data_4R15 # _entry.id 4R15 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R15 pdb_00004r15 10.2210/pdb4r15/pdb NDB NA3141 ? ? RCSB RCSB086768 ? ? WWPDB D_1000086768 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4HIF . unspecified PDB 4HIG . unspecified PDB 4OCB . unspecified PDB 3WBO . unspecified PDB 2HTO . unspecified PDB 1OMK . unspecified PDB 3P4J . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R15 _pdbx_database_status.recvd_initial_deposition_date 2014-08-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Drozdzal, P.' 1 'Gilski, M.' 2 'Kierzek, R.' 3 'Lomozik, L.' 4 'Jaskolski, M.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'High-resolution crystal structure of Z-DNA in complex with Cr(3+) cations.' J.Biol.Inorg.Chem. 20 595 602 2015 JJBCFA GW 0949-8257 2154 ? 25687556 10.1007/s00775-015-1247-5 1 'Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.' 'Acta Crystallogr.,Sect.D' 69 1180 1190 2013 ABCRE6 DK 0907-4449 0766 ? 23695262 10.1107/S0907444913007798 2 'Phosphates in the Z-DNA dodecamer are flexible, but their P-SAD signal is sufficient for structure solution.' 'Acta Crystallogr.,Sect.D' 70 1790 1800 2014 ABCRE6 DK 0907-4449 0766 ? 25004957 10.1107/S1399004714004684 3 'High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 A.' 'Nucleic Acids Res.' 39 6238 6248 2011 NARHAD UK 0305-1048 0389 ? 21459852 10.1093/nar/gkr202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Drozdzal, P.' 1 ? primary 'Gilski, M.' 2 ? primary 'Kierzek, R.' 3 ? primary 'Lomozik, L.' 4 ? primary 'Jaskolski, M.' 5 ? 1 'Drozdzal, P.' 6 ? 1 'Gilski, M.' 7 ? 1 'Kierzek, R.' 8 ? 1 'Lomozik, L.' 9 ? 1 'Jaskolski, M.' 10 ? 2 'Luo, Z.' 11 ? 2 'Dauter, M.' 12 ? 2 'Dauter, Z.' 13 ? 3 'Brzezinski, K.' 14 ? 3 'Brzuszkiewicz, A.' 15 ? 3 'Dauter, M.' 16 ? 3 'Kubicki, M.' 17 ? 3 'Jaskolski, M.' 18 ? 3 'Dauter, Z.' 19 ? # _cell.entry_id 4R15 _cell.length_a 18.140 _cell.length_b 30.440 _cell.length_c 42.940 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R15 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn 'CHROMIUM ION' 51.996 3 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC CONSTRUCT' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4R15 _struct_ref.pdbx_db_accession 4R15 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGCGCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R15 A 1 ? 6 ? 4R15 1 ? 6 ? 1 6 2 1 4R15 B 1 ? 6 ? 4R15 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CR non-polymer . 'CHROMIUM ION' ? 'Cr 3' 51.996 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 4R15 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.66 _exptl_crystal.density_percent_sol 24.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;A 1.5 MM WATER SOLUTION OF DNA MIXED 1:1 V/V WITH 10% MPD, 12 MM SPERMINE*4HCL, 12 MM NACL, 80 MM KCL AND EQUILIBRATED AGAINST 35% MPD, PH 6. FOR CR3+ SOAKING, THE CRYSTAL WAS PLACED FOR SEVERAL DAYS IN 0.002 ML OF THE RESERVOIR SOLUTION MIXED WITH 0.002 ML OF 5 MM [CR(H2O)6]CL3, VAPOR DIFFUSION, HANGING DROP, temperature 292.0K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2011-11-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91841 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4R15 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 24.83 _reflns.d_resolution_high 0.97 _reflns.number_obs 26535 _reflns.number_all 26535 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.016 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.85 _reflns.B_iso_Wilson_estimate 13.586 _reflns.pdbx_redundancy 2.53 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.973 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs 0.432 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.05 _reflns_shell.pdbx_redundancy 2.14 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4R15 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 26535 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.83 _refine.ls_d_res_high 0.97 _refine.ls_percent_reflns_obs 98.4 _refine.ls_R_factor_obs 0.1438 _refine.ls_R_factor_all 0.1447 _refine.ls_R_factor_R_work 0.1438 _refine.ls_R_factor_R_free 0.1849 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.00 _refine.ls_number_reflns_R_free 1858 _refine.ls_number_parameters 3347 _refine.ls_number_restraints 6729 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.(1975) 91, 201' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ;THE REFINEMENT WAS CARRIED OUT AGAINST SEPARATE BIJVOET PAIRS. ANISOTROPIC ATOMIC DISPLACEMENT PARAMETERS WERE USED. ANISOTROPIC REFINEMENT REDUCED FREE R-FACTOR FROM 0.2585 TO 0.1976. HYDROGEN ATOMS WERE ADDED AT RIDING POSITION THE FINAL REFINEMENT WAS CALCULATED USING WEIGHTED FULL-MATRIX LEAST-SQUARES PROCEDURE AND ALL REFLECTIONS. ; _refine.pdbx_starting_model 'PDB ENTRY 4HIF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'CLOWNEY, GELBIN & PARKINSON' _refine.pdbx_stereochem_target_val_spec_case 'PHOSPHATE AND GLYCOSIDIC ANGLES ACCORDING TO PDB MODEL 3P4J' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4R15 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 13 _refine_analyze.occupancy_sum_hydrogen 136.00 _refine_analyze.occupancy_sum_non_hydrogen 280.78 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 310 _refine_hist.d_res_high 0.97 _refine_hist.d_res_low 24.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.028 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0378 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.065 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.096 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4R15 _pdbx_refine.R_factor_all_no_cutoff 0.1447 _pdbx_refine.R_factor_obs_no_cutoff 0.1438 _pdbx_refine.free_R_factor_no_cutoff 0.1849 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 7.00 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1858 _pdbx_refine.R_factor_all_4sig_cutoff 0.1327 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1316 _pdbx_refine.free_R_factor_4sig_cutoff 0.1744 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 6.93 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1459 _pdbx_refine.number_reflns_obs_4sig_cutoff 21571 # _struct.entry_id 4R15 _struct.title 'High-resolution crystal structure of Z-DNA in complex with Cr3+ cations' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R15 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'SELF-COMPLEMENTARY DNA, Z-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Self-complementary dimer of chains A and B' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CR . CR ? ? ? 1_555 F HOH . O A ? A CR 101 A HOH 201 1_555 ? ? ? ? ? ? ? 1.892 ? ? metalc2 metalc ? ? C CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 101 A HOH 212 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc3 metalc ? ? C CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 101 A HOH 215 1_555 ? ? ? ? ? ? ? 1.729 ? ? metalc4 metalc ? ? C CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 101 A HOH 216 1_555 ? ? ? ? ? ? ? 1.788 ? ? metalc5 metalc ? ? C CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 101 A HOH 221 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc6 metalc ? ? C CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 101 A HOH 238 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc7 metalc ? ? D CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 102 A HOH 218 1_555 ? ? ? ? ? ? ? 1.949 ? ? metalc8 metalc ? ? D CR . CR ? ? ? 1_555 F HOH . O B ? A CR 102 A HOH 219 1_555 ? ? ? ? ? ? ? 1.825 ? ? metalc9 metalc ? ? D CR . CR ? ? ? 1_555 F HOH . O A ? A CR 102 A HOH 219 1_555 ? ? ? ? ? ? ? 2.652 ? ? metalc10 metalc ? ? D CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 102 A HOH 220 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc11 metalc ? ? D CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 102 A HOH 224 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc12 metalc ? ? D CR . CR ? ? ? 1_555 F HOH . O ? ? A CR 102 A HOH 236 1_555 ? ? ? ? ? ? ? 1.897 ? ? metalc13 metalc ? ? F HOH . O B ? ? 1_555 E CR . CR ? ? A HOH 201 B CR 101 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc14 metalc ? ? F HOH . O A ? ? 1_555 E CR . CR ? ? A HOH 201 B CR 101 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc15 metalc ? ? F HOH . O ? ? ? 1_555 E CR . CR ? ? A HOH 216 B CR 101 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc16 metalc ? ? E CR . CR ? ? ? 1_555 G HOH . O ? ? B CR 101 B HOH 204 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc17 metalc ? ? E CR . CR ? ? ? 1_555 G HOH . O ? ? B CR 101 B HOH 212 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc18 metalc ? ? E CR . CR ? ? ? 1_555 G HOH . O ? ? B CR 101 B HOH 220 1_555 ? ? ? ? ? ? ? 2.029 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 A ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 A ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 A ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CR 101 ? 7 'BINDING SITE FOR RESIDUE CR A 101' AC2 Software A CR 102 ? 5 'BINDING SITE FOR RESIDUE CR A 102' AC3 Software B CR 101 ? 8 'BINDING SITE FOR RESIDUE CR B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH F . ? HOH A 201 . ? 1_555 ? 2 AC1 7 HOH F . ? HOH A 212 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH A 215 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 216 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 221 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH A 238 . ? 1_555 ? 7 AC1 7 CR E . ? CR B 101 . ? 1_555 ? 8 AC2 5 HOH F . ? HOH A 218 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 219 . ? 1_555 ? 10 AC2 5 HOH F . ? HOH A 220 . ? 1_555 ? 11 AC2 5 HOH F . ? HOH A 224 . ? 1_555 ? 12 AC2 5 HOH F . ? HOH A 236 . ? 1_555 ? 13 AC3 8 CR C . ? CR A 101 . ? 1_555 ? 14 AC3 8 HOH F . ? HOH A 201 . ? 1_555 ? 15 AC3 8 HOH F . ? HOH A 215 . ? 1_555 ? 16 AC3 8 HOH F . ? HOH A 216 . ? 1_555 ? 17 AC3 8 HOH F . ? HOH A 238 . ? 1_555 ? 18 AC3 8 HOH G . ? HOH B 204 . ? 1_555 ? 19 AC3 8 HOH G . ? HOH B 212 . ? 1_555 ? 20 AC3 8 HOH G . ? HOH B 220 . ? 1_555 ? # _database_PDB_matrix.entry_id 4R15 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4R15 _atom_sites.fract_transf_matrix[1][1] 0.055127 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032852 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023288 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CR N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 7 7 DC DC B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 DC 3 9 9 DC DC B . n B 1 4 DG 4 10 10 DG DG B . n B 1 5 DC 5 11 11 DC DC B . n B 1 6 DG 6 12 12 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CR 1 101 2 CR CR A . D 2 CR 1 102 3 CR CR A . E 2 CR 1 101 1 CR CR B . F 3 HOH 1 201 1 HOH HOH A . F 3 HOH 2 202 2 HOH HOH A . F 3 HOH 3 203 6 HOH HOH A . F 3 HOH 4 204 7 HOH HOH A . F 3 HOH 5 205 9 HOH HOH A . F 3 HOH 6 206 10 HOH HOH A . F 3 HOH 7 207 14 HOH HOH A . F 3 HOH 8 208 19 HOH HOH A . F 3 HOH 9 209 21 HOH HOH A . F 3 HOH 10 210 22 HOH HOH A . F 3 HOH 11 211 23 HOH HOH A . F 3 HOH 12 212 27 HOH HOH A . F 3 HOH 13 213 28 HOH HOH A . F 3 HOH 14 214 29 HOH HOH A . F 3 HOH 15 215 30 HOH HOH A . F 3 HOH 16 216 31 HOH HOH A . F 3 HOH 17 217 32 HOH HOH A . F 3 HOH 18 218 36 HOH HOH A . F 3 HOH 19 219 37 HOH HOH A . F 3 HOH 20 220 38 HOH HOH A . F 3 HOH 21 221 40 HOH HOH A . F 3 HOH 22 222 42 HOH HOH A . F 3 HOH 23 223 43 HOH HOH A . F 3 HOH 24 224 48 HOH HOH A . F 3 HOH 25 225 49 HOH HOH A . F 3 HOH 26 226 50 HOH HOH A . F 3 HOH 27 227 51 HOH HOH A . F 3 HOH 28 228 52 HOH HOH A . F 3 HOH 29 229 54 HOH HOH A . F 3 HOH 30 230 55 HOH HOH A . F 3 HOH 31 231 56 HOH HOH A . F 3 HOH 32 232 57 HOH HOH A . F 3 HOH 33 233 59 HOH HOH A . F 3 HOH 34 234 60 HOH HOH A . F 3 HOH 35 235 63 HOH HOH A . F 3 HOH 36 236 64 HOH HOH A . F 3 HOH 37 237 65 HOH HOH A . F 3 HOH 38 238 66 HOH HOH A . F 3 HOH 39 239 11 HOH HOH A . G 3 HOH 1 201 3 HOH HOH B . G 3 HOH 2 202 4 HOH HOH B . G 3 HOH 3 203 5 HOH HOH B . G 3 HOH 4 204 8 HOH HOH B . G 3 HOH 5 205 12 HOH HOH B . G 3 HOH 6 206 13 HOH HOH B . G 3 HOH 7 207 15 HOH HOH B . G 3 HOH 8 208 16 HOH HOH B . G 3 HOH 9 209 17 HOH HOH B . G 3 HOH 10 210 18 HOH HOH B . G 3 HOH 11 211 20 HOH HOH B . G 3 HOH 12 212 24 HOH HOH B . G 3 HOH 13 213 25 HOH HOH B . G 3 HOH 14 214 26 HOH HOH B . G 3 HOH 15 215 33 HOH HOH B . G 3 HOH 16 216 34 HOH HOH B . G 3 HOH 17 217 35 HOH HOH B . G 3 HOH 18 218 39 HOH HOH B . G 3 HOH 19 219 41 HOH HOH B . G 3 HOH 20 220 45 HOH HOH B . G 3 HOH 21 221 46 HOH HOH B . G 3 HOH 22 222 47 HOH HOH B . G 3 HOH 23 223 53 HOH HOH B . G 3 HOH 24 224 58 HOH HOH B . G 3 HOH 25 225 61 HOH HOH B . G 3 HOH 26 226 62 HOH HOH B . G 3 HOH 27 227 67 HOH HOH B . G 3 HOH 28 228 68 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1120 ? 1 MORE -28 ? 1 'SSA (A^2)' 2330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O A F HOH . ? A HOH 201 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 122.9 ? 2 O A F HOH . ? A HOH 201 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 95.7 ? 3 O ? F HOH . ? A HOH 212 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 80.3 ? 4 O A F HOH . ? A HOH 201 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 216 ? 1_555 52.0 ? 5 O ? F HOH . ? A HOH 212 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 216 ? 1_555 168.2 ? 6 O ? F HOH . ? A HOH 215 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 216 ? 1_555 110.1 ? 7 O A F HOH . ? A HOH 201 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 152.2 ? 8 O ? F HOH . ? A HOH 212 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 82.0 ? 9 O ? F HOH . ? A HOH 215 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 101.0 ? 10 O ? F HOH . ? A HOH 216 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 101.0 ? 11 O A F HOH . ? A HOH 201 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 36.2 ? 12 O ? F HOH . ? A HOH 212 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 86.7 ? 13 O ? F HOH . ? A HOH 215 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 89.5 ? 14 O ? F HOH . ? A HOH 216 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 87.6 ? 15 O ? F HOH . ? A HOH 221 ? 1_555 CR ? C CR . ? A CR 101 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 163.1 ? 16 O ? F HOH . ? A HOH 218 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O B F HOH . ? A HOH 219 ? 1_555 88.8 ? 17 O ? F HOH . ? A HOH 218 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O A F HOH . ? A HOH 219 ? 1_555 68.8 ? 18 O B F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O A F HOH . ? A HOH 219 ? 1_555 23.2 ? 19 O ? F HOH . ? A HOH 218 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 94.1 ? 20 O B F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 85.0 ? 21 O A F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 75.7 ? 22 O ? F HOH . ? A HOH 218 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 224 ? 1_555 66.4 ? 23 O B F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 224 ? 1_555 106.6 ? 24 O A F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 224 ? 1_555 106.9 ? 25 O ? F HOH . ? A HOH 220 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 224 ? 1_555 156.6 ? 26 O ? F HOH . ? A HOH 218 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 83.9 ? 27 O B F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 161.3 ? 28 O A F HOH . ? A HOH 219 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 140.4 ? 29 O ? F HOH . ? A HOH 220 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 78.4 ? 30 O ? F HOH . ? A HOH 224 ? 1_555 CR ? D CR . ? A CR 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 86.3 ? 31 O B F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O A F HOH . ? A HOH 201 ? 1_555 34.3 ? 32 O B F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? F HOH . ? A HOH 216 ? 1_555 63.3 ? 33 O A F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? F HOH . ? A HOH 216 ? 1_555 39.6 ? 34 O B F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 204 ? 1_555 64.8 ? 35 O A F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 204 ? 1_555 71.1 ? 36 O ? F HOH . ? A HOH 216 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 204 ? 1_555 49.7 ? 37 O B F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 155.0 ? 38 O A F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 141.4 ? 39 O ? F HOH . ? A HOH 216 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 102.7 ? 40 O ? G HOH . ? B HOH 204 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 90.3 ? 41 O B F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 98.9 ? 42 O A F HOH . ? A HOH 201 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 131.1 ? 43 O ? F HOH . ? A HOH 216 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 154.2 ? 44 O ? G HOH . ? B HOH 204 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 106.9 ? 45 O ? G HOH . ? B HOH 212 ? 1_555 CR ? E CR . ? B CR 101 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 86.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-04 2 'Structure model' 1 1 2015-04-22 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.value' 12 3 'Structure model' '_struct_conn.pdbx_dist_value' 13 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 14 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 15 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 16 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 SHELXL-97 refinement . ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 110.24 106.80 3.44 0.50 N 2 1 "O3'" B DG 8 ? B P B DC 9 ? B OP1 B DC 9 ? B 118.05 110.50 7.55 1.10 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CR CR CR N N 1 DC OP3 O N N 2 DC P P N N 3 DC OP1 O N N 4 DC OP2 O N N 5 DC "O5'" O N N 6 DC "C5'" C N N 7 DC "C4'" C N R 8 DC "O4'" O N N 9 DC "C3'" C N S 10 DC "O3'" O N N 11 DC "C2'" C N N 12 DC "C1'" C N R 13 DC N1 N N N 14 DC C2 C N N 15 DC O2 O N N 16 DC N3 N N N 17 DC C4 C N N 18 DC N4 N N N 19 DC C5 C N N 20 DC C6 C N N 21 DC HOP3 H N N 22 DC HOP2 H N N 23 DC "H5'" H N N 24 DC "H5''" H N N 25 DC "H4'" H N N 26 DC "H3'" H N N 27 DC "HO3'" H N N 28 DC "H2'" H N N 29 DC "H2''" H N N 30 DC "H1'" H N N 31 DC H41 H N N 32 DC H42 H N N 33 DC H5 H N N 34 DC H6 H N N 35 DG OP3 O N N 36 DG P P N N 37 DG OP1 O N N 38 DG OP2 O N N 39 DG "O5'" O N N 40 DG "C5'" C N N 41 DG "C4'" C N R 42 DG "O4'" O N N 43 DG "C3'" C N S 44 DG "O3'" O N N 45 DG "C2'" C N N 46 DG "C1'" C N R 47 DG N9 N Y N 48 DG C8 C Y N 49 DG N7 N Y N 50 DG C5 C Y N 51 DG C6 C N N 52 DG O6 O N N 53 DG N1 N N N 54 DG C2 C N N 55 DG N2 N N N 56 DG N3 N N N 57 DG C4 C Y N 58 DG HOP3 H N N 59 DG HOP2 H N N 60 DG "H5'" H N N 61 DG "H5''" H N N 62 DG "H4'" H N N 63 DG "H3'" H N N 64 DG "HO3'" H N N 65 DG "H2'" H N N 66 DG "H2''" H N N 67 DG "H1'" H N N 68 DG H8 H N N 69 DG H1 H N N 70 DG H21 H N N 71 DG H22 H N N 72 HOH O O N N 73 HOH H1 H N N 74 HOH H2 H N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 4R15 _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.318 -0.167 0.134 2.696 0.183 1.468 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.825 0.115 -0.138 1.484 -0.787 -3.317 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.271 -0.120 0.044 8.420 -0.893 0.748 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.337 -0.137 -0.005 -7.381 -1.744 0.283 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.265 -0.139 0.049 6.950 -0.210 1.011 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.221 -0.102 0.086 -5.175 -0.338 0.330 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.278 5.617 3.441 2.233 1.319 -10.287 -32.432 4.975 2.582 -7.207 12.204 -10.608 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.312 -1.247 3.344 -2.199 -2.986 -48.210 1.757 -0.554 3.250 3.650 -2.688 -48.344 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.135 5.622 3.845 0.581 -1.861 -7.832 -32.591 3.254 5.016 13.352 4.166 -8.071 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.098 -0.467 3.119 -0.618 -3.821 -53.303 0.748 -0.146 3.079 4.253 -0.688 -53.433 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.130 5.677 3.767 -1.173 -0.997 -10.160 -29.512 -3.293 4.259 5.589 -6.574 -10.276 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHROMIUM ION' CR 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4HIF _pdbx_initial_refinement_model.details 'PDB ENTRY 4HIF' #