HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-MAY-14 4QDY TITLE CRYSTAL STRUCTURE OF A YBBR-LIKE PROTEIN (SP_1560) FROM STREPTOCOCCUS TITLE 2 PNEUMONIAE TIGR4 AT 2.74 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: NP_346007.1, SP_1560; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO YBBR DOMAINS, PF07949 FAMILY, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4QDY 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4QDY 1 JRNL REVDAT 3 22-NOV-17 4QDY 1 REMARK REVDAT 2 24-DEC-14 4QDY 1 TITLE REVDAT 1 30-JUL-14 4QDY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN JRNL TITL 2 (SP_1560) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 AT 2.74 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 342 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2020 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2688 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1936 REMARK 3 BIN R VALUE (WORKING SET) : 0.2695 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 84 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.38190 REMARK 3 B22 (A**2) : -13.38190 REMARK 3 B33 (A**2) : 26.76390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.482 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.824 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1482 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2026 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 685 ; 10.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 37 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 211 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1482 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 228 ; 10.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1658 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 1.46 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|33-230} REMARK 3 ORIGIN FOR THE GROUP (A): 36.5669 -2.8805 44.4506 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: -0.1025 REMARK 3 T33: -0.0487 T12: 0.2058 REMARK 3 T13: 0.0271 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.4861 L22: 1.7953 REMARK 3 L33: 1.2657 L12: 0.2692 REMARK 3 L13: 0.1977 L23: -0.8692 REMARK 3 S TENSOR REMARK 3 S11: 0.1081 S12: 0.0928 S13: -0.0710 REMARK 3 S21: -0.0466 S22: -0.0986 S23: 0.0079 REMARK 3 S31: 0.1905 S32: 0.0517 S33: -0.0095 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE EXPERIMENTAL PHASES (MAD) WERE USED AS REMARK 3 RESTRAINTS DURING REFINEMENT. 4. POLYETHYLENE GLYCOL FRAGMENTS REMARK 3 (PEG) AND SULFATE FROM THE CRYSTALLIZATION HAVE BEEN MODELED REMARK 3 INTO THE STRUCTURE REMARK 4 REMARK 4 4QDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97966,0.97895 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 39.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42.0% POLYETHYLENE GLYCOL 1500, 0.2M REMARK 280 AMMONIUM SULFATE, 0.1M CESIUM CHLORIDE, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.82667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.41333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.82667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.41333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 96.82667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.41333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.82667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.93000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 SER A 233 REMARK 465 SER A 234 REMARK 465 SER A 235 REMARK 465 THR A 236 REMARK 465 SER A 237 REMARK 465 ASN A 238 REMARK 465 SER A 239 REMARK 465 SER A 240 REMARK 465 THR A 241 REMARK 465 SER A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 SER A 245 REMARK 465 GLU A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 SER A 249 REMARK 465 SER A 250 REMARK 465 THR A 251 REMARK 465 LYS A 252 REMARK 465 ALA A 253 REMARK 465 THR A 254 REMARK 465 SER A 255 REMARK 465 SER A 256 REMARK 465 LYS A 257 REMARK 465 THR A 258 REMARK 465 ASN A 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 ASN A 43 CG OD1 ND2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 LYS A 181 CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 34 -154.46 -93.70 REMARK 500 SER A 171 -167.02 -170.20 REMARK 500 ALA A 184 74.72 -103.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417515 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 34-259) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4QDY A 34 259 UNP Q97PP3 Q97PP3_STRPN 34 259 SEQADV 4QDY GLY A 0 UNP Q97PP3 EXPRESSION TAG SEQRES 1 A 227 GLY ARG GLN VAL LYS THR GLU THR TYR THR ASN THR VAL SEQRES 2 A 227 THR ASN VAL PRO ILE ASP ILE ARG TYR ASN SER ASP LYS SEQRES 3 A 227 TYR PHE ILE SER GLY PHE ALA SER GLU VAL SER VAL VAL SEQRES 4 A 227 LEU THR GLY ALA ASN ARG LEU SER LEU ALA SER GLU MSE SEQRES 5 A 227 GLN GLU SER THR ARG LYS PHE LYS VAL THR ALA ASP LEU SEQRES 6 A 227 THR ASP ALA GLY VAL GLY THR ILE GLU VAL PRO LEU SER SEQRES 7 A 227 ILE GLU ASP LEU PRO ASN GLY LEU THR ALA VAL ALA THR SEQRES 8 A 227 PRO GLN LYS ILE THR VAL LYS ILE GLY LYS LYS ALA GLN SEQRES 9 A 227 LYS ASP LYS VAL LYS ILE VAL PRO GLU ILE ASP PRO SER SEQRES 10 A 227 GLN ILE ASP SER ARG VAL GLN ILE GLU ASN VAL MSE VAL SEQRES 11 A 227 SER ASP LYS GLU VAL SER ILE THR SER ASP GLN GLU THR SEQRES 12 A 227 LEU ASP ARG ILE ASP LYS ILE ILE ALA VAL LEU PRO THR SEQRES 13 A 227 SER GLU ARG ILE THR GLY ASN TYR SER GLY SER VAL PRO SEQRES 14 A 227 LEU GLN ALA ILE ASP ARG ASN GLY VAL VAL LEU PRO ALA SEQRES 15 A 227 VAL ILE THR PRO PHE ASP THR ILE MSE LYS VAL THR THR SEQRES 16 A 227 LYS PRO VAL ALA PRO SER SER SER THR SER ASN SER SER SEQRES 17 A 227 THR SER SER SER SER GLU THR SER SER SER THR LYS ALA SEQRES 18 A 227 THR SER SER LYS THR ASN MODRES 4QDY MSE A 84 MET SELENOMETHIONINE MODRES 4QDY MSE A 161 MET SELENOMETHIONINE MODRES 4QDY MSE A 223 MET SELENOMETHIONINE HET MSE A 84 8 HET MSE A 161 8 HET MSE A 223 8 HET PEG A 301 7 HET PEG A 302 7 HET SO4 A 303 5 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 PEG 2(C4 H10 O3) FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *12(H2 O) HELIX 1 1 ASN A 76 GLN A 85 1 10 HELIX 2 2 GLN A 173 ARG A 178 1 6 SHEET 1 A 5 SER A 110 GLU A 112 0 SHEET 2 A 5 LYS A 92 ASP A 96 -1 N LYS A 92 O GLU A 112 SHEET 3 A 5 TYR A 41 ARG A 53 1 N ASP A 51 O VAL A 93 SHEET 4 A 5 GLU A 67 GLY A 74 -1 O VAL A 70 N VAL A 45 SHEET 5 A 5 THR A 119 THR A 123 -1 O THR A 123 N SER A 69 SHEET 1 B 3 TYR A 59 SER A 62 0 SHEET 2 B 3 LYS A 126 LYS A 139 -1 O GLY A 132 N PHE A 60 SHEET 3 B 3 GLY A 103 PRO A 108 -1 N ILE A 105 O VAL A 129 SHEET 1 C 4 TYR A 59 SER A 62 0 SHEET 2 C 4 LYS A 126 LYS A 139 -1 O GLY A 132 N PHE A 60 SHEET 3 C 4 VAL A 167 ASP A 172 -1 O SER A 171 N ALA A 135 SHEET 4 C 4 VAL A 215 THR A 217 -1 O VAL A 215 N THR A 170 SHEET 1 D 5 ILE A 142 GLU A 145 0 SHEET 2 D 5 LYS A 181 VAL A 185 1 O ILE A 182 N VAL A 143 SHEET 3 D 5 TYR A 196 ILE A 205 -1 O GLN A 203 N ILE A 183 SHEET 4 D 5 ASP A 220 LYS A 228 -1 O VAL A 225 N TYR A 196 SHEET 5 D 5 GLN A 156 VAL A 162 -1 N ASN A 159 O THR A 226 LINK C GLU A 83 N MSE A 84 1555 1555 1.34 LINK C MSE A 84 N GLN A 85 1555 1555 1.35 LINK C VAL A 160 N MSE A 161 1555 1555 1.34 LINK C MSE A 161 N VAL A 162 1555 1555 1.34 LINK C ILE A 222 N MSE A 223 1555 1555 1.35 LINK C MSE A 223 N LYS A 224 1555 1555 1.34 CISPEP 1 THR A 123 PRO A 124 0 1.48 CISPEP 2 THR A 217 PRO A 218 0 0.13 SITE 1 AC1 6 GLY A 63 PHE A 64 ALA A 65 LEU A 212 SITE 2 AC1 6 PRO A 213 ALA A 214 SITE 1 AC2 3 ASN A 55 LYS A 58 TYR A 59 SITE 1 AC3 3 TYR A 41 ARG A 77 GLU A 145 CRYST1 77.930 77.930 145.240 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012832 0.007409 0.000000 0.00000 SCALE2 0.000000 0.014817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006885 0.00000