data_4R4A # _entry.id 4R4A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R4A pdb_00004r4a 10.2210/pdb4r4a/pdb NDB NA3150 ? ? RCSB RCSB086880 ? ? WWPDB D_1000086880 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4R44 'Racemic crystal structure of a tetramolecular DNA G-quadruplex' unspecified PDB 4R45 'Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)' unspecified PDB 4R47 'Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)' unspecified PDB 4R48 'Racemic crystal structure of a calcium-bound DNA four-way junction' unspecified PDB 4R49 'Racemic crystal structure of a calcium-bound B-DNA duplex' unspecified PDB 4R4D 'Racemic crystal structure of a magnesium-bound B-DNA duplex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R4A _pdbx_database_status.recvd_initial_deposition_date 2014-08-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Collie, G.W.' 2 'Kauffmann, B.' 3 'Huc, I.' 4 # _citation.id primary _citation.title 'Racemic DNA crystallography.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 53 _citation.page_first 14424 _citation.page_last 14427 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25358289 _citation.pdbx_database_id_DOI 10.1002/anie.201409014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Collie, G.W.' 2 ? primary 'Kauffmann, B.' 3 ? primary 'Huc, I.' 4 ? # _cell.entry_id 4R4A _cell.length_a 26.286 _cell.length_b 32.352 _cell.length_c 33.500 _cell.angle_alpha 62.25 _cell.angle_beta 73.14 _cell.angle_gamma 68.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R4A _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'" 3045.992 2 ? ? ? 'B-DNA duplex' 2 non-polymer syn 'COBALT (II) ION' 58.933 5 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 109 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGTACCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4R4A _struct_ref.pdbx_db_accession 4R4A _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CCGGTACCGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R4A A 1 ? 10 ? 4R4A 1 ? 10 ? 1 10 2 1 4R4A B 1 ? 10 ? 4R4A 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 4R4A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;0.5 mM L,D-CCGGTACCGG, 75 mM sodium cacodylate, 10 mM cobalt chloride, 1 mM spermine, 40% v/v MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2014-06-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9998 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9998 # _reflns.entry_id 4R4A _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 29.33 _reflns.d_resolution_high 1.49 _reflns.number_obs 14025 _reflns.number_all 14705 _reflns.percent_possible_obs 95.38 _reflns.pdbx_Rmerge_I_obs 0.0480 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.81 _reflns.B_iso_Wilson_estimate 48.09 _reflns.pdbx_redundancy 1.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.49 _reflns_shell.d_res_low 1.54 _reflns_shell.percent_possible_all 89.57 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4R4A _refine.ls_number_reflns_obs 13328 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.33 _refine.ls_d_res_high 1.49 _refine.ls_percent_reflns_obs 95.37 _refine.ls_R_factor_obs 0.21008 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20885 _refine.ls_R_factor_R_free 0.23257 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 697 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 12.445 _refine.aniso_B[1][1] 0.28 _refine.aniso_B[2][2] -0.04 _refine.aniso_B[3][3] -0.06 _refine.aniso_B[1][2] 0.12 _refine.aniso_B[1][3] -0.19 _refine.aniso_B[2][3] 0.13 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3R86' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.074 _refine.overall_SU_ML 0.032 _refine.overall_SU_B 0.839 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 532 _refine_hist.d_res_high 1.49 _refine_hist.d_res_low 29.33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.011 ? 501 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.847 1.181 ? 762 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.100 0.200 ? 66 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.039 0.020 ? 228 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.490 _refine_ls_shell.d_res_low 1.529 _refine_ls_shell.number_reflns_R_work 919 _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.percent_reflns_obs 87.81 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4R4A _struct.title 'Racemic crystal structure of a cobalt-bound B-DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R4A _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'racemic DNA, racemates, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 C CO . CO ? ? A DG 3 A CO 101 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc2 metalc ? ? A DG 9 N7 ? ? ? 1_555 D CO . CO ? ? A DG 9 A CO 102 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc3 metalc ? ? A DG 10 O6 ? ? ? 1_555 D CO . CO ? ? A DG 10 A CO 102 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc7 metalc ? ? C CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 101 A HOH 208 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc8 metalc ? ? C CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 101 B HOH 212 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc9 metalc ? ? D CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc10 metalc ? ? D CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 102 A HOH 207 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc11 metalc ? ? D CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc12 metalc ? ? E CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 103 A HOH 216 1_555 ? ? ? ? ? ? ? 1.943 ? ? metalc13 metalc ? ? E CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 103 A HOH 220 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc14 metalc ? ? E CO . CO ? ? ? 1_555 I HOH . O ? ? A CO 103 A HOH 248 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc15 metalc ? ? E CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 103 B HOH 207 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc16 metalc ? ? E CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 103 B HOH 220 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc17 metalc ? ? E CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 103 B HOH 230 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc18 metalc ? ? B DG 3 N7 ? ? ? 1_555 H CO . CO ? ? B DG 3 B CO 103 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc19 metalc ? ? B DG 9 N7 ? ? ? 1_555 G CO . CO ? ? B DG 9 B CO 102 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc20 metalc ? ? G CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 102 B HOH 202 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc21 metalc ? ? G CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 102 B HOH 209 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc22 metalc ? ? G CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 102 B HOH 210 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc23 metalc ? ? G CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 102 B HOH 211 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc24 metalc ? ? G CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 102 B HOH 213 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc25 metalc ? ? H CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 103 B HOH 203 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc26 metalc ? ? H CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 103 B HOH 215 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc27 metalc ? ? H CO . CO ? ? ? 1_555 J HOH . O ? ? B CO 103 B HOH 218 1_555 ? ? ? ? ? ? ? 2.124 ? ? hydrog1 hydrog ? ? A DC 1 N3 A ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 A ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 A ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 A ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 A ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 A ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CO 101 ? 6 'BINDING SITE FOR RESIDUE CO A 101' AC2 Software A CO 102 ? 5 'BINDING SITE FOR RESIDUE CO A 102' AC3 Software A CO 103 ? 6 'BINDING SITE FOR RESIDUE CO A 103' AC4 Software B SPM 101 ? 10 'BINDING SITE FOR RESIDUE SPM B 101' AC5 Software B CO 102 ? 6 'BINDING SITE FOR RESIDUE CO B 102' AC6 Software B CO 103 ? 4 'BINDING SITE FOR RESIDUE CO B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 6 HOH I . ? HOH A 201 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 202 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 204 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH A 208 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH B 212 . ? 1_555 ? 7 AC2 5 DG A 9 ? DG A 9 . ? 1_555 ? 8 AC2 5 DG A 10 ? DG A 10 . ? 1_555 ? 9 AC2 5 HOH I . ? HOH A 203 . ? 1_555 ? 10 AC2 5 HOH I . ? HOH A 207 . ? 1_555 ? 11 AC2 5 HOH I . ? HOH A 212 . ? 1_555 ? 12 AC3 6 HOH I . ? HOH A 216 . ? 1_555 ? 13 AC3 6 HOH I . ? HOH A 220 . ? 1_555 ? 14 AC3 6 HOH I . ? HOH A 248 . ? 1_555 ? 15 AC3 6 HOH J . ? HOH B 207 . ? 1_555 ? 16 AC3 6 HOH J . ? HOH B 220 . ? 1_555 ? 17 AC3 6 HOH J . ? HOH B 230 . ? 1_555 ? 18 AC4 10 DC A 1 ? DC A 1 . ? 1_655 ? 19 AC4 10 DC A 2 ? DC A 2 . ? 1_655 ? 20 AC4 10 HOH I . ? HOH A 223 . ? 1_565 ? 21 AC4 10 DC B 2 ? DC B 2 . ? 1_565 ? 22 AC4 10 DG B 3 ? DG B 3 . ? 1_565 ? 23 AC4 10 DC B 7 ? DC B 7 . ? 1_555 ? 24 AC4 10 DC B 8 ? DC B 8 . ? 1_555 ? 25 AC4 10 HOH J . ? HOH B 201 . ? 1_565 ? 26 AC4 10 HOH J . ? HOH B 206 . ? 1_555 ? 27 AC4 10 HOH J . ? HOH B 256 . ? 1_565 ? 28 AC5 6 DG B 9 ? DG B 9 . ? 1_555 ? 29 AC5 6 HOH J . ? HOH B 202 . ? 1_555 ? 30 AC5 6 HOH J . ? HOH B 209 . ? 1_555 ? 31 AC5 6 HOH J . ? HOH B 210 . ? 1_555 ? 32 AC5 6 HOH J . ? HOH B 211 . ? 1_555 ? 33 AC5 6 HOH J . ? HOH B 213 . ? 1_555 ? 34 AC6 4 DG B 3 ? DG B 3 . ? 1_555 ? 35 AC6 4 HOH J . ? HOH B 203 . ? 1_555 ? 36 AC6 4 HOH J . ? HOH B 215 . ? 1_555 ? 37 AC6 4 HOH J . ? HOH B 218 . ? 1_555 ? # _database_PDB_matrix.entry_id 4R4A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4R4A _atom_sites.fract_transf_matrix[1][1] 0.038043 _atom_sites.fract_transf_matrix[1][2] -0.014942 _atom_sites.fract_transf_matrix[1][3] -0.006013 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033209 _atom_sites.fract_transf_matrix[2][3] -0.014651 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034093 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 101 2 CO CO A . D 2 CO 1 102 3 CO CO A . E 2 CO 1 103 5 CO CO A . F 3 SPM 1 101 1 SPM SPM B . G 2 CO 1 102 1 CO CO B . H 2 CO 1 103 4 CO CO B . I 4 HOH 1 201 1 HOH HOH A . I 4 HOH 2 202 2 HOH HOH A . I 4 HOH 3 203 3 HOH HOH A . I 4 HOH 4 204 4 HOH HOH A . I 4 HOH 5 205 5 HOH HOH A . I 4 HOH 6 206 6 HOH HOH A . I 4 HOH 7 207 7 HOH HOH A . I 4 HOH 8 208 8 HOH HOH A . I 4 HOH 9 209 10 HOH HOH A . I 4 HOH 10 210 12 HOH HOH A . I 4 HOH 11 211 18 HOH HOH A . I 4 HOH 12 212 21 HOH HOH A . I 4 HOH 13 213 25 HOH HOH A . I 4 HOH 14 214 27 HOH HOH A . I 4 HOH 15 215 28 HOH HOH A . I 4 HOH 16 216 29 HOH HOH A . I 4 HOH 17 217 30 HOH HOH A . I 4 HOH 18 218 34 HOH HOH A . I 4 HOH 19 219 39 HOH HOH A . I 4 HOH 20 220 43 HOH HOH A . I 4 HOH 21 221 45 HOH HOH A . I 4 HOH 22 222 46 HOH HOH A . I 4 HOH 23 223 50 HOH HOH A . I 4 HOH 24 224 55 HOH HOH A . I 4 HOH 25 225 56 HOH HOH A . I 4 HOH 26 226 57 HOH HOH A . I 4 HOH 27 227 60 HOH HOH A . I 4 HOH 28 228 62 HOH HOH A . I 4 HOH 29 229 65 HOH HOH A . I 4 HOH 30 230 67 HOH HOH A . I 4 HOH 31 231 69 HOH HOH A . I 4 HOH 32 232 70 HOH HOH A . I 4 HOH 33 233 71 HOH HOH A . I 4 HOH 34 234 72 HOH HOH A . I 4 HOH 35 235 73 HOH HOH A . I 4 HOH 36 236 75 HOH HOH A . I 4 HOH 37 237 76 HOH HOH A . I 4 HOH 38 238 77 HOH HOH A . I 4 HOH 39 239 80 HOH HOH A . I 4 HOH 40 240 82 HOH HOH A . I 4 HOH 41 241 83 HOH HOH A . I 4 HOH 42 242 84 HOH HOH A . I 4 HOH 43 243 86 HOH HOH A . I 4 HOH 44 244 89 HOH HOH A . I 4 HOH 45 245 94 HOH HOH A . I 4 HOH 46 246 97 HOH HOH A . I 4 HOH 47 247 99 HOH HOH A . I 4 HOH 48 248 101 HOH HOH A . I 4 HOH 49 249 102 HOH HOH A . I 4 HOH 50 250 103 HOH HOH A . I 4 HOH 51 251 105 HOH HOH A . I 4 HOH 52 252 106 HOH HOH A . J 4 HOH 1 201 9 HOH HOH B . J 4 HOH 2 202 11 HOH HOH B . J 4 HOH 3 203 13 HOH HOH B . J 4 HOH 4 204 14 HOH HOH B . J 4 HOH 5 205 15 HOH HOH B . J 4 HOH 6 206 16 HOH HOH B . J 4 HOH 7 207 17 HOH HOH B . J 4 HOH 8 208 19 HOH HOH B . J 4 HOH 9 209 20 HOH HOH B . J 4 HOH 10 210 22 HOH HOH B . J 4 HOH 11 211 23 HOH HOH B . J 4 HOH 12 212 24 HOH HOH B . J 4 HOH 13 213 26 HOH HOH B . J 4 HOH 14 214 31 HOH HOH B . J 4 HOH 15 215 32 HOH HOH B . J 4 HOH 16 216 33 HOH HOH B . J 4 HOH 17 217 35 HOH HOH B . J 4 HOH 18 218 36 HOH HOH B . J 4 HOH 19 219 37 HOH HOH B . J 4 HOH 20 220 38 HOH HOH B . J 4 HOH 21 221 40 HOH HOH B . J 4 HOH 22 222 41 HOH HOH B . J 4 HOH 23 223 42 HOH HOH B . J 4 HOH 24 224 44 HOH HOH B . J 4 HOH 25 225 47 HOH HOH B . J 4 HOH 26 226 48 HOH HOH B . J 4 HOH 27 227 49 HOH HOH B . J 4 HOH 28 228 51 HOH HOH B . J 4 HOH 29 229 52 HOH HOH B . J 4 HOH 30 230 53 HOH HOH B . J 4 HOH 31 231 54 HOH HOH B . J 4 HOH 32 232 58 HOH HOH B . J 4 HOH 33 233 59 HOH HOH B . J 4 HOH 34 234 61 HOH HOH B . J 4 HOH 35 235 63 HOH HOH B . J 4 HOH 36 236 64 HOH HOH B . J 4 HOH 37 237 66 HOH HOH B . J 4 HOH 38 238 68 HOH HOH B . J 4 HOH 39 239 74 HOH HOH B . J 4 HOH 40 240 78 HOH HOH B . J 4 HOH 41 241 79 HOH HOH B . J 4 HOH 42 242 81 HOH HOH B . J 4 HOH 43 243 85 HOH HOH B . J 4 HOH 44 244 87 HOH HOH B . J 4 HOH 45 245 88 HOH HOH B . J 4 HOH 46 246 90 HOH HOH B . J 4 HOH 47 247 91 HOH HOH B . J 4 HOH 48 248 92 HOH HOH B . J 4 HOH 49 249 93 HOH HOH B . J 4 HOH 50 250 95 HOH HOH B . J 4 HOH 51 251 96 HOH HOH B . J 4 HOH 52 252 98 HOH HOH B . J 4 HOH 53 253 100 HOH HOH B . J 4 HOH 54 254 104 HOH HOH B . J 4 HOH 55 255 107 HOH HOH B . J 4 HOH 56 256 108 HOH HOH B . J 4 HOH 57 257 109 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? A DG 3 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 201 ? 1_555 90.6 ? 2 N7 ? A DG 3 ? A DG 3 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 91.6 ? 3 O ? I HOH . ? A HOH 201 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 177.5 ? 4 N7 ? A DG 3 ? A DG 3 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 93.4 ? 5 O ? I HOH . ? A HOH 201 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 90.7 ? 6 O ? I HOH . ? A HOH 202 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 87.8 ? 7 N7 ? A DG 3 ? A DG 3 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 90.8 ? 8 O ? I HOH . ? A HOH 201 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 94.0 ? 9 O ? I HOH . ? A HOH 202 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 87.3 ? 10 O ? I HOH . ? A HOH 204 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 173.7 ? 11 N7 ? A DG 3 ? A DG 3 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 177.8 ? 12 O ? I HOH . ? A HOH 201 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 88.4 ? 13 O ? I HOH . ? A HOH 202 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 89.5 ? 14 O ? I HOH . ? A HOH 204 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 88.6 ? 15 O ? I HOH . ? A HOH 208 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 87.4 ? 16 N7 ? A DG 9 ? A DG 9 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 86.6 ? 17 N7 ? A DG 9 ? A DG 9 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 90.2 ? 18 O6 ? A DG 10 ? A DG 10 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 89.8 ? 19 N7 ? A DG 9 ? A DG 9 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 94.4 ? 20 O6 ? A DG 10 ? A DG 10 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 91.7 ? 21 O ? I HOH . ? A HOH 203 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 175.2 ? 22 N7 ? A DG 9 ? A DG 9 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 94.6 ? 23 O6 ? A DG 10 ? A DG 10 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 178.6 ? 24 O ? I HOH . ? A HOH 203 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 90.8 ? 25 O ? I HOH . ? A HOH 207 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 87.6 ? 26 O ? I HOH . ? A HOH 216 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 80.5 ? 27 O ? I HOH . ? A HOH 216 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? I HOH . ? A HOH 248 ? 1_555 88.8 ? 28 O ? I HOH . ? A HOH 220 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? I HOH . ? A HOH 248 ? 1_555 89.5 ? 29 O ? I HOH . ? A HOH 216 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 92.6 ? 30 O ? I HOH . ? A HOH 220 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 88.7 ? 31 O ? I HOH . ? A HOH 248 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 177.4 ? 32 O ? I HOH . ? A HOH 216 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 178.7 ? 33 O ? I HOH . ? A HOH 220 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 98.5 ? 34 O ? I HOH . ? A HOH 248 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 90.5 ? 35 O ? J HOH . ? B HOH 207 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 88.1 ? 36 O ? I HOH . ? A HOH 216 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 230 ? 1_555 94.8 ? 37 O ? I HOH . ? A HOH 220 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 230 ? 1_555 172.9 ? 38 O ? I HOH . ? A HOH 248 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 230 ? 1_555 95.8 ? 39 O ? J HOH . ? B HOH 207 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 230 ? 1_555 86.2 ? 40 O ? J HOH . ? B HOH 220 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? J HOH . ? B HOH 230 ? 1_555 86.3 ? 41 N7 ? B DG 3 ? B DG 3 ? 1_555 CO ? H CO . ? B CO 103 ? 1_555 O ? J HOH . ? B HOH 203 ? 1_555 92.2 ? 42 N7 ? B DG 3 ? B DG 3 ? 1_555 CO ? H CO . ? B CO 103 ? 1_555 O ? J HOH . ? B HOH 215 ? 1_555 90.1 ? 43 O ? J HOH . ? B HOH 203 ? 1_555 CO ? H CO . ? B CO 103 ? 1_555 O ? J HOH . ? B HOH 215 ? 1_555 176.1 ? 44 N7 ? B DG 3 ? B DG 3 ? 1_555 CO ? H CO . ? B CO 103 ? 1_555 O ? J HOH . ? B HOH 218 ? 1_555 90.3 ? 45 O ? J HOH . ? B HOH 203 ? 1_555 CO ? H CO . ? B CO 103 ? 1_555 O ? J HOH . ? B HOH 218 ? 1_555 89.8 ? 46 O ? J HOH . ? B HOH 215 ? 1_555 CO ? H CO . ? B CO 103 ? 1_555 O ? J HOH . ? B HOH 218 ? 1_555 87.1 ? 47 N7 ? B DG 9 ? B DG 9 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 202 ? 1_555 93.8 ? 48 N7 ? B DG 9 ? B DG 9 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 1_555 93.8 ? 49 O ? J HOH . ? B HOH 202 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 1_555 87.7 ? 50 N7 ? B DG 9 ? B DG 9 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 210 ? 1_555 174.5 ? 51 O ? J HOH . ? B HOH 202 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 210 ? 1_555 88.2 ? 52 O ? J HOH . ? B HOH 209 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 210 ? 1_555 91.4 ? 53 N7 ? B DG 9 ? B DG 9 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 211 ? 1_555 87.4 ? 54 O ? J HOH . ? B HOH 202 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 211 ? 1_555 95.1 ? 55 O ? J HOH . ? B HOH 209 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 211 ? 1_555 176.9 ? 56 O ? J HOH . ? B HOH 210 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 211 ? 1_555 87.3 ? 57 N7 ? B DG 9 ? B DG 9 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 213 ? 1_555 90.6 ? 58 O ? J HOH . ? B HOH 202 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 213 ? 1_555 174.5 ? 59 O ? J HOH . ? B HOH 209 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 213 ? 1_555 88.7 ? 60 O ? J HOH . ? B HOH 210 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 213 ? 1_555 87.7 ? 61 O ? J HOH . ? B HOH 211 ? 1_555 CO ? G CO . ? B CO 102 ? 1_555 O ? J HOH . ? B HOH 213 ? 1_555 88.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-12 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 XDS 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 SPM N1 N N N 148 SPM C2 C N N 149 SPM C3 C N N 150 SPM C4 C N N 151 SPM N5 N N N 152 SPM C6 C N N 153 SPM C7 C N N 154 SPM C8 C N N 155 SPM C9 C N N 156 SPM N10 N N N 157 SPM C11 C N N 158 SPM C12 C N N 159 SPM C13 C N N 160 SPM N14 N N N 161 SPM HN11 H N N 162 SPM HN12 H N N 163 SPM H21 H N N 164 SPM H22 H N N 165 SPM H31 H N N 166 SPM H32 H N N 167 SPM H41 H N N 168 SPM H42 H N N 169 SPM HN5 H N N 170 SPM H61 H N N 171 SPM H62 H N N 172 SPM H71 H N N 173 SPM H72 H N N 174 SPM H81 H N N 175 SPM H82 H N N 176 SPM H91 H N N 177 SPM H92 H N N 178 SPM HN0 H N N 179 SPM H111 H N N 180 SPM H112 H N N 181 SPM H121 H N N 182 SPM H122 H N N 183 SPM H131 H N N 184 SPM H132 H N N 185 SPM HN41 H N N 186 SPM HN42 H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 SPM N1 C2 sing N N 152 SPM N1 HN11 sing N N 153 SPM N1 HN12 sing N N 154 SPM C2 C3 sing N N 155 SPM C2 H21 sing N N 156 SPM C2 H22 sing N N 157 SPM C3 C4 sing N N 158 SPM C3 H31 sing N N 159 SPM C3 H32 sing N N 160 SPM C4 N5 sing N N 161 SPM C4 H41 sing N N 162 SPM C4 H42 sing N N 163 SPM N5 C6 sing N N 164 SPM N5 HN5 sing N N 165 SPM C6 C7 sing N N 166 SPM C6 H61 sing N N 167 SPM C6 H62 sing N N 168 SPM C7 C8 sing N N 169 SPM C7 H71 sing N N 170 SPM C7 H72 sing N N 171 SPM C8 C9 sing N N 172 SPM C8 H81 sing N N 173 SPM C8 H82 sing N N 174 SPM C9 N10 sing N N 175 SPM C9 H91 sing N N 176 SPM C9 H92 sing N N 177 SPM N10 C11 sing N N 178 SPM N10 HN0 sing N N 179 SPM C11 C12 sing N N 180 SPM C11 H111 sing N N 181 SPM C11 H112 sing N N 182 SPM C12 C13 sing N N 183 SPM C12 H121 sing N N 184 SPM C12 H122 sing N N 185 SPM C13 N14 sing N N 186 SPM C13 H131 sing N N 187 SPM C13 H132 sing N N 188 SPM N14 HN41 sing N N 189 SPM N14 HN42 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4R4A 'double helix' 4R4A 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.143 -0.148 0.132 2.571 -21.485 -2.414 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.177 -0.130 0.504 -16.554 -11.376 -1.354 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.205 -0.115 0.414 11.489 -8.754 -0.411 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.230 -0.161 0.217 7.305 -17.693 -0.431 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.051 -0.135 0.027 -5.039 -14.877 0.546 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.020 -0.125 -0.031 -7.384 -7.044 4.245 6 A_DA6:DT5_B A 6 ? B 5 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.194 -0.149 0.018 -0.474 -8.824 0.202 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.124 -0.106 0.047 -5.692 -6.296 -0.522 8 A_DC8:DG3_B A 8 ? B 3 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.230 -0.148 0.114 6.331 -14.079 -0.437 9 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.122 -0.072 0.167 12.965 -10.478 1.342 10 A_DG10:DC1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.459 -0.624 3.617 2.815 8.380 42.776 -1.720 -0.322 3.463 11.344 -3.811 43.638 1 AA_DC1DC2:DG9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.100 0.786 2.924 0.861 1.926 30.484 1.147 0.343 2.962 3.657 -1.635 30.555 2 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.474 -0.480 3.380 -4.408 7.751 34.393 -1.953 0.114 3.234 12.843 7.303 35.496 3 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 0.589 -0.414 3.531 2.867 -2.096 38.364 -0.345 -0.505 3.581 -3.182 -4.352 38.522 4 AA_DG4DT5:DA6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.174 -0.049 3.352 -0.356 5.602 34.974 -0.925 0.233 3.306 9.248 0.588 35.407 5 AA_DT5DA6:DT5DA6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DA 6 1_555 B DT 5 1_555 A DC 7 1_555 B DG 4 1_555 0.288 -0.251 3.129 -0.232 2.775 29.756 -1.036 -0.605 3.091 5.388 0.450 29.883 6 AA_DA6DC7:DG4DT5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 0.008 -0.264 3.394 2.220 6.739 35.309 -1.417 0.312 3.285 10.974 -3.615 35.992 7 AA_DC7DC8:DG3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -1.122 2.391 3.205 -2.037 2.302 34.449 3.663 1.569 3.411 3.877 3.431 34.582 8 AA_DC8DG9:DC2DG3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.902 0.736 3.115 -1.584 10.112 31.317 -0.396 -1.858 3.147 18.136 2.841 32.908 9 AA_DG9DG10:DC1DC2_BB A 9 ? B 2 ? A 10 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 SPERMINE SPM 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3R86 _pdbx_initial_refinement_model.details 'PDB ENTRY 3R86' #