data_4QM7 # _entry.id 4QM7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4QM7 NDB NA3058 RCSB RCSB086230 WWPDB D_1000086230 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4MDE . unspecified PDB 4MDF . unspecified PDB 4JSY . unspecified PDB 4JT2 . unspecified PDB 4JT4 . unspecified PDB 4JST . unspecified PDB 4QM6 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QM7 _pdbx_database_status.recvd_initial_deposition_date 2014-06-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Das, U.' 1 'Wang, L.K.' 2 'Smith, P.' 3 'Shuman, S.' 4 # _citation.id primary _citation.title ;Structures of bacterial polynucleotide kinase in a michaelis complex with nucleoside triphosphate (NTP)-Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP-Mg2+ and a 5'-phosphorylated oligonucleotide. ; _citation.journal_abbrev J.Bacteriol. _citation.journal_volume 196 _citation.page_first 4285 _citation.page_last 4292 _citation.year 2014 _citation.journal_id_ASTM JOBAAY _citation.country US _citation.journal_id_ISSN 0021-9193 _citation.journal_id_CSD 0767 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25266383 _citation.pdbx_database_id_DOI 10.1128/JB.02197-14 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Das, U.' 1 primary 'Wang, L.K.' 2 primary 'Smith, P.' 3 primary 'Munir, A.' 4 primary 'Shuman, S.' 5 # _cell.entry_id 4QM7 _cell.length_a 46.170 _cell.length_b 67.210 _cell.length_c 118.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QM7 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Metallophosphoesterase 19661.062 2 ? ? ? ? 2 polymer syn DNA 1166.805 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 357 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;S(MSE)KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL(MSE)SDDENDQTVTGAAFDVLHYIVSKRLQL GKLTVVDATNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ(MSE)KKSIKGLQRE GFRYVYILNSPEEVEEVVFERQP ; ;SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE EVEEVVFERQP ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DG)' CCTG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MSE n 1 3 LYS n 1 4 LEU n 1 5 THR n 1 6 ILE n 1 7 PRO n 1 8 GLU n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 VAL n 1 13 VAL n 1 14 LEU n 1 15 ILE n 1 16 GLY n 1 17 SER n 1 18 SER n 1 19 GLY n 1 20 SER n 1 21 GLY n 1 22 LYS n 1 23 SER n 1 24 THR n 1 25 PHE n 1 26 ALA n 1 27 LYS n 1 28 LYS n 1 29 HIS n 1 30 PHE n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 GLU n 1 35 VAL n 1 36 ILE n 1 37 SER n 1 38 SER n 1 39 ASP n 1 40 PHE n 1 41 CYS n 1 42 ARG n 1 43 GLY n 1 44 LEU n 1 45 MSE n 1 46 SER n 1 47 ASP n 1 48 ASP n 1 49 GLU n 1 50 ASN n 1 51 ASP n 1 52 GLN n 1 53 THR n 1 54 VAL n 1 55 THR n 1 56 GLY n 1 57 ALA n 1 58 ALA n 1 59 PHE n 1 60 ASP n 1 61 VAL n 1 62 LEU n 1 63 HIS n 1 64 TYR n 1 65 ILE n 1 66 VAL n 1 67 SER n 1 68 LYS n 1 69 ARG n 1 70 LEU n 1 71 GLN n 1 72 LEU n 1 73 GLY n 1 74 LYS n 1 75 LEU n 1 76 THR n 1 77 VAL n 1 78 VAL n 1 79 ASP n 1 80 ALA n 1 81 THR n 1 82 ASN n 1 83 VAL n 1 84 GLN n 1 85 GLU n 1 86 SER n 1 87 ALA n 1 88 ARG n 1 89 LYS n 1 90 PRO n 1 91 LEU n 1 92 ILE n 1 93 GLU n 1 94 ILE n 1 95 ALA n 1 96 LYS n 1 97 ASP n 1 98 TYR n 1 99 HIS n 1 100 CYS n 1 101 PHE n 1 102 PRO n 1 103 VAL n 1 104 ALA n 1 105 VAL n 1 106 VAL n 1 107 PHE n 1 108 ASN n 1 109 LEU n 1 110 PRO n 1 111 GLU n 1 112 LYS n 1 113 VAL n 1 114 CYS n 1 115 GLN n 1 116 GLU n 1 117 ARG n 1 118 ASN n 1 119 LYS n 1 120 ASN n 1 121 ARG n 1 122 THR n 1 123 ASP n 1 124 ARG n 1 125 GLN n 1 126 VAL n 1 127 GLU n 1 128 GLU n 1 129 TYR n 1 130 VAL n 1 131 ILE n 1 132 ARG n 1 133 LYS n 1 134 HIS n 1 135 THR n 1 136 GLN n 1 137 GLN n 1 138 MSE n 1 139 LYS n 1 140 LYS n 1 141 SER n 1 142 ILE n 1 143 LYS n 1 144 GLY n 1 145 LEU n 1 146 GLN n 1 147 ARG n 1 148 GLU n 1 149 GLY n 1 150 PHE n 1 151 ARG n 1 152 TYR n 1 153 VAL n 1 154 TYR n 1 155 ILE n 1 156 LEU n 1 157 ASN n 1 158 SER n 1 159 PRO n 1 160 GLU n 1 161 GLU n 1 162 VAL n 1 163 GLU n 1 164 GLU n 1 165 VAL n 1 166 VAL n 1 167 PHE n 1 168 GLU n 1 169 ARG n 1 170 GLN n 1 171 PRO n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Cthe_2768 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 27405 / DSM 1237' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ruminiclostridium thermocellum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 203119 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC POLYNUCLEOTIDE' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP A3DJ38_CLOTH A3DJ38 1 ;MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDAT NVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQLKKSIKGLQREGFRYVYILNSPEE VEEVVFERQP ; 1 ? 2 PDB 4QM7 4QM7 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4QM7 A 2 ? 171 ? A3DJ38 1 ? 170 ? 1 170 2 1 4QM7 B 2 ? 171 ? A3DJ38 1 ? 170 ? 1 170 3 2 4QM7 C 1 ? 4 ? 4QM7 1 ? 4 ? 1 4 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4QM7 SER A 1 ? UNP A3DJ38 ? ? 'EXPRESSION TAG' 0 1 1 4QM7 MSE A 45 ? UNP A3DJ38 VAL 44 CONFLICT 44 2 1 4QM7 MSE A 138 ? UNP A3DJ38 LEU 137 CONFLICT 137 3 2 4QM7 SER B 1 ? UNP A3DJ38 ? ? 'EXPRESSION TAG' 0 4 2 4QM7 MSE B 45 ? UNP A3DJ38 VAL 44 CONFLICT 44 5 2 4QM7 MSE B 138 ? UNP A3DJ38 LEU 137 CONFLICT 137 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4QM7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 45.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '100 mM sodium citrate, 100 mM magnesium chloride, 18-24% PEG 6000, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 130 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-05-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 4QM7 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 9999 _reflns.d_resolution_low 23.1 _reflns.d_resolution_high 1.8 _reflns.number_obs 34969 _reflns.number_all 35074 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4QM7 _refine.ls_number_reflns_obs 34905 _refine.ls_number_reflns_all 34939 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.085 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.1649 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1628 _refine.ls_R_factor_R_free 0.1882 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.76 _refine.ls_number_reflns_R_free 2707 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'molecular refinement' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.11 _refine.pdbx_overall_phase_error 17.58 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2722 _refine_hist.pdbx_number_atoms_nucleic_acid 63 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 357 _refine_hist.number_atoms_total 3208 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 23.085 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.014 ? ? 2970 ? 'X-RAY DIFFRACTION' f_angle_d 1.526 ? ? 4046 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 20.654 ? ? 1162 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.104 ? ? 459 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 502 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.8000 1.8327 1637 0.1852 99.00 0.1734 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.8327 1.8680 1686 0.1784 99.00 0.1739 . . 125 . . . . 'X-RAY DIFFRACTION' . 1.8680 1.9061 1655 0.1645 99.00 0.1573 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.9061 1.9475 1657 0.1622 99.00 0.1619 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.9475 1.9928 1682 0.1617 99.00 0.1613 . . 122 . . . . 'X-RAY DIFFRACTION' . 1.9928 2.0426 1676 0.1635 99.00 0.2086 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.0426 2.0978 1674 0.1503 99.00 0.2024 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.0978 2.1595 1653 0.1589 99.00 0.2074 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.1595 2.2291 1686 0.1540 100.00 0.1759 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.2291 2.3087 1680 0.1562 100.00 0.2079 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.3087 2.4011 1697 0.1672 100.00 0.2206 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.4011 2.5102 1647 0.1650 100.00 0.1956 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.5102 2.6424 1710 0.1771 100.00 0.1857 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.6424 2.8077 1704 0.1716 100.00 0.2124 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.8077 3.0240 1713 0.1778 100.00 0.2214 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.0240 3.3275 1708 0.1672 100.00 0.2005 . . 153 . . . . 'X-RAY DIFFRACTION' . 3.3275 3.8072 1733 0.1607 100.00 0.1898 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.8072 4.7896 1758 0.1393 100.00 0.1475 . . 150 . . . . 'X-RAY DIFFRACTION' . 4.7896 23.0869 1842 0.1705 100.00 0.1858 . . 158 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4QM7 _struct.title 'Structure of bacterial polynucleotide kinase bound to GTP and pDNA' _struct.pdbx_descriptor Metallophosphoesterase _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QM7 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'RNA repair, P-loop phosphotransferase, polynucleotide kinase, HYDROLASE-DNA complex, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? PHE A 30 ? GLY A 20 PHE A 29 1 ? 10 HELX_P HELX_P2 2 LYS A 31 ? THR A 33 ? LYS A 30 THR A 32 5 ? 3 HELX_P HELX_P3 3 SER A 38 ? SER A 46 ? SER A 37 SER A 45 1 ? 9 HELX_P HELX_P4 4 ASP A 51 ? THR A 53 ? ASP A 50 THR A 52 5 ? 3 HELX_P HELX_P5 5 VAL A 54 ? LEU A 72 ? VAL A 53 LEU A 71 1 ? 19 HELX_P HELX_P6 6 GLN A 84 ? TYR A 98 ? GLN A 83 TYR A 97 1 ? 15 HELX_P HELX_P7 7 PRO A 110 ? ARG A 121 ? PRO A 109 ARG A 120 1 ? 12 HELX_P HELX_P8 8 GLU A 127 ? ILE A 142 ? GLU A 126 ILE A 141 1 ? 16 HELX_P HELX_P9 9 GLY A 144 ? GLY A 149 ? GLY A 143 GLY A 148 1 ? 6 HELX_P HELX_P10 10 SER A 158 ? GLU A 164 ? SER A 157 GLU A 163 1 ? 7 HELX_P HELX_P11 11 GLY B 21 ? PHE B 30 ? GLY B 20 PHE B 29 1 ? 10 HELX_P HELX_P12 12 LYS B 31 ? THR B 33 ? LYS B 30 THR B 32 5 ? 3 HELX_P HELX_P13 13 SER B 38 ? SER B 46 ? SER B 37 SER B 45 1 ? 9 HELX_P HELX_P14 14 ASP B 51 ? THR B 53 ? ASP B 50 THR B 52 5 ? 3 HELX_P HELX_P15 15 VAL B 54 ? LEU B 72 ? VAL B 53 LEU B 71 1 ? 19 HELX_P HELX_P16 16 GLN B 84 ? TYR B 98 ? GLN B 83 TYR B 97 1 ? 15 HELX_P HELX_P17 17 PRO B 110 ? ARG B 121 ? PRO B 109 ARG B 120 1 ? 12 HELX_P HELX_P18 18 GLU B 127 ? ILE B 142 ? GLU B 126 ILE B 141 1 ? 16 HELX_P HELX_P19 19 GLY B 144 ? GLY B 149 ? GLY B 143 GLY B 148 1 ? 6 HELX_P HELX_P20 20 SER B 158 ? GLU B 164 ? SER B 157 GLU B 163 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 1 C ? ? ? 1_555 A MSE 2 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.321 ? covale2 covale ? ? A MSE 2 C ? ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A LEU 44 C ? ? ? 1_555 A MSE 45 N ? ? A LEU 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 45 C ? ? ? 1_555 A SER 46 N ? ? A MSE 44 A SER 45 1_555 ? ? ? ? ? ? ? 1.319 ? covale5 covale ? ? A GLN 137 C ? ? ? 1_555 A MSE 138 N ? ? A GLN 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 138 C ? ? ? 1_555 A LYS 139 N ? ? A MSE 137 A LYS 138 1_555 ? ? ? ? ? ? ? 1.337 ? covale7 covale ? ? B SER 1 C ? ? ? 1_555 B MSE 2 N ? ? B SER 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? B MSE 2 C ? ? ? 1_555 B LYS 3 N ? ? B MSE 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? B LEU 44 C ? ? ? 1_555 B MSE 45 N ? ? B LEU 43 B MSE 44 1_555 ? ? ? ? ? ? ? 1.326 ? covale10 covale ? ? B MSE 45 C ? ? ? 1_555 B SER 46 N ? ? B MSE 44 B SER 45 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? B GLN 137 C ? ? ? 1_555 B MSE 138 N ? ? B GLN 136 B MSE 137 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale ? ? B MSE 138 C ? ? ? 1_555 B LYS 139 N ? ? B MSE 137 B LYS 138 1_555 ? ? ? ? ? ? ? 1.321 ? metalc1 metalc ? ? B SER 23 OG ? ? ? 1_555 G MG . MG ? ? B SER 22 B MG 1002 1_555 ? ? ? ? ? ? ? 2.015 ? metalc2 metalc ? ? F GTP . O3G ? ? ? 1_555 G MG . MG ? ? B GTP 1001 B MG 1002 1_555 ? ? ? ? ? ? ? 2.040 ? metalc3 metalc ? ? A SER 23 OG ? ? ? 1_555 E MG . MG ? ? A SER 22 A MG 1002 1_555 ? ? ? ? ? ? ? 2.063 ? metalc4 metalc ? ? D GTP . O3G ? ? ? 1_555 E MG . MG ? ? A GTP 1001 A MG 1002 1_555 ? ? ? ? ? ? ? 2.070 ? metalc5 metalc ? ? F GTP . O1B ? ? ? 1_555 G MG . MG ? ? B GTP 1001 B MG 1002 1_555 ? ? ? ? ? ? ? 2.076 ? metalc6 metalc ? ? D GTP . O1B ? ? ? 1_555 E MG . MG ? ? A GTP 1001 A MG 1002 1_555 ? ? ? ? ? ? ? 2.109 ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1002 A HOH 1103 1_555 ? ? ? ? ? ? ? 1.987 ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1002 A HOH 1102 1_555 ? ? ? ? ? ? ? 2.031 ? metalc9 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 1002 B HOH 1103 1_555 ? ? ? ? ? ? ? 2.090 ? metalc10 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 1002 B HOH 1102 1_555 ? ? ? ? ? ? ? 2.113 ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1002 A HOH 1101 1_555 ? ? ? ? ? ? ? 2.115 ? metalc12 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 1002 B HOH 1104 1_555 ? ? ? ? ? ? ? 2.164 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? parallel D 1 2 ? parallel D 2 3 ? parallel D 3 4 ? parallel D 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 2 ? PRO A 7 ? MSE A 1 PRO A 6 A 2 VAL A 165 ? GLN A 170 ? VAL A 164 GLN A 169 B 1 VAL A 35 ? SER A 37 ? VAL A 34 SER A 36 B 2 THR A 76 ? ASP A 79 ? THR A 75 ASP A 78 B 3 SER A 10 ? ILE A 15 ? SER A 9 ILE A 14 B 4 PHE A 101 ? PHE A 107 ? PHE A 100 PHE A 106 B 5 TYR A 152 ? LEU A 156 ? TYR A 151 LEU A 155 C 1 MSE B 2 ? PRO B 7 ? MSE B 1 PRO B 6 C 2 VAL B 165 ? GLN B 170 ? VAL B 164 GLN B 169 D 1 VAL B 35 ? SER B 37 ? VAL B 34 SER B 36 D 2 THR B 76 ? ASP B 79 ? THR B 75 ASP B 78 D 3 SER B 10 ? ILE B 15 ? SER B 9 ILE B 14 D 4 PHE B 101 ? PHE B 107 ? PHE B 100 PHE B 106 D 5 TYR B 152 ? LEU B 156 ? TYR B 151 LEU B 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 5 O GLN A 170 ? O GLN A 169 B 1 2 N ILE A 36 ? N ILE A 35 O VAL A 77 ? O VAL A 76 B 2 3 O VAL A 78 ? O VAL A 77 N VAL A 12 ? N VAL A 11 B 3 4 N VAL A 13 ? N VAL A 12 O VAL A 103 ? O VAL A 102 B 4 5 N ALA A 104 ? N ALA A 103 O TYR A 154 ? O TYR A 153 C 1 2 N ILE B 6 ? N ILE B 5 O GLN B 170 ? O GLN B 169 D 1 2 N ILE B 36 ? N ILE B 35 O VAL B 77 ? O VAL B 76 D 2 3 O THR B 76 ? O THR B 75 N VAL B 12 ? N VAL B 11 D 3 4 N ILE B 15 ? N ILE B 14 O PHE B 107 ? O PHE B 106 D 4 5 N VAL B 106 ? N VAL B 105 O TYR B 154 ? O TYR B 153 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 24 'BINDING SITE FOR RESIDUE GTP A 1001' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 1002' AC3 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE GTP B 1001' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG B 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 SER A 17 ? SER A 16 . ? 1_555 ? 2 AC1 24 SER A 18 ? SER A 17 . ? 1_555 ? 3 AC1 24 GLY A 19 ? GLY A 18 . ? 1_555 ? 4 AC1 24 SER A 20 ? SER A 19 . ? 1_555 ? 5 AC1 24 GLY A 21 ? GLY A 20 . ? 1_555 ? 6 AC1 24 LYS A 22 ? LYS A 21 . ? 1_555 ? 7 AC1 24 SER A 23 ? SER A 22 . ? 1_555 ? 8 AC1 24 THR A 24 ? THR A 23 . ? 1_555 ? 9 AC1 24 ARG A 117 ? ARG A 116 . ? 1_555 ? 10 AC1 24 ARG A 121 ? ARG A 120 . ? 1_555 ? 11 AC1 24 ARG A 124 ? ARG A 123 . ? 1_555 ? 12 AC1 24 MG E . ? MG A 1002 . ? 1_555 ? 13 AC1 24 HOH H . ? HOH A 1101 . ? 1_555 ? 14 AC1 24 HOH H . ? HOH A 1102 . ? 1_555 ? 15 AC1 24 HOH H . ? HOH A 1103 . ? 1_555 ? 16 AC1 24 HOH H . ? HOH A 1118 . ? 1_555 ? 17 AC1 24 HOH H . ? HOH A 1124 . ? 1_555 ? 18 AC1 24 HOH H . ? HOH A 1138 . ? 1_555 ? 19 AC1 24 HOH H . ? HOH A 1144 . ? 1_555 ? 20 AC1 24 HOH H . ? HOH A 1190 . ? 1_555 ? 21 AC1 24 HOH H . ? HOH A 1214 . ? 1_555 ? 22 AC1 24 HOH H . ? HOH A 1232 . ? 1_555 ? 23 AC1 24 DC C 1 ? DC C 1 . ? 1_555 ? 24 AC1 24 HOH J . ? HOH C 112 . ? 1_555 ? 25 AC2 5 SER A 23 ? SER A 22 . ? 1_555 ? 26 AC2 5 GTP D . ? GTP A 1001 . ? 1_555 ? 27 AC2 5 HOH H . ? HOH A 1101 . ? 1_555 ? 28 AC2 5 HOH H . ? HOH A 1102 . ? 1_555 ? 29 AC2 5 HOH H . ? HOH A 1103 . ? 1_555 ? 30 AC3 23 SER B 17 ? SER B 16 . ? 1_555 ? 31 AC3 23 SER B 18 ? SER B 17 . ? 1_555 ? 32 AC3 23 GLY B 19 ? GLY B 18 . ? 1_555 ? 33 AC3 23 SER B 20 ? SER B 19 . ? 1_555 ? 34 AC3 23 GLY B 21 ? GLY B 20 . ? 1_555 ? 35 AC3 23 LYS B 22 ? LYS B 21 . ? 1_555 ? 36 AC3 23 SER B 23 ? SER B 22 . ? 1_555 ? 37 AC3 23 THR B 24 ? THR B 23 . ? 1_555 ? 38 AC3 23 ARG B 117 ? ARG B 116 . ? 1_555 ? 39 AC3 23 ARG B 121 ? ARG B 120 . ? 1_555 ? 40 AC3 23 ARG B 124 ? ARG B 123 . ? 1_555 ? 41 AC3 23 MG G . ? MG B 1002 . ? 1_555 ? 42 AC3 23 HOH I . ? HOH B 1102 . ? 1_555 ? 43 AC3 23 HOH I . ? HOH B 1103 . ? 1_555 ? 44 AC3 23 HOH I . ? HOH B 1104 . ? 1_555 ? 45 AC3 23 HOH I . ? HOH B 1142 . ? 1_555 ? 46 AC3 23 HOH I . ? HOH B 1154 . ? 1_555 ? 47 AC3 23 HOH I . ? HOH B 1159 . ? 1_555 ? 48 AC3 23 HOH I . ? HOH B 1161 . ? 1_555 ? 49 AC3 23 HOH I . ? HOH B 1221 . ? 1_555 ? 50 AC3 23 HOH I . ? HOH B 1254 . ? 1_555 ? 51 AC3 23 HOH I . ? HOH B 1256 . ? 1_555 ? 52 AC3 23 HOH I . ? HOH B 1260 . ? 1_555 ? 53 AC4 5 SER B 23 ? SER B 22 . ? 1_555 ? 54 AC4 5 GTP F . ? GTP B 1001 . ? 1_555 ? 55 AC4 5 HOH I . ? HOH B 1102 . ? 1_555 ? 56 AC4 5 HOH I . ? HOH B 1103 . ? 1_555 ? 57 AC4 5 HOH I . ? HOH B 1104 . ? 1_555 ? # _database_PDB_matrix.entry_id 4QM7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4QM7 _atom_sites.fract_transf_matrix[1][1] 0.021659 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014879 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008413 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 0 SER SER A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 GLU 8 7 7 GLU GLU A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 SER 20 19 19 SER SER A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 THR 24 23 23 THR THR A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 HIS 29 28 28 HIS HIS A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 GLU 34 33 33 GLU GLU A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 PHE 40 39 39 PHE PHE A . n A 1 41 CYS 41 40 40 CYS CYS A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 MSE 45 44 44 MSE MSE A . n A 1 46 SER 46 45 45 SER SER A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 PHE 59 58 58 PHE PHE A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 TYR 64 63 63 TYR TYR A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 GLN 84 83 83 GLN GLN A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 TYR 98 97 97 TYR TYR A . n A 1 99 HIS 99 98 98 HIS HIS A . n A 1 100 CYS 100 99 99 CYS CYS A . n A 1 101 PHE 101 100 100 PHE PHE A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 VAL 106 105 105 VAL VAL A . n A 1 107 PHE 107 106 106 PHE PHE A . n A 1 108 ASN 108 107 107 ASN ASN A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 GLU 111 110 110 GLU GLU A . n A 1 112 LYS 112 111 111 LYS LYS A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 CYS 114 113 113 CYS CYS A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 GLU 116 115 115 GLU ALA A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 ASN 120 119 119 ASN ASN A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 TYR 129 128 128 TYR TYR A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 HIS 134 133 133 HIS HIS A . n A 1 135 THR 135 134 134 THR THR A . n A 1 136 GLN 136 135 135 GLN GLN A . n A 1 137 GLN 137 136 136 GLN GLN A . n A 1 138 MSE 138 137 137 MSE MSE A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 LYS 140 139 139 LYS LYS A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 ILE 142 141 141 ILE ILE A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 GLN 146 145 145 GLN GLN A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 GLY 149 148 148 GLY GLY A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 TYR 152 151 151 TYR TYR A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 ASN 157 156 156 ASN ASN A . n A 1 158 SER 158 157 157 SER SER A . n A 1 159 PRO 159 158 158 PRO PRO A . n A 1 160 GLU 160 159 159 GLU GLU A . n A 1 161 GLU 161 160 160 GLU GLU A . n A 1 162 VAL 162 161 161 VAL VAL A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 GLU 164 163 163 GLU GLU A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 VAL 166 165 165 VAL VAL A . n A 1 167 PHE 167 166 166 PHE PHE A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 ARG 169 168 168 ARG ARG A . n A 1 170 GLN 170 169 169 GLN GLN A . n A 1 171 PRO 171 170 170 PRO PRO A . n B 1 1 SER 1 0 0 SER SER B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 LYS 3 2 2 LYS LYS B . n B 1 4 LEU 4 3 3 LEU LEU B . n B 1 5 THR 5 4 4 THR THR B . n B 1 6 ILE 6 5 5 ILE ILE B . n B 1 7 PRO 7 6 6 PRO PRO B . n B 1 8 GLU 8 7 7 GLU GLU B . n B 1 9 LEU 9 8 8 LEU LEU B . n B 1 10 SER 10 9 9 SER SER B . n B 1 11 LEU 11 10 10 LEU LEU B . n B 1 12 VAL 12 11 11 VAL VAL B . n B 1 13 VAL 13 12 12 VAL VAL B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 ILE 15 14 14 ILE ILE B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 SER 17 16 16 SER SER B . n B 1 18 SER 18 17 17 SER SER B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 SER 20 19 19 SER SER B . n B 1 21 GLY 21 20 20 GLY GLY B . n B 1 22 LYS 22 21 21 LYS LYS B . n B 1 23 SER 23 22 22 SER SER B . n B 1 24 THR 24 23 23 THR THR B . n B 1 25 PHE 25 24 24 PHE PHE B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 LYS 27 26 26 LYS LYS B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 HIS 29 28 28 HIS HIS B . n B 1 30 PHE 30 29 29 PHE PHE B . n B 1 31 LYS 31 30 30 LYS LYS B . n B 1 32 PRO 32 31 31 PRO PRO B . n B 1 33 THR 33 32 32 THR THR B . n B 1 34 GLU 34 33 33 GLU GLU B . n B 1 35 VAL 35 34 34 VAL VAL B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 SER 37 36 36 SER SER B . n B 1 38 SER 38 37 37 SER SER B . n B 1 39 ASP 39 38 38 ASP ASP B . n B 1 40 PHE 40 39 39 PHE PHE B . n B 1 41 CYS 41 40 40 CYS CYS B . n B 1 42 ARG 42 41 41 ARG ARG B . n B 1 43 GLY 43 42 42 GLY GLY B . n B 1 44 LEU 44 43 43 LEU LEU B . n B 1 45 MSE 45 44 44 MSE MSE B . n B 1 46 SER 46 45 45 SER SER B . n B 1 47 ASP 47 46 46 ASP ASP B . n B 1 48 ASP 48 47 47 ASP ASP B . n B 1 49 GLU 49 48 48 GLU ALA B . n B 1 50 ASN 50 49 49 ASN ASN B . n B 1 51 ASP 51 50 50 ASP ASP B . n B 1 52 GLN 52 51 51 GLN GLN B . n B 1 53 THR 53 52 52 THR THR B . n B 1 54 VAL 54 53 53 VAL VAL B . n B 1 55 THR 55 54 54 THR THR B . n B 1 56 GLY 56 55 55 GLY GLY B . n B 1 57 ALA 57 56 56 ALA ALA B . n B 1 58 ALA 58 57 57 ALA ALA B . n B 1 59 PHE 59 58 58 PHE PHE B . n B 1 60 ASP 60 59 59 ASP ASP B . n B 1 61 VAL 61 60 60 VAL VAL B . n B 1 62 LEU 62 61 61 LEU LEU B . n B 1 63 HIS 63 62 62 HIS HIS B . n B 1 64 TYR 64 63 63 TYR TYR B . n B 1 65 ILE 65 64 64 ILE ILE B . n B 1 66 VAL 66 65 65 VAL VAL B . n B 1 67 SER 67 66 66 SER SER B . n B 1 68 LYS 68 67 67 LYS LYS B . n B 1 69 ARG 69 68 68 ARG ARG B . n B 1 70 LEU 70 69 69 LEU LEU B . n B 1 71 GLN 71 70 70 GLN GLN B . n B 1 72 LEU 72 71 71 LEU LEU B . n B 1 73 GLY 73 72 72 GLY GLY B . n B 1 74 LYS 74 73 73 LYS LYS B . n B 1 75 LEU 75 74 74 LEU LEU B . n B 1 76 THR 76 75 75 THR THR B . n B 1 77 VAL 77 76 76 VAL VAL B . n B 1 78 VAL 78 77 77 VAL VAL B . n B 1 79 ASP 79 78 78 ASP ASP B . n B 1 80 ALA 80 79 79 ALA ALA B . n B 1 81 THR 81 80 80 THR THR B . n B 1 82 ASN 82 81 81 ASN ASN B . n B 1 83 VAL 83 82 82 VAL VAL B . n B 1 84 GLN 84 83 83 GLN GLN B . n B 1 85 GLU 85 84 84 GLU GLU B . n B 1 86 SER 86 85 85 SER SER B . n B 1 87 ALA 87 86 86 ALA ALA B . n B 1 88 ARG 88 87 87 ARG ARG B . n B 1 89 LYS 89 88 88 LYS LYS B . n B 1 90 PRO 90 89 89 PRO PRO B . n B 1 91 LEU 91 90 90 LEU LEU B . n B 1 92 ILE 92 91 91 ILE ILE B . n B 1 93 GLU 93 92 92 GLU GLU B . n B 1 94 ILE 94 93 93 ILE ILE B . n B 1 95 ALA 95 94 94 ALA ALA B . n B 1 96 LYS 96 95 95 LYS LYS B . n B 1 97 ASP 97 96 96 ASP ASP B . n B 1 98 TYR 98 97 97 TYR TYR B . n B 1 99 HIS 99 98 98 HIS HIS B . n B 1 100 CYS 100 99 99 CYS CYS B . n B 1 101 PHE 101 100 100 PHE PHE B . n B 1 102 PRO 102 101 101 PRO PRO B . n B 1 103 VAL 103 102 102 VAL VAL B . n B 1 104 ALA 104 103 103 ALA ALA B . n B 1 105 VAL 105 104 104 VAL VAL B . n B 1 106 VAL 106 105 105 VAL VAL B . n B 1 107 PHE 107 106 106 PHE PHE B . n B 1 108 ASN 108 107 107 ASN ASN B . n B 1 109 LEU 109 108 108 LEU LEU B . n B 1 110 PRO 110 109 109 PRO PRO B . n B 1 111 GLU 111 110 110 GLU GLU B . n B 1 112 LYS 112 111 111 LYS LYS B . n B 1 113 VAL 113 112 112 VAL VAL B . n B 1 114 CYS 114 113 113 CYS CYS B . n B 1 115 GLN 115 114 114 GLN GLN B . n B 1 116 GLU 116 115 115 GLU GLU B . n B 1 117 ARG 117 116 116 ARG ARG B . n B 1 118 ASN 118 117 117 ASN ASN B . n B 1 119 LYS 119 118 118 LYS LYS B . n B 1 120 ASN 120 119 119 ASN ASN B . n B 1 121 ARG 121 120 120 ARG ARG B . n B 1 122 THR 122 121 121 THR THR B . n B 1 123 ASP 123 122 122 ASP ASP B . n B 1 124 ARG 124 123 123 ARG ARG B . n B 1 125 GLN 125 124 124 GLN GLN B . n B 1 126 VAL 126 125 125 VAL VAL B . n B 1 127 GLU 127 126 126 GLU GLU B . n B 1 128 GLU 128 127 127 GLU GLU B . n B 1 129 TYR 129 128 128 TYR TYR B . n B 1 130 VAL 130 129 129 VAL VAL B . n B 1 131 ILE 131 130 130 ILE ILE B . n B 1 132 ARG 132 131 131 ARG ARG B . n B 1 133 LYS 133 132 132 LYS LYS B . n B 1 134 HIS 134 133 133 HIS HIS B . n B 1 135 THR 135 134 134 THR THR B . n B 1 136 GLN 136 135 135 GLN GLN B . n B 1 137 GLN 137 136 136 GLN GLN B . n B 1 138 MSE 138 137 137 MSE MSE B . n B 1 139 LYS 139 138 138 LYS LYS B . n B 1 140 LYS 140 139 139 LYS LYS B . n B 1 141 SER 141 140 140 SER SER B . n B 1 142 ILE 142 141 141 ILE ILE B . n B 1 143 LYS 143 142 142 LYS LYS B . n B 1 144 GLY 144 143 143 GLY GLY B . n B 1 145 LEU 145 144 144 LEU LEU B . n B 1 146 GLN 146 145 145 GLN GLN B . n B 1 147 ARG 147 146 146 ARG ARG B . n B 1 148 GLU 148 147 147 GLU GLU B . n B 1 149 GLY 149 148 148 GLY GLY B . n B 1 150 PHE 150 149 149 PHE PHE B . n B 1 151 ARG 151 150 150 ARG ARG B . n B 1 152 TYR 152 151 151 TYR TYR B . n B 1 153 VAL 153 152 152 VAL VAL B . n B 1 154 TYR 154 153 153 TYR TYR B . n B 1 155 ILE 155 154 154 ILE ILE B . n B 1 156 LEU 156 155 155 LEU LEU B . n B 1 157 ASN 157 156 156 ASN ASN B . n B 1 158 SER 158 157 157 SER SER B . n B 1 159 PRO 159 158 158 PRO PRO B . n B 1 160 GLU 160 159 159 GLU GLU B . n B 1 161 GLU 161 160 160 GLU GLU B . n B 1 162 VAL 162 161 161 VAL VAL B . n B 1 163 GLU 163 162 162 GLU GLU B . n B 1 164 GLU 164 163 163 GLU GLU B . n B 1 165 VAL 165 164 164 VAL VAL B . n B 1 166 VAL 166 165 165 VAL VAL B . n B 1 167 PHE 167 166 166 PHE PHE B . n B 1 168 GLU 168 167 167 GLU GLU B . n B 1 169 ARG 169 168 168 ARG ARG B . n B 1 170 GLN 170 169 169 GLN GLN B . n B 1 171 PRO 171 170 170 PRO PRO B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DT 3 3 3 DT DT C . n C 2 4 DG 4 4 4 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GTP 1 1001 1001 GTP GTP A . E 4 MG 1 1002 1 MG MG A . F 3 GTP 1 1001 1001 GTP GTP B . G 4 MG 1 1002 1 MG MG B . H 5 HOH 1 1101 5 HOH HOH A . H 5 HOH 2 1102 6 HOH HOH A . H 5 HOH 3 1103 7 HOH HOH A . H 5 HOH 4 1104 10 HOH HOH A . H 5 HOH 5 1105 11 HOH HOH A . H 5 HOH 6 1106 12 HOH HOH A . H 5 HOH 7 1107 13 HOH HOH A . H 5 HOH 8 1108 14 HOH HOH A . H 5 HOH 9 1109 16 HOH HOH A . H 5 HOH 10 1110 17 HOH HOH A . H 5 HOH 11 1111 19 HOH HOH A . H 5 HOH 12 1112 22 HOH HOH A . H 5 HOH 13 1113 23 HOH HOH A . H 5 HOH 14 1114 25 HOH HOH A . H 5 HOH 15 1115 26 HOH HOH A . H 5 HOH 16 1116 27 HOH HOH A . H 5 HOH 17 1117 35 HOH HOH A . H 5 HOH 18 1118 36 HOH HOH A . H 5 HOH 19 1119 38 HOH HOH A . H 5 HOH 20 1120 41 HOH HOH A . H 5 HOH 21 1121 42 HOH HOH A . H 5 HOH 22 1122 43 HOH HOH A . H 5 HOH 23 1123 45 HOH HOH A . H 5 HOH 24 1124 46 HOH HOH A . H 5 HOH 25 1125 48 HOH HOH A . H 5 HOH 26 1126 49 HOH HOH A . H 5 HOH 27 1127 51 HOH HOH A . H 5 HOH 28 1128 52 HOH HOH A . H 5 HOH 29 1129 55 HOH HOH A . H 5 HOH 30 1130 57 HOH HOH A . H 5 HOH 31 1131 58 HOH HOH A . H 5 HOH 32 1132 59 HOH HOH A . H 5 HOH 33 1133 61 HOH HOH A . H 5 HOH 34 1134 64 HOH HOH A . H 5 HOH 35 1135 65 HOH HOH A . H 5 HOH 36 1136 68 HOH HOH A . H 5 HOH 37 1137 69 HOH HOH A . H 5 HOH 38 1138 70 HOH HOH A . H 5 HOH 39 1139 71 HOH HOH A . H 5 HOH 40 1140 73 HOH HOH A . H 5 HOH 41 1141 74 HOH HOH A . H 5 HOH 42 1142 79 HOH HOH A . H 5 HOH 43 1143 81 HOH HOH A . H 5 HOH 44 1144 82 HOH HOH A . H 5 HOH 45 1145 85 HOH HOH A . H 5 HOH 46 1146 86 HOH HOH A . H 5 HOH 47 1147 87 HOH HOH A . H 5 HOH 48 1148 90 HOH HOH A . H 5 HOH 49 1149 91 HOH HOH A . H 5 HOH 50 1150 95 HOH HOH A . H 5 HOH 51 1151 98 HOH HOH A . H 5 HOH 52 1152 99 HOH HOH A . H 5 HOH 53 1153 100 HOH HOH A . H 5 HOH 54 1154 101 HOH HOH A . H 5 HOH 55 1155 102 HOH HOH A . H 5 HOH 56 1156 104 HOH HOH A . H 5 HOH 57 1157 105 HOH HOH A . H 5 HOH 58 1158 106 HOH HOH A . H 5 HOH 59 1159 112 HOH HOH A . H 5 HOH 60 1160 117 HOH HOH A . H 5 HOH 61 1161 119 HOH HOH A . H 5 HOH 62 1162 120 HOH HOH A . H 5 HOH 63 1163 121 HOH HOH A . H 5 HOH 64 1164 124 HOH HOH A . H 5 HOH 65 1165 126 HOH HOH A . H 5 HOH 66 1166 127 HOH HOH A . H 5 HOH 67 1167 128 HOH HOH A . H 5 HOH 68 1168 131 HOH HOH A . H 5 HOH 69 1169 132 HOH HOH A . H 5 HOH 70 1170 133 HOH HOH A . H 5 HOH 71 1171 135 HOH HOH A . H 5 HOH 72 1172 136 HOH HOH A . H 5 HOH 73 1173 137 HOH HOH A . H 5 HOH 74 1174 139 HOH HOH A . H 5 HOH 75 1175 140 HOH HOH A . H 5 HOH 76 1176 142 HOH HOH A . H 5 HOH 77 1177 143 HOH HOH A . H 5 HOH 78 1178 144 HOH HOH A . H 5 HOH 79 1179 145 HOH HOH A . H 5 HOH 80 1180 146 HOH HOH A . H 5 HOH 81 1181 148 HOH HOH A . H 5 HOH 82 1182 149 HOH HOH A . H 5 HOH 83 1183 154 HOH HOH A . H 5 HOH 84 1184 155 HOH HOH A . H 5 HOH 85 1185 156 HOH HOH A . H 5 HOH 86 1186 157 HOH HOH A . H 5 HOH 87 1187 159 HOH HOH A . H 5 HOH 88 1188 160 HOH HOH A . H 5 HOH 89 1189 161 HOH HOH A . H 5 HOH 90 1190 164 HOH HOH A . H 5 HOH 91 1191 165 HOH HOH A . H 5 HOH 92 1192 167 HOH HOH A . H 5 HOH 93 1193 169 HOH HOH A . H 5 HOH 94 1194 173 HOH HOH A . H 5 HOH 95 1195 174 HOH HOH A . H 5 HOH 96 1196 176 HOH HOH A . H 5 HOH 97 1197 177 HOH HOH A . H 5 HOH 98 1198 178 HOH HOH A . H 5 HOH 99 1199 180 HOH HOH A . H 5 HOH 100 1200 184 HOH HOH A . H 5 HOH 101 1201 190 HOH HOH A . H 5 HOH 102 1202 194 HOH HOH A . H 5 HOH 103 1203 199 HOH HOH A . H 5 HOH 104 1204 202 HOH HOH A . H 5 HOH 105 1205 205 HOH HOH A . H 5 HOH 106 1206 206 HOH HOH A . H 5 HOH 107 1207 209 HOH HOH A . H 5 HOH 108 1208 211 HOH HOH A . H 5 HOH 109 1209 212 HOH HOH A . H 5 HOH 110 1210 215 HOH HOH A . H 5 HOH 111 1211 217 HOH HOH A . H 5 HOH 112 1212 220 HOH HOH A . H 5 HOH 113 1213 222 HOH HOH A . H 5 HOH 114 1214 223 HOH HOH A . H 5 HOH 115 1215 225 HOH HOH A . H 5 HOH 116 1216 226 HOH HOH A . H 5 HOH 117 1217 227 HOH HOH A . H 5 HOH 118 1218 232 HOH HOH A . H 5 HOH 119 1219 233 HOH HOH A . H 5 HOH 120 1220 237 HOH HOH A . H 5 HOH 121 1221 238 HOH HOH A . H 5 HOH 122 1222 241 HOH HOH A . H 5 HOH 123 1223 242 HOH HOH A . H 5 HOH 124 1224 243 HOH HOH A . H 5 HOH 125 1225 244 HOH HOH A . H 5 HOH 126 1226 246 HOH HOH A . H 5 HOH 127 1227 247 HOH HOH A . H 5 HOH 128 1228 248 HOH HOH A . H 5 HOH 129 1229 251 HOH HOH A . H 5 HOH 130 1230 252 HOH HOH A . H 5 HOH 131 1231 254 HOH HOH A . H 5 HOH 132 1232 256 HOH HOH A . H 5 HOH 133 1233 259 HOH HOH A . H 5 HOH 134 1234 260 HOH HOH A . H 5 HOH 135 1235 261 HOH HOH A . H 5 HOH 136 1236 265 HOH HOH A . H 5 HOH 137 1237 266 HOH HOH A . H 5 HOH 138 1238 269 HOH HOH A . H 5 HOH 139 1239 273 HOH HOH A . H 5 HOH 140 1240 274 HOH HOH A . H 5 HOH 141 1241 275 HOH HOH A . H 5 HOH 142 1242 276 HOH HOH A . H 5 HOH 143 1243 278 HOH HOH A . H 5 HOH 144 1244 279 HOH HOH A . H 5 HOH 145 1245 282 HOH HOH A . H 5 HOH 146 1246 285 HOH HOH A . H 5 HOH 147 1247 287 HOH HOH A . H 5 HOH 148 1248 291 HOH HOH A . H 5 HOH 149 1249 292 HOH HOH A . H 5 HOH 150 1250 293 HOH HOH A . H 5 HOH 151 1251 294 HOH HOH A . H 5 HOH 152 1252 295 HOH HOH A . H 5 HOH 153 1253 297 HOH HOH A . H 5 HOH 154 1254 298 HOH HOH A . H 5 HOH 155 1255 300 HOH HOH A . H 5 HOH 156 1256 301 HOH HOH A . H 5 HOH 157 1257 302 HOH HOH A . H 5 HOH 158 1258 304 HOH HOH A . H 5 HOH 159 1259 305 HOH HOH A . H 5 HOH 160 1260 310 HOH HOH A . H 5 HOH 161 1261 311 HOH HOH A . H 5 HOH 162 1262 318 HOH HOH A . H 5 HOH 163 1263 321 HOH HOH A . H 5 HOH 164 1264 322 HOH HOH A . H 5 HOH 165 1265 323 HOH HOH A . H 5 HOH 166 1266 325 HOH HOH A . H 5 HOH 167 1267 327 HOH HOH A . H 5 HOH 168 1268 329 HOH HOH A . H 5 HOH 169 1269 335 HOH HOH A . H 5 HOH 170 1270 336 HOH HOH A . H 5 HOH 171 1271 338 HOH HOH A . H 5 HOH 172 1272 341 HOH HOH A . H 5 HOH 173 1273 342 HOH HOH A . H 5 HOH 174 1274 343 HOH HOH A . H 5 HOH 175 1275 344 HOH HOH A . H 5 HOH 176 1276 347 HOH HOH A . H 5 HOH 177 1277 350 HOH HOH A . H 5 HOH 178 1278 353 HOH HOH A . H 5 HOH 179 1279 357 HOH HOH A . H 5 HOH 180 1280 122 HOH HOH A . I 5 HOH 1 1101 1 HOH HOH B . I 5 HOH 2 1102 2 HOH HOH B . I 5 HOH 3 1103 3 HOH HOH B . I 5 HOH 4 1104 4 HOH HOH B . I 5 HOH 5 1105 9 HOH HOH B . I 5 HOH 6 1106 15 HOH HOH B . I 5 HOH 7 1107 18 HOH HOH B . I 5 HOH 8 1108 20 HOH HOH B . I 5 HOH 9 1109 21 HOH HOH B . I 5 HOH 10 1110 24 HOH HOH B . I 5 HOH 11 1111 28 HOH HOH B . I 5 HOH 12 1112 29 HOH HOH B . I 5 HOH 13 1113 30 HOH HOH B . I 5 HOH 14 1114 31 HOH HOH B . I 5 HOH 15 1115 32 HOH HOH B . I 5 HOH 16 1116 33 HOH HOH B . I 5 HOH 17 1117 34 HOH HOH B . I 5 HOH 18 1118 37 HOH HOH B . I 5 HOH 19 1119 39 HOH HOH B . I 5 HOH 20 1120 40 HOH HOH B . I 5 HOH 21 1121 44 HOH HOH B . I 5 HOH 22 1122 47 HOH HOH B . I 5 HOH 23 1123 50 HOH HOH B . I 5 HOH 24 1124 53 HOH HOH B . I 5 HOH 25 1125 54 HOH HOH B . I 5 HOH 26 1126 60 HOH HOH B . I 5 HOH 27 1127 62 HOH HOH B . I 5 HOH 28 1128 63 HOH HOH B . I 5 HOH 29 1129 67 HOH HOH B . I 5 HOH 30 1130 72 HOH HOH B . I 5 HOH 31 1131 75 HOH HOH B . I 5 HOH 32 1132 76 HOH HOH B . I 5 HOH 33 1133 77 HOH HOH B . I 5 HOH 34 1134 78 HOH HOH B . I 5 HOH 35 1135 80 HOH HOH B . I 5 HOH 36 1136 83 HOH HOH B . I 5 HOH 37 1137 84 HOH HOH B . I 5 HOH 38 1138 88 HOH HOH B . I 5 HOH 39 1139 89 HOH HOH B . I 5 HOH 40 1140 92 HOH HOH B . I 5 HOH 41 1141 93 HOH HOH B . I 5 HOH 42 1142 94 HOH HOH B . I 5 HOH 43 1143 96 HOH HOH B . I 5 HOH 44 1144 97 HOH HOH B . I 5 HOH 45 1145 103 HOH HOH B . I 5 HOH 46 1146 107 HOH HOH B . I 5 HOH 47 1147 108 HOH HOH B . I 5 HOH 48 1148 109 HOH HOH B . I 5 HOH 49 1149 110 HOH HOH B . I 5 HOH 50 1150 111 HOH HOH B . I 5 HOH 51 1151 113 HOH HOH B . I 5 HOH 52 1152 114 HOH HOH B . I 5 HOH 53 1153 115 HOH HOH B . I 5 HOH 54 1154 116 HOH HOH B . I 5 HOH 55 1155 118 HOH HOH B . I 5 HOH 56 1156 123 HOH HOH B . I 5 HOH 57 1157 125 HOH HOH B . I 5 HOH 58 1158 129 HOH HOH B . I 5 HOH 59 1159 130 HOH HOH B . I 5 HOH 60 1160 134 HOH HOH B . I 5 HOH 61 1161 138 HOH HOH B . I 5 HOH 62 1162 141 HOH HOH B . I 5 HOH 63 1163 147 HOH HOH B . I 5 HOH 64 1164 150 HOH HOH B . I 5 HOH 65 1165 151 HOH HOH B . I 5 HOH 66 1166 153 HOH HOH B . I 5 HOH 67 1167 158 HOH HOH B . I 5 HOH 68 1168 162 HOH HOH B . I 5 HOH 69 1169 163 HOH HOH B . I 5 HOH 70 1170 166 HOH HOH B . I 5 HOH 71 1171 168 HOH HOH B . I 5 HOH 72 1172 170 HOH HOH B . I 5 HOH 73 1173 171 HOH HOH B . I 5 HOH 74 1174 172 HOH HOH B . I 5 HOH 75 1175 179 HOH HOH B . I 5 HOH 76 1176 181 HOH HOH B . I 5 HOH 77 1177 182 HOH HOH B . I 5 HOH 78 1178 183 HOH HOH B . I 5 HOH 79 1179 185 HOH HOH B . I 5 HOH 80 1180 186 HOH HOH B . I 5 HOH 81 1181 187 HOH HOH B . I 5 HOH 82 1182 188 HOH HOH B . I 5 HOH 83 1183 189 HOH HOH B . I 5 HOH 84 1184 191 HOH HOH B . I 5 HOH 85 1185 192 HOH HOH B . I 5 HOH 86 1186 193 HOH HOH B . I 5 HOH 87 1187 195 HOH HOH B . I 5 HOH 88 1188 196 HOH HOH B . I 5 HOH 89 1189 197 HOH HOH B . I 5 HOH 90 1190 198 HOH HOH B . I 5 HOH 91 1191 200 HOH HOH B . I 5 HOH 92 1192 201 HOH HOH B . I 5 HOH 93 1193 203 HOH HOH B . I 5 HOH 94 1194 204 HOH HOH B . I 5 HOH 95 1195 207 HOH HOH B . I 5 HOH 96 1196 208 HOH HOH B . I 5 HOH 97 1197 210 HOH HOH B . I 5 HOH 98 1198 213 HOH HOH B . I 5 HOH 99 1199 214 HOH HOH B . I 5 HOH 100 1200 216 HOH HOH B . I 5 HOH 101 1201 218 HOH HOH B . I 5 HOH 102 1202 221 HOH HOH B . I 5 HOH 103 1203 224 HOH HOH B . I 5 HOH 104 1204 228 HOH HOH B . I 5 HOH 105 1205 229 HOH HOH B . I 5 HOH 106 1206 230 HOH HOH B . I 5 HOH 107 1207 231 HOH HOH B . I 5 HOH 108 1208 235 HOH HOH B . I 5 HOH 109 1209 236 HOH HOH B . I 5 HOH 110 1210 239 HOH HOH B . I 5 HOH 111 1211 240 HOH HOH B . I 5 HOH 112 1212 245 HOH HOH B . I 5 HOH 113 1213 249 HOH HOH B . I 5 HOH 114 1214 250 HOH HOH B . I 5 HOH 115 1215 255 HOH HOH B . I 5 HOH 116 1216 258 HOH HOH B . I 5 HOH 117 1217 262 HOH HOH B . I 5 HOH 118 1218 263 HOH HOH B . I 5 HOH 119 1219 264 HOH HOH B . I 5 HOH 120 1220 267 HOH HOH B . I 5 HOH 121 1221 268 HOH HOH B . I 5 HOH 122 1222 270 HOH HOH B . I 5 HOH 123 1223 271 HOH HOH B . I 5 HOH 124 1224 272 HOH HOH B . I 5 HOH 125 1225 277 HOH HOH B . I 5 HOH 126 1226 280 HOH HOH B . I 5 HOH 127 1227 281 HOH HOH B . I 5 HOH 128 1228 283 HOH HOH B . I 5 HOH 129 1229 284 HOH HOH B . I 5 HOH 130 1230 286 HOH HOH B . I 5 HOH 131 1231 288 HOH HOH B . I 5 HOH 132 1232 289 HOH HOH B . I 5 HOH 133 1233 290 HOH HOH B . I 5 HOH 134 1234 296 HOH HOH B . I 5 HOH 135 1235 303 HOH HOH B . I 5 HOH 136 1236 306 HOH HOH B . I 5 HOH 137 1237 307 HOH HOH B . I 5 HOH 138 1238 308 HOH HOH B . I 5 HOH 139 1239 309 HOH HOH B . I 5 HOH 140 1240 312 HOH HOH B . I 5 HOH 141 1241 314 HOH HOH B . I 5 HOH 142 1242 315 HOH HOH B . I 5 HOH 143 1243 316 HOH HOH B . I 5 HOH 144 1244 317 HOH HOH B . I 5 HOH 145 1245 319 HOH HOH B . I 5 HOH 146 1246 320 HOH HOH B . I 5 HOH 147 1247 324 HOH HOH B . I 5 HOH 148 1248 328 HOH HOH B . I 5 HOH 149 1249 330 HOH HOH B . I 5 HOH 150 1250 331 HOH HOH B . I 5 HOH 151 1251 332 HOH HOH B . I 5 HOH 152 1252 333 HOH HOH B . I 5 HOH 153 1253 334 HOH HOH B . I 5 HOH 154 1254 339 HOH HOH B . I 5 HOH 155 1255 340 HOH HOH B . I 5 HOH 156 1256 345 HOH HOH B . I 5 HOH 157 1257 346 HOH HOH B . I 5 HOH 158 1258 348 HOH HOH B . I 5 HOH 159 1259 349 HOH HOH B . I 5 HOH 160 1260 351 HOH HOH B . I 5 HOH 161 1261 352 HOH HOH B . I 5 HOH 162 1262 354 HOH HOH B . I 5 HOH 163 1263 355 HOH HOH B . I 5 HOH 164 1264 356 HOH HOH B . J 5 HOH 1 101 8 HOH HOH C . J 5 HOH 2 102 56 HOH HOH C . J 5 HOH 3 103 66 HOH HOH C . J 5 HOH 4 104 152 HOH HOH C . J 5 HOH 5 105 175 HOH HOH C . J 5 HOH 6 106 219 HOH HOH C . J 5 HOH 7 107 234 HOH HOH C . J 5 HOH 8 108 253 HOH HOH C . J 5 HOH 9 109 257 HOH HOH C . J 5 HOH 10 110 299 HOH HOH C . J 5 HOH 11 111 313 HOH HOH C . J 5 HOH 12 112 326 HOH HOH C . J 5 HOH 13 113 337 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 44 ? MET SELENOMETHIONINE 3 A MSE 138 A MSE 137 ? MET SELENOMETHIONINE 4 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 5 B MSE 45 B MSE 44 ? MET SELENOMETHIONINE 6 B MSE 138 B MSE 137 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? B SER 23 ? B SER 22 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O3G ? F GTP . ? B GTP 1001 ? 1_555 178.0 ? 2 OG ? B SER 23 ? B SER 22 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O1B ? F GTP . ? B GTP 1001 ? 1_555 88.2 ? 3 O3G ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O1B ? F GTP . ? B GTP 1001 ? 1_555 91.4 ? 4 OG ? B SER 23 ? B SER 22 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1103 ? 1_555 90.3 ? 5 O3G ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1103 ? 1_555 87.7 ? 6 O1B ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1103 ? 1_555 92.3 ? 7 OG ? B SER 23 ? B SER 22 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1102 ? 1_555 88.0 ? 8 O3G ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1102 ? 1_555 94.0 ? 9 O1B ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1102 ? 1_555 88.8 ? 10 O ? I HOH . ? B HOH 1103 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1102 ? 1_555 177.9 ? 11 OG ? B SER 23 ? B SER 22 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1104 ? 1_555 87.0 ? 12 O3G ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1104 ? 1_555 93.4 ? 13 O1B ? F GTP . ? B GTP 1001 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1104 ? 1_555 175.1 ? 14 O ? I HOH . ? B HOH 1103 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1104 ? 1_555 89.0 ? 15 O ? I HOH . ? B HOH 1102 ? 1_555 MG ? G MG . ? B MG 1002 ? 1_555 O ? I HOH . ? B HOH 1104 ? 1_555 89.8 ? 16 OG ? A SER 23 ? A SER 22 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O3G ? D GTP . ? A GTP 1001 ? 1_555 177.7 ? 17 OG ? A SER 23 ? A SER 22 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O1B ? D GTP . ? A GTP 1001 ? 1_555 87.9 ? 18 O3G ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O1B ? D GTP . ? A GTP 1001 ? 1_555 90.3 ? 19 OG ? A SER 23 ? A SER 22 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1103 ? 1_555 85.2 ? 20 O3G ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1103 ? 1_555 93.4 ? 21 O1B ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1103 ? 1_555 92.7 ? 22 OG ? A SER 23 ? A SER 22 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1102 ? 1_555 89.8 ? 23 O3G ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1102 ? 1_555 92.1 ? 24 O1B ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1102 ? 1_555 176.5 ? 25 O ? H HOH . ? A HOH 1103 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1102 ? 1_555 89.7 ? 26 OG ? A SER 23 ? A SER 22 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1101 ? 1_555 89.6 ? 27 O3G ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1101 ? 1_555 91.9 ? 28 O1B ? D GTP . ? A GTP 1001 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1101 ? 1_555 88.6 ? 29 O ? H HOH . ? A HOH 1103 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1101 ? 1_555 174.5 ? 30 O ? H HOH . ? A HOH 1102 ? 1_555 MG ? E MG . ? A MG 1002 ? 1_555 O ? H HOH . ? A HOH 1101 ? 1_555 88.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-08 2 'Structure model' 1 1 2015-02-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 MOSFLM 'data reduction' . ? 4 Aimless 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 1187 ? ? O B HOH 1210 ? ? 2.03 2 1 O A HOH 1252 ? ? O B HOH 1199 ? ? 2.12 3 1 NE2 B GLN 136 ? ? O B HOH 1250 ? ? 2.13 4 1 O B GLN 169 ? ? O B HOH 1181 ? ? 2.14 5 1 O A HOH 1276 ? ? O B HOH 1262 ? ? 2.15 6 1 O B HOH 1246 ? ? O B HOH 1256 ? ? 2.17 7 1 O A HOH 1215 ? ? O A HOH 1264 ? ? 2.17 8 1 O A HOH 1192 ? ? O A HOH 1224 ? ? 2.17 9 1 OD2 B ASP 38 ? A O B HOH 1190 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB B CYS 99 ? B SG B CYS 99 ? B 1.689 1.812 -0.123 0.016 N 2 1 P C DC 1 ? ? OP3 C DC 1 ? ? 1.471 1.607 -0.136 0.012 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 123 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 123 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 123 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.87 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.57 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 49 ? ? -106.77 45.57 2 1 ARG A 123 ? ? -169.34 113.06 3 1 ASP B 122 ? ? -103.49 -62.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 51 ? CG ? A GLN 52 CG 2 1 Y 1 A GLN 51 ? CD ? A GLN 52 CD 3 1 Y 1 A GLN 51 ? OE1 ? A GLN 52 OE1 4 1 Y 1 A GLN 51 ? NE2 ? A GLN 52 NE2 5 1 Y 1 A LYS 111 ? CG ? A LYS 112 CG 6 1 Y 1 A LYS 111 ? CD ? A LYS 112 CD 7 1 Y 1 A LYS 111 ? CE ? A LYS 112 CE 8 1 Y 1 A LYS 111 ? NZ ? A LYS 112 NZ 9 1 Y 1 A GLU 115 ? CG ? A GLU 116 CG 10 1 Y 1 A GLU 115 ? CD ? A GLU 116 CD 11 1 Y 1 A GLU 115 ? OE1 ? A GLU 116 OE1 12 1 Y 1 A GLU 115 ? OE2 ? A GLU 116 OE2 13 1 Y 1 B GLU 48 ? CG ? B GLU 49 CG 14 1 Y 1 B GLU 48 ? CD ? B GLU 49 CD 15 1 Y 1 B GLU 48 ? OE1 ? B GLU 49 OE1 16 1 Y 1 B GLU 48 ? OE2 ? B GLU 49 OE2 17 1 Y 1 C DG 4 ? "C5'" ? C DG 4 "C5'" 18 1 Y 1 C DG 4 ? "C4'" ? C DG 4 "C4'" 19 1 Y 1 C DG 4 ? "O4'" ? C DG 4 "O4'" 20 1 Y 1 C DG 4 ? "C3'" ? C DG 4 "C3'" 21 1 Y 1 C DG 4 ? "O3'" ? C DG 4 "O3'" 22 1 Y 1 C DG 4 ? "C2'" ? C DG 4 "C2'" 23 1 Y 1 C DG 4 ? "C1'" ? C DG 4 "C1'" 24 1 Y 1 C DG 4 ? N9 ? C DG 4 N9 25 1 Y 1 C DG 4 ? C8 ? C DG 4 C8 26 1 Y 1 C DG 4 ? N7 ? C DG 4 N7 27 1 Y 1 C DG 4 ? C5 ? C DG 4 C5 28 1 Y 1 C DG 4 ? C6 ? C DG 4 C6 29 1 Y 1 C DG 4 ? O6 ? C DG 4 O6 30 1 Y 1 C DG 4 ? N1 ? C DG 4 N1 31 1 Y 1 C DG 4 ? C2 ? C DG 4 C2 32 1 Y 1 C DG 4 ? N2 ? C DG 4 N2 33 1 Y 1 C DG 4 ? N3 ? C DG 4 N3 34 1 Y 1 C DG 4 ? C4 ? C DG 4 C4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "GUANOSINE-5'-TRIPHOSPHATE" GTP 4 'MAGNESIUM ION' MG 5 water HOH #