HEADER PROTON TRANSPORT 24-MAR-14 4PXK TITLE CRYSTAL STRUCTURE OF HALOARCULA MARISMORTUI BACTERIORHODOPSIN I D94N TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOARCULA MARISMORTUI; SOURCE 3 ORGANISM_TAXID: 272569; SOURCE 4 STRAIN: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809; SOURCE 5 GENE: BOP, RRNAC3161; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-HELICAL TRANSMEMBRANE PROTEIN, PROTON PUMP, COVALENTLY ATTACHED KEYWDS 2 RETINAL, MEMBRANE, PROTON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR V.SHEVCHENKO,I.GUSHCHIN,V.POLOVINKIN,V.GORDELIY REVDAT 3 20-SEP-23 4PXK 1 REMARK SEQADV LINK REVDAT 2 17-JUN-15 4PXK 1 HETATM REMARK REVDAT 1 17-DEC-14 4PXK 0 JRNL AUTH V.SHEVCHENKO,I.GUSHCHIN,V.POLOVINKIN,E.ROUND, JRNL AUTH 2 V.BORSHCHEVSKIY,P.UTROBIN,A.POPOV,T.BALANDIN,G.BULDT, JRNL AUTH 3 V.GORDELIY JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI-EXPRESSED HALOARCULA JRNL TITL 2 MARISMORTUI BACTERIORHODOPSIN I IN THE TRIMERIC FORM. JRNL REF PLOS ONE V. 9 12873 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25479443 JRNL DOI 10.1371/JOURNAL.PONE.0112873 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 12817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7749 - 3.9663 0.98 3123 150 0.1949 0.2330 REMARK 3 2 3.9663 - 3.1483 0.99 3068 149 0.1778 0.2304 REMARK 3 3 3.1483 - 2.7504 0.99 3011 167 0.1907 0.2274 REMARK 3 4 2.7504 - 2.4989 0.99 2992 157 0.2151 0.2798 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2055 REMARK 3 ANGLE : 1.712 2728 REMARK 3 CHIRALITY : 0.054 298 REMARK 3 PLANARITY : 0.006 306 REMARK 3 DIHEDRAL : 12.427 760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.94900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4FBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 2.6M AMMONIUM SULFATE, PH REMARK 280 8.8, IN MESO CRYSTALLIZATION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -51.42700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.07418 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.42700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -89.07418 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 239 REMARK 465 THR A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 GLY A 244 REMARK 465 ALA A 245 REMARK 465 THR A 246 REMARK 465 PRO A 247 REMARK 465 ALA A 248 REMARK 465 ASP A 249 REMARK 465 ASP A 250 REMARK 465 LEU A 251 REMARK 465 GLU A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CZ NH1 NH2 REMARK 470 LYS A 39 NZ REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 GLU A 72 CD OE1 OE2 REMARK 470 ARG A 229 CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 103 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 220 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 LFA A 313 REMARK 610 LFA A 314 REMARK 610 LFA A 315 REMARK 610 LFA A 316 REMARK 610 LFA A 317 REMARK 610 LFA A 320 REMARK 610 LFA A 321 REMARK 610 LFA A 322 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 322 DBREF 4PXK A 1 250 UNP Q5UXY6 Q5UXY6_HALMA 1 250 SEQADV 4PXK ASN A 94 UNP Q5UXY6 ASP 94 ENGINEERED MUTATION SEQADV 4PXK LEU A 251 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK GLU A 252 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK HIS A 253 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK HIS A 254 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK HIS A 255 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK HIS A 256 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK HIS A 257 UNP Q5UXY6 EXPRESSION TAG SEQADV 4PXK HIS A 258 UNP Q5UXY6 EXPRESSION TAG SEQRES 1 A 258 MET PRO ALA PRO GLY SER GLU GLY ILE TRP LEU TRP LEU SEQRES 2 A 258 GLY THR ALA GLY MET PHE LEU GLY MET LEU TYR PHE ILE SEQRES 3 A 258 ALA ARG GLY TRP GLY GLU THR ASP GLY ARG ARG GLN LYS SEQRES 4 A 258 PHE TYR ILE ALA THR ILE LEU ILE THR ALA ILE ALA PHE SEQRES 5 A 258 VAL ASN TYR LEU ALA MET ALA LEU GLY PHE GLY LEU THR SEQRES 6 A 258 PHE ILE GLU PHE GLY GLY GLU GLN HIS PRO ILE TYR TRP SEQRES 7 A 258 ALA ARG TYR THR ASP TRP LEU PHE THR THR PRO LEU LEU SEQRES 8 A 258 LEU TYR ASN LEU GLY LEU LEU ALA GLY ALA ASP ARG ASN SEQRES 9 A 258 THR ILE TYR SER LEU VAL SER LEU ASP VAL LEU MET ILE SEQRES 10 A 258 GLY THR GLY VAL VAL ALA THR LEU SER ALA GLY SER GLY SEQRES 11 A 258 VAL LEU SER ALA GLY ALA GLU ARG LEU VAL TRP TRP GLY SEQRES 12 A 258 ILE SER THR ALA PHE LEU LEU VAL LEU LEU TYR PHE LEU SEQRES 13 A 258 PHE SER SER LEU SER GLY ARG VAL ALA ASN LEU PRO SER SEQRES 14 A 258 ASP THR ARG SER THR PHE LYS THR LEU ARG ASN LEU VAL SEQRES 15 A 258 THR VAL VAL TRP LEU VAL TYR PRO VAL TRP TRP LEU VAL SEQRES 16 A 258 GLY SER GLU GLY LEU GLY LEU VAL GLY ILE GLY ILE GLU SEQRES 17 A 258 THR ALA GLY PHE MET VAL ILE ASP LEU VAL ALA LYS VAL SEQRES 18 A 258 GLY PHE GLY ILE ILE LEU LEU ARG SER HIS GLY VAL LEU SEQRES 19 A 258 ASP GLY ALA ALA GLU THR THR GLY THR GLY ALA THR PRO SEQRES 20 A 258 ALA ASP ASP LEU GLU HIS HIS HIS HIS HIS HIS HET RET A 301 20 HET LFA A 302 10 HET LFA A 303 12 HET LFA A 304 8 HET LFA A 305 12 HET LFA A 306 11 HET LFA A 307 10 HET LFA A 308 8 HET LFA A 309 10 HET LFA A 310 10 HET LFA A 311 10 HET LFA A 312 12 HET LFA A 313 16 HET LFA A 314 8 HET LFA A 315 6 HET LFA A 316 6 HET LFA A 317 5 HET SO4 A 318 5 HET SO4 A 319 5 HET LFA A 320 10 HET LFA A 321 10 HET LFA A 322 14 HETNAM RET RETINAL HETNAM LFA EICOSANE HETNAM SO4 SULFATE ION HETSYN LFA LIPID FRAGMENT FORMUL 2 RET C20 H28 O FORMUL 3 LFA 19(C20 H42) FORMUL 19 SO4 2(O4 S 2-) FORMUL 24 HOH *19(H2 O) HELIX 1 1 GLU A 7 TRP A 30 1 24 HELIX 2 2 ASP A 34 LEU A 60 1 27 HELIX 3 3 TRP A 78 ALA A 99 1 22 HELIX 4 4 ASP A 102 SER A 126 1 25 HELIX 5 5 SER A 133 SER A 159 1 27 HELIX 6 6 LEU A 160 ASN A 166 1 7 HELIX 7 7 PRO A 168 GLY A 196 1 29 HELIX 8 8 GLY A 204 LEU A 228 1 25 HELIX 9 9 SER A 230 GLY A 236 1 7 SHEET 1 A 2 LEU A 64 PHE A 69 0 SHEET 2 A 2 GLU A 72 TYR A 77 -1 O ILE A 76 N THR A 65 LINK NZ LYS A 220 C15 RET A 301 1555 1555 1.32 SITE 1 AC1 9 TRP A 84 THR A 88 MET A 116 SER A 145 SITE 2 AC1 9 TRP A 186 TYR A 189 PRO A 190 TRP A 193 SITE 3 AC1 9 LYS A 220 SITE 1 AC2 1 LFA A 303 SITE 1 AC3 3 ASN A 54 LFA A 302 LFA A 314 SITE 1 AC4 1 PHE A 157 SITE 1 AC5 2 ASN A 180 LEU A 202 SITE 1 AC6 1 TYR A 24 SITE 1 AC7 2 LEU A 85 LFA A 320 SITE 1 AC8 2 LEU A 132 LFA A 309 SITE 1 AC9 2 LFA A 308 LFA A 310 SITE 1 BC1 2 ILE A 9 LFA A 309 SITE 1 BC2 1 SER A 133 SITE 1 BC3 1 LEU A 139 SITE 1 BC4 2 VAL A 114 LFA A 303 SITE 1 BC5 1 TRP A 192 SITE 1 BC6 2 ARG A 172 LYS A 176 SITE 1 BC7 2 LYS A 176 ARG A 179 SITE 1 BC8 5 TYR A 93 ALA A 101 ILE A 106 TYR A 107 SITE 2 BC8 5 LFA A 307 SITE 1 BC9 3 LEU A 112 PHE A 148 PHE A 155 CRYST1 102.854 102.854 60.003 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009723 0.005613 0.000000 0.00000 SCALE2 0.000000 0.011227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016666 0.00000