HEADER TRANSCRIPTION FACTOR/HORMONE 04-JUN-14 4QJR TITLE CRYSTAL STRUCTURE OF HUMAN NUCLEAR RECEPTOR SF-1 (NR5A1) BOUND TO ITS TITLE 2 HORMONE PIP3 AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROIDOGENIC FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 218-461; COMPND 5 SYNONYM: SF-1, STF-1, ADRENAL 4-BINDING PROTEIN, FUSHI TARAZU FACTOR COMPND 6 HOMOLOG 1, NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 1, STEROID COMPND 7 HORMONE RECEPTOR AD4BP; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA COMPND 12 COACTIVATOR 1-ALPHA; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: UNP RESIDUES 139-152; COMPND 15 SYNONYM: PGC-1-ALPHA, PPAR-GAMMA COACTIVATOR 1-ALPHA, PPARGC-1-ALPHA, COMPND 16 LIGAND EFFECT MODULATOR 6; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AD4BP, FTZF1, NR5A1, RC2003B, SF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBH4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: PGC-1ALPHA (PEROXISOME PROLIFERATOR-ACTIVATED SOURCE 17 RECEPTOR GAMMA CO-ACTIVATOR-1ALPHA) PEPTIDE CONTAINING RESIDUES 139- SOURCE 18 EEPSLLKKLLLAPA-152 KEYWDS NUCLEAR HORMONE RECEPTOR, NR5A1, SF-1 LIGAND BINDINGNUCLEAR DOMAIN, KEYWDS 2 REGULATORY LIGANDS, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 3 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 4 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, PARTNERSHIP FOR STEM CELL KEYWDS 5 BIOLOGY, PIP3, PIP2, NUCLEUS, NUCLEAR PHOSPHATIDYLINOSITOL KEYWDS 6 PHOSPHATES, TRANSCRIPTION FACTOR-HORMONE COMPLEX, STEMCELL EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR STEM CELL AUTHOR 2 BIOLOGY (STEMCELL) REVDAT 6 13-MAR-24 4QJR 1 COMPND SOURCE REVDAT 5 20-SEP-23 4QJR 1 REMARK REVDAT 4 01-FEB-23 4QJR 1 COMPND REMARK SEQADV HETNAM REVDAT 3 22-NOV-17 4QJR 1 REMARK REVDAT 2 12-NOV-14 4QJR 1 JRNL REVDAT 1 30-JUL-14 4QJR 0 JRNL AUTH R.D.BLIND,E.P.SABLIN,K.M.KUCHENBECKER,H.J.CHIU,A.M.DEACON, JRNL AUTH 2 D.DAS,R.J.FLETTERICK,H.A.INGRAHAM JRNL TITL THE SIGNALING PHOSPHOLIPID PIP3 CREATES A NEW INTERACTION JRNL TITL 2 SURFACE ON THE NUCLEAR RECEPTOR SF-1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 15054 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25288771 JRNL DOI 10.1073/PNAS.1416740111 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7467 - 4.3546 1.00 2724 142 0.1730 0.2018 REMARK 3 2 4.3546 - 3.4594 0.99 2564 135 0.1914 0.2308 REMARK 3 3 3.4594 - 3.0230 1.00 2534 134 0.2155 0.3065 REMARK 3 4 3.0230 - 2.7470 1.00 2518 133 0.2142 0.2434 REMARK 3 5 2.7470 - 2.5503 0.99 2495 129 0.2117 0.2678 REMARK 3 6 2.5503 - 2.4001 0.99 2461 130 0.2385 0.2637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2222 REMARK 3 ANGLE : 0.589 3021 REMARK 3 CHIRALITY : 0.040 351 REMARK 3 PLANARITY : 0.002 380 REMARK 3 DIHEDRAL : 20.036 925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 218:461) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7727 27.9725 -3.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.5098 T22: 0.3330 REMARK 3 T33: 0.4013 T12: -0.1390 REMARK 3 T13: -0.0396 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 2.5078 L22: 1.9678 REMARK 3 L33: 2.0788 L12: -0.9335 REMARK 3 L13: 0.2123 L23: -0.6114 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: 0.1923 S13: -0.2287 REMARK 3 S21: 0.0035 S22: -0.0720 S23: 0.1222 REMARK 3 S31: 0.3481 S32: 0.0422 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 141:152) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9468 18.6027 -8.7738 REMARK 3 T TENSOR REMARK 3 T11: 0.6688 T22: 0.6082 REMARK 3 T33: 1.5518 T12: -0.6059 REMARK 3 T13: -0.3633 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 0.1430 L22: 0.0529 REMARK 3 L33: 0.0225 L12: 0.0950 REMARK 3 L13: -0.0408 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: 0.2865 S13: -0.3304 REMARK 3 S21: -0.1263 S22: 0.0659 S23: 0.2841 REMARK 3 S31: 0.1989 S32: 0.0269 S33: 0.1958 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 501:501) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5250 44.9193 -11.8720 REMARK 3 T TENSOR REMARK 3 T11: 0.8711 T22: 0.5094 REMARK 3 T33: 0.6006 T12: -0.0814 REMARK 3 T13: -0.0347 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 0.0609 L22: 0.0351 REMARK 3 L33: 0.0385 L12: 0.0037 REMARK 3 L13: 0.0605 L23: 0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.3837 S12: 0.2309 S13: 0.5191 REMARK 3 S21: 0.0932 S22: 0.0559 S23: 0.6417 REMARK 3 S31: -1.2718 S32: -0.1854 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.165 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : 0.71000 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8K, 0.025M MGOAC, 30% REMARK 280 GLYCEROL, 0.067MM PIP3, 0.80MM 14MER EEPSLLKKLLLAPA, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.81500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.42500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.90750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.72250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.90750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.72250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 502 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU B 139 REMARK 465 GLU B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 253 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 285 -49.85 66.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIZ A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-429246 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: JCSG-429245 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 SF-1 (UNIPROT Q13285, NR5A1_HUMAN, STF1_HUMAN) LIGAND BINDING REMARK 999 DOMAIN (LBD) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY AMINO ACID RESIDUES 218-461 OF THE REMARK 999 TARGET SEQUENCE. RESIDUES C247 AND C412 IN THIS SF-1 CONSTRUCT WERE REMARK 999 MUTATED TO S247 AND S412. PEPTIDE CORRESPONDING TO THE PGC-1ALPHA REMARK 999 (PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA CO-ACTIVATOR- REMARK 999 1ALPHA) RESIDUES 139-EEPSLLKKLLLAPA-152 WAS CO-CRYSTALLIZED WITH REMARK 999 THE SF-1 LBD DBREF 4QJR A 218 461 UNP Q13285 STF1_HUMAN 218 461 DBREF 4QJR B 139 152 UNP Q9UBK2 PRGC1_HUMAN 139 152 SEQADV 4QJR GLY A 0 UNP Q13285 EXPRESSION TAG SEQADV 4QJR SER A 247 UNP Q13285 CYS 247 ENGINEERED MUTATION SEQADV 4QJR SER A 412 UNP Q13285 CYS 412 ENGINEERED MUTATION SEQRES 1 A 245 GLY SER GLY GLY PRO ASN VAL PRO GLU LEU ILE LEU GLN SEQRES 2 A 245 LEU LEU GLN LEU GLU PRO ASP GLU ASP GLN VAL ARG ALA SEQRES 3 A 245 ARG ILE LEU GLY SER LEU GLN GLU PRO THR LYS SER ARG SEQRES 4 A 245 PRO ASP GLN PRO ALA ALA PHE GLY LEU LEU CYS ARG MET SEQRES 5 A 245 ALA ASP GLN THR PHE ILE SER ILE VAL ASP TRP ALA ARG SEQRES 6 A 245 ARG CYS MET VAL PHE LYS GLU LEU GLU VAL ALA ASP GLN SEQRES 7 A 245 MET THR LEU LEU GLN ASN CYS TRP SER GLU LEU LEU VAL SEQRES 8 A 245 PHE ASP HIS ILE TYR ARG GLN VAL GLN HIS GLY LYS GLU SEQRES 9 A 245 GLY SER ILE LEU LEU VAL THR GLY GLN GLU VAL GLU LEU SEQRES 10 A 245 THR THR VAL ALA THR GLN ALA GLY SER LEU LEU HIS SER SEQRES 11 A 245 LEU VAL LEU ARG ALA GLN GLU LEU VAL LEU GLN LEU LEU SEQRES 12 A 245 ALA LEU GLN LEU ASP ARG GLN GLU PHE VAL CYS LEU LYS SEQRES 13 A 245 PHE ILE ILE LEU PHE SER LEU ASP LEU LYS PHE LEU ASN SEQRES 14 A 245 ASN HIS ILE LEU VAL LYS ASP ALA GLN GLU LYS ALA ASN SEQRES 15 A 245 ALA ALA LEU LEU ASP TYR THR LEU CYS HIS TYR PRO HIS SEQRES 16 A 245 SER GLY ASP LYS PHE GLN GLN LEU LEU LEU CYS LEU VAL SEQRES 17 A 245 GLU VAL ARG ALA LEU SER MET GLN ALA LYS GLU TYR LEU SEQRES 18 A 245 TYR HIS LYS HIS LEU GLY ASN GLU MET PRO ARG ASN ASN SEQRES 19 A 245 LEU LEU ILE GLU MET LEU GLN ALA LYS GLN THR SEQRES 1 B 14 GLU GLU PRO SER LEU LEU LYS LYS LEU LEU LEU ALA PRO SEQRES 2 B 14 ALA HET PIZ A 501 67 HET ACT A 502 4 HET ACT A 503 4 HETNAM PIZ (2S)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-DIHYDROXY-3,4,5- HETNAM 2 PIZ TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY) HETNAM 3 PIZ PHOSPHORYL]OXY}PROPANE -1,2-DIYL DIHEXADECANOATE HETNAM ACT ACETATE ION HETSYN PIZ PI(3,4,5)P3 DIPALMITOYL (16:0, 16:0) FORMUL 3 PIZ C41 H82 O22 P4 FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 HOH *117(H2 O) HELIX 1 1 PRO A 224 GLU A 234 1 11 HELIX 2 2 ASP A 236 GLN A 249 1 14 HELIX 3 3 PRO A 259 ARG A 282 1 24 HELIX 4 4 VAL A 285 LEU A 289 5 5 HELIX 5 5 GLU A 290 HIS A 317 1 28 HELIX 6 6 LEU A 333 ALA A 340 1 8 HELIX 7 7 GLY A 341 LEU A 361 1 21 HELIX 8 8 ASP A 364 PHE A 377 1 14 HELIX 9 9 ASP A 380 LEU A 384 5 5 HELIX 10 10 ASN A 386 TYR A 409 1 24 HELIX 11 11 ASP A 414 GLY A 443 1 30 HELIX 12 12 ASN A 450 GLN A 457 1 8 HELIX 13 13 SER B 142 LEU B 149 1 8 SHEET 1 A 2 SER A 322 LEU A 324 0 SHEET 2 A 2 GLU A 330 GLU A 332 -1 O VAL A 331 N ILE A 323 SITE 1 AC1 19 PHE A 262 LEU A 265 LEU A 306 VAL A 336 SITE 2 AC1 19 GLN A 339 ALA A 340 GLY A 341 LEU A 344 SITE 3 AC1 19 ALA A 351 TYR A 436 LYS A 440 HOH A 612 SITE 4 AC1 19 HOH A 613 HOH A 619 HOH A 654 HOH A 691 SITE 5 AC1 19 HOH A 694 HOH A 695 HOH A 696 SITE 1 AC2 5 TYR A 438 LEU A 456 GLN A 457 HOH A 690 SITE 2 AC2 5 HOH A 708 SITE 1 AC3 4 THR A 272 SER A 275 ASP A 309 HOH A 711 CRYST1 74.850 74.850 139.630 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007162 0.00000