data_4QDY # _entry.id 4QDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QDY pdb_00004qdy 10.2210/pdb4qdy/pdb RCSB RCSB085933 ? ? WWPDB D_1000085933 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417515 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4QDY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-05-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a conserved hypothetical protein (SP_1560) from Streptococcus pneumoniae TIGR4 at 2.74 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4QDY _cell.length_a 77.930 _cell.length_b 77.930 _cell.length_c 145.240 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QDY _symmetry.Int_Tables_number 181 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'conserved hypothetical protein' 24436.973 1 ? ? ? ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GRQVKTETYTNTVTNVPIDIRYNSDKYFISGFASEVSVVLTGANRLSLASE(MSE)QESTRKFKVTADLTDAGVGTIEVP LSIEDLPNGLTAVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQIENV(MSE)VSDKEVSITSDQETLDRIDKIIA VLPTSERITGNYSGSVPLQAIDRNGVVLPAVITPFDTI(MSE)KVTTKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN ; _entity_poly.pdbx_seq_one_letter_code_can ;GRQVKTETYTNTVTNVPIDIRYNSDKYFISGFASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGVGTIEVPLSIE DLPNGLTAVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKIIAVLPTSERI TGNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417515 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 GLN n 1 4 VAL n 1 5 LYS n 1 6 THR n 1 7 GLU n 1 8 THR n 1 9 TYR n 1 10 THR n 1 11 ASN n 1 12 THR n 1 13 VAL n 1 14 THR n 1 15 ASN n 1 16 VAL n 1 17 PRO n 1 18 ILE n 1 19 ASP n 1 20 ILE n 1 21 ARG n 1 22 TYR n 1 23 ASN n 1 24 SER n 1 25 ASP n 1 26 LYS n 1 27 TYR n 1 28 PHE n 1 29 ILE n 1 30 SER n 1 31 GLY n 1 32 PHE n 1 33 ALA n 1 34 SER n 1 35 GLU n 1 36 VAL n 1 37 SER n 1 38 VAL n 1 39 VAL n 1 40 LEU n 1 41 THR n 1 42 GLY n 1 43 ALA n 1 44 ASN n 1 45 ARG n 1 46 LEU n 1 47 SER n 1 48 LEU n 1 49 ALA n 1 50 SER n 1 51 GLU n 1 52 MSE n 1 53 GLN n 1 54 GLU n 1 55 SER n 1 56 THR n 1 57 ARG n 1 58 LYS n 1 59 PHE n 1 60 LYS n 1 61 VAL n 1 62 THR n 1 63 ALA n 1 64 ASP n 1 65 LEU n 1 66 THR n 1 67 ASP n 1 68 ALA n 1 69 GLY n 1 70 VAL n 1 71 GLY n 1 72 THR n 1 73 ILE n 1 74 GLU n 1 75 VAL n 1 76 PRO n 1 77 LEU n 1 78 SER n 1 79 ILE n 1 80 GLU n 1 81 ASP n 1 82 LEU n 1 83 PRO n 1 84 ASN n 1 85 GLY n 1 86 LEU n 1 87 THR n 1 88 ALA n 1 89 VAL n 1 90 ALA n 1 91 THR n 1 92 PRO n 1 93 GLN n 1 94 LYS n 1 95 ILE n 1 96 THR n 1 97 VAL n 1 98 LYS n 1 99 ILE n 1 100 GLY n 1 101 LYS n 1 102 LYS n 1 103 ALA n 1 104 GLN n 1 105 LYS n 1 106 ASP n 1 107 LYS n 1 108 VAL n 1 109 LYS n 1 110 ILE n 1 111 VAL n 1 112 PRO n 1 113 GLU n 1 114 ILE n 1 115 ASP n 1 116 PRO n 1 117 SER n 1 118 GLN n 1 119 ILE n 1 120 ASP n 1 121 SER n 1 122 ARG n 1 123 VAL n 1 124 GLN n 1 125 ILE n 1 126 GLU n 1 127 ASN n 1 128 VAL n 1 129 MSE n 1 130 VAL n 1 131 SER n 1 132 ASP n 1 133 LYS n 1 134 GLU n 1 135 VAL n 1 136 SER n 1 137 ILE n 1 138 THR n 1 139 SER n 1 140 ASP n 1 141 GLN n 1 142 GLU n 1 143 THR n 1 144 LEU n 1 145 ASP n 1 146 ARG n 1 147 ILE n 1 148 ASP n 1 149 LYS n 1 150 ILE n 1 151 ILE n 1 152 ALA n 1 153 VAL n 1 154 LEU n 1 155 PRO n 1 156 THR n 1 157 SER n 1 158 GLU n 1 159 ARG n 1 160 ILE n 1 161 THR n 1 162 GLY n 1 163 ASN n 1 164 TYR n 1 165 SER n 1 166 GLY n 1 167 SER n 1 168 VAL n 1 169 PRO n 1 170 LEU n 1 171 GLN n 1 172 ALA n 1 173 ILE n 1 174 ASP n 1 175 ARG n 1 176 ASN n 1 177 GLY n 1 178 VAL n 1 179 VAL n 1 180 LEU n 1 181 PRO n 1 182 ALA n 1 183 VAL n 1 184 ILE n 1 185 THR n 1 186 PRO n 1 187 PHE n 1 188 ASP n 1 189 THR n 1 190 ILE n 1 191 MSE n 1 192 LYS n 1 193 VAL n 1 194 THR n 1 195 THR n 1 196 LYS n 1 197 PRO n 1 198 VAL n 1 199 ALA n 1 200 PRO n 1 201 SER n 1 202 SER n 1 203 SER n 1 204 THR n 1 205 SER n 1 206 ASN n 1 207 SER n 1 208 SER n 1 209 THR n 1 210 SER n 1 211 SER n 1 212 SER n 1 213 SER n 1 214 GLU n 1 215 THR n 1 216 SER n 1 217 SER n 1 218 SER n 1 219 THR n 1 220 LYS n 1 221 ALA n 1 222 THR n 1 223 SER n 1 224 SER n 1 225 LYS n 1 226 THR n 1 227 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_346007.1, SP_1560' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TIGR4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q97PP3_STRPN _struct_ref.pdbx_db_accession Q97PP3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RQVKTETYTNTVTNVPIDIRYNSDKYFISGFASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGVGTIEVPLSIED LPNGLTAVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKIIAVLPTSERIT GNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QDY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 227 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q97PP3 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 259 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 34 _struct_ref_seq.pdbx_auth_seq_align_end 259 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4QDY _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97PP3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4QDY # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details ;42.0% polyethylene glycol 1500, 0.2M ammonium sulfate, 0.1M cesium chloride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-07-01 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97966 1.0 3 0.97895 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97966,0.97895 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.74 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 18.360 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.139 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4QDY _reflns.B_iso_Wilson_estimate 69.717 _reflns.percent_possible_obs 99.700 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all ? _reflns.d_resolution_low 39.330 _reflns.pdbx_redundancy ? _reflns.number_obs 7389 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.740 2.840 9325 ? 727 0.013 2.7 ? ? ? ? ? 100.000 1 1 2.840 2.950 8626 ? 691 0.013 3.6 ? ? ? ? ? 100.000 2 1 2.950 3.080 7716 ? 693 0.013 4.6 ? ? ? ? ? 99.600 3 1 3.080 3.250 9991 ? 745 0.013 8.0 ? ? ? ? ? 99.600 4 1 3.250 3.450 9368 ? 704 0.013 10.5 ? ? ? ? ? 99.700 5 1 3.450 3.710 9286 ? 721 0.013 15.0 ? ? ? ? ? 100.000 6 1 3.710 4.080 9023 ? 729 0.013 19.7 ? ? ? ? ? 100.000 7 1 4.080 4.670 8460 ? 753 0.013 29.6 ? ? ? ? ? 99.900 8 1 4.670 5.860 9576 ? 767 0.013 36.5 ? ? ? ? ? 100.000 9 1 5.860 ? 9177 ? 858 0.013 45.7 ? ? ? ? ? 98.500 10 1 # _refine.entry_id 4QDY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.7400 _refine.ls_d_res_low 39.330 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9200 _refine.ls_number_reflns_obs 7370 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE EXPERIMENTAL PHASES (MAD) WERE USED AS RESTRAINTS DURING REFINEMENT. 4. POLYETHYLENE GLYCOL FRAGMENTS (PEG) AND SULFATE FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2346 _refine.ls_R_factor_R_work 0.2323 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2878 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6400 _refine.ls_number_reflns_R_free 342 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 65.2071 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -13.3819 _refine.aniso_B[2][2] -13.3819 _refine.aniso_B[3][3] 26.7639 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.8878 _refine.correlation_coeff_Fo_to_Fc_free 0.8243 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 138.770 _refine.B_iso_min 17.160 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4QDY _refine_analyze.Luzzati_coordinate_error_obs 0.482 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1448 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1479 _refine_hist.d_res_high 2.7400 _refine_hist.d_res_low 39.330 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 685 ? ? 10.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 37 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 211 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1482 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 228 ? ? 10.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1658 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1482 0.008 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2026 1.070 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.060 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 1.460 ? ? ? # _refine_ls_shell.d_res_high 2.7400 _refine_ls_shell.d_res_low 3.0600 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.9200 _refine_ls_shell.number_reflns_R_work 1936 _refine_ls_shell.R_factor_all 0.2688 _refine_ls_shell.R_factor_R_work 0.2695 _refine_ls_shell.R_factor_R_free 0.2520 _refine_ls_shell.percent_reflns_R_free 4.1600 _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2020 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.title 'Crystal structure of a YbbR-like protein (SP_1560) from Streptococcus pneumoniae TIGR4 at 2.74 A resolution' _struct.entry_id 4QDY _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Two YbbR domains, PF07949 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.entry_id 4QDY # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 44 ? GLN A 53 ? ASN A 76 GLN A 85 1 ? 10 HELX_P HELX_P2 2 GLN A 141 ? ARG A 146 ? GLN A 173 ARG A 178 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 51 C ? ? ? 1_555 A MSE 52 N ? ? A GLU 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A MSE 52 C ? ? ? 1_555 A GLN 53 N ? ? A MSE 84 A GLN 85 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale3 covale both ? A VAL 128 C ? ? ? 1_555 A MSE 129 N ? ? A VAL 160 A MSE 161 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale4 covale both ? A MSE 129 C ? ? ? 1_555 A VAL 130 N ? ? A MSE 161 A VAL 162 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A ILE 190 C ? ? ? 1_555 A MSE 191 N ? ? A ILE 222 A MSE 223 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale6 covale both ? A MSE 191 C ? ? ? 1_555 A LYS 192 N ? ? A MSE 223 A LYS 224 1_555 ? ? ? ? ? ? ? 1.343 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 91 A . ? THR 123 A PRO 92 A ? PRO 124 A 1 1.48 2 THR 185 A . ? THR 217 A PRO 186 A ? PRO 218 A 1 0.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 78 ? GLU A 80 ? SER A 110 GLU A 112 A 2 LYS A 60 ? ASP A 64 ? LYS A 92 ASP A 96 A 3 TYR A 9 ? ARG A 21 ? TYR A 41 ARG A 53 A 4 GLU A 35 ? GLY A 42 ? GLU A 67 GLY A 74 A 5 THR A 87 ? THR A 91 ? THR A 119 THR A 123 B 1 TYR A 27 ? SER A 30 ? TYR A 59 SER A 62 B 2 LYS A 94 ? LYS A 107 ? LYS A 126 LYS A 139 B 3 GLY A 71 ? PRO A 76 ? GLY A 103 PRO A 108 C 1 TYR A 27 ? SER A 30 ? TYR A 59 SER A 62 C 2 LYS A 94 ? LYS A 107 ? LYS A 126 LYS A 139 C 3 VAL A 135 ? ASP A 140 ? VAL A 167 ASP A 172 C 4 VAL A 183 ? THR A 185 ? VAL A 215 THR A 217 D 1 ILE A 110 ? GLU A 113 ? ILE A 142 GLU A 145 D 2 LYS A 149 ? VAL A 153 ? LYS A 181 VAL A 185 D 3 TYR A 164 ? ILE A 173 ? TYR A 196 ILE A 205 D 4 ASP A 188 ? LYS A 196 ? ASP A 220 LYS A 228 D 5 GLN A 124 ? VAL A 130 ? GLN A 156 VAL A 162 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 80 ? O GLU A 112 N LYS A 60 ? N LYS A 92 A 2 3 O VAL A 61 ? O VAL A 93 N ASP A 19 ? N ASP A 51 A 3 4 N VAL A 13 ? N VAL A 45 O VAL A 38 ? O VAL A 70 A 4 5 N SER A 37 ? N SER A 69 O THR A 91 ? O THR A 123 B 1 2 N PHE A 28 ? N PHE A 60 O GLY A 100 ? O GLY A 132 B 2 3 O VAL A 97 ? O VAL A 129 N ILE A 73 ? N ILE A 105 C 1 2 N PHE A 28 ? N PHE A 60 O GLY A 100 ? O GLY A 132 C 2 3 N ALA A 103 ? N ALA A 135 O SER A 139 ? O SER A 171 C 3 4 N THR A 138 ? N THR A 170 O VAL A 183 ? O VAL A 215 D 1 2 N VAL A 111 ? N VAL A 143 O ILE A 150 ? O ILE A 182 D 2 3 N ILE A 151 ? N ILE A 183 O GLN A 171 ? O GLN A 203 D 3 4 N TYR A 164 ? N TYR A 196 O VAL A 193 ? O VAL A 225 D 4 5 O THR A 194 ? O THR A 226 N ASN A 127 ? N ASN A 159 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PEG 301 ? 6 'BINDING SITE FOR RESIDUE PEG A 301' AC2 Software A PEG 302 ? 3 'BINDING SITE FOR RESIDUE PEG A 302' AC3 Software A SO4 303 ? 3 'BINDING SITE FOR RESIDUE SO4 A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 31 ? GLY A 63 . ? 1_555 ? 2 AC1 6 PHE A 32 ? PHE A 64 . ? 1_555 ? 3 AC1 6 ALA A 33 ? ALA A 65 . ? 1_555 ? 4 AC1 6 LEU A 180 ? LEU A 212 . ? 4_655 ? 5 AC1 6 PRO A 181 ? PRO A 213 . ? 4_655 ? 6 AC1 6 ALA A 182 ? ALA A 214 . ? 4_655 ? 7 AC2 3 ASN A 23 ? ASN A 55 . ? 1_555 ? 8 AC2 3 LYS A 26 ? LYS A 58 . ? 1_555 ? 9 AC2 3 TYR A 27 ? TYR A 59 . ? 1_555 ? 10 AC3 3 TYR A 9 ? TYR A 41 . ? 1_555 ? 11 AC3 3 ARG A 45 ? ARG A 77 . ? 1_555 ? 12 AC3 3 GLU A 113 ? GLU A 145 . ? 6_554 ? # _atom_sites.entry_id 4QDY _atom_sites.fract_transf_matrix[1][1] 0.012832 _atom_sites.fract_transf_matrix[1][2] 0.007409 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014817 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006885 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 ARG 2 34 34 ARG ARG A . n A 1 3 GLN 3 35 35 GLN GLN A . n A 1 4 VAL 4 36 36 VAL VAL A . n A 1 5 LYS 5 37 37 LYS LYS A . n A 1 6 THR 6 38 38 THR THR A . n A 1 7 GLU 7 39 39 GLU GLU A . n A 1 8 THR 8 40 40 THR THR A . n A 1 9 TYR 9 41 41 TYR TYR A . n A 1 10 THR 10 42 42 THR THR A . n A 1 11 ASN 11 43 43 ASN ASN A . n A 1 12 THR 12 44 44 THR THR A . n A 1 13 VAL 13 45 45 VAL VAL A . n A 1 14 THR 14 46 46 THR THR A . n A 1 15 ASN 15 47 47 ASN ASN A . n A 1 16 VAL 16 48 48 VAL VAL A . n A 1 17 PRO 17 49 49 PRO PRO A . n A 1 18 ILE 18 50 50 ILE ILE A . n A 1 19 ASP 19 51 51 ASP ASP A . n A 1 20 ILE 20 52 52 ILE ILE A . n A 1 21 ARG 21 53 53 ARG ARG A . n A 1 22 TYR 22 54 54 TYR TYR A . n A 1 23 ASN 23 55 55 ASN ASN A . n A 1 24 SER 24 56 56 SER SER A . n A 1 25 ASP 25 57 57 ASP ASP A . n A 1 26 LYS 26 58 58 LYS LYS A . n A 1 27 TYR 27 59 59 TYR TYR A . n A 1 28 PHE 28 60 60 PHE PHE A . n A 1 29 ILE 29 61 61 ILE ILE A . n A 1 30 SER 30 62 62 SER SER A . n A 1 31 GLY 31 63 63 GLY GLY A . n A 1 32 PHE 32 64 64 PHE PHE A . n A 1 33 ALA 33 65 65 ALA ALA A . n A 1 34 SER 34 66 66 SER SER A . n A 1 35 GLU 35 67 67 GLU GLU A . n A 1 36 VAL 36 68 68 VAL VAL A . n A 1 37 SER 37 69 69 SER SER A . n A 1 38 VAL 38 70 70 VAL VAL A . n A 1 39 VAL 39 71 71 VAL VAL A . n A 1 40 LEU 40 72 72 LEU LEU A . n A 1 41 THR 41 73 73 THR THR A . n A 1 42 GLY 42 74 74 GLY GLY A . n A 1 43 ALA 43 75 75 ALA ALA A . n A 1 44 ASN 44 76 76 ASN ASN A . n A 1 45 ARG 45 77 77 ARG ARG A . n A 1 46 LEU 46 78 78 LEU LEU A . n A 1 47 SER 47 79 79 SER SER A . n A 1 48 LEU 48 80 80 LEU LEU A . n A 1 49 ALA 49 81 81 ALA ALA A . n A 1 50 SER 50 82 82 SER SER A . n A 1 51 GLU 51 83 83 GLU GLU A . n A 1 52 MSE 52 84 84 MSE MSE A . n A 1 53 GLN 53 85 85 GLN GLN A . n A 1 54 GLU 54 86 86 GLU GLU A . n A 1 55 SER 55 87 87 SER SER A . n A 1 56 THR 56 88 88 THR THR A . n A 1 57 ARG 57 89 89 ARG ARG A . n A 1 58 LYS 58 90 90 LYS LYS A . n A 1 59 PHE 59 91 91 PHE PHE A . n A 1 60 LYS 60 92 92 LYS LYS A . n A 1 61 VAL 61 93 93 VAL VAL A . n A 1 62 THR 62 94 94 THR THR A . n A 1 63 ALA 63 95 95 ALA ALA A . n A 1 64 ASP 64 96 96 ASP ASP A . n A 1 65 LEU 65 97 97 LEU LEU A . n A 1 66 THR 66 98 98 THR THR A . n A 1 67 ASP 67 99 99 ASP ASP A . n A 1 68 ALA 68 100 100 ALA ALA A . n A 1 69 GLY 69 101 101 GLY GLY A . n A 1 70 VAL 70 102 102 VAL VAL A . n A 1 71 GLY 71 103 103 GLY GLY A . n A 1 72 THR 72 104 104 THR THR A . n A 1 73 ILE 73 105 105 ILE ILE A . n A 1 74 GLU 74 106 106 GLU GLU A . n A 1 75 VAL 75 107 107 VAL VAL A . n A 1 76 PRO 76 108 108 PRO PRO A . n A 1 77 LEU 77 109 109 LEU LEU A . n A 1 78 SER 78 110 110 SER SER A . n A 1 79 ILE 79 111 111 ILE ILE A . n A 1 80 GLU 80 112 112 GLU GLU A . n A 1 81 ASP 81 113 113 ASP ASP A . n A 1 82 LEU 82 114 114 LEU LEU A . n A 1 83 PRO 83 115 115 PRO PRO A . n A 1 84 ASN 84 116 116 ASN ASN A . n A 1 85 GLY 85 117 117 GLY GLY A . n A 1 86 LEU 86 118 118 LEU LEU A . n A 1 87 THR 87 119 119 THR THR A . n A 1 88 ALA 88 120 120 ALA ALA A . n A 1 89 VAL 89 121 121 VAL VAL A . n A 1 90 ALA 90 122 122 ALA ALA A . n A 1 91 THR 91 123 123 THR THR A . n A 1 92 PRO 92 124 124 PRO PRO A . n A 1 93 GLN 93 125 125 GLN GLN A . n A 1 94 LYS 94 126 126 LYS LYS A . n A 1 95 ILE 95 127 127 ILE ILE A . n A 1 96 THR 96 128 128 THR THR A . n A 1 97 VAL 97 129 129 VAL VAL A . n A 1 98 LYS 98 130 130 LYS LYS A . n A 1 99 ILE 99 131 131 ILE ILE A . n A 1 100 GLY 100 132 132 GLY GLY A . n A 1 101 LYS 101 133 133 LYS LYS A . n A 1 102 LYS 102 134 134 LYS LYS A . n A 1 103 ALA 103 135 135 ALA ALA A . n A 1 104 GLN 104 136 136 GLN GLN A . n A 1 105 LYS 105 137 137 LYS LYS A . n A 1 106 ASP 106 138 138 ASP ASP A . n A 1 107 LYS 107 139 139 LYS LYS A . n A 1 108 VAL 108 140 140 VAL VAL A . n A 1 109 LYS 109 141 141 LYS LYS A . n A 1 110 ILE 110 142 142 ILE ILE A . n A 1 111 VAL 111 143 143 VAL VAL A . n A 1 112 PRO 112 144 144 PRO PRO A . n A 1 113 GLU 113 145 145 GLU GLU A . n A 1 114 ILE 114 146 146 ILE ILE A . n A 1 115 ASP 115 147 147 ASP ASP A . n A 1 116 PRO 116 148 148 PRO PRO A . n A 1 117 SER 117 149 149 SER SER A . n A 1 118 GLN 118 150 150 GLN GLN A . n A 1 119 ILE 119 151 151 ILE ILE A . n A 1 120 ASP 120 152 152 ASP ASP A . n A 1 121 SER 121 153 153 SER SER A . n A 1 122 ARG 122 154 154 ARG ARG A . n A 1 123 VAL 123 155 155 VAL VAL A . n A 1 124 GLN 124 156 156 GLN GLN A . n A 1 125 ILE 125 157 157 ILE ILE A . n A 1 126 GLU 126 158 158 GLU GLU A . n A 1 127 ASN 127 159 159 ASN ASN A . n A 1 128 VAL 128 160 160 VAL VAL A . n A 1 129 MSE 129 161 161 MSE MSE A . n A 1 130 VAL 130 162 162 VAL VAL A . n A 1 131 SER 131 163 163 SER SER A . n A 1 132 ASP 132 164 164 ASP ASP A . n A 1 133 LYS 133 165 165 LYS LYS A . n A 1 134 GLU 134 166 166 GLU GLU A . n A 1 135 VAL 135 167 167 VAL VAL A . n A 1 136 SER 136 168 168 SER SER A . n A 1 137 ILE 137 169 169 ILE ILE A . n A 1 138 THR 138 170 170 THR THR A . n A 1 139 SER 139 171 171 SER SER A . n A 1 140 ASP 140 172 172 ASP ASP A . n A 1 141 GLN 141 173 173 GLN GLN A . n A 1 142 GLU 142 174 174 GLU GLU A . n A 1 143 THR 143 175 175 THR THR A . n A 1 144 LEU 144 176 176 LEU LEU A . n A 1 145 ASP 145 177 177 ASP ASP A . n A 1 146 ARG 146 178 178 ARG ARG A . n A 1 147 ILE 147 179 179 ILE ILE A . n A 1 148 ASP 148 180 180 ASP ASP A . n A 1 149 LYS 149 181 181 LYS LYS A . n A 1 150 ILE 150 182 182 ILE ILE A . n A 1 151 ILE 151 183 183 ILE ILE A . n A 1 152 ALA 152 184 184 ALA ALA A . n A 1 153 VAL 153 185 185 VAL VAL A . n A 1 154 LEU 154 186 186 LEU LEU A . n A 1 155 PRO 155 187 187 PRO PRO A . n A 1 156 THR 156 188 188 THR THR A . n A 1 157 SER 157 189 189 SER SER A . n A 1 158 GLU 158 190 190 GLU GLU A . n A 1 159 ARG 159 191 191 ARG ARG A . n A 1 160 ILE 160 192 192 ILE ILE A . n A 1 161 THR 161 193 193 THR THR A . n A 1 162 GLY 162 194 194 GLY GLY A . n A 1 163 ASN 163 195 195 ASN ASN A . n A 1 164 TYR 164 196 196 TYR TYR A . n A 1 165 SER 165 197 197 SER SER A . n A 1 166 GLY 166 198 198 GLY GLY A . n A 1 167 SER 167 199 199 SER SER A . n A 1 168 VAL 168 200 200 VAL VAL A . n A 1 169 PRO 169 201 201 PRO PRO A . n A 1 170 LEU 170 202 202 LEU LEU A . n A 1 171 GLN 171 203 203 GLN GLN A . n A 1 172 ALA 172 204 204 ALA ALA A . n A 1 173 ILE 173 205 205 ILE ILE A . n A 1 174 ASP 174 206 206 ASP ASP A . n A 1 175 ARG 175 207 207 ARG ARG A . n A 1 176 ASN 176 208 208 ASN ASN A . n A 1 177 GLY 177 209 209 GLY GLY A . n A 1 178 VAL 178 210 210 VAL VAL A . n A 1 179 VAL 179 211 211 VAL VAL A . n A 1 180 LEU 180 212 212 LEU LEU A . n A 1 181 PRO 181 213 213 PRO PRO A . n A 1 182 ALA 182 214 214 ALA ALA A . n A 1 183 VAL 183 215 215 VAL VAL A . n A 1 184 ILE 184 216 216 ILE ILE A . n A 1 185 THR 185 217 217 THR THR A . n A 1 186 PRO 186 218 218 PRO PRO A . n A 1 187 PHE 187 219 219 PHE PHE A . n A 1 188 ASP 188 220 220 ASP ASP A . n A 1 189 THR 189 221 221 THR THR A . n A 1 190 ILE 190 222 222 ILE ILE A . n A 1 191 MSE 191 223 223 MSE MSE A . n A 1 192 LYS 192 224 224 LYS LYS A . n A 1 193 VAL 193 225 225 VAL VAL A . n A 1 194 THR 194 226 226 THR THR A . n A 1 195 THR 195 227 227 THR THR A . n A 1 196 LYS 196 228 228 LYS LYS A . n A 1 197 PRO 197 229 229 PRO PRO A . n A 1 198 VAL 198 230 230 VAL VAL A . n A 1 199 ALA 199 231 ? ? ? A . n A 1 200 PRO 200 232 ? ? ? A . n A 1 201 SER 201 233 ? ? ? A . n A 1 202 SER 202 234 ? ? ? A . n A 1 203 SER 203 235 ? ? ? A . n A 1 204 THR 204 236 ? ? ? A . n A 1 205 SER 205 237 ? ? ? A . n A 1 206 ASN 206 238 ? ? ? A . n A 1 207 SER 207 239 ? ? ? A . n A 1 208 SER 208 240 ? ? ? A . n A 1 209 THR 209 241 ? ? ? A . n A 1 210 SER 210 242 ? ? ? A . n A 1 211 SER 211 243 ? ? ? A . n A 1 212 SER 212 244 ? ? ? A . n A 1 213 SER 213 245 ? ? ? A . n A 1 214 GLU 214 246 ? ? ? A . n A 1 215 THR 215 247 ? ? ? A . n A 1 216 SER 216 248 ? ? ? A . n A 1 217 SER 217 249 ? ? ? A . n A 1 218 SER 218 250 ? ? ? A . n A 1 219 THR 219 251 ? ? ? A . n A 1 220 LYS 220 252 ? ? ? A . n A 1 221 ALA 221 253 ? ? ? A . n A 1 222 THR 222 254 ? ? ? A . n A 1 223 SER 223 255 ? ? ? A . n A 1 224 SER 224 256 ? ? ? A . n A 1 225 LYS 225 257 ? ? ? A . n A 1 226 THR 226 258 ? ? ? A . n A 1 227 ASN 227 259 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 301 260 PEG PEG A . C 2 PEG 1 302 261 PEG PEG A . D 3 SO4 1 303 262 SO4 SO4 A . E 4 HOH 1 401 263 HOH HOH A . E 4 HOH 2 402 264 HOH HOH A . E 4 HOH 3 403 265 HOH HOH A . E 4 HOH 4 404 266 HOH HOH A . E 4 HOH 5 405 267 HOH HOH A . E 4 HOH 6 406 268 HOH HOH A . E 4 HOH 7 407 269 HOH HOH A . E 4 HOH 8 408 270 HOH HOH A . E 4 HOH 9 409 271 HOH HOH A . E 4 HOH 10 410 272 HOH HOH A . E 4 HOH 11 411 273 HOH HOH A . E 4 HOH 12 412 274 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 52 A MSE 84 ? MET SELENOMETHIONINE 2 A MSE 129 A MSE 161 ? MET SELENOMETHIONINE 3 A MSE 191 A MSE 223 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3870 ? 1 MORE -24 ? 1 'SSA (A^2)' 20940 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 77.9300000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation_author.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 36.5669 _pdbx_refine_tls.origin_y -2.8805 _pdbx_refine_tls.origin_z 44.4506 _pdbx_refine_tls.T[1][1] 0.0700 _pdbx_refine_tls.T[2][2] -0.1025 _pdbx_refine_tls.T[3][3] -0.0487 _pdbx_refine_tls.T[1][2] 0.2058 _pdbx_refine_tls.T[1][3] 0.0271 _pdbx_refine_tls.T[2][3] -0.0217 _pdbx_refine_tls.L[1][1] 0.4861 _pdbx_refine_tls.L[2][2] 1.7953 _pdbx_refine_tls.L[3][3] 1.2657 _pdbx_refine_tls.L[1][2] 0.2692 _pdbx_refine_tls.L[1][3] 0.1977 _pdbx_refine_tls.L[2][3] -0.8692 _pdbx_refine_tls.S[1][1] 0.1081 _pdbx_refine_tls.S[2][2] -0.0986 _pdbx_refine_tls.S[3][3] -0.0095 _pdbx_refine_tls.S[1][2] 0.0928 _pdbx_refine_tls.S[1][3] -0.0710 _pdbx_refine_tls.S[2][3] 0.0079 _pdbx_refine_tls.S[2][1] -0.0466 _pdbx_refine_tls.S[3][1] 0.1905 _pdbx_refine_tls.S[3][2] 0.0517 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 33 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 230 _pdbx_refine_tls_group.selection_details '{ A|33-230}' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 34-259) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4QDY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 34 ? ? -93.70 -154.46 2 1 SER A 171 ? ? -170.20 -167.02 3 1 ALA A 184 ? ? -103.91 74.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 34 ? CG ? A ARG 2 CG 2 1 Y 1 A ARG 34 ? CD ? A ARG 2 CD 3 1 Y 1 A ARG 34 ? NE ? A ARG 2 NE 4 1 Y 1 A ARG 34 ? CZ ? A ARG 2 CZ 5 1 Y 1 A ARG 34 ? NH1 ? A ARG 2 NH1 6 1 Y 1 A ARG 34 ? NH2 ? A ARG 2 NH2 7 1 Y 1 A LYS 37 ? CG ? A LYS 5 CG 8 1 Y 1 A LYS 37 ? CD ? A LYS 5 CD 9 1 Y 1 A LYS 37 ? CE ? A LYS 5 CE 10 1 Y 1 A LYS 37 ? NZ ? A LYS 5 NZ 11 1 Y 1 A GLU 39 ? CG ? A GLU 7 CG 12 1 Y 1 A GLU 39 ? CD ? A GLU 7 CD 13 1 Y 1 A GLU 39 ? OE1 ? A GLU 7 OE1 14 1 Y 1 A GLU 39 ? OE2 ? A GLU 7 OE2 15 1 Y 1 A ASN 43 ? CG ? A ASN 11 CG 16 1 Y 1 A ASN 43 ? OD1 ? A ASN 11 OD1 17 1 Y 1 A ASN 43 ? ND2 ? A ASN 11 ND2 18 1 Y 1 A LYS 90 ? CG ? A LYS 58 CG 19 1 Y 1 A LYS 90 ? CD ? A LYS 58 CD 20 1 Y 1 A LYS 90 ? CE ? A LYS 58 CE 21 1 Y 1 A LYS 90 ? NZ ? A LYS 58 NZ 22 1 Y 1 A LYS 92 ? CG ? A LYS 60 CG 23 1 Y 1 A LYS 92 ? CD ? A LYS 60 CD 24 1 Y 1 A LYS 92 ? CE ? A LYS 60 CE 25 1 Y 1 A LYS 92 ? NZ ? A LYS 60 NZ 26 1 Y 1 A ASP 99 ? CG ? A ASP 67 CG 27 1 Y 1 A ASP 99 ? OD1 ? A ASP 67 OD1 28 1 Y 1 A ASP 99 ? OD2 ? A ASP 67 OD2 29 1 Y 1 A LYS 133 ? CG ? A LYS 101 CG 30 1 Y 1 A LYS 133 ? CD ? A LYS 101 CD 31 1 Y 1 A LYS 133 ? CE ? A LYS 101 CE 32 1 Y 1 A LYS 133 ? NZ ? A LYS 101 NZ 33 1 Y 1 A LYS 137 ? CG ? A LYS 105 CG 34 1 Y 1 A LYS 137 ? CD ? A LYS 105 CD 35 1 Y 1 A LYS 137 ? CE ? A LYS 105 CE 36 1 Y 1 A LYS 137 ? NZ ? A LYS 105 NZ 37 1 Y 1 A LYS 141 ? CG ? A LYS 109 CG 38 1 Y 1 A LYS 141 ? CD ? A LYS 109 CD 39 1 Y 1 A LYS 141 ? CE ? A LYS 109 CE 40 1 Y 1 A LYS 141 ? NZ ? A LYS 109 NZ 41 1 Y 1 A ARG 154 ? CG ? A ARG 122 CG 42 1 Y 1 A ARG 154 ? CD ? A ARG 122 CD 43 1 Y 1 A ARG 154 ? NE ? A ARG 122 NE 44 1 Y 1 A ARG 154 ? CZ ? A ARG 122 CZ 45 1 Y 1 A ARG 154 ? NH1 ? A ARG 122 NH1 46 1 Y 1 A ARG 154 ? NH2 ? A ARG 122 NH2 47 1 Y 1 A GLN 156 ? CG ? A GLN 124 CG 48 1 Y 1 A GLN 156 ? CD ? A GLN 124 CD 49 1 Y 1 A GLN 156 ? OE1 ? A GLN 124 OE1 50 1 Y 1 A GLN 156 ? NE2 ? A GLN 124 NE2 51 1 Y 1 A LYS 181 ? CD ? A LYS 149 CD 52 1 Y 1 A LYS 181 ? CE ? A LYS 149 CE 53 1 Y 1 A LYS 181 ? NZ ? A LYS 149 NZ 54 1 Y 1 A LYS 224 ? CG ? A LYS 192 CG 55 1 Y 1 A LYS 224 ? CD ? A LYS 192 CD 56 1 Y 1 A LYS 224 ? CE ? A LYS 192 CE 57 1 Y 1 A LYS 224 ? NZ ? A LYS 192 NZ 58 1 Y 1 A LYS 228 ? CG ? A LYS 196 CG 59 1 Y 1 A LYS 228 ? CD ? A LYS 196 CD 60 1 Y 1 A LYS 228 ? CE ? A LYS 196 CE 61 1 Y 1 A LYS 228 ? NZ ? A LYS 196 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 231 ? A ALA 199 2 1 Y 1 A PRO 232 ? A PRO 200 3 1 Y 1 A SER 233 ? A SER 201 4 1 Y 1 A SER 234 ? A SER 202 5 1 Y 1 A SER 235 ? A SER 203 6 1 Y 1 A THR 236 ? A THR 204 7 1 Y 1 A SER 237 ? A SER 205 8 1 Y 1 A ASN 238 ? A ASN 206 9 1 Y 1 A SER 239 ? A SER 207 10 1 Y 1 A SER 240 ? A SER 208 11 1 Y 1 A THR 241 ? A THR 209 12 1 Y 1 A SER 242 ? A SER 210 13 1 Y 1 A SER 243 ? A SER 211 14 1 Y 1 A SER 244 ? A SER 212 15 1 Y 1 A SER 245 ? A SER 213 16 1 Y 1 A GLU 246 ? A GLU 214 17 1 Y 1 A THR 247 ? A THR 215 18 1 Y 1 A SER 248 ? A SER 216 19 1 Y 1 A SER 249 ? A SER 217 20 1 Y 1 A SER 250 ? A SER 218 21 1 Y 1 A THR 251 ? A THR 219 22 1 Y 1 A LYS 252 ? A LYS 220 23 1 Y 1 A ALA 253 ? A ALA 221 24 1 Y 1 A THR 254 ? A THR 222 25 1 Y 1 A SER 255 ? A SER 223 26 1 Y 1 A SER 256 ? A SER 224 27 1 Y 1 A LYS 257 ? A LYS 225 28 1 Y 1 A THR 258 ? A THR 226 29 1 Y 1 A ASN 259 ? A ASN 227 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 'SULFATE ION' SO4 4 water HOH #