data_4QR7 # _entry.id 4QR7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.354 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QR7 pdb_00004qr7 10.2210/pdb4qr7/pdb RCSB RCSB086410 ? ? WWPDB D_1000086410 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4QRA . unspecified PDB 4QRB . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QR7 _pdbx_database_status.recvd_initial_deposition_date 2014-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gokulan, K.' 1 'Varughese, K.I.' 2 # _citation.id primary _citation.title ;Structure and specificity of L-D-Transpeptidase from Mycobacterium tuberculosis and antibiotic resistance: Calcium binding promotes dimer formation ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gokulan, K.' 1 ? primary 'Khare, S.' 2 ? primary 'Cerniglia, C.E.' 3 ? primary 'Foley, S.L.' 4 ? primary 'Varughese, K.I.' 5 ? # _cell.entry_id 4QR7 _cell.length_a 57.330 _cell.length_b 66.459 _cell.length_c 206.865 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QR7 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'L,d-transpeptidase LdtB' 37678.844 1 ? ? ? ? 2 non-polymer syn 'GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA' 921.899 1 ? ? ? ? 3 non-polymer syn ;(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid ; 385.478 1 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Probable L,D-transpeptidase LdtB' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LLVPKLTASVTDGAVGVTVDAPVSVTAADGVLAAVTMVNDNGRPVAGRLSPDGLRWSTTEQLGYNRRYTLNATALGLGGA ATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRPEHFW KPGTAVDVAVNTYGVDLGEGMFGEDNVQTHFTIGDEVIATADDNTKILTVRVNGEVVKSMPTSMGKDSTPTANGIYIVGS RYKHIIMDSSTYGVPVNSPNGYRTDVDWATQISYSGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVE VVNTVGGTLPGIDGLGDWNIPWDQWRAGNAKA ; _entity_poly.pdbx_seq_one_letter_code_can ;LLVPKLTASVTDGAVGVTVDAPVSVTAADGVLAAVTMVNDNGRPVAGRLSPDGLRWSTTEQLGYNRRYTLNATALGLGGA ATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRPEHFW KPGTAVDVAVNTYGVDLGEGMFGEDNVQTHFTIGDEVIATADDNTKILTVRVNGEVVKSMPTSMGKDSTPTANGIYIVGS RYKHIIMDSSTYGVPVNSPNGYRTDVDWATQISYSGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVE VVNTVGGTLPGIDGLGDWNIPWDQWRAGNAKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 LEU n 1 3 VAL n 1 4 PRO n 1 5 LYS n 1 6 LEU n 1 7 THR n 1 8 ALA n 1 9 SER n 1 10 VAL n 1 11 THR n 1 12 ASP n 1 13 GLY n 1 14 ALA n 1 15 VAL n 1 16 GLY n 1 17 VAL n 1 18 THR n 1 19 VAL n 1 20 ASP n 1 21 ALA n 1 22 PRO n 1 23 VAL n 1 24 SER n 1 25 VAL n 1 26 THR n 1 27 ALA n 1 28 ALA n 1 29 ASP n 1 30 GLY n 1 31 VAL n 1 32 LEU n 1 33 ALA n 1 34 ALA n 1 35 VAL n 1 36 THR n 1 37 MET n 1 38 VAL n 1 39 ASN n 1 40 ASP n 1 41 ASN n 1 42 GLY n 1 43 ARG n 1 44 PRO n 1 45 VAL n 1 46 ALA n 1 47 GLY n 1 48 ARG n 1 49 LEU n 1 50 SER n 1 51 PRO n 1 52 ASP n 1 53 GLY n 1 54 LEU n 1 55 ARG n 1 56 TRP n 1 57 SER n 1 58 THR n 1 59 THR n 1 60 GLU n 1 61 GLN n 1 62 LEU n 1 63 GLY n 1 64 TYR n 1 65 ASN n 1 66 ARG n 1 67 ARG n 1 68 TYR n 1 69 THR n 1 70 LEU n 1 71 ASN n 1 72 ALA n 1 73 THR n 1 74 ALA n 1 75 LEU n 1 76 GLY n 1 77 LEU n 1 78 GLY n 1 79 GLY n 1 80 ALA n 1 81 ALA n 1 82 THR n 1 83 ARG n 1 84 GLN n 1 85 LEU n 1 86 THR n 1 87 PHE n 1 88 GLN n 1 89 THR n 1 90 SER n 1 91 SER n 1 92 PRO n 1 93 ALA n 1 94 HIS n 1 95 LEU n 1 96 THR n 1 97 MET n 1 98 PRO n 1 99 TYR n 1 100 VAL n 1 101 MET n 1 102 PRO n 1 103 GLY n 1 104 ASP n 1 105 GLY n 1 106 GLU n 1 107 VAL n 1 108 VAL n 1 109 GLY n 1 110 VAL n 1 111 GLY n 1 112 GLU n 1 113 PRO n 1 114 VAL n 1 115 ALA n 1 116 ILE n 1 117 ARG n 1 118 PHE n 1 119 ASP n 1 120 GLU n 1 121 ASN n 1 122 ILE n 1 123 ALA n 1 124 ASP n 1 125 ARG n 1 126 GLY n 1 127 ALA n 1 128 ALA n 1 129 GLU n 1 130 LYS n 1 131 ALA n 1 132 ILE n 1 133 LYS n 1 134 ILE n 1 135 THR n 1 136 THR n 1 137 ASN n 1 138 PRO n 1 139 PRO n 1 140 VAL n 1 141 GLU n 1 142 GLY n 1 143 ALA n 1 144 PHE n 1 145 TYR n 1 146 TRP n 1 147 LEU n 1 148 ASN n 1 149 ASN n 1 150 ARG n 1 151 GLU n 1 152 VAL n 1 153 ARG n 1 154 TRP n 1 155 ARG n 1 156 PRO n 1 157 GLU n 1 158 HIS n 1 159 PHE n 1 160 TRP n 1 161 LYS n 1 162 PRO n 1 163 GLY n 1 164 THR n 1 165 ALA n 1 166 VAL n 1 167 ASP n 1 168 VAL n 1 169 ALA n 1 170 VAL n 1 171 ASN n 1 172 THR n 1 173 TYR n 1 174 GLY n 1 175 VAL n 1 176 ASP n 1 177 LEU n 1 178 GLY n 1 179 GLU n 1 180 GLY n 1 181 MET n 1 182 PHE n 1 183 GLY n 1 184 GLU n 1 185 ASP n 1 186 ASN n 1 187 VAL n 1 188 GLN n 1 189 THR n 1 190 HIS n 1 191 PHE n 1 192 THR n 1 193 ILE n 1 194 GLY n 1 195 ASP n 1 196 GLU n 1 197 VAL n 1 198 ILE n 1 199 ALA n 1 200 THR n 1 201 ALA n 1 202 ASP n 1 203 ASP n 1 204 ASN n 1 205 THR n 1 206 LYS n 1 207 ILE n 1 208 LEU n 1 209 THR n 1 210 VAL n 1 211 ARG n 1 212 VAL n 1 213 ASN n 1 214 GLY n 1 215 GLU n 1 216 VAL n 1 217 VAL n 1 218 LYS n 1 219 SER n 1 220 MET n 1 221 PRO n 1 222 THR n 1 223 SER n 1 224 MET n 1 225 GLY n 1 226 LYS n 1 227 ASP n 1 228 SER n 1 229 THR n 1 230 PRO n 1 231 THR n 1 232 ALA n 1 233 ASN n 1 234 GLY n 1 235 ILE n 1 236 TYR n 1 237 ILE n 1 238 VAL n 1 239 GLY n 1 240 SER n 1 241 ARG n 1 242 TYR n 1 243 LYS n 1 244 HIS n 1 245 ILE n 1 246 ILE n 1 247 MET n 1 248 ASP n 1 249 SER n 1 250 SER n 1 251 THR n 1 252 TYR n 1 253 GLY n 1 254 VAL n 1 255 PRO n 1 256 VAL n 1 257 ASN n 1 258 SER n 1 259 PRO n 1 260 ASN n 1 261 GLY n 1 262 TYR n 1 263 ARG n 1 264 THR n 1 265 ASP n 1 266 VAL n 1 267 ASP n 1 268 TRP n 1 269 ALA n 1 270 THR n 1 271 GLN n 1 272 ILE n 1 273 SER n 1 274 TYR n 1 275 SER n 1 276 GLY n 1 277 VAL n 1 278 PHE n 1 279 VAL n 1 280 HIS n 1 281 SER n 1 282 ALA n 1 283 PRO n 1 284 TRP n 1 285 SER n 1 286 VAL n 1 287 GLY n 1 288 ALA n 1 289 GLN n 1 290 GLY n 1 291 HIS n 1 292 THR n 1 293 ASN n 1 294 THR n 1 295 SER n 1 296 HIS n 1 297 GLY n 1 298 CYS n 1 299 LEU n 1 300 ASN n 1 301 VAL n 1 302 SER n 1 303 PRO n 1 304 SER n 1 305 ASN n 1 306 ALA n 1 307 GLN n 1 308 TRP n 1 309 PHE n 1 310 TYR n 1 311 ASP n 1 312 HIS n 1 313 VAL n 1 314 LYS n 1 315 ARG n 1 316 GLY n 1 317 ASP n 1 318 ILE n 1 319 VAL n 1 320 GLU n 1 321 VAL n 1 322 VAL n 1 323 ASN n 1 324 THR n 1 325 VAL n 1 326 GLY n 1 327 GLY n 1 328 THR n 1 329 LEU n 1 330 PRO n 1 331 GLY n 1 332 ILE n 1 333 ASP n 1 334 GLY n 1 335 LEU n 1 336 GLY n 1 337 ASP n 1 338 TRP n 1 339 ASN n 1 340 ILE n 1 341 PRO n 1 342 TRP n 1 343 ASP n 1 344 GLN n 1 345 TRP n 1 346 ARG n 1 347 ALA n 1 348 GLY n 1 349 ASN n 1 350 ALA n 1 351 LYS n 1 352 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ldtB, Rv2518c, RVBD_2518c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37RV _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'E.coli BL21DE3/pET28b' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code I6Y9J2_MYCTU _struct_ref.pdbx_db_accession I6Y9J2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPKVGIAAQAGRTRVRRAWLTALMMTAVMIGAVACGSGRGPAPIKVIADKGTPFADLLVPKLTASVTDGAVGVTVDAPVS VTAADGVLAAVTMVNDNGRPVAGRLSPDGLRWSTTEQLGYNRRYTLNATALGLGGAATRQLTFQTSSPAHLTMPYVMPGD GEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRPEHFWKPGTAVDVAVNTYGVDLGEGMFGE DNVQTHFTIGDEVIATADDNTKILTVRVNGEVVKSMPTSMGKDSTPTANGIYIVGSRYKHIIMDSSTYGVPVNSPNGYRT DVDWATQISYSGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVEVVNTVGGTLPGIDGLGDWNIPWDQ WRAGNAKA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QR7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 352 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession I6Y9J2 _struct_ref_seq.db_align_beg 57 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 408 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 57 _struct_ref_seq.pdbx_auth_seq_align_end 408 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DWZ non-polymer . ;(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid ; 'Meropenem, bound form' 'C17 H27 N3 O5 S' 385.478 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLD non-polymer . 'GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA' ;2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2-ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELYL-D-ALANINE ; 'C37 H59 N7 O20' 921.899 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4QR7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_percent_sol 52.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '0.2 M sodium malonate (pH 7.0) and 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2011-11-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4QR7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 103.40 _reflns.d_resolution_high 2.3 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0556 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.98 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4QR7 _refine.ls_number_reflns_obs 16293 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.249 _refine.ls_d_res_high 2.303 _refine.ls_percent_reflns_obs 90.80 _refine.ls_R_factor_obs 0.2059 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2028 _refine.ls_R_factor_R_free 0.2681 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 814 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.31 _refine.pdbx_overall_phase_error 25.90 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2634 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 2794 _refine_hist.d_res_high 2.303 _refine_hist.d_res_low 33.249 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 2700 ? 'X-RAY DIFFRACTION' f_angle_d 1.179 ? ? 3697 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 12.874 ? ? 941 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.077 ? ? 414 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 486 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3027 2.4469 2309 0.2416 84.00 0.3368 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.4469 2.6358 2489 0.2438 89.00 0.3054 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.6358 2.9009 2549 0.2387 91.00 0.3097 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.9009 3.3203 2631 0.2302 92.00 0.2888 . . 111 . . . . 'X-RAY DIFFRACTION' . 3.3203 4.1819 2697 0.1881 95.00 0.2622 . . 160 . . . . 'X-RAY DIFFRACTION' . 4.1819 33.2528 2804 0.1672 94.00 0.2113 . . 137 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4QR7 _struct.title ;Structure and specificity of L-D-Transpeptidase from Mycobacterium tuberculosis and antibiotic resistance: Calcium binding promotes dimer formation ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QR7 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Structural Genomics, Enzyme Function Initiative, Center for Structural Genomics of Infectious Diseases, CSGID, L-D-transpeptidase; D-D-transpeptidase; Single anomalous diffraction; imipenem; meropenem; peptidoglycan; beta-lactamase, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 124 ? ALA A 131 ? ASP A 180 ALA A 187 1 ? 8 HELX_P HELX_P2 2 PRO A 283 ? VAL A 286 ? PRO A 339 VAL A 342 5 ? 4 HELX_P HELX_P3 3 SER A 302 ? VAL A 313 ? SER A 358 VAL A 369 1 ? 12 HELX_P HELX_P4 4 GLY A 336 ? ILE A 340 ? GLY A 392 ILE A 396 5 ? 5 HELX_P HELX_P5 5 PRO A 341 ? GLY A 348 ? PRO A 397 GLY A 404 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 298 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id DWZ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id CAA _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 354 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DWZ _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.485 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MET 101 A . ? MET 157 A PRO 102 A ? PRO 158 A 1 -2.91 2 ASN 137 A . ? ASN 193 A PRO 138 A ? PRO 194 A 1 -3.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? D ? 4 ? E ? 4 ? F ? 5 ? G ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? parallel F 4 5 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 5 ? ALA A 8 ? LYS A 61 ALA A 64 A 2 SER A 24 ? ALA A 28 ? SER A 80 ALA A 84 A 3 ARG A 55 ? THR A 58 ? ARG A 111 THR A 114 A 4 GLY A 47 ? LEU A 49 ? GLY A 103 LEU A 105 B 1 VAL A 31 ? VAL A 38 ? VAL A 87 VAL A 94 B 2 ARG A 67 ? LEU A 75 ? ARG A 123 LEU A 131 B 3 ALA A 80 ? GLN A 88 ? ALA A 136 GLN A 144 C 1 HIS A 94 ? THR A 96 ? HIS A 150 THR A 152 C 2 MET A 181 ? GLY A 183 ? MET A 237 GLY A 239 D 1 PRO A 98 ? MET A 101 ? PRO A 154 MET A 157 D 2 VAL A 114 ? PHE A 118 ? VAL A 170 PHE A 174 D 3 GLU A 151 ? PRO A 156 ? GLU A 207 PRO A 212 D 4 GLY A 142 ? TRP A 146 ? GLY A 198 TRP A 202 E 1 VAL A 107 ? VAL A 108 ? VAL A 163 VAL A 164 E 2 VAL A 187 ? ILE A 193 ? VAL A 243 ILE A 249 E 3 ALA A 165 ? VAL A 170 ? ALA A 221 VAL A 226 E 4 ILE A 132 ? ASN A 137 ? ILE A 188 ASN A 193 F 1 GLU A 215 ? PRO A 221 ? GLU A 271 PRO A 277 F 2 ILE A 207 ? VAL A 212 ? ILE A 263 VAL A 268 F 3 VAL A 197 ? ASP A 202 ? VAL A 253 ASP A 258 F 4 ILE A 318 ? VAL A 322 ? ILE A 374 VAL A 378 F 5 GLY A 234 ? ILE A 237 ? GLY A 290 ILE A 293 G 1 ARG A 241 ? ILE A 245 ? ARG A 297 ILE A 301 G 2 VAL A 266 ? GLN A 271 ? VAL A 322 GLN A 327 G 3 PHE A 278 ? SER A 281 ? PHE A 334 SER A 337 G 4 LEU A 299 ? VAL A 301 ? LEU A 355 VAL A 357 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 5 ? N LYS A 61 O ALA A 28 ? O ALA A 84 A 2 3 N VAL A 25 ? N VAL A 81 O TRP A 56 ? O TRP A 112 A 3 4 O SER A 57 ? O SER A 113 N ARG A 48 ? N ARG A 104 B 1 2 N VAL A 31 ? N VAL A 87 O LEU A 75 ? O LEU A 131 B 2 3 N LEU A 70 ? N LEU A 126 O LEU A 85 ? O LEU A 141 C 1 2 N HIS A 94 ? N HIS A 150 O PHE A 182 ? O PHE A 238 D 1 2 N TYR A 99 ? N TYR A 155 O ARG A 117 ? O ARG A 173 D 2 3 N VAL A 114 ? N VAL A 170 O TRP A 154 ? O TRP A 210 D 3 4 O ARG A 153 ? O ARG A 209 N TYR A 145 ? N TYR A 201 E 1 2 N VAL A 108 ? N VAL A 164 O THR A 192 ? O THR A 248 E 2 3 O THR A 189 ? O THR A 245 N VAL A 168 ? N VAL A 224 E 3 4 O ASP A 167 ? O ASP A 223 N THR A 135 ? N THR A 191 F 1 2 O MET A 220 ? O MET A 276 N LEU A 208 ? N LEU A 264 F 2 3 O ARG A 211 ? O ARG A 267 N ILE A 198 ? N ILE A 254 F 3 4 N ALA A 199 ? N ALA A 255 O ILE A 318 ? O ILE A 374 F 4 5 O VAL A 321 ? O VAL A 377 N GLY A 234 ? N GLY A 290 G 1 2 N ILE A 245 ? N ILE A 301 O VAL A 266 ? O VAL A 322 G 2 3 N THR A 270 ? N THR A 326 O VAL A 279 ? O VAL A 335 G 3 4 N PHE A 278 ? N PHE A 334 O LEU A 299 ? O LEU A 355 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MLD 501 ? 10 'BINDING SITE FOR RESIDUE MLD A 501' AC2 Software A DWZ 502 ? 6 'BINDING SITE FOR RESIDUE DWZ A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LEU A 6 ? LEU A 62 . ? 1_555 ? 2 AC1 10 THR A 7 ? THR A 63 . ? 1_555 ? 3 AC1 10 ALA A 8 ? ALA A 64 . ? 1_555 ? 4 AC1 10 SER A 9 ? SER A 65 . ? 1_555 ? 5 AC1 10 SER A 24 ? SER A 80 . ? 1_555 ? 6 AC1 10 ARG A 83 ? ARG A 139 . ? 1_555 ? 7 AC1 10 GLN A 84 ? GLN A 140 . ? 1_555 ? 8 AC1 10 TYR A 99 ? TYR A 155 . ? 8_445 ? 9 AC1 10 HOH D . ? HOH A 615 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 665 . ? 1_555 ? 11 AC2 6 MET A 247 ? MET A 303 . ? 1_555 ? 12 AC2 6 TYR A 252 ? TYR A 308 . ? 1_555 ? 13 AC2 6 TYR A 262 ? TYR A 318 . ? 1_555 ? 14 AC2 6 GLY A 276 ? GLY A 332 . ? 1_555 ? 15 AC2 6 HIS A 296 ? HIS A 352 . ? 1_555 ? 16 AC2 6 CYS A 298 ? CYS A 354 . ? 1_555 ? # _database_PDB_matrix.entry_id 4QR7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4QR7 _atom_sites.fract_transf_matrix[1][1] 0.017443 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004834 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 57 ? ? ? A . n A 1 2 LEU 2 58 ? ? ? A . n A 1 3 VAL 3 59 59 VAL VAL A . n A 1 4 PRO 4 60 60 PRO PRO A . n A 1 5 LYS 5 61 61 LYS LYS A . n A 1 6 LEU 6 62 62 LEU LEU A . n A 1 7 THR 7 63 63 THR THR A . n A 1 8 ALA 8 64 64 ALA ALA A . n A 1 9 SER 9 65 65 SER SER A . n A 1 10 VAL 10 66 66 VAL VAL A . n A 1 11 THR 11 67 67 THR THR A . n A 1 12 ASP 12 68 68 ASP ASP A . n A 1 13 GLY 13 69 69 GLY GLY A . n A 1 14 ALA 14 70 70 ALA ALA A . n A 1 15 VAL 15 71 71 VAL VAL A . n A 1 16 GLY 16 72 72 GLY GLY A . n A 1 17 VAL 17 73 73 VAL VAL A . n A 1 18 THR 18 74 74 THR THR A . n A 1 19 VAL 19 75 75 VAL VAL A . n A 1 20 ASP 20 76 76 ASP ASP A . n A 1 21 ALA 21 77 77 ALA ALA A . n A 1 22 PRO 22 78 78 PRO PRO A . n A 1 23 VAL 23 79 79 VAL VAL A . n A 1 24 SER 24 80 80 SER SER A . n A 1 25 VAL 25 81 81 VAL VAL A . n A 1 26 THR 26 82 82 THR THR A . n A 1 27 ALA 27 83 83 ALA ALA A . n A 1 28 ALA 28 84 84 ALA ALA A . n A 1 29 ASP 29 85 85 ASP ASP A . n A 1 30 GLY 30 86 86 GLY GLY A . n A 1 31 VAL 31 87 87 VAL VAL A . n A 1 32 LEU 32 88 88 LEU LEU A . n A 1 33 ALA 33 89 89 ALA ALA A . n A 1 34 ALA 34 90 90 ALA ALA A . n A 1 35 VAL 35 91 91 VAL VAL A . n A 1 36 THR 36 92 92 THR THR A . n A 1 37 MET 37 93 93 MET MET A . n A 1 38 VAL 38 94 94 VAL VAL A . n A 1 39 ASN 39 95 95 ASN ASN A . n A 1 40 ASP 40 96 96 ASP ASP A . n A 1 41 ASN 41 97 97 ASN ASN A . n A 1 42 GLY 42 98 98 GLY GLY A . n A 1 43 ARG 43 99 99 ARG ARG A . n A 1 44 PRO 44 100 100 PRO PRO A . n A 1 45 VAL 45 101 101 VAL VAL A . n A 1 46 ALA 46 102 102 ALA ALA A . n A 1 47 GLY 47 103 103 GLY GLY A . n A 1 48 ARG 48 104 104 ARG ARG A . n A 1 49 LEU 49 105 105 LEU LEU A . n A 1 50 SER 50 106 106 SER SER A . n A 1 51 PRO 51 107 107 PRO PRO A . n A 1 52 ASP 52 108 108 ASP ASP A . n A 1 53 GLY 53 109 109 GLY GLY A . n A 1 54 LEU 54 110 110 LEU LEU A . n A 1 55 ARG 55 111 111 ARG ARG A . n A 1 56 TRP 56 112 112 TRP TRP A . n A 1 57 SER 57 113 113 SER SER A . n A 1 58 THR 58 114 114 THR THR A . n A 1 59 THR 59 115 115 THR THR A . n A 1 60 GLU 60 116 116 GLU GLU A . n A 1 61 GLN 61 117 117 GLN GLN A . n A 1 62 LEU 62 118 118 LEU LEU A . n A 1 63 GLY 63 119 119 GLY GLY A . n A 1 64 TYR 64 120 120 TYR TYR A . n A 1 65 ASN 65 121 121 ASN ASN A . n A 1 66 ARG 66 122 122 ARG ARG A . n A 1 67 ARG 67 123 123 ARG ARG A . n A 1 68 TYR 68 124 124 TYR TYR A . n A 1 69 THR 69 125 125 THR THR A . n A 1 70 LEU 70 126 126 LEU LEU A . n A 1 71 ASN 71 127 127 ASN ASN A . n A 1 72 ALA 72 128 128 ALA ALA A . n A 1 73 THR 73 129 129 THR THR A . n A 1 74 ALA 74 130 130 ALA ALA A . n A 1 75 LEU 75 131 131 LEU LEU A . n A 1 76 GLY 76 132 132 GLY GLY A . n A 1 77 LEU 77 133 133 LEU LEU A . n A 1 78 GLY 78 134 134 GLY GLY A . n A 1 79 GLY 79 135 135 GLY GLY A . n A 1 80 ALA 80 136 136 ALA ALA A . n A 1 81 ALA 81 137 137 ALA ALA A . n A 1 82 THR 82 138 138 THR THR A . n A 1 83 ARG 83 139 139 ARG ARG A . n A 1 84 GLN 84 140 140 GLN GLN A . n A 1 85 LEU 85 141 141 LEU LEU A . n A 1 86 THR 86 142 142 THR THR A . n A 1 87 PHE 87 143 143 PHE PHE A . n A 1 88 GLN 88 144 144 GLN GLN A . n A 1 89 THR 89 145 145 THR THR A . n A 1 90 SER 90 146 146 SER SER A . n A 1 91 SER 91 147 147 SER SER A . n A 1 92 PRO 92 148 148 PRO PRO A . n A 1 93 ALA 93 149 149 ALA ALA A . n A 1 94 HIS 94 150 150 HIS HIS A . n A 1 95 LEU 95 151 151 LEU LEU A . n A 1 96 THR 96 152 152 THR THR A . n A 1 97 MET 97 153 153 MET MET A . n A 1 98 PRO 98 154 154 PRO PRO A . n A 1 99 TYR 99 155 155 TYR TYR A . n A 1 100 VAL 100 156 156 VAL VAL A . n A 1 101 MET 101 157 157 MET MET A . n A 1 102 PRO 102 158 158 PRO PRO A . n A 1 103 GLY 103 159 159 GLY GLY A . n A 1 104 ASP 104 160 160 ASP ASP A . n A 1 105 GLY 105 161 161 GLY GLY A . n A 1 106 GLU 106 162 162 GLU GLU A . n A 1 107 VAL 107 163 163 VAL VAL A . n A 1 108 VAL 108 164 164 VAL VAL A . n A 1 109 GLY 109 165 165 GLY GLY A . n A 1 110 VAL 110 166 166 VAL VAL A . n A 1 111 GLY 111 167 167 GLY GLY A . n A 1 112 GLU 112 168 168 GLU GLU A . n A 1 113 PRO 113 169 169 PRO PRO A . n A 1 114 VAL 114 170 170 VAL VAL A . n A 1 115 ALA 115 171 171 ALA ALA A . n A 1 116 ILE 116 172 172 ILE ILE A . n A 1 117 ARG 117 173 173 ARG ARG A . n A 1 118 PHE 118 174 174 PHE PHE A . n A 1 119 ASP 119 175 175 ASP ASP A . n A 1 120 GLU 120 176 176 GLU GLU A . n A 1 121 ASN 121 177 177 ASN ASN A . n A 1 122 ILE 122 178 178 ILE ILE A . n A 1 123 ALA 123 179 179 ALA ALA A . n A 1 124 ASP 124 180 180 ASP ASP A . n A 1 125 ARG 125 181 181 ARG ARG A . n A 1 126 GLY 126 182 182 GLY GLY A . n A 1 127 ALA 127 183 183 ALA ALA A . n A 1 128 ALA 128 184 184 ALA ALA A . n A 1 129 GLU 129 185 185 GLU GLU A . n A 1 130 LYS 130 186 186 LYS LYS A . n A 1 131 ALA 131 187 187 ALA ALA A . n A 1 132 ILE 132 188 188 ILE ILE A . n A 1 133 LYS 133 189 189 LYS LYS A . n A 1 134 ILE 134 190 190 ILE ILE A . n A 1 135 THR 135 191 191 THR THR A . n A 1 136 THR 136 192 192 THR THR A . n A 1 137 ASN 137 193 193 ASN ASN A . n A 1 138 PRO 138 194 194 PRO PRO A . n A 1 139 PRO 139 195 195 PRO PRO A . n A 1 140 VAL 140 196 196 VAL VAL A . n A 1 141 GLU 141 197 197 GLU GLU A . n A 1 142 GLY 142 198 198 GLY GLY A . n A 1 143 ALA 143 199 199 ALA ALA A . n A 1 144 PHE 144 200 200 PHE PHE A . n A 1 145 TYR 145 201 201 TYR TYR A . n A 1 146 TRP 146 202 202 TRP TRP A . n A 1 147 LEU 147 203 203 LEU LEU A . n A 1 148 ASN 148 204 204 ASN ASN A . n A 1 149 ASN 149 205 205 ASN ASN A . n A 1 150 ARG 150 206 206 ARG ARG A . n A 1 151 GLU 151 207 207 GLU GLU A . n A 1 152 VAL 152 208 208 VAL VAL A . n A 1 153 ARG 153 209 209 ARG ARG A . n A 1 154 TRP 154 210 210 TRP TRP A . n A 1 155 ARG 155 211 211 ARG ARG A . n A 1 156 PRO 156 212 212 PRO PRO A . n A 1 157 GLU 157 213 213 GLU GLU A . n A 1 158 HIS 158 214 214 HIS HIS A . n A 1 159 PHE 159 215 215 PHE PHE A . n A 1 160 TRP 160 216 216 TRP TRP A . n A 1 161 LYS 161 217 217 LYS LYS A . n A 1 162 PRO 162 218 218 PRO PRO A . n A 1 163 GLY 163 219 219 GLY GLY A . n A 1 164 THR 164 220 220 THR THR A . n A 1 165 ALA 165 221 221 ALA ALA A . n A 1 166 VAL 166 222 222 VAL VAL A . n A 1 167 ASP 167 223 223 ASP ASP A . n A 1 168 VAL 168 224 224 VAL VAL A . n A 1 169 ALA 169 225 225 ALA ALA A . n A 1 170 VAL 170 226 226 VAL VAL A . n A 1 171 ASN 171 227 227 ASN ASN A . n A 1 172 THR 172 228 228 THR THR A . n A 1 173 TYR 173 229 229 TYR TYR A . n A 1 174 GLY 174 230 230 GLY GLY A . n A 1 175 VAL 175 231 231 VAL VAL A . n A 1 176 ASP 176 232 232 ASP ASP A . n A 1 177 LEU 177 233 233 LEU LEU A . n A 1 178 GLY 178 234 234 GLY GLY A . n A 1 179 GLU 179 235 235 GLU GLU A . n A 1 180 GLY 180 236 236 GLY GLY A . n A 1 181 MET 181 237 237 MET MET A . n A 1 182 PHE 182 238 238 PHE PHE A . n A 1 183 GLY 183 239 239 GLY GLY A . n A 1 184 GLU 184 240 240 GLU GLU A . n A 1 185 ASP 185 241 241 ASP ASP A . n A 1 186 ASN 186 242 242 ASN ASN A . n A 1 187 VAL 187 243 243 VAL VAL A . n A 1 188 GLN 188 244 244 GLN GLN A . n A 1 189 THR 189 245 245 THR THR A . n A 1 190 HIS 190 246 246 HIS HIS A . n A 1 191 PHE 191 247 247 PHE PHE A . n A 1 192 THR 192 248 248 THR THR A . n A 1 193 ILE 193 249 249 ILE ILE A . n A 1 194 GLY 194 250 250 GLY GLY A . n A 1 195 ASP 195 251 251 ASP ASP A . n A 1 196 GLU 196 252 252 GLU GLU A . n A 1 197 VAL 197 253 253 VAL VAL A . n A 1 198 ILE 198 254 254 ILE ILE A . n A 1 199 ALA 199 255 255 ALA ALA A . n A 1 200 THR 200 256 256 THR THR A . n A 1 201 ALA 201 257 257 ALA ALA A . n A 1 202 ASP 202 258 258 ASP ASP A . n A 1 203 ASP 203 259 259 ASP ASP A . n A 1 204 ASN 204 260 260 ASN ASN A . n A 1 205 THR 205 261 261 THR THR A . n A 1 206 LYS 206 262 262 LYS LYS A . n A 1 207 ILE 207 263 263 ILE ILE A . n A 1 208 LEU 208 264 264 LEU LEU A . n A 1 209 THR 209 265 265 THR THR A . n A 1 210 VAL 210 266 266 VAL VAL A . n A 1 211 ARG 211 267 267 ARG ARG A . n A 1 212 VAL 212 268 268 VAL VAL A . n A 1 213 ASN 213 269 269 ASN ASN A . n A 1 214 GLY 214 270 270 GLY GLY A . n A 1 215 GLU 215 271 271 GLU GLU A . n A 1 216 VAL 216 272 272 VAL VAL A . n A 1 217 VAL 217 273 273 VAL VAL A . n A 1 218 LYS 218 274 274 LYS LYS A . n A 1 219 SER 219 275 275 SER SER A . n A 1 220 MET 220 276 276 MET MET A . n A 1 221 PRO 221 277 277 PRO PRO A . n A 1 222 THR 222 278 278 THR THR A . n A 1 223 SER 223 279 279 SER SER A . n A 1 224 MET 224 280 280 MET MET A . n A 1 225 GLY 225 281 281 GLY GLY A . n A 1 226 LYS 226 282 282 LYS LYS A . n A 1 227 ASP 227 283 283 ASP ASP A . n A 1 228 SER 228 284 284 SER SER A . n A 1 229 THR 229 285 285 THR THR A . n A 1 230 PRO 230 286 286 PRO PRO A . n A 1 231 THR 231 287 287 THR THR A . n A 1 232 ALA 232 288 288 ALA ALA A . n A 1 233 ASN 233 289 289 ASN ASN A . n A 1 234 GLY 234 290 290 GLY GLY A . n A 1 235 ILE 235 291 291 ILE ILE A . n A 1 236 TYR 236 292 292 TYR TYR A . n A 1 237 ILE 237 293 293 ILE ILE A . n A 1 238 VAL 238 294 294 VAL VAL A . n A 1 239 GLY 239 295 295 GLY GLY A . n A 1 240 SER 240 296 296 SER SER A . n A 1 241 ARG 241 297 297 ARG ARG A . n A 1 242 TYR 242 298 298 TYR TYR A . n A 1 243 LYS 243 299 299 LYS LYS A . n A 1 244 HIS 244 300 300 HIS HIS A . n A 1 245 ILE 245 301 301 ILE ILE A . n A 1 246 ILE 246 302 302 ILE ILE A . n A 1 247 MET 247 303 303 MET MET A . n A 1 248 ASP 248 304 304 ASP ASP A . n A 1 249 SER 249 305 305 SER SER A . n A 1 250 SER 250 306 306 SER SER A . n A 1 251 THR 251 307 307 THR THR A . n A 1 252 TYR 252 308 308 TYR TYR A . n A 1 253 GLY 253 309 309 GLY GLY A . n A 1 254 VAL 254 310 310 VAL VAL A . n A 1 255 PRO 255 311 311 PRO PRO A . n A 1 256 VAL 256 312 312 VAL VAL A . n A 1 257 ASN 257 313 313 ASN ASN A . n A 1 258 SER 258 314 314 SER SER A . n A 1 259 PRO 259 315 315 PRO PRO A . n A 1 260 ASN 260 316 316 ASN ASN A . n A 1 261 GLY 261 317 317 GLY GLY A . n A 1 262 TYR 262 318 318 TYR TYR A . n A 1 263 ARG 263 319 319 ARG ARG A . n A 1 264 THR 264 320 320 THR THR A . n A 1 265 ASP 265 321 321 ASP ASP A . n A 1 266 VAL 266 322 322 VAL VAL A . n A 1 267 ASP 267 323 323 ASP ASP A . n A 1 268 TRP 268 324 324 TRP TRP A . n A 1 269 ALA 269 325 325 ALA ALA A . n A 1 270 THR 270 326 326 THR THR A . n A 1 271 GLN 271 327 327 GLN GLN A . n A 1 272 ILE 272 328 328 ILE ILE A . n A 1 273 SER 273 329 329 SER SER A . n A 1 274 TYR 274 330 330 TYR TYR A . n A 1 275 SER 275 331 331 SER SER A . n A 1 276 GLY 276 332 332 GLY GLY A . n A 1 277 VAL 277 333 333 VAL VAL A . n A 1 278 PHE 278 334 334 PHE PHE A . n A 1 279 VAL 279 335 335 VAL VAL A . n A 1 280 HIS 280 336 336 HIS HIS A . n A 1 281 SER 281 337 337 SER SER A . n A 1 282 ALA 282 338 338 ALA ALA A . n A 1 283 PRO 283 339 339 PRO PRO A . n A 1 284 TRP 284 340 340 TRP TRP A . n A 1 285 SER 285 341 341 SER SER A . n A 1 286 VAL 286 342 342 VAL VAL A . n A 1 287 GLY 287 343 343 GLY GLY A . n A 1 288 ALA 288 344 344 ALA ALA A . n A 1 289 GLN 289 345 345 GLN GLN A . n A 1 290 GLY 290 346 346 GLY GLY A . n A 1 291 HIS 291 347 347 HIS HIS A . n A 1 292 THR 292 348 348 THR THR A . n A 1 293 ASN 293 349 349 ASN ASN A . n A 1 294 THR 294 350 350 THR THR A . n A 1 295 SER 295 351 351 SER SER A . n A 1 296 HIS 296 352 352 HIS HIS A . n A 1 297 GLY 297 353 353 GLY GLY A . n A 1 298 CYS 298 354 354 CYS CYS A . n A 1 299 LEU 299 355 355 LEU LEU A . n A 1 300 ASN 300 356 356 ASN ASN A . n A 1 301 VAL 301 357 357 VAL VAL A . n A 1 302 SER 302 358 358 SER SER A . n A 1 303 PRO 303 359 359 PRO PRO A . n A 1 304 SER 304 360 360 SER SER A . n A 1 305 ASN 305 361 361 ASN ASN A . n A 1 306 ALA 306 362 362 ALA ALA A . n A 1 307 GLN 307 363 363 GLN GLN A . n A 1 308 TRP 308 364 364 TRP TRP A . n A 1 309 PHE 309 365 365 PHE PHE A . n A 1 310 TYR 310 366 366 TYR TYR A . n A 1 311 ASP 311 367 367 ASP ASP A . n A 1 312 HIS 312 368 368 HIS HIS A . n A 1 313 VAL 313 369 369 VAL VAL A . n A 1 314 LYS 314 370 370 LYS LYS A . n A 1 315 ARG 315 371 371 ARG ARG A . n A 1 316 GLY 316 372 372 GLY GLY A . n A 1 317 ASP 317 373 373 ASP ASP A . n A 1 318 ILE 318 374 374 ILE ILE A . n A 1 319 VAL 319 375 375 VAL VAL A . n A 1 320 GLU 320 376 376 GLU GLU A . n A 1 321 VAL 321 377 377 VAL VAL A . n A 1 322 VAL 322 378 378 VAL VAL A . n A 1 323 ASN 323 379 379 ASN ASN A . n A 1 324 THR 324 380 380 THR THR A . n A 1 325 VAL 325 381 381 VAL VAL A . n A 1 326 GLY 326 382 382 GLY GLY A . n A 1 327 GLY 327 383 383 GLY GLY A . n A 1 328 THR 328 384 384 THR THR A . n A 1 329 LEU 329 385 385 LEU LEU A . n A 1 330 PRO 330 386 386 PRO PRO A . n A 1 331 GLY 331 387 387 GLY GLY A . n A 1 332 ILE 332 388 388 ILE ILE A . n A 1 333 ASP 333 389 389 ASP ASP A . n A 1 334 GLY 334 390 390 GLY GLY A . n A 1 335 LEU 335 391 391 LEU LEU A . n A 1 336 GLY 336 392 392 GLY GLY A . n A 1 337 ASP 337 393 393 ASP ASP A . n A 1 338 TRP 338 394 394 TRP TRP A . n A 1 339 ASN 339 395 395 ASN ASN A . n A 1 340 ILE 340 396 396 ILE ILE A . n A 1 341 PRO 341 397 397 PRO PRO A . n A 1 342 TRP 342 398 398 TRP TRP A . n A 1 343 ASP 343 399 399 ASP ASP A . n A 1 344 GLN 344 400 400 GLN GLN A . n A 1 345 TRP 345 401 401 TRP TRP A . n A 1 346 ARG 346 402 402 ARG ARG A . n A 1 347 ALA 347 403 403 ALA ALA A . n A 1 348 GLY 348 404 404 GLY GLY A . n A 1 349 ASN 349 405 405 ASN ASN A . n A 1 350 ALA 350 406 406 ALA ALA A . n A 1 351 LYS 351 407 407 LYS LYS A . n A 1 352 ALA 352 408 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'Enzyme Function Initiative' _pdbx_SG_project.full_name_of_center ? _pdbx_SG_project.initial_of_center ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLD 1 501 501 MLD MLD A . C 3 DWZ 1 502 502 DWZ DWZ A . D 4 HOH 1 601 1 HOH HOH A . D 4 HOH 2 602 2 HOH HOH A . D 4 HOH 3 603 3 HOH HOH A . D 4 HOH 4 604 4 HOH HOH A . D 4 HOH 5 605 5 HOH HOH A . D 4 HOH 6 606 6 HOH HOH A . D 4 HOH 7 607 7 HOH HOH A . D 4 HOH 8 608 8 HOH HOH A . D 4 HOH 9 609 9 HOH HOH A . D 4 HOH 10 610 10 HOH HOH A . D 4 HOH 11 611 11 HOH HOH A . D 4 HOH 12 612 12 HOH HOH A . D 4 HOH 13 613 13 HOH HOH A . D 4 HOH 14 614 14 HOH HOH A . D 4 HOH 15 615 15 HOH HOH A . D 4 HOH 16 616 16 HOH HOH A . D 4 HOH 17 617 17 HOH HOH A . D 4 HOH 18 618 18 HOH HOH A . D 4 HOH 19 619 19 HOH HOH A . D 4 HOH 20 620 20 HOH HOH A . D 4 HOH 21 621 21 HOH HOH A . D 4 HOH 22 622 22 HOH HOH A . D 4 HOH 23 623 23 HOH HOH A . D 4 HOH 24 624 24 HOH HOH A . D 4 HOH 25 625 25 HOH HOH A . D 4 HOH 26 626 26 HOH HOH A . D 4 HOH 27 627 27 HOH HOH A . D 4 HOH 28 628 28 HOH HOH A . D 4 HOH 29 629 29 HOH HOH A . D 4 HOH 30 630 30 HOH HOH A . D 4 HOH 31 631 31 HOH HOH A . D 4 HOH 32 632 32 HOH HOH A . D 4 HOH 33 633 33 HOH HOH A . D 4 HOH 34 634 34 HOH HOH A . D 4 HOH 35 635 35 HOH HOH A . D 4 HOH 36 636 36 HOH HOH A . D 4 HOH 37 637 37 HOH HOH A . D 4 HOH 38 638 38 HOH HOH A . D 4 HOH 39 639 39 HOH HOH A . D 4 HOH 40 640 40 HOH HOH A . D 4 HOH 41 641 41 HOH HOH A . D 4 HOH 42 642 42 HOH HOH A . D 4 HOH 43 643 43 HOH HOH A . D 4 HOH 44 644 44 HOH HOH A . D 4 HOH 45 645 45 HOH HOH A . D 4 HOH 46 646 46 HOH HOH A . D 4 HOH 47 647 47 HOH HOH A . D 4 HOH 48 648 48 HOH HOH A . D 4 HOH 49 649 49 HOH HOH A . D 4 HOH 50 650 50 HOH HOH A . D 4 HOH 51 651 51 HOH HOH A . D 4 HOH 52 652 52 HOH HOH A . D 4 HOH 53 653 53 HOH HOH A . D 4 HOH 54 654 54 HOH HOH A . D 4 HOH 55 655 55 HOH HOH A . D 4 HOH 56 656 56 HOH HOH A . D 4 HOH 57 657 57 HOH HOH A . D 4 HOH 58 658 58 HOH HOH A . D 4 HOH 59 659 59 HOH HOH A . D 4 HOH 60 660 60 HOH HOH A . D 4 HOH 61 661 61 HOH HOH A . D 4 HOH 62 662 62 HOH HOH A . D 4 HOH 63 663 63 HOH HOH A . D 4 HOH 64 664 64 HOH HOH A . D 4 HOH 65 665 65 HOH HOH A . D 4 HOH 66 666 66 HOH HOH A . D 4 HOH 67 667 67 HOH HOH A . D 4 HOH 68 668 68 HOH HOH A . D 4 HOH 69 669 69 HOH HOH A . D 4 HOH 70 670 70 HOH HOH A . D 4 HOH 71 671 71 HOH HOH A . D 4 HOH 72 672 72 HOH HOH A . D 4 HOH 73 673 73 HOH HOH A . D 4 HOH 74 674 74 HOH HOH A . D 4 HOH 75 675 75 HOH HOH A . D 4 HOH 76 676 76 HOH HOH A . D 4 HOH 77 677 77 HOH HOH A . D 4 HOH 78 678 78 HOH HOH A . D 4 HOH 79 679 79 HOH HOH A . D 4 HOH 80 680 80 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3200 ? 2 MORE -17 ? 2 'SSA (A^2)' 32570 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -66.4590000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 614 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-29 2 'Structure model' 1 1 2016-08-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2022-02-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 4 'Structure model' database_2 4 4 'Structure model' entity 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.pdbx_synonyms' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 Auto-Rickshaw phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 204 ? ? -169.57 -166.03 2 1 TYR A 308 ? ? 105.41 11.52 3 1 TYR A 318 ? ? -164.60 118.46 4 1 HIS A 347 ? ? -140.01 -51.98 5 1 ASN A 405 ? ? -153.67 43.32 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A MLD 501 ? CAA ? B MLD 1 CAA 2 1 N 1 A MLD 501 ? CAB ? B MLD 1 CAB 3 1 N 1 A MLD 501 ? OAC ? B MLD 1 OAC 4 1 N 1 A MLD 501 ? C3 ? B MLD 1 C3 5 1 N 1 A MLD 501 ? O3 ? B MLD 1 O3 6 1 N 1 A MLD 501 ? C4 ? B MLD 1 C4 7 1 N 1 A MLD 501 ? O4 ? B MLD 1 O4 8 1 N 1 A MLD 501 ? C5 ? B MLD 1 C5 9 1 N 1 A MLD 501 ? C6 ? B MLD 1 C6 10 1 N 1 A MLD 501 ? O6 ? B MLD 1 O6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 57 ? A LEU 1 2 1 Y 1 A LEU 58 ? A LEU 2 3 1 Y 1 A ALA 408 ? A ALA 352 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA' MLD 3 ;(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid ; DWZ 4 water HOH #