data_4QJH # _entry.id 4QJH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QJH pdb_00004qjh 10.2210/pdb4qjh/pdb NDB NA3054 ? ? RCSB RCSB086132 ? ? WWPDB D_1000086132 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-03 2 'Structure model' 1 1 2014-09-10 3 'Structure model' 1 2 2014-09-24 4 'Structure model' 1 3 2017-11-22 5 'Structure model' 1 4 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.value' 7 5 'Structure model' '_struct_conn.pdbx_dist_value' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QJH _pdbx_database_status.recvd_initial_deposition_date 2014-06-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4QJD _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eiler, D.R.' 1 'Wang, J.' 2 'Steitz, T.A.' 3 # _citation.id primary _citation.title 'Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 111 _citation.page_first 13028 _citation.page_last 13033 _citation.year 2014 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25157168 _citation.pdbx_database_id_DOI 10.1073/pnas.1414571111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eiler, D.' 1 ? primary 'Wang, J.' 2 ? primary 'Steitz, T.A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Twister Ribozyme' 8257.906 3 ? ? ? ? 2 polymer syn 'Twister Ribozyme' 15723.355 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 water nat water 18.015 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGCGGCAUUAAUGCAGCUUUAUUGCC CGCGGCAUUAAUGCAGCUUUAUUGCC A,C,E ? 2 polyribonucleotide no yes '(GTP)GCAAUAAAGCGGUUACAAGCCCGCAAAAAUAGCAGAGUAAUGUCGCG' GGCAAUAAAGCGGUUACAAGCCCGCAAAAAUAGCAGAGUAAUGUCGCG B,D,F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 C n 1 7 A n 1 8 U n 1 9 U n 1 10 A n 1 11 A n 1 12 U n 1 13 G n 1 14 C n 1 15 A n 1 16 G n 1 17 C n 1 18 U n 1 19 U n 1 20 U n 1 21 A n 1 22 U n 1 23 U n 1 24 G n 1 25 C n 1 26 C n 2 1 GTP n 2 2 G n 2 3 C n 2 4 A n 2 5 A n 2 6 U n 2 7 A n 2 8 A n 2 9 A n 2 10 G n 2 11 C n 2 12 G n 2 13 G n 2 14 U n 2 15 U n 2 16 A n 2 17 C n 2 18 A n 2 19 A n 2 20 G n 2 21 C n 2 22 C n 2 23 C n 2 24 G n 2 25 C n 2 26 A n 2 27 A n 2 28 A n 2 29 A n 2 30 A n 2 31 U n 2 32 A n 2 33 G n 2 34 C n 2 35 A n 2 36 G n 2 37 A n 2 38 G n 2 39 U n 2 40 A n 2 41 A n 2 42 U n 2 43 G n 2 44 U n 2 45 C n 2 46 G n 2 47 C n 2 48 G n # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 U 22 22 22 U U A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n B 2 1 GTP 1 27 27 GTP GTP B . n B 2 2 G 2 28 28 G G B . n B 2 3 C 3 29 29 C C B . n B 2 4 A 4 30 30 A A B . n B 2 5 A 5 31 31 A A B . n B 2 6 U 6 32 32 U U B . n B 2 7 A 7 33 33 A A B . n B 2 8 A 8 34 34 A A B . n B 2 9 A 9 35 35 A A B . n B 2 10 G 10 36 36 G G B . n B 2 11 C 11 37 37 C C B . n B 2 12 G 12 38 38 G G B . n B 2 13 G 13 39 39 G G B . n B 2 14 U 14 40 40 U U B . n B 2 15 U 15 41 41 U U B . n B 2 16 A 16 42 42 A A B . n B 2 17 C 17 43 43 C C B . n B 2 18 A 18 44 44 A A B . n B 2 19 A 19 45 45 A A B . n B 2 20 G 20 46 46 G G B . n B 2 21 C 21 47 47 C C B . n B 2 22 C 22 48 48 C C B . n B 2 23 C 23 49 49 C C B . n B 2 24 G 24 50 50 G G B . n B 2 25 C 25 51 51 C C B . n B 2 26 A 26 52 52 A A B . n B 2 27 A 27 53 53 A A B . n B 2 28 A 28 54 54 A A B . n B 2 29 A 29 55 55 A A B . n B 2 30 A 30 56 56 A A B . n B 2 31 U 31 57 57 U U B . n B 2 32 A 32 58 58 A A B . n B 2 33 G 33 59 59 G G B . n B 2 34 C 34 60 60 C C B . n B 2 35 A 35 61 61 A A B . n B 2 36 G 36 62 62 G G B . n B 2 37 A 37 63 63 A A B . n B 2 38 G 38 64 64 G G B . n B 2 39 U 39 65 65 U U B . n B 2 40 A 40 66 66 A A B . n B 2 41 A 41 67 67 A A B . n B 2 42 U 42 68 68 U U B . n B 2 43 G 43 69 69 G G B . n B 2 44 U 44 70 70 U U B . n B 2 45 C 45 71 71 C C B . n B 2 46 G 46 72 72 G G B . n B 2 47 C 47 73 73 C C B . n B 2 48 G 48 74 74 G G B . n C 1 1 C 1 1 1 C C C . n C 1 2 G 2 2 2 G G C . n C 1 3 C 3 3 3 C C C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 C 6 6 6 C C C . n C 1 7 A 7 7 7 A A C . n C 1 8 U 8 8 8 U U C . n C 1 9 U 9 9 9 U U C . n C 1 10 A 10 10 10 A A C . n C 1 11 A 11 11 11 A A C . n C 1 12 U 12 12 12 U U C . n C 1 13 G 13 13 13 G G C . n C 1 14 C 14 14 14 C C C . n C 1 15 A 15 15 15 A A C . n C 1 16 G 16 16 16 G G C . n C 1 17 C 17 17 17 C C C . n C 1 18 U 18 18 18 U U C . n C 1 19 U 19 19 19 U U C . n C 1 20 U 20 20 20 U U C . n C 1 21 A 21 21 21 A A C . n C 1 22 U 22 22 22 U U C . n C 1 23 U 23 23 23 U U C . n C 1 24 G 24 24 24 G G C . n C 1 25 C 25 25 25 C C C . n C 1 26 C 26 26 26 C C C . n D 2 1 GTP 1 27 27 GTP GTP D . n D 2 2 G 2 28 28 G G D . n D 2 3 C 3 29 29 C C D . n D 2 4 A 4 30 30 A A D . n D 2 5 A 5 31 31 A A D . n D 2 6 U 6 32 32 U U D . n D 2 7 A 7 33 33 A A D . n D 2 8 A 8 34 34 A A D . n D 2 9 A 9 35 35 A A D . n D 2 10 G 10 36 36 G G D . n D 2 11 C 11 37 37 C C D . n D 2 12 G 12 38 38 G G D . n D 2 13 G 13 39 39 G G D . n D 2 14 U 14 40 40 U U D . n D 2 15 U 15 41 41 U U D . n D 2 16 A 16 42 42 A A D . n D 2 17 C 17 43 43 C C D . n D 2 18 A 18 44 44 A A D . n D 2 19 A 19 45 45 A A D . n D 2 20 G 20 46 46 G G D . n D 2 21 C 21 47 47 C C D . n D 2 22 C 22 48 48 C C D . n D 2 23 C 23 49 49 C C D . n D 2 24 G 24 50 50 G G D . n D 2 25 C 25 51 51 C C D . n D 2 26 A 26 52 52 A A D . n D 2 27 A 27 53 53 A A D . n D 2 28 A 28 54 54 A A D . n D 2 29 A 29 55 55 A A D . n D 2 30 A 30 56 56 A A D . n D 2 31 U 31 57 57 U U D . n D 2 32 A 32 58 58 A A D . n D 2 33 G 33 59 59 G G D . n D 2 34 C 34 60 60 C C D . n D 2 35 A 35 61 61 A A D . n D 2 36 G 36 62 62 G G D . n D 2 37 A 37 63 63 A A D . n D 2 38 G 38 64 64 G G D . n D 2 39 U 39 65 65 U U D . n D 2 40 A 40 66 66 A A D . n D 2 41 A 41 67 67 A A D . n D 2 42 U 42 68 68 U U D . n D 2 43 G 43 69 69 G G D . n D 2 44 U 44 70 70 U U D . n D 2 45 C 45 71 71 C C D . n D 2 46 G 46 72 72 G G D . n D 2 47 C 47 73 73 C C D . n D 2 48 G 48 74 74 G G D . n E 1 1 C 1 1 1 C C E . n E 1 2 G 2 2 2 G G E . n E 1 3 C 3 3 3 C C E . n E 1 4 G 4 4 4 G G E . n E 1 5 G 5 5 5 G G E . n E 1 6 C 6 6 6 C C E . n E 1 7 A 7 7 7 A A E . n E 1 8 U 8 8 8 U U E . n E 1 9 U 9 9 9 U U E . n E 1 10 A 10 10 10 A A E . n E 1 11 A 11 11 11 A A E . n E 1 12 U 12 12 12 U U E . n E 1 13 G 13 13 13 G G E . n E 1 14 C 14 14 14 C C E . n E 1 15 A 15 15 15 A A E . n E 1 16 G 16 16 16 G G E . n E 1 17 C 17 17 17 C C E . n E 1 18 U 18 18 18 U U E . n E 1 19 U 19 19 19 U U E . n E 1 20 U 20 20 20 U U E . n E 1 21 A 21 21 21 A A E . n E 1 22 U 22 22 22 U U E . n E 1 23 U 23 23 23 U U E . n E 1 24 G 24 24 24 G G E . n E 1 25 C 25 25 25 C C E . n E 1 26 C 26 26 26 C C E . n F 2 1 GTP 1 27 27 GTP GTP F . n F 2 2 G 2 28 28 G G F . n F 2 3 C 3 29 29 C C F . n F 2 4 A 4 30 30 A A F . n F 2 5 A 5 31 31 A A F . n F 2 6 U 6 32 32 U U F . n F 2 7 A 7 33 33 A A F . n F 2 8 A 8 34 34 A A F . n F 2 9 A 9 35 35 A A F . n F 2 10 G 10 36 36 G G F . n F 2 11 C 11 37 37 C C F . n F 2 12 G 12 38 38 G G F . n F 2 13 G 13 39 39 G G F . n F 2 14 U 14 40 40 U U F . n F 2 15 U 15 41 41 U U F . n F 2 16 A 16 42 42 A A F . n F 2 17 C 17 43 43 C C F . n F 2 18 A 18 44 44 A A F . n F 2 19 A 19 45 45 A A F . n F 2 20 G 20 46 46 G G F . n F 2 21 C 21 47 47 C C F . n F 2 22 C 22 48 48 C C F . n F 2 23 C 23 49 49 C C F . n F 2 24 G 24 50 50 G G F . n F 2 25 C 25 51 51 C C F . n F 2 26 A 26 52 52 A A F . n F 2 27 A 27 53 53 A A F . n F 2 28 A 28 54 54 A A F . n F 2 29 A 29 55 55 A A F . n F 2 30 A 30 56 56 A A F . n F 2 31 U 31 57 57 U U F . n F 2 32 A 32 58 58 A A F . n F 2 33 G 33 59 59 G G F . n F 2 34 C 34 60 60 C C F . n F 2 35 A 35 61 61 A A F . n F 2 36 G 36 62 62 G G F . n F 2 37 A 37 63 63 A A F . n F 2 38 G 38 64 64 G G F . n F 2 39 U 39 65 65 U U F . n F 2 40 A 40 66 66 A A F . n F 2 41 A 41 67 67 A A F . n F 2 42 U 42 68 68 U U F . n F 2 43 G 43 69 69 G G F . n F 2 44 U 44 70 70 U U F . n F 2 45 C 45 71 71 C C F . n F 2 46 G 46 72 72 G G F . n F 2 47 C 47 73 73 C C F . n F 2 48 G 48 74 74 G G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG 1 101 2 MG MG B . H 3 MG 1 101 1 MG MG C . I 3 MG 1 102 3 MG MG C . J 3 MG 1 103 4 MG MG C . K 4 HOH 1 201 2 HOH HOH C . K 4 HOH 2 202 3 HOH HOH C . K 4 HOH 3 203 4 HOH HOH C . K 4 HOH 4 204 5 HOH HOH C . K 4 HOH 5 205 1 HOH HOH C . L 4 HOH 1 101 2 HOH HOH E . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 9 ? "O2'" ? A U 9 "O2'" 2 1 Y 1 C U 9 ? "O2'" ? C U 9 "O2'" 3 1 Y 1 E U 9 ? "O2'" ? E U 9 "O2'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 HKL2Map 'model building' . ? 2 REFMAC refinement 5.8.0073 ? 3 XDS 'data reduction' . ? 4 HKL2Map phasing . ? 5 # _cell.entry_id 4QJH _cell.length_a 228.770 _cell.length_b 228.770 _cell.length_c 101.060 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QJH _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4QJH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.31 _exptl_crystal.density_percent_sol 76.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;160 mM sodium citrate, pH 4.6, 700 mM ammonium sulfate, 1 M lithium sulfate, 3% pentaerythriotol ethoxylate (3/4 EO/OH), 3% 6-aminohexanoic acid, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 3 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 PIXEL 'DECTRIS PILATUS 6M-F' 2014-02-21 ? 2 PIXEL 'DECTRIS PILATUS 6M-F' 2014-02-21 ? 3 PIXEL 'DECTRIS PILATUS 6M-F' 2014-02-20 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'cryo-cooled double crystal Si(111)' 'SINGLE WAVELENGTH' x-ray 2 1 M 'cryo-cooled double crystal Si(111)' 'SINGLE WAVELENGTH' x-ray 3 1 M 'cryo-cooled double crystal Si(111)' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.1051 1.0 2 1.8456 1.0 3 1.8445 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 24-ID-C' APS 24-ID-C ? 1.1051 2 SYNCHROTRON 'APS BEAMLINE 24-ID-C' APS 24-ID-C ? 1.8456 3 SYNCHROTRON 'APS BEAMLINE 24-ID-C' APS 24-ID-C ? 1.8445 # _reflns.pdbx_diffrn_id 1,2,3 _reflns.pdbx_ordinal 1 _reflns.entry_id 4QJH _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 198.121 _reflns.d_resolution_high 2.018 _reflns.number_obs 12154 _reflns.number_all 99843 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1,2,3 1 4.1 4.26 100.0 3.85 ? 2.0 40.7 ? ? ? ? ? ? 1,2,3 2 4.26 4.38 100.0 ? ? ? ? ? ? ? ? ? ? 1,2,3 3 4.38 4.52 100.0 ? ? ? ? ? ? ? ? ? ? 1,2,3 4 4.52 4.67 100.0 ? ? ? ? ? ? ? ? ? ? 1,2,3 5 4.67 4.83 100.0 ? ? ? ? ? ? ? ? ? ? 1,2,3 6 4.83 50.0 99.9 ? ? ? ? ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4QJH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14227 _refine.ls_number_reflns_all 14918 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 198.12 _refine.ls_d_res_high 3.88 _refine.ls_percent_reflns_obs 99.40 _refine.ls_R_factor_obs 0.18730 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18525 _refine.ls_R_factor_R_free 0.23224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.0 _refine.ls_number_reflns_R_free 600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 146.821 _refine.aniso_B[1][1] -0.85 _refine.aniso_B[2][2] -0.85 _refine.aniso_B[3][3] 2.75 _refine.aniso_B[1][2] -0.42 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.530 _refine.overall_SU_ML 0.512 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 40.977 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 4764 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 4774 _refine_hist.d_res_high 3.88 _refine_hist.d_res_low 198.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.011 ? 5332 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.349 1.313 ? 8295 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 885 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2307 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 7.200 14.682 ? 5328 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined 20.016 ? ? 10670 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.880 _refine_ls_shell.d_res_low 3.981 _refine_ls_shell.number_reflns_R_work 993 _refine_ls_shell.R_factor_R_work 0.373 _refine_ls_shell.percent_reflns_obs 92.98 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4QJH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4QJH _struct.title ;Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site Ordered at 4.1 A Resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QJH _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'small self-cleaving ribozyme, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4QJH 4QJH 1 1 CGCGGCAUUAAUGCAGCUUUAUUGCC ? 2 PDB 4QJH 4QJH 2 1 '(GTP)GCAAUAAAGCGGUUACAAGCCCGCAAAAAUAGCAGAGUAAUGUCGCG' ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4QJH A 1 ? 26 ? 4QJH 1 ? 26 ? 1 26 2 1 4QJH C 1 ? 26 ? 4QJH 1 ? 26 ? 1 26 3 1 4QJH E 1 ? 26 ? 4QJH 1 ? 26 ? 1 26 4 2 4QJH B 1 ? 48 ? 4QJH 27 ? 74 ? 27 74 5 2 4QJH D 1 ? 48 ? 4QJH 27 ? 74 ? 27 74 6 2 4QJH F 1 ? 48 ? 4QJH 27 ? 74 ? 27 74 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3600 ? 1 MORE -5 ? 1 'SSA (A^2)' 12040 ? 2 'ABSA (A^2)' 3860 ? 2 MORE -25 ? 2 'SSA (A^2)' 12160 ? 3 'ABSA (A^2)' 3640 ? 3 MORE -8 ? 3 'SSA (A^2)' 12300 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G 2 1 C,D,H,I,J,K 3 1 E,F,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 27 B G 28 1_555 ? ? ? ? ? ? ? 1.491 ? ? covale2 covale both ? D GTP 1 "O3'" ? ? ? 1_555 D G 2 P ? ? D GTP 27 D G 28 1_555 ? ? ? ? ? ? ? 1.495 ? ? covale3 covale both ? F GTP 1 "O3'" ? ? ? 1_555 F G 2 P ? ? F GTP 27 F G 28 1_555 ? ? ? ? ? ? ? 1.492 ? ? metalc1 metalc ? ? C A 11 OP1 ? ? ? 1_555 J MG . MG ? ? C A 11 C MG 103 1_555 ? ? ? ? ? ? ? 1.865 ? ? metalc2 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 101 C HOH 201 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc3 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 101 C HOH 202 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 101 C HOH 203 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc5 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 101 C HOH 204 1_555 ? ? ? ? ? ? ? 2.189 ? ? hydrog1 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 48 N1 ? ? A C 1 B G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 47 N3 ? ? A G 2 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 47 O2 ? ? A G 2 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 47 N4 ? ? A G 2 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 46 N1 ? ? A C 3 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 46 O6 ? ? A C 3 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 46 N2 ? ? A C 3 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 45 N3 ? ? A G 4 B C 71 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 B U 44 O2 ? ? A G 5 B U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 5 O6 ? ? ? 1_555 B U 44 N3 ? ? A G 5 B U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 43 N1 ? ? A C 6 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 43 O6 ? ? A C 6 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 43 N2 ? ? A C 6 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 42 N3 ? ? A A 7 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 42 O4 ? ? A A 7 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 41 N1 ? ? A U 8 B A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 41 N6 ? ? A U 8 B A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 35 N1 ? ? A U 12 B A 61 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog19 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 34 N3 ? ? A G 13 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 34 O2 ? ? A G 13 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 34 N4 ? ? A G 13 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 33 N1 ? ? A C 14 B G 59 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog23 hydrog ? ? A A 15 N1 ? ? ? 1_555 B U 31 N3 ? ? A A 15 B U 57 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog24 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 16 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 16 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 16 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 20 N1 ? ? A C 17 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 20 O6 ? ? A C 17 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 20 N2 ? ? A C 17 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 19 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 19 B A 34 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog31 hydrog ? ? A U 19 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 19 B A 35 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog32 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 21 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 21 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 22 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 22 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 22 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 22 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 23 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 23 B A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog37 hydrog ? ? A G 24 N1 ? ? ? 1_555 B C 3 O2 ? ? A G 24 B C 29 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog38 hydrog ? ? A C 25 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 25 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 25 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 25 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 25 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 25 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 26 O2 ? ? ? 1_555 B GTP 1 N1 ? ? A C 26 B GTP 27 1_555 ? ? ? ? ? ? 'C-GTP PAIR' ? ? ? hydrog42 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 25 N3 ? ? B G 36 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 25 O2 ? ? B G 36 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 25 N4 ? ? B G 36 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 37 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 37 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 37 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 23 N3 ? ? B G 38 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 23 O2 ? ? B G 38 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 38 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 13 N1 ? ? ? 1_555 B A 19 N1 ? ? B G 39 B A 45 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog52 hydrog ? ? B G 13 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 39 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 13 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 39 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 13 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 39 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B U 14 N3 ? ? ? 1_555 B A 19 N1 ? ? B U 40 B A 45 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog56 hydrog ? ? B U 14 O2 ? ? ? 1_555 B A 19 N6 ? ? B U 40 B A 45 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog57 hydrog ? ? B U 15 O4 ? ? ? 1_555 B A 40 N6 ? ? B U 41 B A 66 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog58 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 39 N3 ? ? B A 42 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 39 O4 ? ? B A 42 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 17 N4 ? ? ? 1_555 B G 38 O6 ? ? B C 43 B G 64 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog61 hydrog ? ? B A 18 N1 ? ? ? 1_555 B A 37 N6 ? ? B A 44 B A 63 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog62 hydrog ? ? B A 18 N6 ? ? ? 1_555 B A 37 N1 ? ? B A 44 B A 63 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog63 hydrog ? ? B A 18 N6 ? ? ? 1_555 B G 38 O6 ? ? B A 44 B G 64 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog64 hydrog ? ? B G 20 N2 ? ? ? 1_555 B A 30 N3 ? ? B G 46 B A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog65 hydrog ? ? B G 36 N2 ? ? ? 1_555 B A 37 N7 ? ? B G 62 B A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog66 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 48 N1 ? ? C C 1 D G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog67 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 47 N3 ? ? C G 2 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 47 O2 ? ? C G 2 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 47 N4 ? ? C G 2 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 46 N1 ? ? C C 3 D G 72 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog71 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 45 N3 ? ? C G 4 D C 71 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog72 hydrog ? ? C G 5 N1 ? ? ? 1_555 D U 44 O2 ? ? C G 5 D U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? C G 5 O6 ? ? ? 1_555 D U 44 N3 ? ? C G 5 D U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 43 N1 ? ? C C 6 D G 69 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog75 hydrog ? ? C A 7 N1 ? ? ? 1_555 D U 42 N3 ? ? C A 7 D U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C A 7 N6 ? ? ? 1_555 D U 42 O4 ? ? C A 7 D U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 41 N1 ? ? C U 8 D A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 41 N6 ? ? C U 8 D A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C A 10 N6 ? ? ? 1_555 D U 14 O2 ? ? C A 10 D U 40 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog80 hydrog ? ? C A 11 N7 ? ? ? 1_555 D G 36 N2 ? ? C A 11 D G 62 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog81 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 34 N3 ? ? C G 13 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 34 O2 ? ? C G 13 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 34 N4 ? ? C G 13 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C C 14 N3 ? ? ? 1_555 D G 33 N1 ? ? C C 14 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 14 N4 ? ? ? 1_555 D G 33 O6 ? ? C C 14 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 14 O2 ? ? ? 1_555 D G 33 N2 ? ? C C 14 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C A 15 N1 ? ? ? 1_555 D U 31 N3 ? ? C A 15 D U 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C A 15 N6 ? ? ? 1_555 D U 31 O4 ? ? C A 15 D U 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 16 D C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 16 D C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 16 D C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C C 17 O2 ? ? ? 1_555 D G 20 N1 ? ? C C 17 D G 46 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog93 hydrog ? ? C U 18 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 18 D A 35 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog94 hydrog ? ? C U 19 N3 ? ? ? 1_555 D A 8 N1 ? ? C U 19 D A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C U 19 O4 ? ? ? 1_555 D A 8 N6 ? ? C U 19 D A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C U 20 N3 ? ? ? 1_555 D A 7 N1 ? ? C U 20 D A 33 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog97 hydrog ? ? C A 21 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 21 D U 32 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog98 hydrog ? ? C U 22 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 22 D A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C U 22 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 22 D A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? C U 23 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 23 D A 31 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog101 hydrog ? ? C G 24 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 24 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? C G 24 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 24 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? C G 24 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 24 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? C C 25 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 25 D G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog105 hydrog ? ? C C 26 O2 ? ? ? 1_555 D GTP 1 N1 ? ? C C 26 D GTP 27 1_555 ? ? ? ? ? ? 'C-GTP PAIR' ? ? ? hydrog106 hydrog ? ? C C 26 O2 ? ? ? 1_555 D G 2 N1 ? ? C C 26 D G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog107 hydrog ? ? D G 10 N1 ? ? ? 1_555 D C 25 N3 ? ? D G 36 D C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? D G 10 N2 ? ? ? 1_555 D C 25 O2 ? ? D G 36 D C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? D G 10 O6 ? ? ? 1_555 D C 25 N4 ? ? D G 36 D C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? D C 11 O2 ? ? ? 1_555 D G 24 N2 ? ? D C 37 D G 50 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog111 hydrog ? ? D G 12 N1 ? ? ? 1_555 D C 23 N3 ? ? D G 38 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? D G 12 N2 ? ? ? 1_555 D C 23 O2 ? ? D G 38 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? D G 12 O6 ? ? ? 1_555 D C 23 N4 ? ? D G 38 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? D G 13 N1 ? ? ? 1_555 D C 22 N3 ? ? D G 39 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? D G 13 N2 ? ? ? 1_555 D C 22 O2 ? ? D G 39 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? D G 13 O6 ? ? ? 1_555 D C 22 N4 ? ? D G 39 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? D U 14 N3 ? ? ? 1_555 D A 19 N7 ? ? D U 40 D A 45 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog118 hydrog ? ? D U 14 O2 ? ? ? 1_555 D A 19 N6 ? ? D U 40 D A 45 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog119 hydrog ? ? D U 15 N3 ? ? ? 1_555 D A 40 N1 ? ? D U 41 D A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? D U 15 O4 ? ? ? 1_555 D A 40 N6 ? ? D U 41 D A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? D A 16 N1 ? ? ? 1_555 D U 39 N3 ? ? D A 42 D U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? D A 16 N6 ? ? ? 1_555 D U 39 O4 ? ? D A 42 D U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? D C 17 N4 ? ? ? 1_555 D G 38 O6 ? ? D C 43 D G 64 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog124 hydrog ? ? D A 18 N6 ? ? ? 1_555 D A 37 N1 ? ? D A 44 D A 63 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog125 hydrog ? ? D G 36 N2 ? ? ? 1_555 D A 37 N7 ? ? D G 62 D A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog126 hydrog ? ? E C 1 O2 ? ? ? 1_555 F G 48 N1 ? ? E C 1 F G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog127 hydrog ? ? E G 2 N1 ? ? ? 1_555 F C 47 N3 ? ? E G 2 F C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? E G 2 N2 ? ? ? 1_555 F C 47 O2 ? ? E G 2 F C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? E G 2 O6 ? ? ? 1_555 F C 47 N4 ? ? E G 2 F C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? E C 3 N3 ? ? ? 1_555 F G 46 N1 ? ? E C 3 F G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? E C 3 N4 ? ? ? 1_555 F G 46 O6 ? ? E C 3 F G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? E C 3 O2 ? ? ? 1_555 F G 46 N2 ? ? E C 3 F G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? E G 4 N1 ? ? ? 1_555 F C 45 N3 ? ? E G 4 F C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? E G 4 N2 ? ? ? 1_555 F C 45 O2 ? ? E G 4 F C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? E G 4 O6 ? ? ? 1_555 F C 45 N4 ? ? E G 4 F C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? E G 5 N1 ? ? ? 1_555 F U 44 O2 ? ? E G 5 F U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog137 hydrog ? ? E G 5 O6 ? ? ? 1_555 F U 44 N3 ? ? E G 5 F U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog138 hydrog ? ? E C 6 O2 ? ? ? 1_555 F G 43 N2 ? ? E C 6 F G 69 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog139 hydrog ? ? E A 7 N1 ? ? ? 1_555 F U 42 N3 ? ? E A 7 F U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? E A 7 N6 ? ? ? 1_555 F U 42 O4 ? ? E A 7 F U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? E U 8 N3 ? ? ? 1_555 F A 41 N1 ? ? E U 8 F A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? E U 8 O4 ? ? ? 1_555 F A 41 N6 ? ? E U 8 F A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? E A 10 N6 ? ? ? 1_555 F U 14 O4 ? ? E A 10 F U 40 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog144 hydrog ? ? E A 11 N6 ? ? ? 1_555 F G 36 N3 ? ? E A 11 F G 62 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog145 hydrog ? ? E A 11 N7 ? ? ? 1_555 F G 36 N2 ? ? E A 11 F G 62 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog146 hydrog ? ? E G 13 N1 ? ? ? 1_555 F C 34 N3 ? ? E G 13 F C 60 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog147 hydrog ? ? E C 14 N3 ? ? ? 1_555 F G 33 N1 ? ? E C 14 F G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? E C 14 N4 ? ? ? 1_555 F G 33 O6 ? ? E C 14 F G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? E C 14 O2 ? ? ? 1_555 F G 33 N2 ? ? E C 14 F G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? E A 15 N1 ? ? ? 1_555 F U 31 N3 ? ? E A 15 F U 57 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog151 hydrog ? ? E G 16 N1 ? ? ? 1_555 F C 21 N3 ? ? E G 16 F C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? E G 16 N2 ? ? ? 1_555 F C 21 O2 ? ? E G 16 F C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? E G 16 O6 ? ? ? 1_555 F C 21 N4 ? ? E G 16 F C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? E C 17 N3 ? ? ? 1_555 F G 20 N1 ? ? E C 17 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? E C 17 N4 ? ? ? 1_555 F G 20 O6 ? ? E C 17 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? E C 17 O2 ? ? ? 1_555 F G 20 N2 ? ? E C 17 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? E U 19 N3 ? ? ? 1_555 F A 8 N1 ? ? E U 19 F A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? E U 19 O4 ? ? ? 1_555 F A 8 N6 ? ? E U 19 F A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? E U 20 N3 ? ? ? 1_555 F A 7 N1 ? ? E U 20 F A 33 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog160 hydrog ? ? E A 21 N1 ? ? ? 1_555 F U 6 N3 ? ? E A 21 F U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? E A 21 N6 ? ? ? 1_555 F U 6 O4 ? ? E A 21 F U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? E U 23 N3 ? ? ? 1_555 F A 4 N1 ? ? E U 23 F A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? E U 23 O4 ? ? ? 1_555 F A 4 N6 ? ? E U 23 F A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? E U 23 N3 ? ? ? 1_555 F A 5 N1 ? ? E U 23 F A 31 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog165 hydrog ? ? E G 24 N1 ? ? ? 1_555 F C 3 O2 ? ? E G 24 F C 29 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog166 hydrog ? ? E C 25 O2 ? ? ? 1_555 F G 2 N2 ? ? E C 25 F G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog167 hydrog ? ? E C 26 O2 ? ? ? 1_555 F GTP 1 N2 ? ? E C 26 F GTP 27 1_555 ? ? ? ? ? ? 'C-GTP PAIR' ? ? ? hydrog168 hydrog ? ? F G 10 N1 ? ? ? 1_555 F C 25 O2 ? ? F G 36 F C 51 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog169 hydrog ? ? F C 11 N3 ? ? ? 1_555 F G 24 N1 ? ? F C 37 F G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? F C 11 N4 ? ? ? 1_555 F G 24 O6 ? ? F C 37 F G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? F C 11 O2 ? ? ? 1_555 F G 24 N2 ? ? F C 37 F G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? F G 12 N1 ? ? ? 1_555 F C 23 N3 ? ? F G 38 F C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? F G 12 N2 ? ? ? 1_555 F C 23 O2 ? ? F G 38 F C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog174 hydrog ? ? F G 12 O6 ? ? ? 1_555 F C 23 N4 ? ? F G 38 F C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog175 hydrog ? ? F G 13 N1 ? ? ? 1_555 F C 22 N3 ? ? F G 39 F C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog176 hydrog ? ? F G 13 N2 ? ? ? 1_555 F C 22 O2 ? ? F G 39 F C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog177 hydrog ? ? F G 13 O6 ? ? ? 1_555 F C 22 N4 ? ? F G 39 F C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog178 hydrog ? ? F U 14 N3 ? ? ? 1_555 F A 19 N7 ? ? F U 40 F A 45 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog179 hydrog ? ? F U 14 O2 ? ? ? 1_555 F A 19 N6 ? ? F U 40 F A 45 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog180 hydrog ? ? F U 15 O4 ? ? ? 1_555 F A 40 N6 ? ? F U 41 F A 66 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog181 hydrog ? ? F A 16 N1 ? ? ? 1_555 F U 39 N3 ? ? F A 42 F U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog182 hydrog ? ? F A 16 N6 ? ? ? 1_555 F U 39 O4 ? ? F A 42 F U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog183 hydrog ? ? F C 17 N3 ? ? ? 1_555 F G 38 N1 ? ? F C 43 F G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog184 hydrog ? ? F C 17 N4 ? ? ? 1_555 F G 38 O6 ? ? F C 43 F G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog185 hydrog ? ? F C 17 O2 ? ? ? 1_555 F G 38 N2 ? ? F C 43 F G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog186 hydrog ? ? F A 18 N1 ? ? ? 1_555 F A 37 N6 ? ? F A 44 F A 63 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog187 hydrog ? ? F A 18 N6 ? ? ? 1_555 F A 37 N1 ? ? F A 44 F A 63 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog188 hydrog ? ? F A 18 N6 ? ? ? 1_555 F G 38 O6 ? ? F A 44 F G 64 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog189 hydrog ? ? F G 20 N2 ? ? ? 1_555 F A 30 N3 ? ? F G 46 F A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? K HOH . ? C HOH 201 ? 1_555 MG ? H MG . ? C MG 101 ? 1_555 O ? K HOH . ? C HOH 202 ? 1_555 90.8 ? 2 O ? K HOH . ? C HOH 201 ? 1_555 MG ? H MG . ? C MG 101 ? 1_555 O ? K HOH . ? C HOH 203 ? 1_555 87.4 ? 3 O ? K HOH . ? C HOH 202 ? 1_555 MG ? H MG . ? C MG 101 ? 1_555 O ? K HOH . ? C HOH 203 ? 1_555 89.4 ? 4 O ? K HOH . ? C HOH 201 ? 1_555 MG ? H MG . ? C MG 101 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 93.0 ? 5 O ? K HOH . ? C HOH 202 ? 1_555 MG ? H MG . ? C MG 101 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 89.8 ? 6 O ? K HOH . ? C HOH 203 ? 1_555 MG ? H MG . ? C MG 101 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 179.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 2 'BINDING SITE FOR RESIDUE MG B 101' AC2 Software C MG 101 ? 5 'BINDING SITE FOR RESIDUE MG C 101' AC3 Software C MG 102 ? 1 'BINDING SITE FOR RESIDUE MG C 102' AC4 Software C MG 103 ? 3 'BINDING SITE FOR RESIDUE MG C 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GTP B 1 ? GTP B 27 . ? 1_555 ? 2 AC1 2 GTP B 1 ? GTP B 27 . ? 12_556 ? 3 AC2 5 C C 17 ? C C 17 . ? 1_555 ? 4 AC2 5 HOH K . ? HOH C 201 . ? 1_555 ? 5 AC2 5 HOH K . ? HOH C 202 . ? 1_555 ? 6 AC2 5 HOH K . ? HOH C 203 . ? 1_555 ? 7 AC2 5 HOH K . ? HOH C 204 . ? 1_555 ? 8 AC3 1 C C 14 ? C C 14 . ? 1_555 ? 9 AC4 3 A C 10 ? A C 10 . ? 1_555 ? 10 AC4 3 A C 11 ? A C 11 . ? 1_555 ? 11 AC4 3 U C 12 ? U C 12 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 B U 40 ? ? "O2'" D U 70 ? ? 1.95 2 1 O2 A C 17 ? ? "O2'" B A 56 ? ? 2.13 3 1 N3 D C 43 ? ? O6 D G 64 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 A _pdbx_validate_symm_contact.auth_seq_id_1 53 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 53 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_556 _pdbx_validate_symm_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B GTP 27 ? ? P B G 28 ? ? 1.491 1.607 -0.116 0.012 Y 2 1 "O3'" C A 10 ? ? P C A 11 ? ? 1.533 1.607 -0.074 0.012 Y 3 1 "O3'" D GTP 27 ? ? P D G 28 ? ? 1.495 1.607 -0.112 0.012 Y 4 1 "O3'" F GTP 27 ? ? P F G 28 ? ? 1.492 1.607 -0.115 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B GTP 27 ? ? "O3'" B GTP 27 ? ? P B G 28 ? ? 139.85 119.70 20.15 1.20 Y 2 1 "O3'" B GTP 27 ? ? P B G 28 ? ? "O5'" B G 28 ? ? 141.71 104.00 37.71 1.90 Y 3 1 "O3'" B GTP 27 ? ? P B G 28 ? ? OP2 B G 28 ? ? 82.93 105.20 -22.27 2.20 Y 4 1 "O5'" C A 10 ? ? P C A 10 ? ? OP2 C A 10 ? ? 99.50 105.70 -6.20 0.90 N 5 1 "C2'" C A 15 ? ? "C3'" C A 15 ? ? "O3'" C A 15 ? ? 124.16 113.70 10.46 1.60 N 6 1 "C3'" D GTP 27 ? ? "O3'" D GTP 27 ? ? P D G 28 ? ? 108.21 119.70 -11.49 1.20 Y 7 1 "O3'" D GTP 27 ? ? P D G 28 ? ? OP2 D G 28 ? ? 140.53 110.50 30.03 1.10 Y 8 1 "O3'" D GTP 27 ? ? P D G 28 ? ? OP1 D G 28 ? ? 77.07 105.20 -28.13 2.20 Y 9 1 "C2'" D A 35 ? ? "C3'" D A 35 ? ? "O3'" D A 35 ? ? 123.91 113.70 10.21 1.60 N 10 1 "O3'" F GTP 27 ? ? P F G 28 ? ? OP2 F G 28 ? ? 133.28 110.50 22.78 1.10 Y 11 1 "O3'" F GTP 27 ? ? P F G 28 ? ? OP1 F G 28 ? ? 75.22 105.20 -29.98 2.20 Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B GTP 1 B GTP 27 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 D GTP 1 D GTP 27 ? G "GUANOSINE-5'-TRIPHOSPHATE" 3 F GTP 1 F GTP 27 ? G "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B MG 101 ? G MG . 2 1 E HOH 101 ? L HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4QJH 'double helix' 4QJH 'a-form double helix' 4QJH 'bulge loop' 4QJH 'mismatched base pair' 4QJH 'triple helix' 4QJH 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 9 1_555 D A 32 1_555 1.388 -0.844 -2.094 38.188 -21.289 -141.880 1 A_U9:A58_D A 9 ? D 58 ? ? ? 1 A U 12 1_555 B A 35 1_555 -1.584 -0.190 0.371 7.197 -36.403 16.489 2 A_U12:A61_B A 12 ? B 61 ? ? 1 1 A G 13 1_555 B C 34 1_555 -0.137 0.085 0.061 -3.397 -16.342 -5.826 3 A_G13:C60_B A 13 ? B 60 ? 19 1 1 A C 14 1_555 B G 33 1_555 3.505 -1.472 0.612 -10.588 -12.963 -3.507 4 A_C14:G59_B A 14 ? B 59 ? ? ? 1 A A 15 1_555 B U 31 1_555 0.225 0.660 0.311 -1.160 7.139 32.667 5 A_A15:U57_B A 15 ? B 57 ? ? 1 1 A G 16 1_555 B C 21 1_555 0.434 -0.375 -0.080 -3.503 -22.943 7.703 6 A_G16:C47_B A 16 ? B 47 ? 19 1 1 A C 17 1_555 B G 20 1_555 -1.184 -0.218 -0.521 1.272 -8.629 -5.457 7 A_C17:G46_B A 17 ? B 46 ? 19 1 1 A U 19 1_555 B A 9 1_555 -0.620 -0.052 1.932 31.186 -3.639 45.944 8 A_U19:A35_B A 19 ? B 35 ? ? 1 1 A A 21 1_555 B U 6 1_555 0.869 0.273 -1.438 -40.367 -26.062 -11.043 9 A_A21:U32_B A 21 ? B 32 ? 20 1 1 A U 22 1_555 B A 5 1_555 0.596 -0.365 -0.860 9.268 -14.669 1.045 10 A_U22:A31_B A 22 ? B 31 ? 20 1 1 A U 23 1_555 B A 4 1_555 -0.055 0.581 0.611 -3.856 0.929 34.429 11 A_U23:A30_B A 23 ? B 30 ? ? 1 1 A G 24 1_555 B C 3 1_555 -3.323 1.208 -0.573 -3.219 -14.770 61.337 12 A_G24:C29_B A 24 ? B 29 ? ? 5 1 A C 25 1_555 B G 2 1_555 0.954 -0.226 -1.936 36.523 -22.619 27.579 13 A_C25:G28_B A 25 ? B 28 ? ? 1 1 A C 26 1_555 B GTP 1 1_555 2.106 -1.155 -1.672 -35.441 16.065 3.539 14 A_C26:GTP27_B A 26 ? B 27 ? ? 1 1 B C 11 1_555 B G 24 1_555 0.105 -0.257 -0.464 5.353 -21.509 -1.454 15 B_C37:G50_B B 37 ? B 50 ? 19 1 1 B G 12 1_555 B C 23 1_555 -0.186 -0.478 -0.509 -11.449 -5.684 -4.200 16 B_G38:C49_B B 38 ? B 49 ? 19 1 1 B G 13 1_555 B C 22 1_555 0.990 -0.052 0.895 3.074 8.611 -5.565 17 B_G39:C48_B B 39 ? B 48 ? 19 1 1 B U 14 1_555 B A 19 1_555 -0.726 -1.896 1.248 -11.463 -8.172 -172.633 18 B_U40:A45_B B 40 ? B 45 ? 21 2 1 B A 37 1_555 B A 18 1_555 1.226 -0.266 0.185 -30.006 -1.453 -170.072 19 B_A63:A44_B B 63 ? B 44 ? 1 2 1 B G 38 1_555 B C 17 1_555 0.394 -0.090 0.094 4.059 13.844 -6.353 20 B_G64:C43_B B 64 ? B 43 ? 19 1 1 B U 39 1_555 B A 16 1_555 2.430 -1.009 -0.698 -1.147 1.113 1.413 21 B_U65:A42_B B 65 ? B 42 ? 20 1 1 B A 40 1_555 B U 15 1_555 2.205 -0.178 0.835 26.961 12.102 -7.085 22 B_A66:U41_B B 66 ? B 41 ? 20 1 1 B A 41 1_555 A U 8 1_555 -0.770 0.145 0.845 7.997 6.942 -0.864 23 B_A67:U8_A B 67 ? A 8 ? 20 1 1 B U 42 1_555 A A 7 1_555 0.463 -0.093 -1.189 24.283 -12.737 2.901 24 B_U68:A7_A B 68 ? A 7 ? 20 1 1 B G 43 1_555 A C 6 1_555 -0.024 0.312 -0.002 -1.604 6.758 10.815 25 B_G69:C6_A B 69 ? A 6 ? ? 1 1 B U 44 1_555 A G 5 1_555 2.738 -0.415 -0.041 -1.732 -2.709 7.588 26 B_U70:G5_A B 70 ? A 5 ? 28 1 1 B C 45 1_555 A G 4 1_555 0.172 0.352 0.806 -4.773 -8.898 7.155 27 B_C71:G4_A B 71 ? A 4 ? ? 1 1 B G 46 1_555 A C 3 1_555 -0.989 0.040 -0.580 0.692 -1.572 3.508 28 B_G72:C3_A B 72 ? A 3 ? 19 1 1 B C 47 1_555 A G 2 1_555 1.463 -0.528 -0.654 -2.809 -3.569 -7.803 29 B_C73:G2_A B 73 ? A 2 ? 19 1 1 B G 48 1_555 A C 1 1_555 -3.012 -0.679 0.002 -8.794 -12.454 4.784 30 B_G74:C1_A B 74 ? A 1 ? ? ? 1 E C 1 1_555 F G 48 1_555 2.865 -0.924 -0.587 14.399 -17.619 3.124 31 E_C1:G74_F E 1 ? F 74 ? ? ? 1 E G 2 1_555 F C 47 1_555 -0.827 -0.230 -0.198 6.463 -4.869 1.157 32 E_G2:C73_F E 2 ? F 73 ? 19 1 1 E C 3 1_555 F G 46 1_555 0.508 -0.478 -1.160 11.770 -8.130 -3.493 33 E_C3:G72_F E 3 ? F 72 ? 19 1 1 E G 4 1_555 F C 45 1_555 -0.307 0.025 0.328 1.882 -7.052 4.576 34 E_G4:C71_F E 4 ? F 71 ? 19 1 1 E G 5 1_555 F U 44 1_555 -2.471 -0.463 0.269 4.840 -7.867 4.226 35 E_G5:U70_F E 5 ? F 70 ? 28 1 1 E C 6 1_555 F G 43 1_555 -0.718 0.208 0.116 1.373 4.953 10.899 36 E_C6:G69_F E 6 ? F 69 ? ? 1 1 E A 7 1_555 F U 42 1_555 0.517 0.191 -0.105 4.580 1.481 10.013 37 E_A7:U68_F E 7 ? F 68 ? ? ? 1 E U 8 1_555 F A 41 1_555 -0.022 0.002 1.315 -10.630 20.582 10.539 38 E_U8:A67_F E 8 ? F 67 ? 20 1 1 F U 15 1_555 F A 40 1_555 -1.046 0.727 0.481 -23.378 18.366 -8.741 39 F_U41:A66_F F 41 ? F 66 ? ? ? 1 F A 16 1_555 F U 39 1_555 -2.488 -1.642 -1.734 -7.334 -11.660 -16.106 40 F_A42:U65_F F 42 ? F 65 ? ? 1 1 F C 17 1_555 F G 38 1_555 0.301 -0.105 0.006 -9.588 13.376 -15.386 41 F_C43:G64_F F 43 ? F 64 ? ? 1 1 F A 18 1_555 F A 37 1_555 -1.618 -1.176 0.664 14.975 -16.014 174.199 42 F_A44:A63_F F 44 ? F 63 ? 1 2 1 E A 11 1_555 F G 36 1_555 -6.468 -3.494 0.330 17.906 -16.119 11.283 43 E_A11:G62_F E 11 ? F 62 ? 11 5 1 E G 13 1_555 F C 34 1_555 -0.734 -0.152 -0.807 17.077 -25.989 -10.579 44 E_G13:C60_F E 13 ? F 60 ? ? 1 1 E C 14 1_555 F G 33 1_555 1.349 -0.316 -0.744 9.091 -25.016 1.952 45 E_C14:G59_F E 14 ? F 59 ? 19 1 1 E A 15 1_555 F U 31 1_555 0.995 -0.139 0.512 -0.874 0.592 16.516 46 E_A15:U57_F E 15 ? F 57 ? 20 1 1 E G 16 1_555 F C 21 1_555 0.935 -0.215 0.169 10.907 -7.886 3.168 47 E_G16:C47_F E 16 ? F 47 ? 19 1 1 E C 17 1_555 F G 20 1_555 -0.040 -0.159 0.287 -7.858 -13.678 4.467 48 E_C17:G46_F E 17 ? F 46 ? 19 1 1 E U 19 1_555 F A 8 1_555 -0.706 0.184 0.010 5.554 -4.274 5.952 49 E_U19:A34_F E 19 ? F 34 ? 20 1 1 E U 20 1_555 F A 7 1_555 0.468 0.561 -0.351 22.195 -14.203 19.777 50 E_U20:A33_F E 20 ? F 33 ? ? 1 1 E A 21 1_555 F U 6 1_555 -0.336 -0.353 -1.819 -9.197 -12.687 -16.619 51 E_A21:U32_F E 21 ? F 32 ? 20 1 1 E U 23 1_555 F A 4 1_555 0.592 -0.234 -0.739 2.122 5.995 -9.809 52 E_U23:A30_F E 23 ? F 30 ? 20 1 1 E G 24 1_555 F C 3 1_555 -4.306 -0.096 0.468 1.365 -22.688 32.084 53 E_G24:C29_F E 24 ? F 29 ? ? ? 1 E C 25 1_555 F G 2 1_555 0.862 0.392 -0.418 28.278 -10.248 7.330 54 E_C25:G28_F E 25 ? F 28 ? ? 1 1 E C 26 1_555 F GTP 1 1_555 -0.582 0.404 -1.195 16.355 0.972 15.524 55 E_C26:GTP27_F E 26 ? F 27 ? ? 1 1 C C 1 1_555 D G 48 1_555 2.350 -0.114 0.545 5.913 12.629 31.389 56 C_C1:G74_D C 1 ? D 74 ? ? 1 1 C G 2 1_555 D C 47 1_555 -0.183 -0.170 1.032 19.820 -9.271 -0.154 57 C_G2:C73_D C 2 ? D 73 ? 19 1 1 C C 3 1_555 D G 46 1_555 1.825 -0.120 0.222 9.897 -34.130 22.278 58 C_C3:G72_D C 3 ? D 72 ? ? 1 1 C G 4 1_555 D C 45 1_555 -0.389 0.312 0.815 3.129 -22.159 11.674 59 C_G4:C71_D C 4 ? D 71 ? ? 1 1 C G 5 1_555 D U 44 1_555 -2.576 -0.722 -0.553 1.754 -9.360 -0.849 60 C_G5:U70_D C 5 ? D 70 ? 28 1 1 C C 6 1_555 D G 43 1_555 1.513 -0.101 -0.759 1.528 -6.696 15.305 61 C_C6:G69_D C 6 ? D 69 ? ? 1 1 C A 7 1_555 D U 42 1_555 -0.572 -0.376 1.275 3.175 14.188 3.370 62 C_A7:U68_D C 7 ? D 68 ? 20 1 1 C U 8 1_555 D A 41 1_555 0.605 -0.254 1.525 7.384 8.189 10.984 63 C_U8:A67_D C 8 ? D 67 ? 20 1 1 D U 15 1_555 D A 40 1_555 -1.613 0.451 0.934 -33.030 18.351 -19.851 64 D_U41:A66_D D 41 ? D 66 ? ? ? 1 D A 16 1_555 D U 39 1_555 -3.105 -1.039 0.816 -4.317 5.960 4.734 65 D_A42:U65_D D 42 ? D 65 ? ? ? 1 D C 17 1_555 D G 38 1_555 0.028 1.803 0.239 -16.213 -1.812 -120.965 66 D_C43:G64_D D 43 ? D 64 ? ? ? 1 D A 18 1_555 D A 37 1_555 -0.950 0.020 -0.211 19.840 -9.959 166.377 67 D_A44:A63_D D 44 ? D 63 ? 1 2 1 C A 11 1_555 D G 36 1_555 -7.218 -3.684 0.314 27.699 -2.237 -16.826 68 C_A11:G62_D C 11 ? D 62 ? ? ? 1 C G 13 1_555 D C 34 1_555 0.075 -0.184 -0.213 7.208 -6.778 -0.655 69 C_G13:C60_D C 13 ? D 60 ? 19 1 1 C C 14 1_555 D G 33 1_555 1.431 -1.049 -1.812 28.450 -22.073 7.144 70 C_C14:G59_D C 14 ? D 59 ? 19 1 1 C A 15 1_555 D U 31 1_555 0.994 -0.263 0.475 7.564 7.077 -11.404 71 C_A15:U57_D C 15 ? D 57 ? 20 1 1 C G 16 1_555 D C 21 1_555 -0.771 -0.279 0.690 11.975 -16.320 -0.776 72 C_G16:C47_D C 16 ? D 47 ? 19 1 1 C C 17 1_555 D G 20 1_555 0.888 0.106 -0.189 12.860 -22.194 8.966 73 C_C17:G46_D C 17 ? D 46 ? ? 1 1 C U 18 1_555 D A 9 1_555 -0.524 0.159 0.804 -17.181 3.226 16.959 74 C_U18:A35_D C 18 ? D 35 ? ? 1 1 C U 19 1_555 D A 8 1_555 0.247 -0.029 0.127 0.043 4.108 5.996 75 C_U19:A34_D C 19 ? D 34 ? 20 1 1 C U 20 1_555 D A 7 1_555 -0.374 0.289 0.408 5.553 2.316 8.463 76 C_U20:A33_D C 20 ? D 33 ? ? ? 1 C A 21 1_555 D U 6 1_555 0.363 0.298 -0.258 -2.207 -19.976 9.361 77 C_A21:U32_D C 21 ? D 32 ? ? ? 1 C U 22 1_555 D A 5 1_555 0.155 -0.107 -0.483 0.263 -28.750 9.234 78 C_U22:A31_D C 22 ? D 31 ? 20 1 1 C G 24 1_555 D C 3 1_555 0.256 -0.331 -0.575 -10.960 -2.988 -0.412 79 C_G24:C29_D C 24 ? D 29 ? 19 1 1 C C 26 1_555 D GTP 1 1_555 1.163 0.338 -1.236 43.795 -29.587 18.204 80 C_C26:GTP27_D C 26 ? D 27 ? ? 1 1 D G 10 1_555 D C 25 1_555 -0.286 -0.270 1.408 24.038 6.806 -12.038 81 D_G36:C51_D D 36 ? D 51 ? 19 1 1 D C 11 1_555 D G 24 1_555 -0.182 0.426 -0.146 18.704 2.532 19.082 82 D_C37:G50_D D 37 ? D 50 ? ? 1 1 D G 12 1_555 D C 23 1_555 0.359 0.106 -1.249 -4.230 -13.324 4.068 83 D_G38:C49_D D 38 ? D 49 ? 19 1 1 D G 13 1_555 D C 22 1_555 -0.059 0.369 0.257 -33.359 -2.646 7.610 84 D_G39:C48_D D 39 ? D 48 ? ? 1 1 D U 14 1_555 D A 19 1_555 1.897 -1.220 1.732 -13.360 14.829 -72.067 85 D_U40:A45_D D 40 ? D 45 ? ? 1 1 F G 10 1_555 F C 25 1_555 -2.526 0.042 0.339 -11.139 -23.692 18.226 86 F_G36:C51_F F 36 ? F 51 ? ? 1 1 F C 11 1_555 F G 24 1_555 -0.142 -0.382 0.837 5.882 -6.442 -0.364 87 F_C37:G50_F F 37 ? F 50 ? 19 1 1 F G 12 1_555 F C 23 1_555 -1.432 -0.456 -0.876 -3.906 -12.679 9.735 88 F_G38:C49_F F 38 ? F 49 ? 19 1 1 F G 13 1_555 F C 22 1_555 0.998 0.204 0.980 -7.050 1.992 2.429 89 F_G39:C48_F F 39 ? F 48 ? 19 1 1 F U 14 1_555 F A 19 1_555 4.040 -1.090 0.817 -12.142 -10.544 -106.405 90 F_U40:A45_F F 40 ? F 45 ? 24 4 1 F A 27 1_555 F A 29 1_555 1.057 3.597 -1.071 -21.139 46.585 -66.020 91 F_A53:A55_F F 53 ? F 55 ? ? 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 12 1_555 B A 35 1_555 A G 13 1_555 B C 34 1_555 -1.232 -1.667 3.409 -2.854 8.118 30.533 -4.541 1.733 2.978 15.043 5.289 31.695 1 AA_U12G13:C60A61_BB A 12 ? B 61 ? A 13 ? B 60 ? 1 A G 13 1_555 B C 34 1_555 A C 14 1_555 B G 33 1_555 0.921 -1.386 3.443 4.241 2.232 55.891 -1.609 -0.724 3.446 2.377 -4.516 56.079 2 AA_G13C14:G59C60_BB A 13 ? B 60 ? A 14 ? B 59 ? 1 A C 14 1_555 B G 33 1_555 A A 15 1_555 B U 31 1_555 0.455 -2.312 2.389 7.594 8.499 5.292 -15.148 2.015 -0.280 48.597 -43.426 12.562 3 AA_C14A15:U57G59_BB A 14 ? B 59 ? A 15 ? B 57 ? 1 A A 15 1_555 B U 31 1_555 A G 16 1_555 B C 21 1_555 -0.048 -2.132 3.136 2.771 17.499 34.158 -5.020 0.354 1.857 27.609 -4.372 38.357 4 AA_A15G16:C47U57_BB A 15 ? B 57 ? A 16 ? B 47 ? 1 A G 16 1_555 B C 21 1_555 A C 17 1_555 B G 20 1_555 -0.684 -1.353 2.908 1.831 2.424 23.161 -4.052 2.227 2.692 6.005 -4.536 23.357 5 AA_G16C17:G46C47_BB A 16 ? B 47 ? A 17 ? B 46 ? 1 A C 17 1_555 B G 20 1_555 A U 19 1_555 B A 9 1_555 -0.566 -1.788 4.454 2.544 11.648 45.913 -3.451 0.972 3.881 14.643 -3.198 47.355 6 AA_C17U19:A35G46_BB A 17 ? B 46 ? A 19 ? B 35 ? 1 A A 21 1_555 B U 6 1_555 A U 22 1_555 B A 5 1_555 0.056 0.474 1.912 -4.548 -0.215 34.343 0.815 -0.502 1.887 -0.361 7.661 34.634 7 AA_A21U22:A31U32_BB A 21 ? B 32 ? A 22 ? B 31 ? 1 A U 22 1_555 B A 5 1_555 A U 23 1_555 B A 4 1_555 1.110 -1.578 3.510 -10.679 14.023 24.118 -5.675 -4.143 1.729 29.102 22.163 29.795 8 AA_U22U23:A30A31_BB A 22 ? B 31 ? A 23 ? B 30 ? 1 A U 23 1_555 B A 4 1_555 A G 24 1_555 B C 3 1_555 0.558 -1.792 2.448 7.172 17.055 16.309 -7.115 -0.085 0.557 45.121 -18.973 24.617 9 AA_U23G24:C29A30_BB A 23 ? B 30 ? A 24 ? B 29 ? 1 A G 24 1_555 B C 3 1_555 A C 25 1_555 B G 2 1_555 -1.402 0.487 2.447 11.625 4.144 35.022 0.381 3.282 1.943 6.637 -18.617 37.069 10 AA_G24C25:G28C29_BB A 24 ? B 29 ? A 25 ? B 28 ? 1 A C 25 1_555 B G 2 1_555 A C 26 1_555 B GTP 1 1_555 0.166 -0.990 4.999 18.125 23.527 48.501 -3.045 1.363 4.007 26.018 -20.044 56.399 11 AA_C25C26:GTP27G28_BB A 25 ? B 28 ? A 26 ? B 27 ? 1 B C 11 1_555 B G 24 1_555 B G 12 1_555 B C 23 1_555 0.320 -1.719 3.800 -0.230 13.536 24.156 -6.987 -0.727 2.496 29.560 0.502 27.642 12 BB_C37G38:C49G50_BB B 37 ? B 50 ? B 38 ? B 49 ? 1 B G 12 1_555 B C 23 1_555 B G 13 1_555 B C 22 1_555 -0.338 -2.132 2.580 -9.186 1.601 44.002 -2.904 -0.213 2.523 2.109 12.099 44.931 13 BB_G38G39:C48C49_BB B 38 ? B 49 ? B 39 ? B 48 ? 1 B G 13 1_555 B C 22 1_555 B U 14 1_555 B A 19 1_555 -0.070 -1.236 3.228 -0.867 -2.845 123.396 -0.677 0.032 3.244 -1.615 0.492 123.417 14 BB_G39U40:A45C48_BB B 39 ? B 48 ? B 40 ? B 45 ? 1 B A 37 1_555 B A 18 1_555 B G 38 1_555 B C 17 1_555 -1.958 1.258 2.964 -6.689 -0.986 -74.726 -1.007 -1.790 2.820 0.811 -5.500 -74.987 15 BB_A63G64:C43A44_BB B 63 ? B 44 ? B 64 ? B 43 ? 1 B G 38 1_555 B C 17 1_555 B U 39 1_555 B A 16 1_555 -0.882 -0.978 3.587 1.355 3.940 42.871 -1.751 1.346 3.460 5.375 -1.849 43.064 16 BB_G64U65:A42C43_BB B 64 ? B 43 ? B 65 ? B 42 ? 1 B U 39 1_555 B A 16 1_555 B A 40 1_555 B U 15 1_555 -1.289 -2.928 2.587 -12.689 1.279 29.633 -5.473 0.390 2.768 2.367 23.486 32.204 17 BB_U65A66:U41A42_BB B 65 ? B 42 ? B 66 ? B 41 ? 1 B A 40 1_555 B U 15 1_555 B A 41 1_555 A U 8 1_555 3.321 -1.975 2.708 19.249 -0.846 28.048 -3.229 -2.124 4.145 -1.538 -34.976 33.918 18 BB_A66A67:U8U41_AB B 66 ? B 41 ? B 67 ? A 8 ? 1 B A 41 1_555 A U 8 1_555 B U 42 1_555 A A 7 1_555 0.872 -0.674 2.824 22.583 10.071 39.858 -1.628 0.639 2.697 13.336 -29.905 46.638 19 BB_A67U68:A7U8_AA B 67 ? A 8 ? B 68 ? A 7 ? 1 B U 42 1_555 A A 7 1_555 B G 43 1_555 A C 6 1_555 0.300 -1.095 3.580 -6.964 20.494 29.188 -4.627 -1.457 2.240 35.210 11.965 36.197 20 BB_U68G69:C6A7_AA B 68 ? A 7 ? B 69 ? A 6 ? 1 B G 43 1_555 A C 6 1_555 B U 44 1_555 A G 5 1_555 0.400 -1.457 3.065 4.411 12.865 35.552 -3.670 -0.125 2.443 20.181 -6.919 37.986 21 BB_G69U70:G5C6_AA B 69 ? A 6 ? B 70 ? A 5 ? 1 B U 44 1_555 A G 5 1_555 B C 45 1_555 A G 4 1_555 -0.344 -2.391 2.705 -3.552 13.715 26.182 -6.565 0.179 1.346 27.834 7.208 29.710 22 BB_U70C71:G4G5_AA B 70 ? A 5 ? B 71 ? A 4 ? 1 B C 45 1_555 A G 4 1_555 B G 46 1_555 A C 3 1_555 -0.579 -2.181 2.916 2.821 4.284 20.817 -7.277 2.488 2.326 11.629 -7.657 21.432 23 BB_C71G72:C3G4_AA B 71 ? A 4 ? B 72 ? A 3 ? 1 B G 46 1_555 A C 3 1_555 B C 47 1_555 A G 2 1_555 -0.464 -1.361 3.303 -0.659 7.294 49.380 -2.136 0.503 3.091 8.675 0.784 49.887 24 BB_G72C73:G2C3_AA B 72 ? A 3 ? B 73 ? A 2 ? 1 B C 47 1_555 A G 2 1_555 B G 48 1_555 A C 1 1_555 1.112 -1.811 3.211 -0.768 7.549 6.449 -20.594 -7.444 0.624 49.438 5.030 9.955 25 BB_C73G74:C1G2_AA B 73 ? A 2 ? B 74 ? A 1 ? 1 B G 48 1_555 A C 1 1_555 E C 1 1_555 F G 48 1_555 -0.264 -2.332 2.997 5.091 -7.358 22.819 -3.173 2.232 3.433 -17.745 -12.277 24.489 26 BE_G74C1:G74C1_FA B 74 ? A 1 ? E 1 ? F 74 ? 1 E C 1 1_555 F G 48 1_555 E G 2 1_555 F C 47 1_555 -0.067 -1.770 3.472 -3.060 6.838 11.073 -14.156 -2.643 1.991 31.181 13.953 13.363 27 EE_C1G2:C73G74_FF E 1 ? F 74 ? E 2 ? F 73 ? 1 E G 2 1_555 F C 47 1_555 E C 3 1_555 F G 46 1_555 0.224 -1.354 3.163 11.047 2.679 41.019 -2.130 0.772 3.032 3.737 -15.411 42.499 28 EE_G2C3:G72C73_FF E 2 ? F 73 ? E 3 ? F 72 ? 1 E C 3 1_555 F G 46 1_555 E G 4 1_555 F C 45 1_555 0.980 -1.681 3.403 -3.194 15.785 27.294 -5.702 -2.327 2.027 30.333 6.138 31.613 29 EE_C3G4:C71G72_FF E 3 ? F 72 ? E 4 ? F 71 ? 1 E G 4 1_555 F C 45 1_555 E G 5 1_555 F U 44 1_555 0.223 -2.276 2.702 0.442 9.818 24.566 -6.796 -0.407 1.685 21.983 -0.989 26.430 30 EE_G4G5:U70C71_FF E 4 ? F 71 ? E 5 ? F 70 ? 1 E G 5 1_555 F U 44 1_555 E C 6 1_555 F G 43 1_555 0.008 -1.553 3.198 -2.374 9.828 31.913 -4.177 -0.370 2.611 17.339 4.189 33.437 31 EE_G5C6:G69U70_FF E 5 ? F 70 ? E 6 ? F 69 ? 1 E C 6 1_555 F G 43 1_555 E A 7 1_555 F U 42 1_555 -0.242 -1.004 2.897 2.548 10.339 39.075 -2.434 0.592 2.542 15.119 -3.726 40.445 32 EE_C6A7:U68G69_FF E 6 ? F 69 ? E 7 ? F 68 ? 1 E A 7 1_555 F U 42 1_555 E U 8 1_555 F A 41 1_555 -0.357 -1.997 3.441 -15.798 17.150 27.720 -5.485 -1.505 1.885 29.964 27.602 36.075 33 EE_A7U8:A67U68_FF E 7 ? F 68 ? E 8 ? F 67 ? 1 E U 8 1_555 F A 41 1_555 F U 15 1_555 F A 40 1_555 -3.708 -1.753 2.220 -12.634 2.499 41.990 -2.545 3.975 3.056 3.393 17.152 43.835 34 EF_U8U41:A66A67_FF E 8 ? F 67 ? F 41 ? F 66 ? 1 F U 15 1_555 F A 40 1_555 F A 16 1_555 F U 39 1_555 0.431 -3.032 3.003 10.099 3.959 21.642 -8.334 1.768 2.379 9.790 -24.977 24.180 35 FF_U41A42:U65A66_FF F 41 ? F 66 ? F 42 ? F 65 ? 1 F A 16 1_555 F U 39 1_555 F C 17 1_555 F G 38 1_555 0.787 -0.895 3.684 -10.219 9.245 49.444 -1.726 -1.675 3.266 10.812 11.951 51.212 36 FF_A42C43:G64U65_FF F 42 ? F 65 ? F 43 ? F 64 ? 1 F C 17 1_555 F G 38 1_555 F A 18 1_555 F A 37 1_555 -0.511 -3.113 -0.243 -138.840 101.809 76.684 -1.342 0.551 -1.271 51.782 70.617 173.859 37 FF_C43A44:A63G64_FF F 43 ? F 64 ? F 44 ? F 63 ? 1 F A 18 1_555 F A 37 1_555 E A 11 1_555 F G 36 1_555 0.683 -4.079 -6.232 146.657 -69.804 -93.407 0.996 -1.873 -6.176 35.920 75.467 -167.970 38 FE_A44A11:G62A63_FF F 44 ? F 63 ? E 11 ? F 62 ? 1 E A 11 1_555 F G 36 1_555 E G 13 1_555 F C 34 1_555 0.449 -1.584 6.731 -1.105 11.290 86.275 -1.657 -0.376 6.524 8.226 0.805 86.872 39 EE_A11G13:C60G62_FF E 11 ? F 62 ? E 13 ? F 60 ? 1 E G 13 1_555 F C 34 1_555 E C 14 1_555 F G 33 1_555 1.352 -1.252 3.141 4.673 7.849 50.411 -1.965 -1.258 3.033 9.129 -5.435 51.179 40 EE_G13C14:G59C60_FF E 13 ? F 60 ? E 14 ? F 59 ? 1 E C 14 1_555 F G 33 1_555 E A 15 1_555 F U 31 1_555 0.476 -1.266 2.983 -5.527 14.765 29.973 -4.131 -1.550 2.038 26.378 9.875 33.782 41 EE_C14A15:U57G59_FF E 14 ? F 59 ? E 15 ? F 57 ? 1 E A 15 1_555 F U 31 1_555 E G 16 1_555 F C 21 1_555 -0.492 -2.014 2.944 6.532 2.308 33.031 -3.795 1.766 2.658 4.005 -11.333 33.730 42 EE_A15G16:C47U57_FF E 15 ? F 57 ? E 16 ? F 47 ? 1 E G 16 1_555 F C 21 1_555 E C 17 1_555 F G 20 1_555 0.288 -2.957 3.583 0.227 -0.862 18.336 -8.734 -0.763 3.720 -2.702 -0.711 18.357 43 EE_G16C17:G46C47_FF E 16 ? F 47 ? E 17 ? F 46 ? 1 E C 17 1_555 F G 20 1_555 E U 19 1_555 F A 8 1_555 -1.772 -3.225 5.417 -6.280 22.333 55.658 -4.920 1.297 4.127 22.849 6.425 59.941 44 EE_C17U19:A34G46_FF E 17 ? F 46 ? E 19 ? F 34 ? 1 E U 19 1_555 F A 8 1_555 E U 20 1_555 F A 7 1_555 0.655 -0.548 2.963 1.518 2.362 36.485 -1.167 -0.854 2.947 3.767 -2.420 36.589 45 EE_U19U20:A33A34_FF E 19 ? F 34 ? E 20 ? F 33 ? 1 E U 20 1_555 F A 7 1_555 E A 21 1_555 F U 6 1_555 -1.233 -1.215 4.286 4.147 21.542 29.296 -5.473 2.651 2.626 36.793 -7.082 36.455 46 EE_U20A21:U32A33_FF E 20 ? F 33 ? E 21 ? F 32 ? 1 E A 21 1_555 F U 6 1_555 E U 23 1_555 F A 4 1_555 1.223 -2.181 6.033 -6.341 17.388 71.590 -2.803 -1.379 5.351 14.624 5.334 73.633 47 EE_A21U23:A30U32_FF E 21 ? F 32 ? E 23 ? F 30 ? 1 E U 23 1_555 F A 4 1_555 E G 24 1_555 F C 3 1_555 2.153 -1.799 2.844 -2.589 13.706 5.634 -11.690 -9.135 -0.940 66.927 12.641 15.038 48 EE_U23G24:C29A30_FF E 23 ? F 30 ? E 24 ? F 29 ? 1 E G 24 1_555 F C 3 1_555 E C 25 1_555 F G 2 1_555 -0.763 -0.083 3.218 -3.738 -9.067 55.562 0.422 0.598 3.235 -9.643 3.975 56.353 49 EE_G24C25:G28C29_FF E 24 ? F 29 ? E 25 ? F 28 ? 1 E C 25 1_555 F G 2 1_555 E C 26 1_555 F GTP 1 1_555 0.793 -1.615 3.504 7.062 7.032 26.948 -4.908 0.058 3.098 14.476 -14.537 28.700 50 EE_C25C26:GTP27G28_FF E 25 ? F 28 ? E 26 ? F 27 ? 1 C C 1 1_555 D G 48 1_555 C G 2 1_555 D C 47 1_555 -1.987 -2.754 2.278 0.245 9.271 22.568 -8.061 4.746 1.058 22.506 -0.594 24.376 51 CC_C1G2:C73G74_DD C 1 ? D 74 ? C 2 ? D 73 ? 1 C G 2 1_555 D C 47 1_555 C C 3 1_555 D G 46 1_555 1.068 -1.135 3.763 12.489 -0.568 41.597 -1.470 0.015 3.926 -0.779 -17.126 43.355 52 CC_G2C3:G72C73_DD C 2 ? D 73 ? C 3 ? D 72 ? 1 C C 3 1_555 D G 46 1_555 C G 4 1_555 D C 45 1_555 -0.263 -1.728 2.664 -4.533 21.590 22.042 -5.775 -0.046 0.753 44.586 9.362 31.089 53 CC_C3G4:C71G72_DD C 3 ? D 72 ? C 4 ? D 71 ? 1 C G 4 1_555 D C 45 1_555 C G 5 1_555 D U 44 1_555 -0.620 -1.712 2.950 -1.492 7.486 26.254 -5.181 1.001 2.410 16.055 3.200 27.322 54 CC_G4G5:U70C71_DD C 4 ? D 71 ? C 5 ? D 70 ? 1 C G 5 1_555 D U 44 1_555 C C 6 1_555 D G 43 1_555 -0.191 -0.863 3.333 0.539 10.671 42.638 -2.156 0.306 3.039 14.406 -0.728 43.895 55 CC_G5C6:G69U70_DD C 5 ? D 70 ? C 6 ? D 69 ? 1 C C 6 1_555 D G 43 1_555 C A 7 1_555 D U 42 1_555 -1.041 -1.418 2.866 -16.010 12.936 22.587 -4.959 -0.817 2.081 26.921 33.320 30.469 56 CC_C6A7:U68G69_DD C 6 ? D 69 ? C 7 ? D 68 ? 1 C A 7 1_555 D U 42 1_555 C U 8 1_555 D A 41 1_555 -0.202 -1.828 3.229 -5.089 0.712 35.255 -3.091 -0.400 3.190 1.167 8.348 35.616 57 CC_A7U8:A67U68_DD C 7 ? D 68 ? C 8 ? D 67 ? 1 C U 8 1_555 D A 41 1_555 D U 15 1_555 D A 40 1_555 -3.825 -1.610 2.975 -15.783 14.627 42.077 -3.270 3.441 3.423 18.961 20.459 47.037 58 CD_U8U41:A66A67_DD C 8 ? D 67 ? D 41 ? D 66 ? 1 D U 15 1_555 D A 40 1_555 D A 16 1_555 D U 39 1_555 1.100 -3.456 2.780 6.405 -15.239 20.337 -2.478 -0.263 4.428 -36.367 -15.285 26.153 59 DD_U41A42:U65A66_DD D 41 ? D 66 ? D 42 ? D 65 ? 1 D A 16 1_555 D U 39 1_555 D C 17 1_555 D G 38 1_555 0.594 -2.180 3.124 13.196 6.392 101.078 -1.495 -0.195 3.064 4.125 -8.515 101.847 60 DD_A42C43:G64U65_DD D 42 ? D 65 ? D 43 ? D 64 ? 1 D C 17 1_555 D G 38 1_555 D A 18 1_555 D A 37 1_555 -1.584 -2.986 -1.108 -80.268 157.876 140.689 -1.276 0.902 -1.697 79.013 40.172 179.028 61 DD_C43A44:A63G64_DD D 43 ? D 64 ? D 44 ? D 63 ? 1 D A 18 1_555 D A 37 1_555 C A 11 1_555 D G 36 1_555 2.770 -4.189 -3.192 134.379 -87.638 -24.322 0.257 -1.459 -5.184 48.027 73.642 -160.874 62 DC_A44A11:G62A63_DD D 44 ? D 63 ? C 11 ? D 62 ? 1 C G 13 1_555 D C 34 1_555 C C 14 1_555 D G 33 1_555 -0.121 -0.308 2.814 19.098 1.308 48.771 -0.425 1.227 2.593 1.518 -22.164 52.179 63 CC_G13C14:G59C60_DD C 13 ? D 60 ? C 14 ? D 59 ? 1 C C 14 1_555 D G 33 1_555 C A 15 1_555 D U 31 1_555 0.275 -1.908 4.105 -11.927 -3.721 22.624 -2.939 -4.889 3.752 -8.686 27.841 25.805 64 CC_C14A15:U57G59_DD C 14 ? D 59 ? C 15 ? D 57 ? 1 C A 15 1_555 D U 31 1_555 C G 16 1_555 D C 21 1_555 1.818 -2.666 2.741 5.996 12.171 20.107 -9.034 -3.014 1.401 30.744 -15.147 24.217 65 CC_A15G16:C47U57_DD C 15 ? D 57 ? C 16 ? D 47 ? 1 C G 16 1_555 D C 21 1_555 C C 17 1_555 D G 20 1_555 1.309 -2.006 2.834 13.178 7.497 40.776 -3.352 -0.645 2.720 10.338 -18.173 43.391 66 CC_G16C17:G46C47_DD C 16 ? D 47 ? C 17 ? D 46 ? 1 C C 17 1_555 D G 20 1_555 C U 18 1_555 D A 9 1_555 -0.806 -2.439 3.629 -12.812 18.900 14.940 -9.265 -1.058 0.698 47.369 32.111 27.232 67 CC_C17U18:A35G46_DD C 17 ? D 46 ? C 18 ? D 35 ? 1 C U 18 1_555 D A 9 1_555 C U 19 1_555 D A 8 1_555 -0.588 -1.420 2.709 1.728 5.302 32.740 -3.188 1.258 2.422 9.322 -3.038 33.198 68 CC_U18U19:A34A35_DD C 18 ? D 35 ? C 19 ? D 34 ? 1 C U 19 1_555 D A 8 1_555 C U 20 1_555 D A 7 1_555 -0.322 -1.525 3.086 -4.499 1.406 28.295 -3.378 -0.303 3.022 2.851 9.123 28.677 69 CC_U19U20:A33A34_DD C 19 ? D 34 ? C 20 ? D 33 ? 1 C U 20 1_555 D A 7 1_555 C A 21 1_555 D U 6 1_555 0.025 -1.252 3.266 5.279 13.634 36.333 -3.409 0.558 2.626 20.855 -8.076 39.072 70 CC_U20A21:U32A33_DD C 20 ? D 33 ? C 21 ? D 32 ? 1 C A 21 1_555 D U 6 1_555 C U 22 1_555 D A 5 1_555 -0.294 -0.820 3.058 1.667 12.940 31.098 -3.288 0.748 2.509 22.914 -2.952 33.661 71 CC_A21U22:A31U32_DD C 21 ? D 32 ? C 22 ? D 31 ? 1 C U 22 1_555 D A 5 1_555 C G 24 1_555 D C 3 1_555 0.280 -1.623 6.562 -1.000 19.861 59.249 -3.346 -0.361 5.804 19.502 0.982 62.209 72 CC_U22G24:C29A31_DD C 22 ? D 31 ? C 24 ? D 29 ? 1 C G 24 1_555 D C 3 1_555 C C 26 1_555 D GTP 1 1_555 0.229 -1.538 4.920 12.935 16.353 65.504 -2.270 0.510 4.448 14.731 -11.652 68.389 73 CC_G24C26:GTP27C29_DD C 24 ? D 29 ? C 26 ? D 27 ? 1 D G 10 1_555 D C 25 1_555 D C 11 1_555 D G 24 1_555 0.835 -1.975 3.349 7.377 1.642 34.678 -3.492 -0.249 3.356 2.714 -12.197 35.467 74 DD_G36C37:G50C51_DD D 36 ? D 51 ? D 37 ? D 50 ? 1 D C 11 1_555 D G 24 1_555 D G 12 1_555 D C 23 1_555 -0.156 -0.931 3.554 10.563 18.147 33.902 -3.531 1.487 2.597 28.036 -16.320 39.715 75 DD_C37G38:C49G50_DD D 37 ? D 50 ? D 38 ? D 49 ? 1 D G 12 1_555 D C 23 1_555 D G 13 1_555 D C 22 1_555 0.186 -2.073 3.490 -13.854 14.631 31.766 -5.019 -1.987 2.117 23.957 22.685 37.479 76 DD_G38G39:C48C49_DD D 38 ? D 49 ? D 39 ? D 48 ? 1 D G 13 1_555 D C 22 1_555 D U 14 1_555 D A 19 1_555 -1.759 -1.003 2.989 -9.824 -0.242 70.268 -0.857 1.194 3.182 -0.209 8.494 70.864 77 DD_G39U40:A45C48_DD D 39 ? D 48 ? D 40 ? D 45 ? 1 F G 10 1_555 F C 25 1_555 F C 11 1_555 F G 24 1_555 -0.852 -0.523 3.258 -7.822 -10.188 45.472 0.211 0.401 3.388 -12.879 9.888 47.159 78 FF_G36C37:G50C51_FF F 36 ? F 51 ? F 37 ? F 50 ? 1 F C 11 1_555 F G 24 1_555 F G 12 1_555 F C 23 1_555 1.435 -1.436 3.343 14.229 18.434 20.628 -6.234 0.055 2.046 38.799 -29.950 31.015 79 FF_C37G38:C49G50_FF F 37 ? F 50 ? F 38 ? F 49 ? 1 F G 12 1_555 F C 23 1_555 F G 13 1_555 F C 22 1_555 0.138 -1.939 2.970 -14.902 5.872 48.025 -2.639 -1.088 2.584 6.992 17.745 50.475 80 FF_G38G39:C48C49_FF F 38 ? F 49 ? F 39 ? F 48 ? 1 F G 13 1_555 F C 22 1_555 F U 14 1_555 F A 19 1_555 -2.442 -2.444 3.252 3.336 8.143 77.333 -2.165 2.035 2.933 6.497 -2.662 77.754 81 FF_G39U40:A45C48_FF F 39 ? F 48 ? F 40 ? F 45 ? # _atom_sites.entry_id 4QJH _atom_sites.fract_transf_matrix[1][1] 0.004371 _atom_sites.fract_transf_matrix[1][2] 0.002524 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009895 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_