A . T 4 HOH 30 230 38 HOH HOH A . T 4 HOH 31 231 41 HOH HOH A . T 4 HOH 32 232 42 HOH HOH A . T 4 HOH 33 233 43 HOH HOH A . T 4 HOH 34 234 44 HOH HOH A . T 4 HOH 35 235 45 HOH HOH A . T 4 HOH 36 236 46 HOH HOH A . T 4 HOH 37 237 47 HOH HOH A . T 4 HOH 38 238 48 HOH HOH A . T 4 HOH 39 239 49 HOH HOH A . T 4 HOH 40 240 50 HOH HOH A . T 4 HOH 41 241 51 HOH HOH A . T 4 HOH 42 242 52 HOH HOH A . T 4 HOH 43 243 53 HOH HOH A . T 4 HOH 44 244 54 HOH HOH A . T 4 HOH 45 245 55 HOH HOH A . T 4 HOH 46 246 56 HOH HOH A . T 4 HOH 47 247 57 HOH HOH A . T 4 HOH 48 248 58 HOH HOH A . T 4 HOH 49 249 59 HOH HOH A . T 4 HOH 50 250 61 HOH HOH A . T 4 HOH 51 251 62 HOH HOH A . T 4 HOH 52 252 66 HOH HOH A . T 4 HOH 53 253 72 HOH HOH A . T 4 HOH 54 254 74 HOH HOH A . T 4 HOH 55 255 75 HOH HOH A . T 4 HOH 56 256 76 HOH HOH A . T 4 HOH 57 257 77 HOH HOH A . T 4 HOH 58 258 78 HOH HOH A . T 4 HOH 59 259 79 HOH HOH A . T 4 HOH 60 260 80 HOH HOH A . T 4 HOH 61 261 82 HOH HOH A . T 4 HOH 62 262 83 HOH HOH A . T 4 HOH 63 263 84 HOH HOH A . #