data_4QVU # _entry.id 4QVU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QVU pdb_00004qvu 10.2210/pdb4qvu/pdb RCSB RCSB086577 ? ? WWPDB D_1000086577 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-394177 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4QVU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-07-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BCE0241) from Bacillus cereus ATCC 10987 at 2.65 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4QVU _cell.length_a 102.049 _cell.length_b 102.049 _cell.length_c 95.481 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QVU _symmetry.Int_Tables_number 181 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 31063.846 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DTQQLYFLNDIGKQKPESIRNRSAACPFCDRENLTDILATEGSIIWLKNKFPTLKDTFQTVLIETDNCEDHIAT YTEEH(MSE)RSLIRFSIKHWLNLQKNEEFTSVILYKNHGPFSGGSLHHAH(MSE)QIIG(MSE)KYVNYLDNVEQDNFQ GVIVQKNEHIELNISDRPIIGFTEFNIIIEDIGCIDELANYIQQTVRYILTDFHKGCSSYNLFFYYLNEKIICKVVPRFV VSPLYVGYKIPQVSTKIEDVKIQLAAYFTKQNDAIIHKKIE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDTQQLYFLNDIGKQKPESIRNRSAACPFCDRENLTDILATEGSIIWLKNKFPTLKDTFQTVLIETDNCEDHIATYTEE HMRSLIRFSIKHWLNLQKNEEFTSVILYKNHGPFSGGSLHHAHMQIIGMKYVNYLDNVEQDNFQGVIVQKNEHIELNISD RPIIGFTEFNIIIEDIGCIDELANYIQQTVRYILTDFHKGCSSYNLFFYYLNEKIICKVVPRFVVSPLYVGYKIPQVSTK IEDVKIQLAAYFTKQNDAIIHKKIE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-394177 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 THR n 1 5 GLN n 1 6 GLN n 1 7 LEU n 1 8 TYR n 1 9 PHE n 1 10 LEU n 1 11 ASN n 1 12 ASP n 1 13 ILE n 1 14 GLY n 1 15 LYS n 1 16 GLN n 1 17 LYS n 1 18 PRO n 1 19 GLU n 1 20 SER n 1 21 ILE n 1 22 ARG n 1 23 ASN n 1 24 ARG n 1 25 SER n 1 26 ALA n 1 27 ALA n 1 28 CYS n 1 29 PRO n 1 30 PHE n 1 31 CYS n 1 32 ASP n 1 33 ARG n 1 34 GLU n 1 35 ASN n 1 36 LEU n 1 37 THR n 1 38 ASP n 1 39 ILE n 1 40 LEU n 1 41 ALA n 1 42 THR n 1 43 GLU n 1 44 GLY n 1 45 SER n 1 46 ILE n 1 47 ILE n 1 48 TRP n 1 49 LEU n 1 50 LYS n 1 51 ASN n 1 52 LYS n 1 53 PHE n 1 54 PRO n 1 55 THR n 1 56 LEU n 1 57 LYS n 1 58 ASP n 1 59 THR n 1 60 PHE n 1 61 GLN n 1 62 THR n 1 63 VAL n 1 64 LEU n 1 65 ILE n 1 66 GLU n 1 67 THR n 1 68 ASP n 1 69 ASN n 1 70 CYS n 1 71 GLU n 1 72 ASP n 1 73 HIS n 1 74 ILE n 1 75 ALA n 1 76 THR n 1 77 TYR n 1 78 THR n 1 79 GLU n 1 80 GLU n 1 81 HIS n 1 82 MSE n 1 83 ARG n 1 84 SER n 1 85 LEU n 1 86 ILE n 1 87 ARG n 1 88 PHE n 1 89 SER n 1 90 ILE n 1 91 LYS n 1 92 HIS n 1 93 TRP n 1 94 LEU n 1 95 ASN n 1 96 LEU n 1 97 GLN n 1 98 LYS n 1 99 ASN n 1 100 GLU n 1 101 GLU n 1 102 PHE n 1 103 THR n 1 104 SER n 1 105 VAL n 1 106 ILE n 1 107 LEU n 1 108 TYR n 1 109 LYS n 1 110 ASN n 1 111 HIS n 1 112 GLY n 1 113 PRO n 1 114 PHE n 1 115 SER n 1 116 GLY n 1 117 GLY n 1 118 SER n 1 119 LEU n 1 120 HIS n 1 121 HIS n 1 122 ALA n 1 123 HIS n 1 124 MSE n 1 125 GLN n 1 126 ILE n 1 127 ILE n 1 128 GLY n 1 129 MSE n 1 130 LYS n 1 131 TYR n 1 132 VAL n 1 133 ASN n 1 134 TYR n 1 135 LEU n 1 136 ASP n 1 137 ASN n 1 138 VAL n 1 139 GLU n 1 140 GLN n 1 141 ASP n 1 142 ASN n 1 143 PHE n 1 144 GLN n 1 145 GLY n 1 146 VAL n 1 147 ILE n 1 148 VAL n 1 149 GLN n 1 150 LYS n 1 151 ASN n 1 152 GLU n 1 153 HIS n 1 154 ILE n 1 155 GLU n 1 156 LEU n 1 157 ASN n 1 158 ILE n 1 159 SER n 1 160 ASP n 1 161 ARG n 1 162 PRO n 1 163 ILE n 1 164 ILE n 1 165 GLY n 1 166 PHE n 1 167 THR n 1 168 GLU n 1 169 PHE n 1 170 ASN n 1 171 ILE n 1 172 ILE n 1 173 ILE n 1 174 GLU n 1 175 ASP n 1 176 ILE n 1 177 GLY n 1 178 CYS n 1 179 ILE n 1 180 ASP n 1 181 GLU n 1 182 LEU n 1 183 ALA n 1 184 ASN n 1 185 TYR n 1 186 ILE n 1 187 GLN n 1 188 GLN n 1 189 THR n 1 190 VAL n 1 191 ARG n 1 192 TYR n 1 193 ILE n 1 194 LEU n 1 195 THR n 1 196 ASP n 1 197 PHE n 1 198 HIS n 1 199 LYS n 1 200 GLY n 1 201 CYS n 1 202 SER n 1 203 SER n 1 204 TYR n 1 205 ASN n 1 206 LEU n 1 207 PHE n 1 208 PHE n 1 209 TYR n 1 210 TYR n 1 211 LEU n 1 212 ASN n 1 213 GLU n 1 214 LYS n 1 215 ILE n 1 216 ILE n 1 217 CYS n 1 218 LYS n 1 219 VAL n 1 220 VAL n 1 221 PRO n 1 222 ARG n 1 223 PHE n 1 224 VAL n 1 225 VAL n 1 226 SER n 1 227 PRO n 1 228 LEU n 1 229 TYR n 1 230 VAL n 1 231 GLY n 1 232 TYR n 1 233 LYS n 1 234 ILE n 1 235 PRO n 1 236 GLN n 1 237 VAL n 1 238 SER n 1 239 THR n 1 240 LYS n 1 241 ILE n 1 242 GLU n 1 243 ASP n 1 244 VAL n 1 245 LYS n 1 246 ILE n 1 247 GLN n 1 248 LEU n 1 249 ALA n 1 250 ALA n 1 251 TYR n 1 252 PHE n 1 253 THR n 1 254 LYS n 1 255 GLN n 1 256 ASN n 1 257 ASP n 1 258 ALA n 1 259 ILE n 1 260 ILE n 1 261 HIS n 1 262 LYS n 1 263 LYS n 1 264 ILE n 1 265 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BCE_0241 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 10987' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q73EW7_BACC1 _struct_ref.pdbx_db_accession Q73EW7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDTQQLYFLNDIGKQKPESIRNRSAACPFCDRENLTDILATEGSIIWLKNKFPTLKDTFQTVLIETDNCEDHIATYTEEH MRSLIRFSIKHWLNLQKNEEFTSVILYKNHGPFSGGSLHHAHMQIIGMKYVNYLDNVEQDNFQGVIVQKNEHIELNISDR PIIGFTEFNIIIEDIGCIDELANYIQQTVRYILTDFHKGCSSYNLFFYYLNEKIICKVVPRFVVSPLYVGYKIPQVSTKI EDVKIQLAAYFTKQNDAIIHKKIE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QVU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q73EW7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 264 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4QVU _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q73EW7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4QVU # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.47 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '53.00% polyethylene glycol 200, 0.1M HEPES pH 7.47, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2014-03-27 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9116 1.0 2 0.9794 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength_list 0.9116,0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4QVU _reflns.d_resolution_high 2.65 _reflns.d_resolution_low 29.944 _reflns.number_all 8992 _reflns.number_obs 8992 _reflns.pdbx_netI_over_sigmaI 16.200 _reflns.pdbx_Rsym_value 0.086 _reflns.pdbx_redundancy 11.600 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 86.177 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.650 2.720 ? 8051 ? ? 2.300 1.267 ? 12.400 ? 648 100.000 1 1 2.720 2.790 ? 7711 ? 0.013 0.9 0.886 ? 12.400 ? 621 100.000 2 1 2.790 2.870 ? 7503 ? 0.013 1.1 0.679 ? 12.400 ? 607 100.000 3 1 2.870 2.960 ? 7295 ? 0.013 1.5 0.500 ? 12.000 ? 606 100.000 4 1 2.960 3.060 ? 6717 ? 0.013 1.9 0.399 ? 11.600 ? 577 100.000 5 1 3.060 3.170 ? 6288 ? 0.013 2.5 0.307 ? 11.100 ? 564 99.900 6 1 3.170 3.290 ? 5665 ? 0.013 3.7 0.200 ? 10.500 ? 542 100.000 7 1 3.290 3.420 ? 6511 ? 0.013 4.6 0.163 ? 12.300 ? 531 100.000 8 1 3.420 3.570 ? 6051 ? 0.013 5.3 0.131 ? 12.200 ? 494 100.000 9 1 3.570 3.750 ? 5808 ? 0.013 6.6 0.101 ? 11.800 ? 491 100.000 10 1 3.750 3.950 ? 5422 ? 0.013 7.6 0.089 ? 11.700 ? 465 100.000 11 1 3.950 4.190 ? 4695 ? 0.013 9.0 0.070 ? 10.700 ? 440 100.000 12 1 4.190 4.480 ? 4679 ? 0.013 10.1 0.062 ? 11.300 ? 414 100.000 13 1 4.480 4.840 ? 4826 ? 0.013 10.0 0.060 ? 12.200 ? 395 100.000 14 1 4.840 5.300 ? 4270 ? 0.013 9.9 0.063 ? 11.800 ? 361 100.000 15 1 5.300 5.930 ? 3730 ? 0.013 9.8 0.064 ? 11.000 ? 339 100.000 16 1 5.930 6.840 ? 2949 ? 0.013 9.8 0.062 ? 9.900 ? 298 100.000 17 1 6.840 8.380 ? 3004 ? 0.013 9.6 0.063 ? 11.600 ? 260 99.900 18 1 8.380 11.850 ? 2100 ? 0.013 11.2 0.051 ? 9.900 ? 213 99.900 19 1 11.850 29.944 ? 1161 ? 0.013 9.1 0.054 ? 9.200 ? 126 93.800 20 1 # _refine.entry_id 4QVU _refine.ls_d_res_high 2.6500 _refine.ls_d_res_low 29.944 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9600 _refine.ls_number_reflns_obs 8971 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. POLYETHYLENE GLYCOL 200 FRAGMENT (PG4) FROM THE CRYSTALLIZATION WERE MODELED INTO THE STRUCTURE. 5. THE MODELING OF ZINC (ZN) INTO THE STRUCTURE IS SUPPORTED BY ANOMALOUS DIFFERENCE DENSITY. 6. SODIUM (NA) FROM PURIFICATION BUFFER WAS MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2100 _refine.ls_R_factor_R_work 0.2068 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2607 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 6.2000 _refine.ls_number_reflns_R_free 556 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 83.7481 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.0758 _refine.aniso_B[2][2] -1.0758 _refine.aniso_B[3][3] 2.1516 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9372 _refine.correlation_coeff_Fo_to_Fc_free 0.9132 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 166.270 _refine.B_iso_min 46.960 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.750 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4QVU _refine_analyze.Luzzati_coordinate_error_obs 0.409 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1715 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 1728 _refine_hist.d_res_high 2.6500 _refine_hist.d_res_low 29.944 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 792 ? ? 6.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 44 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 253 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1762 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 2 ? ? 6.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 247 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1981 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1762 0.009 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2398 1.100 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.270 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.180 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.6500 _refine_ls_shell.d_res_low 2.9600 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.9600 _refine_ls_shell.number_reflns_R_work 2310 _refine_ls_shell.R_factor_all 0.2054 _refine_ls_shell.R_factor_R_work 0.2033 _refine_ls_shell.R_factor_R_free 0.2347 _refine_ls_shell.percent_reflns_R_free 6.4800 _refine_ls_shell.number_reflns_R_free 160 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2470 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4931 family protein (BCE0241) from Bacillus cereus ATCC 10987 at 2.65 A resolution' _struct.entry_id 4QVU _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;HIT-like fold, PF16285 family, DUF4931, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4QVU # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 78 ? LYS A 98 ? THR A 77 LYS A 97 1 ? 21 HELX_P HELX_P2 2 GLU A 139 ? PHE A 143 ? GLU A 138 PHE A 142 5 ? 5 HELX_P HELX_P3 3 ASP A 175 ? GLY A 177 ? ASP A 174 GLY A 176 5 ? 3 HELX_P HELX_P4 4 CYS A 178 ? ASP A 196 ? CYS A 177 ASP A 195 1 ? 19 HELX_P HELX_P5 5 PHE A 197 ? GLY A 200 ? PHE A 196 GLY A 199 5 ? 4 HELX_P HELX_P6 6 SER A 226 ? LYS A 233 ? SER A 225 LYS A 232 1 ? 8 HELX_P HELX_P7 7 LYS A 240 ? ALA A 250 ? LYS A 239 ALA A 249 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 81 C ? ? ? 1_555 A MSE 82 N ? ? A HIS 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale2 covale both ? A MSE 82 C ? ? ? 1_555 A ARG 83 N ? ? A MSE 81 A ARG 82 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale3 covale both ? A HIS 123 C ? ? ? 1_555 A MSE 124 N ? ? A HIS 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale4 covale both ? A MSE 124 C ? ? ? 1_555 A GLN 125 N ? ? A MSE 123 A GLN 124 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A GLY 128 C ? ? ? 1_555 A MSE 129 N ? ? A GLY 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale both ? A MSE 129 C ? ? ? 1_555 A LYS 130 N ? ? A MSE 128 A LYS 129 1_555 ? ? ? ? ? ? ? 1.346 ? ? metalc1 metalc ? ? A LEU 135 O ? ? ? 1_555 D NA . NA ? ? A LEU 134 A NA 302 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc2 metalc ? ? A VAL 138 O ? ? ? 1_555 D NA . NA ? ? A VAL 137 A NA 302 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc3 metalc ? ? A HIS 153 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 152 A ZN 300 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc4 metalc ? ? A CYS 178 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 177 A ZN 300 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc5 metalc ? ? A GLU 181 OE2 ? ? ? 1_555 B ZN . ZN ? ? A GLU 180 A ZN 300 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 302 A HOH 404 1_555 ? ? ? ? ? ? ? 2.570 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 39 ? GLU A 43 ? ILE A 38 GLU A 42 A 2 ILE A 46 ? LYS A 50 ? ILE A 45 LYS A 49 A 3 THR A 59 ? ILE A 65 ? THR A 58 ILE A 64 A 4 HIS A 123 ? MSE A 129 ? HIS A 122 MSE A 128 A 5 SER A 104 ? HIS A 111 ? SER A 103 HIS A 110 A 6 SER A 203 ? LEU A 211 ? SER A 202 LEU A 210 A 7 LYS A 214 ? ARG A 222 ? LYS A 213 ARG A 221 A 8 PHE A 169 ? ILE A 173 ? PHE A 168 ILE A 172 A 9 ILE A 154 ? SER A 159 ? ILE A 153 SER A 158 A 10 GLY A 145 ? LYS A 150 ? GLY A 144 LYS A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 40 ? N LEU A 39 O TRP A 48 ? O TRP A 47 A 2 3 N LEU A 49 ? N LEU A 48 O VAL A 63 ? O VAL A 62 A 3 4 N LEU A 64 ? N LEU A 63 O MSE A 124 ? O MSE A 123 A 4 5 O GLN A 125 ? O GLN A 124 N TYR A 108 ? N TYR A 107 A 5 6 N LEU A 107 ? N LEU A 106 O PHE A 208 ? O PHE A 207 A 6 7 N PHE A 207 ? N PHE A 206 O LYS A 218 ? O LYS A 217 A 7 8 O VAL A 219 ? O VAL A 218 N PHE A 169 ? N PHE A 168 A 8 9 O ILE A 172 ? O ILE A 171 N GLU A 155 ? N GLU A 154 A 9 10 O LEU A 156 ? O LEU A 155 N GLN A 149 ? N GLN A 148 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 300 ? 3 'BINDING SITE FOR RESIDUE ZN A 300' AC2 Software A PG4 301 ? 5 'BINDING SITE FOR RESIDUE PG4 A 301' AC3 Software A NA 302 ? 5 'BINDING SITE FOR RESIDUE NA A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 153 ? HIS A 152 . ? 1_555 ? 2 AC1 3 CYS A 178 ? CYS A 177 . ? 1_555 ? 3 AC1 3 GLU A 181 ? GLU A 180 . ? 1_555 ? 4 AC2 5 PHE A 143 ? PHE A 142 . ? 1_555 ? 5 AC2 5 GLN A 144 ? GLN A 143 . ? 1_555 ? 6 AC2 5 GLU A 155 ? GLU A 154 . ? 1_555 ? 7 AC2 5 ASN A 212 ? ASN A 211 . ? 1_555 ? 8 AC2 5 LYS A 214 ? LYS A 213 . ? 1_555 ? 9 AC3 5 LEU A 135 ? LEU A 134 . ? 1_555 ? 10 AC3 5 ASP A 136 ? ASP A 135 . ? 4_655 ? 11 AC3 5 ASP A 136 ? ASP A 135 . ? 1_555 ? 12 AC3 5 VAL A 138 ? VAL A 137 . ? 1_555 ? 13 AC3 5 HOH E . ? HOH A 404 . ? 1_555 ? # _atom_sites.entry_id 4QVU _atom_sites.fract_transf_matrix[1][1] 0.009799 _atom_sites.fract_transf_matrix[1][2] 0.005658 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011315 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010473 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASP 3 2 ? ? ? A . n A 1 4 THR 4 3 ? ? ? A . n A 1 5 GLN 5 4 ? ? ? A . n A 1 6 GLN 6 5 ? ? ? A . n A 1 7 LEU 7 6 ? ? ? A . n A 1 8 TYR 8 7 ? ? ? A . n A 1 9 PHE 9 8 ? ? ? A . n A 1 10 LEU 10 9 ? ? ? A . n A 1 11 ASN 11 10 ? ? ? A . n A 1 12 ASP 12 11 ? ? ? A . n A 1 13 ILE 13 12 ? ? ? A . n A 1 14 GLY 14 13 ? ? ? A . n A 1 15 LYS 15 14 ? ? ? A . n A 1 16 GLN 16 15 ? ? ? A . n A 1 17 LYS 17 16 ? ? ? A . n A 1 18 PRO 18 17 ? ? ? A . n A 1 19 GLU 19 18 ? ? ? A . n A 1 20 SER 20 19 ? ? ? A . n A 1 21 ILE 21 20 ? ? ? A . n A 1 22 ARG 22 21 ? ? ? A . n A 1 23 ASN 23 22 ? ? ? A . n A 1 24 ARG 24 23 ? ? ? A . n A 1 25 SER 25 24 ? ? ? A . n A 1 26 ALA 26 25 ? ? ? A . n A 1 27 ALA 27 26 ? ? ? A . n A 1 28 CYS 28 27 ? ? ? A . n A 1 29 PRO 29 28 ? ? ? A . n A 1 30 PHE 30 29 ? ? ? A . n A 1 31 CYS 31 30 ? ? ? A . n A 1 32 ASP 32 31 ? ? ? A . n A 1 33 ARG 33 32 ? ? ? A . n A 1 34 GLU 34 33 ? ? ? A . n A 1 35 ASN 35 34 ? ? ? A . n A 1 36 LEU 36 35 ? ? ? A . n A 1 37 THR 37 36 ? ? ? A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 ILE 46 45 45 ILE ILE A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 TRP 48 47 47 TRP TRP A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 LYS 50 49 49 LYS LYS A . n A 1 51 ASN 51 50 50 ASN ASN A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 PHE 53 52 52 PHE PHE A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 PHE 60 59 59 PHE PHE A . n A 1 61 GLN 61 60 60 GLN GLN A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 CYS 70 69 69 CYS CYS A . n A 1 71 GLU 71 70 70 GLU GLU A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 TYR 77 76 76 TYR TYR A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 MSE 82 81 81 MSE MSE A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 LYS 91 90 90 LYS LYS A . n A 1 92 HIS 92 91 91 HIS HIS A . n A 1 93 TRP 93 92 92 TRP TRP A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 ASN 95 94 94 ASN ASN A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 GLN 97 96 96 GLN GLN A . n A 1 98 LYS 98 97 97 LYS LYS A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 PHE 102 101 101 PHE PHE A . n A 1 103 THR 103 102 102 THR THR A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 TYR 108 107 107 TYR TYR A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 HIS 111 110 110 HIS HIS A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 HIS 120 119 119 HIS HIS A . n A 1 121 HIS 121 120 120 HIS HIS A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 HIS 123 122 122 HIS HIS A . n A 1 124 MSE 124 123 123 MSE MSE A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 ILE 127 126 126 ILE ILE A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 MSE 129 128 128 MSE MSE A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 ASN 133 132 132 ASN ASN A . n A 1 134 TYR 134 133 133 TYR TYR A . n A 1 135 LEU 135 134 134 LEU LEU A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 ASN 137 136 136 ASN ASN A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 GLN 140 139 139 GLN GLN A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 ASN 142 141 141 ASN ASN A . n A 1 143 PHE 143 142 142 PHE PHE A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 VAL 146 145 145 VAL VAL A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 VAL 148 147 147 VAL VAL A . n A 1 149 GLN 149 148 148 GLN GLN A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 ASN 151 150 150 ASN ASN A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 HIS 153 152 152 HIS HIS A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 GLU 155 154 154 GLU GLU A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 ASN 157 156 156 ASN ASN A . n A 1 158 ILE 158 157 157 ILE ILE A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 ASP 160 159 159 ASP ASP A . n A 1 161 ARG 161 160 160 ARG ARG A . n A 1 162 PRO 162 161 161 PRO PRO A . n A 1 163 ILE 163 162 162 ILE ILE A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 PHE 166 165 165 PHE PHE A . n A 1 167 THR 167 166 166 THR THR A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 PHE 169 168 168 PHE PHE A . n A 1 170 ASN 170 169 169 ASN ASN A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 ILE 172 171 171 ILE ILE A . n A 1 173 ILE 173 172 172 ILE ILE A . n A 1 174 GLU 174 173 173 GLU GLU A . n A 1 175 ASP 175 174 174 ASP ASP A . n A 1 176 ILE 176 175 175 ILE ILE A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 CYS 178 177 177 CYS CYS A . n A 1 179 ILE 179 178 178 ILE ILE A . n A 1 180 ASP 180 179 179 ASP ASP A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 ALA 183 182 182 ALA ALA A . n A 1 184 ASN 184 183 183 ASN ASN A . n A 1 185 TYR 185 184 184 TYR TYR A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 GLN 187 186 186 GLN GLN A . n A 1 188 GLN 188 187 187 GLN GLN A . n A 1 189 THR 189 188 188 THR THR A . n A 1 190 VAL 190 189 189 VAL VAL A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 TYR 192 191 191 TYR TYR A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 THR 195 194 194 THR THR A . n A 1 196 ASP 196 195 195 ASP ASP A . n A 1 197 PHE 197 196 196 PHE PHE A . n A 1 198 HIS 198 197 197 HIS HIS A . n A 1 199 LYS 199 198 198 LYS LYS A . n A 1 200 GLY 200 199 199 GLY GLY A . n A 1 201 CYS 201 200 200 CYS CYS A . n A 1 202 SER 202 201 201 SER SER A . n A 1 203 SER 203 202 202 SER SER A . n A 1 204 TYR 204 203 203 TYR TYR A . n A 1 205 ASN 205 204 204 ASN ASN A . n A 1 206 LEU 206 205 205 LEU LEU A . n A 1 207 PHE 207 206 206 PHE PHE A . n A 1 208 PHE 208 207 207 PHE PHE A . n A 1 209 TYR 209 208 208 TYR TYR A . n A 1 210 TYR 210 209 209 TYR TYR A . n A 1 211 LEU 211 210 210 LEU LEU A . n A 1 212 ASN 212 211 211 ASN ASN A . n A 1 213 GLU 213 212 212 GLU GLU A . n A 1 214 LYS 214 213 213 LYS LYS A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 ILE 216 215 215 ILE ILE A . n A 1 217 CYS 217 216 216 CYS CYS A . n A 1 218 LYS 218 217 217 LYS LYS A . n A 1 219 VAL 219 218 218 VAL VAL A . n A 1 220 VAL 220 219 219 VAL VAL A . n A 1 221 PRO 221 220 220 PRO PRO A . n A 1 222 ARG 222 221 221 ARG ARG A . n A 1 223 PHE 223 222 222 PHE PHE A . n A 1 224 VAL 224 223 223 VAL VAL A . n A 1 225 VAL 225 224 224 VAL VAL A . n A 1 226 SER 226 225 225 SER SER A . n A 1 227 PRO 227 226 226 PRO PRO A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 TYR 229 228 228 TYR TYR A . n A 1 230 VAL 230 229 229 VAL VAL A . n A 1 231 GLY 231 230 230 GLY GLY A . n A 1 232 TYR 232 231 231 TYR TYR A . n A 1 233 LYS 233 232 232 LYS LYS A . n A 1 234 ILE 234 233 233 ILE ILE A . n A 1 235 PRO 235 234 234 PRO PRO A . n A 1 236 GLN 236 235 235 GLN GLN A . n A 1 237 VAL 237 236 236 VAL VAL A . n A 1 238 SER 238 237 237 SER SER A . n A 1 239 THR 239 238 238 THR THR A . n A 1 240 LYS 240 239 239 LYS LYS A . n A 1 241 ILE 241 240 240 ILE ILE A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 ASP 243 242 242 ASP ASP A . n A 1 244 VAL 244 243 243 VAL VAL A . n A 1 245 LYS 245 244 244 LYS LYS A . n A 1 246 ILE 246 245 245 ILE ILE A . n A 1 247 GLN 247 246 246 GLN GLN A . n A 1 248 LEU 248 247 247 LEU LEU A . n A 1 249 ALA 249 248 248 ALA ALA A . n A 1 250 ALA 250 249 249 ALA ALA A . n A 1 251 TYR 251 250 250 TYR TYR A . n A 1 252 PHE 252 251 251 PHE PHE A . n A 1 253 THR 253 252 252 THR THR A . n A 1 254 LYS 254 253 253 LYS LYS A . n A 1 255 GLN 255 254 ? ? ? A . n A 1 256 ASN 256 255 ? ? ? A . n A 1 257 ASP 257 256 ? ? ? A . n A 1 258 ALA 258 257 ? ? ? A . n A 1 259 ILE 259 258 ? ? ? A . n A 1 260 ILE 260 259 ? ? ? A . n A 1 261 HIS 261 260 ? ? ? A . n A 1 262 LYS 262 261 ? ? ? A . n A 1 263 LYS 263 262 ? ? ? A . n A 1 264 ILE 264 263 ? ? ? A . n A 1 265 GLU 265 264 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 300 300 ZN ZN A . C 3 PG4 1 301 301 PG4 PG4 A . D 4 NA 1 302 302 NA NA A . E 5 HOH 1 401 303 HOH HOH A . E 5 HOH 2 402 304 HOH HOH A . E 5 HOH 3 403 305 HOH HOH A . E 5 HOH 4 404 306 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 82 A MSE 81 ? MET SELENOMETHIONINE 2 A MSE 124 A MSE 123 ? MET SELENOMETHIONINE 3 A MSE 129 A MSE 128 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D,E 2 1,3 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11970 ? 1 MORE -213 ? 1 'SSA (A^2)' 34940 ? 2 'ABSA (A^2)' 3390 ? 2 MORE -112 ? 2 'SSA (A^2)' 20060 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 102.0490000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1.0000000000 0.0000000000 0.0000000000 102.0490000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LEU 135 ? A LEU 134 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? A VAL 138 ? A VAL 137 ? 1_555 82.0 ? 2 O ? A LEU 135 ? A LEU 134 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? E HOH . ? A HOH 404 ? 1_555 128.5 ? 3 O ? A VAL 138 ? A VAL 137 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? E HOH . ? A HOH 404 ? 1_555 86.7 ? 4 ND1 ? A HIS 153 ? A HIS 152 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 178 ? A CYS 177 ? 1_555 102.0 ? 5 ND1 ? A HIS 153 ? A HIS 152 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 OE2 ? A GLU 181 ? A GLU 180 ? 1_555 110.1 ? 6 SG ? A CYS 178 ? A CYS 177 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 OE2 ? A GLU 181 ? A GLU 180 ? 1_555 124.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-06 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_ref_seq_dif.details' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 35.7484 _pdbx_refine_tls.origin_y 11.0894 _pdbx_refine_tls.origin_z 13.0000 _pdbx_refine_tls.T[1][1] -0.0562 _pdbx_refine_tls.T[2][2] -0.1773 _pdbx_refine_tls.T[3][3] -0.1270 _pdbx_refine_tls.T[1][2] -0.0084 _pdbx_refine_tls.T[1][3] -0.0058 _pdbx_refine_tls.T[2][3] -0.1430 _pdbx_refine_tls.L[1][1] 2.4210 _pdbx_refine_tls.L[2][2] 1.5742 _pdbx_refine_tls.L[3][3] 3.7271 _pdbx_refine_tls.L[1][2] -0.4871 _pdbx_refine_tls.L[1][3] -1.6994 _pdbx_refine_tls.L[2][3] 0.4500 _pdbx_refine_tls.S[1][1] 0.1046 _pdbx_refine_tls.S[2][2] -0.3472 _pdbx_refine_tls.S[3][3] 0.2426 _pdbx_refine_tls.S[1][2] -0.2067 _pdbx_refine_tls.S[1][3] 0.2911 _pdbx_refine_tls.S[2][3] 0.1788 _pdbx_refine_tls.S[2][1] 0.1343 _pdbx_refine_tls.S[3][1] -0.3392 _pdbx_refine_tls.S[3][2] -0.3880 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 37 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 253 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4QVU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE THE CONSTRUCT (RESIDUES 1-264) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 52 ? ? -115.86 73.39 2 1 SER A 117 ? ? -142.74 -65.66 3 1 PHE A 165 ? ? -119.77 -144.44 4 1 SER A 201 ? ? 62.81 -28.41 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 49 ? CG ? A LYS 50 CG 2 1 Y 1 A LYS 49 ? CD ? A LYS 50 CD 3 1 Y 1 A LYS 49 ? CE ? A LYS 50 CE 4 1 Y 1 A LYS 49 ? NZ ? A LYS 50 NZ 5 1 Y 1 A LYS 51 ? CG ? A LYS 52 CG 6 1 Y 1 A LYS 51 ? CD ? A LYS 52 CD 7 1 Y 1 A LYS 51 ? CE ? A LYS 52 CE 8 1 Y 1 A LYS 51 ? NZ ? A LYS 52 NZ 9 1 Y 1 A PHE 52 ? CG ? A PHE 53 CG 10 1 Y 1 A PHE 52 ? CD1 ? A PHE 53 CD1 11 1 Y 1 A PHE 52 ? CD2 ? A PHE 53 CD2 12 1 Y 1 A PHE 52 ? CE1 ? A PHE 53 CE1 13 1 Y 1 A PHE 52 ? CE2 ? A PHE 53 CE2 14 1 Y 1 A PHE 52 ? CZ ? A PHE 53 CZ 15 1 Y 1 A LYS 56 ? CG ? A LYS 57 CG 16 1 Y 1 A LYS 56 ? CD ? A LYS 57 CD 17 1 Y 1 A LYS 56 ? CE ? A LYS 57 CE 18 1 Y 1 A LYS 56 ? NZ ? A LYS 57 NZ 19 1 Y 1 A ASP 57 ? CG ? A ASP 58 CG 20 1 Y 1 A ASP 57 ? OD1 ? A ASP 58 OD1 21 1 Y 1 A ASP 57 ? OD2 ? A ASP 58 OD2 22 1 Y 1 A ASP 67 ? CG ? A ASP 68 CG 23 1 Y 1 A ASP 67 ? OD1 ? A ASP 68 OD1 24 1 Y 1 A ASP 67 ? OD2 ? A ASP 68 OD2 25 1 Y 1 A GLU 78 ? CG ? A GLU 79 CG 26 1 Y 1 A GLU 78 ? CD ? A GLU 79 CD 27 1 Y 1 A GLU 78 ? OE1 ? A GLU 79 OE1 28 1 Y 1 A GLU 78 ? OE2 ? A GLU 79 OE2 29 1 Y 1 A GLU 79 ? CG ? A GLU 80 CG 30 1 Y 1 A GLU 79 ? CD ? A GLU 80 CD 31 1 Y 1 A GLU 79 ? OE1 ? A GLU 80 OE1 32 1 Y 1 A GLU 79 ? OE2 ? A GLU 80 OE2 33 1 Y 1 A ARG 82 ? CG ? A ARG 83 CG 34 1 Y 1 A ARG 82 ? CD ? A ARG 83 CD 35 1 Y 1 A ARG 82 ? NE ? A ARG 83 NE 36 1 Y 1 A ARG 82 ? CZ ? A ARG 83 CZ 37 1 Y 1 A ARG 82 ? NH1 ? A ARG 83 NH1 38 1 Y 1 A ARG 82 ? NH2 ? A ARG 83 NH2 39 1 Y 1 A GLU 99 ? CG ? A GLU 100 CG 40 1 Y 1 A GLU 99 ? CD ? A GLU 100 CD 41 1 Y 1 A GLU 99 ? OE1 ? A GLU 100 OE1 42 1 Y 1 A GLU 99 ? OE2 ? A GLU 100 OE2 43 1 Y 1 A GLU 100 ? CG ? A GLU 101 CG 44 1 Y 1 A GLU 100 ? CD ? A GLU 101 CD 45 1 Y 1 A GLU 100 ? OE1 ? A GLU 101 OE1 46 1 Y 1 A GLU 100 ? OE2 ? A GLU 101 OE2 47 1 Y 1 A LEU 118 ? CG ? A LEU 119 CG 48 1 Y 1 A LEU 118 ? CD1 ? A LEU 119 CD1 49 1 Y 1 A LEU 118 ? CD2 ? A LEU 119 CD2 50 1 Y 1 A HIS 119 ? CG ? A HIS 120 CG 51 1 Y 1 A HIS 119 ? ND1 ? A HIS 120 ND1 52 1 Y 1 A HIS 119 ? CD2 ? A HIS 120 CD2 53 1 Y 1 A HIS 119 ? CE1 ? A HIS 120 CE1 54 1 Y 1 A HIS 119 ? NE2 ? A HIS 120 NE2 55 1 Y 1 A LYS 129 ? CG ? A LYS 130 CG 56 1 Y 1 A LYS 129 ? CD ? A LYS 130 CD 57 1 Y 1 A LYS 129 ? CE ? A LYS 130 CE 58 1 Y 1 A LYS 129 ? NZ ? A LYS 130 NZ 59 1 Y 1 A ARG 160 ? CG ? A ARG 161 CG 60 1 Y 1 A ARG 160 ? CD ? A ARG 161 CD 61 1 Y 1 A ARG 160 ? NE ? A ARG 161 NE 62 1 Y 1 A ARG 160 ? CZ ? A ARG 161 CZ 63 1 Y 1 A ARG 160 ? NH1 ? A ARG 161 NH1 64 1 Y 1 A ARG 160 ? NH2 ? A ARG 161 NH2 65 1 Y 1 A LYS 198 ? CG ? A LYS 199 CG 66 1 Y 1 A LYS 198 ? CD ? A LYS 199 CD 67 1 Y 1 A LYS 198 ? CE ? A LYS 199 CE 68 1 Y 1 A LYS 198 ? NZ ? A LYS 199 NZ 69 1 Y 1 A LYS 253 ? CG ? A LYS 254 CG 70 1 Y 1 A LYS 253 ? CD ? A LYS 254 CD 71 1 Y 1 A LYS 253 ? CE ? A LYS 254 CE 72 1 Y 1 A LYS 253 ? NZ ? A LYS 254 NZ 73 1 N 1 A PG4 301 ? C5 ? C PG4 1 C5 74 1 N 1 A PG4 301 ? C6 ? C PG4 1 C6 75 1 N 1 A PG4 301 ? O4 ? C PG4 1 O4 76 1 N 1 A PG4 301 ? C7 ? C PG4 1 C7 77 1 N 1 A PG4 301 ? C8 ? C PG4 1 C8 78 1 N 1 A PG4 301 ? O5 ? C PG4 1 O5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ASP 2 ? A ASP 3 4 1 Y 1 A THR 3 ? A THR 4 5 1 Y 1 A GLN 4 ? A GLN 5 6 1 Y 1 A GLN 5 ? A GLN 6 7 1 Y 1 A LEU 6 ? A LEU 7 8 1 Y 1 A TYR 7 ? A TYR 8 9 1 Y 1 A PHE 8 ? A PHE 9 10 1 Y 1 A LEU 9 ? A LEU 10 11 1 Y 1 A ASN 10 ? A ASN 11 12 1 Y 1 A ASP 11 ? A ASP 12 13 1 Y 1 A ILE 12 ? A ILE 13 14 1 Y 1 A GLY 13 ? A GLY 14 15 1 Y 1 A LYS 14 ? A LYS 15 16 1 Y 1 A GLN 15 ? A GLN 16 17 1 Y 1 A LYS 16 ? A LYS 17 18 1 Y 1 A PRO 17 ? A PRO 18 19 1 Y 1 A GLU 18 ? A GLU 19 20 1 Y 1 A SER 19 ? A SER 20 21 1 Y 1 A ILE 20 ? A ILE 21 22 1 Y 1 A ARG 21 ? A ARG 22 23 1 Y 1 A ASN 22 ? A ASN 23 24 1 Y 1 A ARG 23 ? A ARG 24 25 1 Y 1 A SER 24 ? A SER 25 26 1 Y 1 A ALA 25 ? A ALA 26 27 1 Y 1 A ALA 26 ? A ALA 27 28 1 Y 1 A CYS 27 ? A CYS 28 29 1 Y 1 A PRO 28 ? A PRO 29 30 1 Y 1 A PHE 29 ? A PHE 30 31 1 Y 1 A CYS 30 ? A CYS 31 32 1 Y 1 A ASP 31 ? A ASP 32 33 1 Y 1 A ARG 32 ? A ARG 33 34 1 Y 1 A GLU 33 ? A GLU 34 35 1 Y 1 A ASN 34 ? A ASN 35 36 1 Y 1 A LEU 35 ? A LEU 36 37 1 Y 1 A THR 36 ? A THR 37 38 1 Y 1 A GLN 254 ? A GLN 255 39 1 Y 1 A ASN 255 ? A ASN 256 40 1 Y 1 A ASP 256 ? A ASP 257 41 1 Y 1 A ALA 257 ? A ALA 258 42 1 Y 1 A ILE 258 ? A ILE 259 43 1 Y 1 A ILE 259 ? A ILE 260 44 1 Y 1 A HIS 260 ? A HIS 261 45 1 Y 1 A LYS 261 ? A LYS 262 46 1 Y 1 A LYS 262 ? A LYS 263 47 1 Y 1 A ILE 263 ? A ILE 264 48 1 Y 1 A GLU 264 ? A GLU 265 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'TETRAETHYLENE GLYCOL' PG4 4 'SODIUM ION' NA 5 water HOH #