HEADER LIGASE 13-AUG-14 4R2Y TITLE CRYSTAL STRUCTURE OF APC11 RING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANAPHASE-PROMOTING COMPLEX SUBUNIT 11; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RING DOMAIN (UNP RESIDUES 17-84); COMPND 5 SYNONYM: APC11, CYCLOSOME SUBUNIT 11, HEPATOCELLULAR CARCINOMA- COMPND 6 ASSOCIATED RING FINGER PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANAPC11, HSPC214; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RING DOMAIN, E3 UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.BROWN,E.R.WATSON,F.WEISSMANN,M.A.JARVIS,R.VANDERLINDEN, AUTHOR 2 C.R.R.GRACE,J.J.FRYE,P.DUBE,R.QIAO,G.PETZOLD,S.E.CHO,O.ALSHARIF, AUTHOR 3 J.BAO,J.ZHENG,A.NOURSE,I.KURINOV,J.M.PETERS,H.STARK,B.A.SCHULMAN REVDAT 3 28-FEB-24 4R2Y 1 REMARK LINK REVDAT 2 19-NOV-14 4R2Y 1 JRNL REVDAT 1 29-OCT-14 4R2Y 0 JRNL AUTH N.G.BROWN,E.R.WATSON,F.WEISSMANN,M.A.JARVIS,R.VANDERLINDEN, JRNL AUTH 2 C.R.GRACE,J.J.FRYE,R.QIAO,P.DUBE,G.PETZOLD,S.E.CHO, JRNL AUTH 3 O.ALSHARIF,J.BAO,I.F.DAVIDSON,J.J.ZHENG,A.NOURSE,I.KURINOV, JRNL AUTH 4 J.M.PETERS,H.STARK,B.A.SCHULMAN JRNL TITL MECHANISM OF POLYUBIQUITINATION BY HUMAN ANAPHASE-PROMOTING JRNL TITL 2 COMPLEX: RING REPURPOSING FOR UBIQUITIN CHAIN ASSEMBLY. JRNL REF MOL.CELL V. 56 246 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25306923 JRNL DOI 10.1016/J.MOLCEL.2014.09.009 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 24442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.7195 - 4.2294 0.97 1734 155 0.1999 0.2092 REMARK 3 2 4.2294 - 3.3570 0.99 1695 150 0.1671 0.1938 REMARK 3 3 3.3570 - 2.9327 0.98 1661 149 0.1839 0.2396 REMARK 3 4 2.9327 - 2.6646 0.98 1666 148 0.1961 0.2308 REMARK 3 5 2.6646 - 2.4736 0.98 1670 149 0.1893 0.2411 REMARK 3 6 2.4736 - 2.3277 0.96 1614 143 0.1871 0.2146 REMARK 3 7 2.3277 - 2.2111 0.97 1645 148 0.1837 0.2528 REMARK 3 8 2.2111 - 2.1149 0.97 1639 145 0.1863 0.2032 REMARK 3 9 2.1149 - 2.0335 0.96 1618 144 0.1858 0.2328 REMARK 3 10 2.0335 - 1.9633 0.97 1637 147 0.1859 0.2330 REMARK 3 11 1.9633 - 1.9019 0.96 1610 142 0.2042 0.2765 REMARK 3 12 1.9019 - 1.8475 0.96 1612 145 0.2193 0.2841 REMARK 3 13 1.8475 - 1.7989 0.88 1475 131 0.2599 0.2670 REMARK 3 14 1.7989 - 1.7550 0.69 1166 104 0.3180 0.3377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46490 REMARK 3 B22 (A**2) : -0.04580 REMARK 3 B33 (A**2) : 0.51070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21860 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2098 REMARK 3 ANGLE : 1.169 2829 REMARK 3 CHIRALITY : 0.083 271 REMARK 3 PLANARITY : 0.007 368 REMARK 3 DIHEDRAL : 18.125 765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 43.5023 1.6788 15.4601 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0658 REMARK 3 T33: 0.0985 T12: 0.0071 REMARK 3 T13: -0.0082 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.3214 L22: 0.2878 REMARK 3 L33: 0.7040 L12: 0.1101 REMARK 3 L13: -0.2524 L23: 0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: 0.0450 S13: 0.0181 REMARK 3 S21: 0.0137 S22: 0.0460 S23: -0.0665 REMARK 3 S31: 0.0032 S32: -0.0127 S33: -0.0689 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS-RAPD REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.755 REMARK 200 RESOLUTION RANGE LOW (A) : 61.681 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.2 M NANO3, 0.1 M BIS REMARK 280 -TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE STRUCTURE IS OF A DOMAIN-SWAPPED DIMER. THE DOMAIN SWAP REMARK 300 OCCURS AT VAL 69. TO GENERATE THE BIOLOGICAL UNIT, IT IS NECESSARY REMARK 300 TO PAIR RESIDUES 21-68 FROM CHAIN A WITH 69-84 OF CHAIN B, RESIDUES REMARK 300 21-68 FROM CHAIN B WITH 69-84 OF CHAIN A, RESIDUES 20-68 OF CHAIN C REMARK 300 WITH 69-84 OF CHAIN D, AND 20-68 OF CHAIN D WITH 69-84 OF CHAIN C. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 84.26590 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.68067 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.89200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 VAL B 17 REMARK 465 ALA B 18 REMARK 465 ASN B 19 REMARK 465 ASP B 20 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 PRO B 40 REMARK 465 GLY B 41 REMARK 465 ASP B 42 REMARK 465 VAL C 17 REMARK 465 ALA C 18 REMARK 465 ASN C 19 REMARK 465 VAL D 17 REMARK 465 ALA D 18 REMARK 465 ASN D 19 REMARK 465 VAL D 39 REMARK 465 PRO D 40 REMARK 465 GLY D 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 ASP C 20 CG OD1 OD2 REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 GLU D 84 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 9.09 88.29 REMARK 500 SER B 52 -2.96 83.67 REMARK 500 SER C 52 3.16 87.11 REMARK 500 SER D 52 4.03 89.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 26 SG 111.4 REMARK 620 3 HIS A 56 ND1 105.8 98.2 REMARK 620 4 CYS A 59 SG 116.2 107.2 116.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 CYS A 37 SG 117.4 REMARK 620 3 CYS A 44 SG 108.0 113.6 REMARK 620 4 HIS A 58 ND1 112.4 93.3 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 HIS A 53 ND1 112.5 REMARK 620 3 CYS B 73 SG 105.7 111.7 REMARK 620 4 CYS B 76 SG 109.2 111.2 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 CYS A 76 SG 116.4 REMARK 620 3 CYS B 51 SG 103.1 110.2 REMARK 620 4 HIS B 53 ND1 113.9 105.7 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 23 SG REMARK 620 2 CYS B 26 SG 109.5 REMARK 620 3 HIS B 56 ND1 102.3 99.7 REMARK 620 4 CYS B 59 SG 116.0 109.7 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 34 SG REMARK 620 2 CYS B 37 SG 114.3 REMARK 620 3 CYS B 44 SG 103.9 114.1 REMARK 620 4 HIS B 58 ND1 113.8 100.5 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 23 SG REMARK 620 2 CYS C 26 SG 111.1 REMARK 620 3 HIS C 56 ND1 101.1 98.7 REMARK 620 4 CYS C 59 SG 116.6 108.3 119.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 34 SG REMARK 620 2 CYS C 37 SG 115.4 REMARK 620 3 CYS C 44 SG 111.3 114.6 REMARK 620 4 HIS C 58 ND1 113.8 94.2 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 51 SG REMARK 620 2 HIS C 53 ND1 113.3 REMARK 620 3 CYS D 73 SG 105.6 106.5 REMARK 620 4 CYS D 76 SG 108.7 113.8 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 73 SG REMARK 620 2 CYS C 76 SG 112.5 REMARK 620 3 CYS D 51 SG 105.3 112.8 REMARK 620 4 HIS D 53 ND1 109.8 111.6 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 23 SG REMARK 620 2 CYS D 26 SG 113.0 REMARK 620 3 HIS D 56 ND1 101.8 99.6 REMARK 620 4 CYS D 59 SG 118.7 107.8 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 34 SG REMARK 620 2 CYS D 37 SG 114.5 REMARK 620 3 CYS D 44 SG 108.0 112.2 REMARK 620 4 HIS D 58 ND1 114.8 97.2 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 103 DBREF 4R2Y A 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 DBREF 4R2Y B 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 DBREF 4R2Y C 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 DBREF 4R2Y D 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 SEQRES 1 A 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 A 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 A 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 A 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 A 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 A 68 PHE LYS GLU SEQRES 1 B 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 B 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 B 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 B 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 B 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 B 68 PHE LYS GLU SEQRES 1 C 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 C 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 C 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 C 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 C 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 C 68 PHE LYS GLU SEQRES 1 D 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 D 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 D 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 D 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 D 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 D 68 PHE LYS GLU HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET ZN B 101 1 HET ZN B 102 1 HET ZN B 103 1 HET ZN C 101 1 HET ZN C 102 1 HET ZN C 103 1 HET ZN D 101 1 HET ZN D 102 1 HET ZN D 103 1 HETNAM ZN ZINC ION FORMUL 5 ZN 12(ZN 2+) FORMUL 17 HOH *208(H2 O) HELIX 1 1 CYS A 34 LYS A 38 5 5 HELIX 2 2 MET A 57 GLN A 68 1 12 HELIX 3 3 MET B 57 GLN B 68 1 12 HELIX 4 4 MET C 57 GLN C 68 1 12 HELIX 5 5 MET D 57 GLN D 68 1 12 SHEET 1 A 2 LEU A 46 TRP A 48 0 SHEET 2 A 2 CYS A 54 HIS A 56 -1 O PHE A 55 N VAL A 47 SHEET 1 B 2 LEU B 46 TRP B 48 0 SHEET 2 B 2 CYS B 54 HIS B 56 -1 O PHE B 55 N VAL B 47 SHEET 1 C 2 LEU C 46 TRP C 48 0 SHEET 2 C 2 CYS C 54 HIS C 56 -1 O PHE C 55 N VAL C 47 SHEET 1 D 2 LEU D 46 TRP D 48 0 SHEET 2 D 2 CYS D 54 HIS D 56 -1 O PHE D 55 N VAL D 47 LINK SG CYS A 23 ZN ZN A 101 1555 1555 2.33 LINK SG CYS A 26 ZN ZN A 101 1555 1555 2.39 LINK SG CYS A 34 ZN ZN A 103 1555 1555 2.31 LINK SG CYS A 37 ZN ZN A 103 1555 1555 2.36 LINK SG CYS A 44 ZN ZN A 103 1555 1555 2.35 LINK SG CYS A 51 ZN ZN A 102 1555 1555 2.33 LINK ND1 HIS A 53 ZN ZN A 102 1555 1555 1.96 LINK ND1 HIS A 56 ZN ZN A 101 1555 1555 2.09 LINK ND1 HIS A 58 ZN ZN A 103 1555 1555 2.11 LINK SG CYS A 59 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 73 ZN ZN B 102 1555 1555 2.29 LINK SG CYS A 76 ZN ZN B 102 1555 1555 2.33 LINK ZN ZN A 102 SG CYS B 73 1555 1555 2.36 LINK ZN ZN A 102 SG CYS B 76 1555 1555 2.42 LINK SG CYS B 23 ZN ZN B 101 1555 1555 2.38 LINK SG CYS B 26 ZN ZN B 101 1555 1555 2.35 LINK SG CYS B 34 ZN ZN B 103 1555 1555 2.38 LINK SG CYS B 37 ZN ZN B 103 1555 1555 2.30 LINK SG CYS B 44 ZN ZN B 103 1555 1555 2.37 LINK SG CYS B 51 ZN ZN B 102 1555 1555 2.38 LINK ND1 HIS B 53 ZN ZN B 102 1555 1555 2.15 LINK ND1 HIS B 56 ZN ZN B 101 1555 1555 2.13 LINK ND1 HIS B 58 ZN ZN B 103 1555 1555 2.07 LINK SG CYS B 59 ZN ZN B 101 1555 1555 2.31 LINK SG CYS C 23 ZN ZN C 101 1555 1555 2.35 LINK SG CYS C 26 ZN ZN C 101 1555 1555 2.37 LINK SG CYS C 34 ZN ZN C 102 1555 1555 2.30 LINK SG CYS C 37 ZN ZN C 102 1555 1555 2.38 LINK SG CYS C 44 ZN ZN C 102 1555 1555 2.35 LINK SG CYS C 51 ZN ZN C 103 1555 1555 2.31 LINK ND1 HIS C 53 ZN ZN C 103 1555 1555 2.15 LINK ND1 HIS C 56 ZN ZN C 101 1555 1555 2.23 LINK ND1 HIS C 58 ZN ZN C 102 1555 1555 2.11 LINK SG CYS C 59 ZN ZN C 101 1555 1555 2.28 LINK SG CYS C 73 ZN ZN D 103 1555 1555 2.40 LINK SG CYS C 76 ZN ZN D 103 1555 1555 2.30 LINK ZN ZN C 103 SG CYS D 73 1555 1555 2.37 LINK ZN ZN C 103 SG CYS D 76 1555 1555 2.42 LINK SG CYS D 23 ZN ZN D 102 1555 1555 2.27 LINK SG CYS D 26 ZN ZN D 102 1555 1555 2.30 LINK SG CYS D 34 ZN ZN D 101 1555 1555 2.30 LINK SG CYS D 37 ZN ZN D 101 1555 1555 2.31 LINK SG CYS D 44 ZN ZN D 101 1555 1555 2.27 LINK SG CYS D 51 ZN ZN D 103 1555 1555 2.28 LINK ND1 HIS D 53 ZN ZN D 103 1555 1555 2.20 LINK ND1 HIS D 56 ZN ZN D 102 1555 1555 2.14 LINK ND1 HIS D 58 ZN ZN D 101 1555 1555 2.15 LINK SG CYS D 59 ZN ZN D 102 1555 1555 2.36 SITE 1 AC1 4 CYS A 23 CYS A 26 HIS A 56 CYS A 59 SITE 1 AC2 4 CYS A 51 HIS A 53 CYS B 73 CYS B 76 SITE 1 AC3 4 CYS A 34 CYS A 37 CYS A 44 HIS A 58 SITE 1 AC4 4 CYS B 23 CYS B 26 HIS B 56 CYS B 59 SITE 1 AC5 4 CYS A 73 CYS A 76 CYS B 51 HIS B 53 SITE 1 AC6 4 CYS B 34 CYS B 37 CYS B 44 HIS B 58 SITE 1 AC7 4 CYS C 23 CYS C 26 HIS C 56 CYS C 59 SITE 1 AC8 4 CYS C 34 CYS C 37 CYS C 44 HIS C 58 SITE 1 AC9 4 CYS C 51 HIS C 53 CYS D 73 CYS D 76 SITE 1 BC1 4 CYS D 34 CYS D 37 CYS D 44 HIS D 58 SITE 1 BC2 4 CYS D 23 CYS D 26 HIS D 56 CYS D 59 SITE 1 BC3 4 CYS C 73 CYS C 76 CYS D 51 HIS D 53 CRYST1 52.446 39.876 65.038 90.00 108.49 90.00 P 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019067 0.000000 0.006375 0.00000 SCALE2 0.000000 0.025078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016212 0.00000