HEADER HYDROLASE/HYDROLASE INHIBITOR 06-MAR-14 4PRY TITLE CASPASE-8 SPECIFIC UNNATURAL AMINO ACID PEPTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CASP-3, APOPAIN, CYSTEINE PROTEASE CPP32, CPP-32, PROTEIN COMPND 5 YAMA, SREBP CLEAVAGE ACTIVITY 1, SCA-1, CASPASE-3 SUBUNIT P17, COMPND 6 CASPASE-3 SUBUNIT P12; COMPND 7 EC: 3.4.22.56; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: AC-LETD-CHO; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP3, CASPASE-3 CPP32, CPP32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.W.WOLAN,G.E.GONZALEZ-PAEZ,C.J.VICKERS REVDAT 3 06-DEC-23 4PRY 1 REMARK REVDAT 2 20-SEP-23 4PRY 1 SEQADV LINK REVDAT 1 21-JAN-15 4PRY 0 JRNL AUTH C.J.VICKERS,G.E.GONZALEZ-PAEZ,K.M.LITWIN,J.C.UMOTOY, JRNL AUTH 2 E.A.COUTSIAS,D.W.WOLAN JRNL TITL SELECTIVE INHIBITION OF INITIATOR VERSUS EXECUTIONER JRNL TITL 2 CASPASES USING SMALL PEPTIDES CONTAINING UNNATURAL AMINO JRNL TITL 3 ACIDS. JRNL REF ACS CHEM.BIOL. V. 9 2194 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 25079698 JRNL DOI 10.1021/CB5004256 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7270 - 3.7744 0.90 2579 139 0.1592 0.1769 REMARK 3 2 3.7744 - 2.9971 0.97 2669 144 0.1481 0.1651 REMARK 3 3 2.9971 - 2.6187 0.99 2703 149 0.1569 0.1831 REMARK 3 4 2.6187 - 2.3794 1.00 2679 146 0.1513 0.1931 REMARK 3 5 2.3794 - 2.2089 1.00 2688 158 0.1418 0.1934 REMARK 3 6 2.2089 - 2.0788 1.00 2682 135 0.1483 0.1881 REMARK 3 7 2.0788 - 1.9747 1.00 2709 115 0.1482 0.1724 REMARK 3 8 1.9747 - 1.8887 1.00 2688 142 0.1551 0.2053 REMARK 3 9 1.8887 - 1.8161 1.00 2650 127 0.1619 0.2149 REMARK 3 10 1.8161 - 1.7534 1.00 2691 153 0.1774 0.2286 REMARK 3 11 1.7534 - 1.6986 0.99 2644 147 0.1911 0.2382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2106 REMARK 3 ANGLE : 1.388 2846 REMARK 3 CHIRALITY : 0.078 311 REMARK 3 PLANARITY : 0.007 366 REMARK 3 DIHEDRAL : 12.859 799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0923 22.4516 62.2967 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.1174 REMARK 3 T33: 0.1248 T12: 0.0077 REMARK 3 T13: 0.0188 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.4603 L22: 2.1739 REMARK 3 L33: 1.3768 L12: 0.0688 REMARK 3 L13: 0.2679 L23: -0.7521 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: -0.1434 S13: -0.1732 REMARK 3 S21: 0.1342 S22: 0.0193 S23: 0.0922 REMARK 3 S31: -0.0920 S32: -0.0721 S33: -0.0818 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9248 14.7410 62.6291 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1485 REMARK 3 T33: 0.1479 T12: -0.0003 REMARK 3 T13: 0.0280 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.5757 L22: 7.7573 REMARK 3 L33: 1.9131 L12: -0.1391 REMARK 3 L13: 0.2464 L23: -2.4285 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.1004 S13: -0.2941 REMARK 3 S21: -0.0101 S22: 0.0480 S23: 0.2322 REMARK 3 S31: 0.1494 S32: -0.1099 S33: -0.0680 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5629 14.4431 55.3847 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1140 REMARK 3 T33: 0.1529 T12: 0.0049 REMARK 3 T13: -0.0148 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.4990 L22: 0.8627 REMARK 3 L33: 0.5758 L12: 0.0168 REMARK 3 L13: -0.1727 L23: -0.1641 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.1021 S13: -0.3886 REMARK 3 S21: -0.0368 S22: -0.0299 S23: 0.1088 REMARK 3 S31: 0.1179 S32: -0.0409 S33: -0.0581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3598 20.4779 41.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1644 REMARK 3 T33: 0.0966 T12: 0.0187 REMARK 3 T13: -0.0027 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.6715 L22: 1.4567 REMARK 3 L33: 1.9151 L12: 0.0453 REMARK 3 L13: 0.4345 L23: -0.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.3115 S13: 0.0291 REMARK 3 S21: -0.3326 S22: -0.0043 S23: 0.0994 REMARK 3 S31: -0.0406 S32: -0.1555 S33: 0.0147 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7533 24.4417 61.7535 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1240 REMARK 3 T33: 0.0652 T12: -0.0174 REMARK 3 T13: -0.0109 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.9041 L22: 3.5466 REMARK 3 L33: 1.2552 L12: -0.6668 REMARK 3 L13: 0.0756 L23: -0.2769 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.1499 S13: -0.0493 REMARK 3 S21: 0.1372 S22: -0.0073 S23: 0.0049 REMARK 3 S31: -0.0992 S32: 0.0394 S33: -0.0272 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2754 14.4261 64.3675 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.1253 REMARK 3 T33: 0.0953 T12: -0.0090 REMARK 3 T13: -0.0179 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.6883 L22: 1.9220 REMARK 3 L33: 4.3231 L12: -2.3265 REMARK 3 L13: 4.0113 L23: -2.4179 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.0004 S13: -0.0458 REMARK 3 S21: 0.0745 S22: -0.0219 S23: 0.0545 REMARK 3 S31: 0.0599 S32: -0.0380 S33: -0.0261 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4104 33.4199 49.9836 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1347 REMARK 3 T33: 0.0978 T12: 0.0271 REMARK 3 T13: 0.0326 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 4.7378 L22: 2.7219 REMARK 3 L33: 6.7023 L12: -0.9029 REMARK 3 L13: -0.8310 L23: 3.8004 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.1326 S13: 0.3054 REMARK 3 S21: -0.0688 S22: 0.0936 S23: 0.1369 REMARK 3 S31: -0.5656 S32: -0.1020 S33: -0.1445 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6314 10.7998 70.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.3983 T22: 0.2682 REMARK 3 T33: 0.3108 T12: 0.0038 REMARK 3 T13: -0.1172 T23: 0.1711 REMARK 3 L TENSOR REMARK 3 L11: 2.4963 L22: 5.6412 REMARK 3 L33: 5.9951 L12: 3.7521 REMARK 3 L13: -3.8675 L23: -5.8149 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: 0.1319 S13: 0.4646 REMARK 3 S21: -0.3581 S22: -0.4858 S23: -0.4301 REMARK 3 S31: -0.9883 S32: 0.4422 S33: 0.6632 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88560 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 4JJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 5.5, 12% REMARK 280 PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.52050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.21650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.06350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.52050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.21650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.06350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.52050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.21650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.06350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.52050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.21650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.06350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 ILE A 13 REMARK 465 LYS A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 LYS A 19 REMARK 465 ILE A 20 REMARK 465 ILE A 21 REMARK 465 HIS A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLU A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 175 REMARK 465 SER A 176 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ASP A 180 CG OD1 OD2 REMARK 470 MET A 182 CG SD CE REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LEU A 279 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 163 C ASA B 405 2.05 REMARK 500 O VAL A 178 O HOH A 673 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 75 O HOH A 673 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 268 CG - SD - CE ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 120 -178.27 -171.30 REMARK 500 LYS A 229 -33.04 -132.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JJ7 RELATED DB: PDB REMARK 900 CASPASE-8 SPECIFIC UNNATURAL AMINO ACID PEPTIDES REMARK 900 RELATED ID: 4JJ8 RELATED DB: PDB REMARK 900 CASPASE-7 SPECIFIC UNNATURAL AMINO ACID PEPTIDES REMARK 900 RELATED ID: 4JJE RELATED DB: PDB REMARK 900 CASPASE-3 SPECIFIC UNNATURAL AMINO ACID PEPTIDES REMARK 900 RELATED ID: 4PRZ RELATED DB: PDB REMARK 900 RELATED ID: 4PS0 RELATED DB: PDB REMARK 900 RELATED ID: 4PS1 RELATED DB: PDB DBREF 4PRY A 1 277 UNP P42574 CASP3_HUMAN 1 277 DBREF 4PRY B 401 405 PDB 4PRY 4PRY 401 405 SEQADV 4PRY GLN A 278 UNP P42574 EXPRESSION TAG SEQADV 4PRY LEU A 279 UNP P42574 EXPRESSION TAG SEQADV 4PRY HIS A 280 UNP P42574 EXPRESSION TAG SEQADV 4PRY HIS A 281 UNP P42574 EXPRESSION TAG SEQADV 4PRY HIS A 282 UNP P42574 EXPRESSION TAG SEQADV 4PRY HIS A 283 UNP P42574 EXPRESSION TAG SEQADV 4PRY HIS A 284 UNP P42574 EXPRESSION TAG SEQADV 4PRY HIS A 285 UNP P42574 EXPRESSION TAG SEQRES 1 A 285 MET GLU ASN THR GLU ASN SER VAL ASP SER LYS SER ILE SEQRES 2 A 285 LYS ASN LEU GLU PRO LYS ILE ILE HIS GLY SER GLU SER SEQRES 3 A 285 MET ASP SER GLY ILE SER LEU ASP ASN SER TYR LYS MET SEQRES 4 A 285 ASP TYR PRO GLU MET GLY LEU CYS ILE ILE ILE ASN ASN SEQRES 5 A 285 LYS ASN PHE HIS LYS SER THR GLY MET THR SER ARG SER SEQRES 6 A 285 GLY THR ASP VAL ASP ALA ALA ASN LEU ARG GLU THR PHE SEQRES 7 A 285 ARG ASN LEU LYS TYR GLU VAL ARG ASN LYS ASN ASP LEU SEQRES 8 A 285 THR ARG GLU GLU ILE VAL GLU LEU MET ARG ASP VAL SER SEQRES 9 A 285 LYS GLU ASP HIS SER LYS ARG SER SER PHE VAL CYS VAL SEQRES 10 A 285 LEU LEU SER HIS GLY GLU GLU GLY ILE ILE PHE GLY THR SEQRES 11 A 285 ASN GLY PRO VAL ASP LEU LYS LYS ILE THR ASN PHE PHE SEQRES 12 A 285 ARG GLY ASP ARG CYS ARG SER LEU THR GLY LYS PRO LYS SEQRES 13 A 285 LEU PHE ILE ILE GLN ALA CYS ARG GLY THR GLU LEU ASP SEQRES 14 A 285 CYS GLY ILE GLU THR ASP SER GLY VAL ASP ASP ASP MET SEQRES 15 A 285 ALA CYS HIS LYS ILE PRO VAL GLU ALA ASP PHE LEU TYR SEQRES 16 A 285 ALA TYR SER THR ALA PRO GLY TYR TYR SER TRP ARG ASN SEQRES 17 A 285 SER LYS ASP GLY SER TRP PHE ILE GLN SER LEU CYS ALA SEQRES 18 A 285 MET LEU LYS GLN TYR ALA ASP LYS LEU GLU PHE MET HIS SEQRES 19 A 285 ILE LEU THR ARG VAL ASN ARG LYS VAL ALA THR GLU PHE SEQRES 20 A 285 GLU SER PHE SER PHE ASP ALA THR PHE HIS ALA LYS LYS SEQRES 21 A 285 GLN ILE PRO CYS ILE VAL SER MET LEU THR LYS GLU LEU SEQRES 22 A 285 TYR PHE TYR HIS GLN LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 5 ACE LEU GLU THR ASA MODRES 4PRY ASA B 405 ASP ASPARTIC ALDEHYDE HET ACE B 401 3 HET ASA B 405 8 HETNAM ACE ACETYL GROUP HETNAM ASA ASPARTIC ALDEHYDE FORMUL 2 ACE C2 H4 O FORMUL 2 ASA C4 H7 N O3 FORMUL 3 HOH *192(H2 O) HELIX 1 1 HIS A 56 GLY A 60 5 5 HELIX 2 2 GLY A 66 LEU A 81 1 16 HELIX 3 3 THR A 92 LYS A 105 1 14 HELIX 4 4 LEU A 136 PHE A 142 1 7 HELIX 5 5 CYS A 148 THR A 152 5 5 HELIX 6 6 TRP A 214 ALA A 227 1 14 HELIX 7 7 GLU A 231 PHE A 247 1 17 HELIX 8 8 ASP A 253 HIS A 257 5 5 SHEET 1 A 6 GLU A 84 ASN A 89 0 SHEET 2 A 6 GLU A 43 ASN A 51 1 N ASN A 51 O LYS A 88 SHEET 3 A 6 ARG A 111 LEU A 119 1 O VAL A 117 N ILE A 48 SHEET 4 A 6 LYS A 156 GLN A 161 1 O LEU A 157 N PHE A 114 SHEET 5 A 6 PHE A 193 TYR A 197 1 O ALA A 196 N PHE A 158 SHEET 6 A 6 CYS A 264 SER A 267 -1 O VAL A 266 N TYR A 195 SHEET 1 B 3 GLY A 122 GLU A 123 0 SHEET 2 B 3 ILE A 126 GLY A 129 -1 O ILE A 126 N GLU A 123 SHEET 3 B 3 GLY A 132 ASP A 135 -1 O GLY A 132 N GLY A 129 SHEET 1 C 3 GLY A 212 SER A 213 0 SHEET 2 C 3 TRP A 206 ASN A 208 -1 N ASN A 208 O GLY A 212 SHEET 3 C 3 GLU B 403 THR B 404 -1 O GLU B 403 N ARG A 207 LINK C ACE B 401 N LEU B 402 1555 1555 1.32 LINK C THR B 404 N ASA B 405 1555 1555 1.32 CRYST1 69.041 84.433 96.127 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010403 0.00000