HEADER TRANSLATION, RNA BINDING PROTEIN 22-MAR-14 4PX9 TITLE DEAD-BOX RNA HELICASE DDX3X DOMAIN 1 WITH N-TERMINAL ATP-BINDING LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX3X; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 135-407; COMPND 5 SYNONYM: DEAD BOX PROTEIN 3, X-CHROMOSOMAL, DEAD BOX, X ISOFORM, COMPND 6 HELICASE-LIKE PROTEIN 2, HLP2; COMPND 7 EC: 3.6.4.13; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DBX, DDX3, DDX3X; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLE231 KEYWDS DEAD-BOX HELICASE, HYDROLASE, TRANSLATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.B.EPLING,C.R.GRACE,B.R.LOWE,J.F.PARTRIDGE,E.J.ENEMARK REVDAT 4 20-SEP-23 4PX9 1 REMARK SEQADV REVDAT 3 22-NOV-17 4PX9 1 REMARK REVDAT 2 29-APR-15 4PX9 1 JRNL REVDAT 1 11-MAR-15 4PX9 0 JRNL AUTH L.B.EPLING,C.R.GRACE,B.R.LOWE,J.F.PARTRIDGE,E.J.ENEMARK JRNL TITL CANCER-ASSOCIATED MUTANTS OF RNA HELICASE DDX3X ARE JRNL TITL 2 DEFECTIVE IN RNA-STIMULATED ATP HYDROLYSIS. JRNL REF J.MOL.BIOL. V. 427 1779 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 25724843 JRNL DOI 10.1016/J.JMB.2015.02.015 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1794086.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1755 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3061 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6265 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.76000 REMARK 3 B22 (A**2) : 12.76000 REMARK 3 B33 (A**2) : -25.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 49.16 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : ADP.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : ADP.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4PX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34163 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2I4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES 7.6; 7% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K, PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.46267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.92533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 116 REMARK 465 GLY A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 SER A 126 REMARK 465 SER A 127 REMARK 465 GLY A 128 REMARK 465 LEU A 129 REMARK 465 VAL A 130 REMARK 465 PRO A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 SER A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 154 REMARK 465 ASN A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 ILE A 158 REMARK 465 ASN A 159 REMARK 465 PHE A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 MET B 116 REMARK 465 GLY B 117 REMARK 465 SER B 118 REMARK 465 SER B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 SER B 126 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 LEU B 129 REMARK 465 VAL B 130 REMARK 465 PRO B 131 REMARK 465 ARG B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 SER B 152 REMARK 465 GLY B 153 REMARK 465 GLY B 154 REMARK 465 ASN B 155 REMARK 465 THR B 156 REMARK 465 GLY B 157 REMARK 465 ILE B 158 REMARK 465 ASN B 159 REMARK 465 PHE B 160 REMARK 465 GLU B 161 REMARK 465 LYS B 162 REMARK 465 MET C 116 REMARK 465 GLY C 117 REMARK 465 SER C 118 REMARK 465 SER C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 SER C 126 REMARK 465 SER C 127 REMARK 465 GLY C 128 REMARK 465 LEU C 129 REMARK 465 VAL C 130 REMARK 465 PRO C 131 REMARK 465 ARG C 132 REMARK 465 GLY C 133 REMARK 465 SER C 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 LEU A 251 CG CD1 CD2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 LEU B 251 CG CD1 CD2 REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 160 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 161 CG CD OE1 OE2 REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 TYR C 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 164 CG OD1 OD2 REMARK 470 ASP C 165 CG OD1 OD2 REMARK 470 GLU C 249 CG CD OE1 OE2 REMARK 470 LEU C 251 CG CD1 CD2 REMARK 470 ARG C 252 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 142 170.19 -56.90 REMARK 500 ASP A 164 -150.76 -118.46 REMARK 500 ASP A 165 47.97 27.44 REMARK 500 ASN A 174 49.49 36.18 REMARK 500 ARG A 199 45.17 71.31 REMARK 500 ALA A 250 -71.83 -69.40 REMARK 500 MET A 254 -6.88 -177.40 REMARK 500 ASP A 368 -145.16 -140.62 REMARK 500 PHE A 385 51.46 -142.93 REMARK 500 GLU A 399 54.15 36.63 REMARK 500 LEU B 150 -74.10 -74.19 REMARK 500 ASP B 164 -137.93 -87.46 REMARK 500 ASP B 165 48.51 32.63 REMARK 500 ASN B 174 49.44 36.65 REMARK 500 ARG B 199 44.87 71.64 REMARK 500 ALA B 250 -72.00 -69.02 REMARK 500 MET B 254 -6.54 -177.47 REMARK 500 ASP B 368 -145.57 -140.18 REMARK 500 PHE B 385 51.98 -142.96 REMARK 500 GLU B 399 54.32 36.67 REMARK 500 PHE C 151 58.59 -109.89 REMARK 500 SER C 152 50.62 -66.45 REMARK 500 ASN C 155 -2.55 76.56 REMARK 500 ASN C 159 65.72 -69.52 REMARK 500 PHE C 160 10.72 -68.01 REMARK 500 TYR C 163 -166.95 -127.92 REMARK 500 ASP C 164 -7.57 89.62 REMARK 500 ASP C 165 61.19 -153.32 REMARK 500 ASN C 174 49.69 36.07 REMARK 500 ARG C 199 45.11 71.39 REMARK 500 ALA C 250 -71.52 -69.46 REMARK 500 MET C 254 -6.87 -177.22 REMARK 500 ASP C 368 -145.47 -140.32 REMARK 500 PHE C 385 51.85 -142.42 REMARK 500 GLU C 399 53.57 36.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PXA RELATED DB: PDB REMARK 900 DDX3X D1-D2 D354V DBREF 4PX9 A 135 407 UNP O00571 DDX3X_HUMAN 135 407 DBREF 4PX9 B 135 407 UNP O00571 DDX3X_HUMAN 135 407 DBREF 4PX9 C 135 407 UNP O00571 DDX3X_HUMAN 135 407 SEQADV 4PX9 MET A 116 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY A 117 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER A 118 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER A 119 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS A 120 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS A 121 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS A 122 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS A 123 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS A 124 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS A 125 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER A 126 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER A 127 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY A 128 UNP O00571 EXPRESSION TAG SEQADV 4PX9 LEU A 129 UNP O00571 EXPRESSION TAG SEQADV 4PX9 VAL A 130 UNP O00571 EXPRESSION TAG SEQADV 4PX9 PRO A 131 UNP O00571 EXPRESSION TAG SEQADV 4PX9 ARG A 132 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY A 133 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER A 134 UNP O00571 EXPRESSION TAG SEQADV 4PX9 MET B 116 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY B 117 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER B 118 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER B 119 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS B 120 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS B 121 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS B 122 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS B 123 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS B 124 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS B 125 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER B 126 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER B 127 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY B 128 UNP O00571 EXPRESSION TAG SEQADV 4PX9 LEU B 129 UNP O00571 EXPRESSION TAG SEQADV 4PX9 VAL B 130 UNP O00571 EXPRESSION TAG SEQADV 4PX9 PRO B 131 UNP O00571 EXPRESSION TAG SEQADV 4PX9 ARG B 132 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY B 133 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER B 134 UNP O00571 EXPRESSION TAG SEQADV 4PX9 MET C 116 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY C 117 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER C 118 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER C 119 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS C 120 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS C 121 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS C 122 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS C 123 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS C 124 UNP O00571 EXPRESSION TAG SEQADV 4PX9 HIS C 125 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER C 126 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER C 127 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY C 128 UNP O00571 EXPRESSION TAG SEQADV 4PX9 LEU C 129 UNP O00571 EXPRESSION TAG SEQADV 4PX9 VAL C 130 UNP O00571 EXPRESSION TAG SEQADV 4PX9 PRO C 131 UNP O00571 EXPRESSION TAG SEQADV 4PX9 ARG C 132 UNP O00571 EXPRESSION TAG SEQADV 4PX9 GLY C 133 UNP O00571 EXPRESSION TAG SEQADV 4PX9 SER C 134 UNP O00571 EXPRESSION TAG SEQRES 1 A 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 292 LEU VAL PRO ARG GLY SER ASP TRP SER LYS PRO LEU PRO SEQRES 3 A 292 PRO SER GLU ARG LEU GLU GLN GLU LEU PHE SER GLY GLY SEQRES 4 A 292 ASN THR GLY ILE ASN PHE GLU LYS TYR ASP ASP ILE PRO SEQRES 5 A 292 VAL GLU ALA THR GLY ASN ASN CYS PRO PRO HIS ILE GLU SEQRES 6 A 292 SER PHE SER ASP VAL GLU MET GLY GLU ILE ILE MET GLY SEQRES 7 A 292 ASN ILE GLU LEU THR ARG TYR THR ARG PRO THR PRO VAL SEQRES 8 A 292 GLN LYS HIS ALA ILE PRO ILE ILE LYS GLU LYS ARG ASP SEQRES 9 A 292 LEU MET ALA CYS ALA GLN THR GLY SER GLY LYS THR ALA SEQRES 10 A 292 ALA PHE LEU LEU PRO ILE LEU SER GLN ILE TYR SER ASP SEQRES 11 A 292 GLY PRO GLY GLU ALA LEU ARG ALA MET LYS GLU ASN GLY SEQRES 12 A 292 ARG TYR GLY ARG ARG LYS GLN TYR PRO ILE SER LEU VAL SEQRES 13 A 292 LEU ALA PRO THR ARG GLU LEU ALA VAL GLN ILE TYR GLU SEQRES 14 A 292 GLU ALA ARG LYS PHE SER TYR ARG SER ARG VAL ARG PRO SEQRES 15 A 292 CYS VAL VAL TYR GLY GLY ALA ASP ILE GLY GLN GLN ILE SEQRES 16 A 292 ARG ASP LEU GLU ARG GLY CYS HIS LEU LEU VAL ALA THR SEQRES 17 A 292 PRO GLY ARG LEU VAL ASP MET MET GLU ARG GLY LYS ILE SEQRES 18 A 292 GLY LEU ASP PHE CYS LYS TYR LEU VAL LEU ASP GLU ALA SEQRES 19 A 292 ASP ARG MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG SEQRES 20 A 292 ARG ILE VAL GLU GLN ASP THR MET PRO PRO LYS GLY VAL SEQRES 21 A 292 ARG HIS THR MET MET PHE SER ALA THR PHE PRO LYS GLU SEQRES 22 A 292 ILE GLN MET LEU ALA ARG ASP PHE LEU ASP GLU TYR ILE SEQRES 23 A 292 PHE LEU ALA VAL GLY ARG SEQRES 1 B 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 292 LEU VAL PRO ARG GLY SER ASP TRP SER LYS PRO LEU PRO SEQRES 3 B 292 PRO SER GLU ARG LEU GLU GLN GLU LEU PHE SER GLY GLY SEQRES 4 B 292 ASN THR GLY ILE ASN PHE GLU LYS TYR ASP ASP ILE PRO SEQRES 5 B 292 VAL GLU ALA THR GLY ASN ASN CYS PRO PRO HIS ILE GLU SEQRES 6 B 292 SER PHE SER ASP VAL GLU MET GLY GLU ILE ILE MET GLY SEQRES 7 B 292 ASN ILE GLU LEU THR ARG TYR THR ARG PRO THR PRO VAL SEQRES 8 B 292 GLN LYS HIS ALA ILE PRO ILE ILE LYS GLU LYS ARG ASP SEQRES 9 B 292 LEU MET ALA CYS ALA GLN THR GLY SER GLY LYS THR ALA SEQRES 10 B 292 ALA PHE LEU LEU PRO ILE LEU SER GLN ILE TYR SER ASP SEQRES 11 B 292 GLY PRO GLY GLU ALA LEU ARG ALA MET LYS GLU ASN GLY SEQRES 12 B 292 ARG TYR GLY ARG ARG LYS GLN TYR PRO ILE SER LEU VAL SEQRES 13 B 292 LEU ALA PRO THR ARG GLU LEU ALA VAL GLN ILE TYR GLU SEQRES 14 B 292 GLU ALA ARG LYS PHE SER TYR ARG SER ARG VAL ARG PRO SEQRES 15 B 292 CYS VAL VAL TYR GLY GLY ALA ASP ILE GLY GLN GLN ILE SEQRES 16 B 292 ARG ASP LEU GLU ARG GLY CYS HIS LEU LEU VAL ALA THR SEQRES 17 B 292 PRO GLY ARG LEU VAL ASP MET MET GLU ARG GLY LYS ILE SEQRES 18 B 292 GLY LEU ASP PHE CYS LYS TYR LEU VAL LEU ASP GLU ALA SEQRES 19 B 292 ASP ARG MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG SEQRES 20 B 292 ARG ILE VAL GLU GLN ASP THR MET PRO PRO LYS GLY VAL SEQRES 21 B 292 ARG HIS THR MET MET PHE SER ALA THR PHE PRO LYS GLU SEQRES 22 B 292 ILE GLN MET LEU ALA ARG ASP PHE LEU ASP GLU TYR ILE SEQRES 23 B 292 PHE LEU ALA VAL GLY ARG SEQRES 1 C 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 292 LEU VAL PRO ARG GLY SER ASP TRP SER LYS PRO LEU PRO SEQRES 3 C 292 PRO SER GLU ARG LEU GLU GLN GLU LEU PHE SER GLY GLY SEQRES 4 C 292 ASN THR GLY ILE ASN PHE GLU LYS TYR ASP ASP ILE PRO SEQRES 5 C 292 VAL GLU ALA THR GLY ASN ASN CYS PRO PRO HIS ILE GLU SEQRES 6 C 292 SER PHE SER ASP VAL GLU MET GLY GLU ILE ILE MET GLY SEQRES 7 C 292 ASN ILE GLU LEU THR ARG TYR THR ARG PRO THR PRO VAL SEQRES 8 C 292 GLN LYS HIS ALA ILE PRO ILE ILE LYS GLU LYS ARG ASP SEQRES 9 C 292 LEU MET ALA CYS ALA GLN THR GLY SER GLY LYS THR ALA SEQRES 10 C 292 ALA PHE LEU LEU PRO ILE LEU SER GLN ILE TYR SER ASP SEQRES 11 C 292 GLY PRO GLY GLU ALA LEU ARG ALA MET LYS GLU ASN GLY SEQRES 12 C 292 ARG TYR GLY ARG ARG LYS GLN TYR PRO ILE SER LEU VAL SEQRES 13 C 292 LEU ALA PRO THR ARG GLU LEU ALA VAL GLN ILE TYR GLU SEQRES 14 C 292 GLU ALA ARG LYS PHE SER TYR ARG SER ARG VAL ARG PRO SEQRES 15 C 292 CYS VAL VAL TYR GLY GLY ALA ASP ILE GLY GLN GLN ILE SEQRES 16 C 292 ARG ASP LEU GLU ARG GLY CYS HIS LEU LEU VAL ALA THR SEQRES 17 C 292 PRO GLY ARG LEU VAL ASP MET MET GLU ARG GLY LYS ILE SEQRES 18 C 292 GLY LEU ASP PHE CYS LYS TYR LEU VAL LEU ASP GLU ALA SEQRES 19 C 292 ASP ARG MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG SEQRES 20 C 292 ARG ILE VAL GLU GLN ASP THR MET PRO PRO LYS GLY VAL SEQRES 21 C 292 ARG HIS THR MET MET PHE SER ALA THR PHE PRO LYS GLU SEQRES 22 C 292 ILE GLN MET LEU ALA ARG ASP PHE LEU ASP GLU TYR ILE SEQRES 23 C 292 PHE LEU ALA VAL GLY ARG HET ADP A 601 27 HET ADP B 501 27 HET ADP C 501 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ADP 3(C10 H15 N5 O10 P2) HELIX 1 1 SER A 143 PHE A 151 1 9 HELIX 2 2 SER A 181 VAL A 185 5 5 HELIX 3 3 MET A 187 ARG A 199 1 13 HELIX 4 4 THR A 204 GLU A 216 1 13 HELIX 5 5 GLY A 229 GLY A 246 1 18 HELIX 6 6 PRO A 247 ALA A 253 1 7 HELIX 7 7 THR A 275 SER A 290 1 16 HELIX 8 8 ASP A 305 ARG A 315 1 11 HELIX 9 9 THR A 323 ARG A 333 1 11 HELIX 10 10 GLU A 348 MET A 355 1 8 HELIX 11 11 PHE A 357 GLU A 366 1 10 HELIX 12 12 PRO A 386 LEU A 397 1 12 HELIX 13 13 SER B 143 LEU B 150 1 8 HELIX 14 14 SER B 181 VAL B 185 5 5 HELIX 15 15 MET B 187 ARG B 199 1 13 HELIX 16 16 THR B 204 GLU B 216 1 13 HELIX 17 17 GLY B 229 GLY B 246 1 18 HELIX 18 18 PRO B 247 ALA B 253 1 7 HELIX 19 19 THR B 275 SER B 290 1 16 HELIX 20 20 ASP B 305 ARG B 315 1 11 HELIX 21 21 THR B 323 ARG B 333 1 11 HELIX 22 22 GLU B 348 MET B 355 1 8 HELIX 23 23 PHE B 357 GLN B 367 1 11 HELIX 24 24 PRO B 386 LEU B 397 1 12 HELIX 25 25 SER C 143 PHE C 151 1 9 HELIX 26 26 SER C 181 VAL C 185 5 5 HELIX 27 27 MET C 187 ARG C 199 1 13 HELIX 28 28 THR C 204 GLU C 216 1 13 HELIX 29 29 GLY C 229 GLY C 246 1 18 HELIX 30 30 PRO C 247 ALA C 253 1 7 HELIX 31 31 THR C 275 SER C 290 1 16 HELIX 32 32 ASP C 305 ARG C 315 1 11 HELIX 33 33 THR C 323 ARG C 333 1 11 HELIX 34 34 GLU C 348 MET C 355 1 8 HELIX 35 35 PHE C 357 GLU C 366 1 10 HELIX 36 36 PRO C 386 LEU C 397 1 12 SHEET 1 A 8 VAL A 168 THR A 171 0 SHEET 2 A 8 ILE A 401 VAL A 405 -1 O PHE A 402 N THR A 171 SHEET 3 A 8 LEU A 220 CYS A 223 1 N MET A 221 O LEU A 403 SHEET 4 A 8 HIS A 377 PHE A 381 1 O MET A 380 N LEU A 220 SHEET 5 A 8 TYR A 343 ASP A 347 1 N LEU A 344 O HIS A 377 SHEET 6 A 8 SER A 269 LEU A 272 1 N LEU A 270 O TYR A 343 SHEET 7 A 8 LEU A 319 ALA A 322 1 O LEU A 320 N VAL A 271 SHEET 8 A 8 PRO A 297 VAL A 300 1 N VAL A 300 O VAL A 321 SHEET 1 B 8 VAL B 168 THR B 171 0 SHEET 2 B 8 ILE B 401 VAL B 405 -1 O PHE B 402 N THR B 171 SHEET 3 B 8 LEU B 220 CYS B 223 1 N MET B 221 O LEU B 403 SHEET 4 B 8 HIS B 377 PHE B 381 1 O MET B 380 N LEU B 220 SHEET 5 B 8 TYR B 343 ASP B 347 1 N LEU B 344 O HIS B 377 SHEET 6 B 8 SER B 269 LEU B 272 1 N LEU B 270 O TYR B 343 SHEET 7 B 8 LEU B 319 ALA B 322 1 O LEU B 320 N VAL B 271 SHEET 8 B 8 PRO B 297 VAL B 300 1 N VAL B 300 O VAL B 321 SHEET 1 C 8 VAL C 168 THR C 171 0 SHEET 2 C 8 ILE C 401 VAL C 405 -1 O PHE C 402 N THR C 171 SHEET 3 C 8 LEU C 220 CYS C 223 1 N MET C 221 O LEU C 403 SHEET 4 C 8 HIS C 377 PHE C 381 1 O MET C 380 N ALA C 222 SHEET 5 C 8 TYR C 343 ASP C 347 1 N LEU C 346 O PHE C 381 SHEET 6 C 8 SER C 269 LEU C 272 1 N LEU C 270 O TYR C 343 SHEET 7 C 8 LEU C 319 ALA C 322 1 O LEU C 320 N VAL C 271 SHEET 8 C 8 PRO C 297 VAL C 300 1 N VAL C 300 O VAL C 321 SITE 1 AC1 8 TYR A 200 ARG A 202 GLN A 207 THR A 226 SITE 2 AC1 8 GLY A 227 GLY A 229 LYS A 230 THR A 231 SITE 1 AC2 9 TYR B 200 ARG B 202 GLN B 207 THR B 226 SITE 2 AC2 9 GLY B 227 SER B 228 GLY B 229 LYS B 230 SITE 3 AC2 9 THR B 231 SITE 1 AC3 11 THR C 156 ILE C 158 PHE C 182 TYR C 200 SITE 2 AC3 11 ARG C 202 GLN C 207 THR C 226 GLY C 227 SITE 3 AC3 11 GLY C 229 LYS C 230 THR C 231 CRYST1 75.637 75.637 121.388 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013221 0.007633 0.000000 0.00000 SCALE2 0.000000 0.015266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008238 0.00000