HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAY-14 4QHW TITLE CRYSTAL STRUCTURE OF A PUTATIVE TWO-DOMAIN SUGAR HYDROLASE TITLE 2 (BACCAC_02064) FROM BACTEROIDES CACCAE ATCC 43185 AT 1.35 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES CACCAE; SOURCE 3 ORGANISM_TAXID: 411901; SOURCE 4 STRAIN: ATCC 43185; SOURCE 5 GENE: BACCAC_02064; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO DOMAIN PROTEIN, GALACTOSE-BINDING DOMAIN-LIKE FOLD, CONCANAVALIN KEYWDS 2 A-LIKE FOLD, PF11958 FAMILY, DUF3472, STRUCTURAL GENOMICS, JOINT KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 4 PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4QHW 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4QHW 1 JRNL REVDAT 3 22-NOV-17 4QHW 1 REMARK REVDAT 2 24-DEC-14 4QHW 1 TITLE REVDAT 1 23-JUL-14 4QHW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACCAC_02064) JRNL TITL 2 FROM BACTEROIDES CACCAE ATCC 43185 AT 1.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 127307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.107 REMARK 3 R VALUE (WORKING SET) : 0.106 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 496 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.034 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3608 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3348 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4896 ; 2.263 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7771 ; 1.121 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 6.703 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;35.285 ;24.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;11.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;23.349 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4125 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 882 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 1.914 ; 1.373 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1664 ; 1.861 ; 1.373 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2096 ; 2.172 ; 2.077 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6955 ; 6.354 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 439 ;31.118 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7115 ;13.206 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ETHYLENE GLYCOL (EDO), SULFATE (SO4), CHLORIDE REMARK 3 (CL), AND PEG (PEG) MODELED WERE PRESENT IN PURIFICATION/ REMARK 3 CRYSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 4QHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.812 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : 0.50100 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 2.0% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1M SODIUM HEPES PH 7.5, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.87400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.87400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.52750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.90150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.52750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.90150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.87400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.52750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.90150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.87400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.52750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.90150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 792 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 865 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 880 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1011 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1288 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 184 CD GLU A 184 OE1 0.139 REMARK 500 GLU A 184 CD GLU A 184 OE2 0.075 REMARK 500 PRO A 209 C PRO A 209 O 0.136 REMARK 500 GLU A 298 CB GLU A 298 CG -0.177 REMARK 500 LEU A 418 C LEU A 418 O -0.132 REMARK 500 LEU A 418 C LEU A 418 OXT 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 206 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 354 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 411 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 95 69.76 -151.12 REMARK 500 VAL A 104 -61.11 -104.47 REMARK 500 HIS A 189 37.84 74.88 REMARK 500 GLU A 253 53.06 -154.14 REMARK 500 ILE A 302 -73.64 -91.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 519 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419284 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4QHX RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 19-418 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4QHW A 19 418 UNP A5ZGP5 A5ZGP5_9BACE 19 418 SEQADV 4QHW GLY A 0 UNP A5ZGP5 EXPRESSION TAG SEQRES 1 A 401 GLY GLN PRO GLN GLN VAL VAL VAL GLY VAL SER GLY ASN SEQRES 2 A 401 GLY TYR VAL THR ARG GLN GLN ASP GLY ALA ARG ILE THR SEQRES 3 A 401 GLN ARG GLY VAL THR HIS TRP THR ASN PRO LYS SER ILE SEQRES 4 A 401 VAL SER ILE TYR PHE TYR LEU HIS GLN PRO THR THR ALA SEQRES 5 A 401 ASP LEU SER LEU TYR ALA LYS GLY HIS SER GLU ILE LYS SEQRES 6 A 401 VAL SER TYR GLY LYS LYS GLY PHE LYS VAL ASN LEU GLN SEQRES 7 A 401 SER ASN ASP PHE THR LYS VAL PRO VAL GLY SER ILE ASP SEQRES 8 A 401 ILE ARG GLN ALA GLY TYR VAL ARG ILE ASP LEU GLN GLY SEQRES 9 A 401 VAL SER LYS SER GLY GLU GLY PHE GLY GLU ILE LYS GLN SEQRES 10 A 401 LEU ILE ALA ASP ASN VAL THR GLY LYS SER ASN TYR VAL SEQRES 11 A 401 LYS ASP PHE SER ASP TYR TRP GLY ARG ARG GLY PRO SER SEQRES 12 A 401 VAL HIS LEU GLY TYR ALA LEU PRO GLU GLY ASP THR GLU SEQRES 13 A 401 TRP PHE TYR ASN GLU ILE THR VAL PRO LYS GLU GLY GLU SEQRES 14 A 401 THR MSE HIS SER TYR TYR MSE ALA ALA GLY PHE GLY GLU SEQRES 15 A 401 GLY TYR PHE GLY MSE GLN TYR ASN SER PRO THR GLU ARG SEQRES 16 A 401 ARG ILE LEU PHE SER VAL TRP SER PRO PHE ASP THR GLN SEQRES 17 A 401 ASN PRO LYS GLU ILE PRO ASP ASP GLN LYS ILE LYS LEU SEQRES 18 A 401 LEU ARG GLN GLY LYS ASP VAL HIS ILE GLY GLU PHE GLY SEQRES 19 A 401 ASN GLU GLY SER GLY GLY GLN SER TYR LEU LYS TYR PRO SEQRES 20 A 401 TRP LYS ALA GLY ASN THR TYR LYS PHE LEU MSE GLN ILE SEQRES 21 A 401 ARG PRO ASP GLY ASN GLY ASN THR THR TYR THR ALA TYR SEQRES 22 A 401 PHE TYR ALA THR ASP GLU LYS GLU TRP LYS LEU ILE ALA SEQRES 23 A 401 SER PHE LEU ARG PRO LYS THR ASN THR TRP TYR LYS ARG SEQRES 24 A 401 PRO HIS SER PHE LEU GLU ASN PHE SER PRO GLU GLN GLY SEQRES 25 A 401 TYR LEU SER ARG GLU VAL PHE PHE GLY ASN GLN TRP ALA SEQRES 26 A 401 ARG SER LYS GLU GLY LYS TRP SER ARG LEU THR ASP ALA SEQRES 27 A 401 THR PHE THR HIS ASP ALA THR ALA SER ALA GLN VAL ARG SEQRES 28 A 401 LEU ASP TYR GLN GLY GLY ASN THR LYS ASP ASN ARG PHE SEQRES 29 A 401 TYR LEU LYS MSE GLY GLY PHE PHE ASN GLU SER VAL PRO SEQRES 30 A 401 MSE GLY THR LYS PHE TYR CYS LYS PRO THR GLY LYS GLU SEQRES 31 A 401 PRO GLU ILE ASP TRP GLU ALA LEU LYS GLN LEU MODRES 4QHW MSE A 188 MET SELENOMETHIONINE MODRES 4QHW MSE A 193 MET SELENOMETHIONINE MODRES 4QHW MSE A 204 MET SELENOMETHIONINE MODRES 4QHW MSE A 275 MET SELENOMETHIONINE MODRES 4QHW MSE A 385 MET SELENOMETHIONINE MODRES 4QHW MSE A 395 MET SELENOMETHIONINE HET MSE A 188 8 HET MSE A 193 8 HET MSE A 204 8 HET MSE A 275 13 HET MSE A 385 8 HET MSE A 395 8 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET PEG A 510 7 HET PEG A 511 7 HET PEG A 512 7 HET SO4 A 513 5 HET SO4 A 514 10 HET SO4 A 515 5 HET SO4 A 516 5 HET SO4 A 517 5 HET SO4 A 518 5 HET CL A 519 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 EDO 9(C2 H6 O2) FORMUL 11 PEG 3(C4 H10 O3) FORMUL 14 SO4 6(O4 S 2-) FORMUL 20 CL CL 1- FORMUL 21 HOH *690(H2 O) HELIX 1 1 VAL A 27 ASN A 30 1 4 HELIX 2 2 GLN A 36 ALA A 40 5 5 HELIX 3 3 SER A 151 GLY A 158 1 8 HELIX 4 4 PRO A 182 GLU A 186 5 5 HELIX 5 5 ASN A 226 ILE A 230 5 5 HELIX 6 6 PRO A 231 LYS A 235 5 5 HELIX 7 7 THR A 294 LYS A 297 5 4 HELIX 8 8 SER A 325 GLY A 329 5 5 HELIX 9 9 ASP A 360 ALA A 365 1 6 HELIX 10 10 ASP A 411 GLN A 417 1 7 SHEET 1 A 6 GLN A 21 GLY A 26 0 SHEET 2 A 6 GLU A 131 VAL A 140 -1 O LEU A 135 N VAL A 25 SHEET 3 A 6 THR A 67 TYR A 85 -1 N ASP A 70 O ASP A 138 SHEET 4 A 6 GLY A 113 LYS A 124 -1 O GLN A 120 N LYS A 82 SHEET 5 A 6 ILE A 56 LEU A 63 -1 N PHE A 61 O VAL A 115 SHEET 6 A 6 LYS A 88 ILE A 109 0 SHEET 1 B 5 GLY A 31 ARG A 35 0 SHEET 2 B 5 ILE A 56 LEU A 63 -1 O SER A 58 N TYR A 32 SHEET 3 B 5 GLY A 113 LYS A 124 -1 O VAL A 115 N PHE A 61 SHEET 4 B 5 THR A 67 TYR A 85 -1 N LYS A 82 O GLN A 120 SHEET 5 B 5 SER A 144 ASN A 145 0 SHEET 1 C 2 ARG A 41 THR A 43 0 SHEET 2 C 2 GLY A 46 THR A 48 -1 O GLY A 46 N THR A 43 SHEET 1 D 9 HIS A 246 PHE A 250 0 SHEET 2 D 9 GLY A 256 LYS A 262 -1 O TYR A 260 N HIS A 246 SHEET 3 D 9 GLU A 211 TRP A 219 -1 N ILE A 214 O LEU A 261 SHEET 4 D 9 GLY A 200 SER A 208 -1 N GLN A 205 O ARG A 213 SHEET 5 D 9 SER A 190 GLY A 196 -1 N TYR A 192 O MSE A 204 SHEET 6 D 9 HIS A 318 ASN A 323 -1 O HIS A 318 N GLY A 196 SHEET 7 D 9 VAL A 161 TYR A 165 -1 N LEU A 163 O SER A 319 SHEET 8 D 9 ASP A 354 HIS A 359 -1 O THR A 358 N HIS A 162 SHEET 9 D 9 LYS A 398 TYR A 400 -1 O PHE A 399 N ALA A 355 SHEET 1 E 7 LYS A 237 GLN A 241 0 SHEET 2 E 7 GLU A 298 ARG A 307 -1 O SER A 304 N LEU A 239 SHEET 3 E 7 THR A 285 ALA A 293 -1 N THR A 285 O ARG A 307 SHEET 4 E 7 THR A 270 PRO A 279 -1 N LYS A 272 O TYR A 292 SHEET 5 E 7 THR A 172 THR A 180 -1 N PHE A 175 O MSE A 275 SHEET 6 E 7 ARG A 333 SER A 344 -1 O ARG A 343 N GLU A 173 SHEET 7 E 7 TRP A 349 ARG A 351 -1 O SER A 350 N ALA A 342 SHEET 1 F 8 LYS A 237 GLN A 241 0 SHEET 2 F 8 GLU A 298 ARG A 307 -1 O SER A 304 N LEU A 239 SHEET 3 F 8 THR A 285 ALA A 293 -1 N THR A 285 O ARG A 307 SHEET 4 F 8 THR A 270 PRO A 279 -1 N LYS A 272 O TYR A 292 SHEET 5 F 8 THR A 172 THR A 180 -1 N PHE A 175 O MSE A 275 SHEET 6 F 8 ARG A 333 SER A 344 -1 O ARG A 343 N GLU A 173 SHEET 7 F 8 PHE A 381 MSE A 385 -1 O PHE A 381 N PHE A 337 SHEET 8 F 8 TYR A 371 ASN A 375 -1 N GLN A 372 O LYS A 384 LINK C THR A 187 N MSE A 188 1555 1555 1.31 LINK C MSE A 188 N HIS A 189 1555 1555 1.33 LINK C TYR A 192 N MSE A 193 1555 1555 1.32 LINK C MSE A 193 N ALA A 194 1555 1555 1.34 LINK C GLY A 203 N MSE A 204 1555 1555 1.34 LINK C MSE A 204 N GLN A 205 1555 1555 1.30 LINK C LEU A 274 N MSE A 275 1555 1555 1.31 LINK C MSE A 275 N GLN A 276 1555 1555 1.33 LINK C LYS A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N GLY A 386 1555 1555 1.35 LINK C PRO A 394 N MSE A 395 1555 1555 1.35 LINK C MSE A 395 N GLY A 396 1555 1555 1.32 SITE 1 AC1 6 SER A 217 TRP A 219 GLU A 253 GLN A 258 SITE 2 AC1 6 HOH A 615 HOH A1290 SITE 1 AC2 8 SER A 79 SER A 123 LYS A 124 SER A 125 SITE 2 AC2 8 GLY A 283 ASN A 311 HOH A 780 HOH A 900 SITE 1 AC3 4 GLN A 36 GLN A 37 ASP A 38 HOH A 798 SITE 1 AC4 7 GLU A 80 ASN A 311 TRP A 313 HOH A 616 SITE 2 AC4 7 HOH A 704 HOH A 714 HOH A1257 SITE 1 AC5 6 GLY A 338 ASN A 339 ARG A 351 ASN A 379 SITE 2 AC5 6 ARG A 380 THR A 404 SITE 1 AC6 4 ARG A 116 TYR A 330 HOH A 734 HOH A 772 SITE 1 AC7 4 THR A 43 GLN A 44 HOH A 873 HOH A1263 SITE 1 AC8 6 GLU A 173 TRP A 174 ARG A 343 TRP A 412 SITE 2 AC8 6 SO4 A 518 HOH A 700 SITE 1 AC9 5 SER A 151 ASP A 152 TYR A 153 HOH A1262 SITE 2 AC9 5 HOH A1289 SITE 1 BC1 4 PHE A 197 GLY A 198 TYR A 201 TRP A 219 SITE 1 BC2 5 PHE A 150 THR A 362 HOH A 758 HOH A1249 SITE 2 BC2 5 HOH A1250 SITE 1 BC3 6 GLN A 372 LYS A 384 PHE A 389 ASN A 390 SITE 2 BC3 6 GLU A 391 HOH A1281 SITE 1 BC4 5 ARG A 35 LYS A 54 GLN A 120 HOH A 791 SITE 2 BC4 5 HOH A1051 SITE 1 BC5 10 LYS A 54 ARG A 343 TRP A 349 TRP A 412 SITE 2 BC5 10 HOH A 668 HOH A 789 HOH A 959 HOH A1216 SITE 3 BC5 10 HOH A1217 HOH A1254 SITE 1 BC6 4 LYS A 82 LYS A 345 HOH A 945 HOH A1219 SITE 1 BC7 3 ARG A 110 GLN A 111 HOH A 881 SITE 1 BC8 7 LYS A 148 ASP A 149 HOH A 659 HOH A 692 SITE 2 BC8 7 HOH A 821 HOH A1085 HOH A1268 SITE 1 BC9 6 GLN A 276 ARG A 278 EDO A 508 HOH A 700 SITE 2 BC9 6 HOH A 745 HOH A 960 SITE 1 CC1 6 GLU A 211 ARG A 212 LYS A 262 TYR A 263 SITE 2 CC1 6 PRO A 264 HOH A1261 CRYST1 87.055 117.803 113.748 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008791 0.00000