data_4R6M # _entry.id 4R6M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R6M pdb_00004r6m 10.2210/pdb4r6m/pdb NDB NA3158 ? ? RCSB RCSB086964 ? ? WWPDB D_1000086964 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-02 2 'Structure model' 1 1 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.value' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R6M _pdbx_database_status.recvd_initial_deposition_date 2014-08-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, C.Y.' 1 'Yu, F.' 2 'Wang, L.H.' 3 'Zhao, Y.' 4 'Lin, T.' 5 'Fan, C.H.' 6 'He, J.H.' 7 # _citation.id primary _citation.title 'Crystal Structure of DNA Duplex Containing Two Consecutive Mercury-mediated Base Pairs' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, C.Y.' 1 ? primary 'Yu, F.' 2 ? primary 'Wang, L.H.' 3 ? primary 'Zhao, Y.' 4 ? primary 'Lin, T.' 5 ? primary 'Fan, C.H.' 6 ? primary 'He, J.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3') ; 3061.004 3 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3') ; 3011.966 3 ? ? ? ? 3 non-polymer syn 'MERCURY (II) ION' 200.590 6 ? ? ? ? 4 water nat water 18.015 12 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DC)(DT)(DT)(DC)(DG)(DC)(DG)' GGACTTCGCG A,C,E ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DT)(DT)(DG)(DT)(DC)(DC)' CGCGTTGTCC B,D,F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MERCURY (II) ION' HG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DT n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HG non-polymer . 'MERCURY (II) ION' ? 'Hg 2' 200.590 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DC 10 10 10 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DC 4 4 4 DC DC C . n C 1 5 DT 5 5 5 DT DT C . n C 1 6 DT 6 6 6 DT DT C . n C 1 7 DC 7 7 7 DC DC C . n C 1 8 DG 8 8 8 DG DG C . n C 1 9 DC 9 9 9 DC DC C . n C 1 10 DG 10 10 10 DG DG C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DG 4 4 4 DG DG D . n D 2 5 DT 5 5 5 DT DT D . n D 2 6 DT 6 6 6 DT DT D . n D 2 7 DG 7 7 7 DG DG D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DC 9 9 9 DC DC D . n D 2 10 DC 10 10 10 DC DC D . n E 1 1 DG 1 1 1 DG DG E . n E 1 2 DG 2 2 2 DG DG E . n E 1 3 DA 3 3 3 DA DA E . n E 1 4 DC 4 4 4 DC DC E . n E 1 5 DT 5 5 5 DT DT E . n E 1 6 DT 6 6 6 DT DT E . n E 1 7 DC 7 7 7 DC DC E . n E 1 8 DG 8 8 8 DG DG E . n E 1 9 DC 9 9 9 DC DC E . n E 1 10 DG 10 10 10 DG DG E . n F 2 1 DC 1 1 1 DC DC F . n F 2 2 DG 2 2 2 DG DG F . n F 2 3 DC 3 3 3 DC DC F . n F 2 4 DG 4 4 4 DG DG F . n F 2 5 DT 5 5 5 DT DT F . n F 2 6 DT 6 6 6 DT DT F . n F 2 7 DG 7 7 7 DG DG F . n F 2 8 DT 8 8 8 DT DT F . n F 2 9 DC 9 9 9 DC DC F . n F 2 10 DC 10 10 10 DC DC F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HG 1 101 1 HG HG B . H 3 HG 1 102 2 HG HG B . I 3 HG 1 101 3 HG HG D . J 3 HG 1 102 4 HG HG D . K 3 HG 1 101 6 HG HG E . L 3 HG 1 101 5 HG HG F . M 4 HOH 1 101 3 HOH HOH A . M 4 HOH 2 102 7 HOH HOH A . M 4 HOH 3 103 8 HOH HOH A . M 4 HOH 4 104 12 HOH HOH A . N 4 HOH 1 201 1 HOH HOH B . N 4 HOH 2 202 6 HOH HOH B . O 4 HOH 1 101 5 HOH HOH C . O 4 HOH 2 102 9 HOH HOH C . P 4 HOH 1 201 4 HOH HOH E . Q 4 HOH 1 201 2 HOH HOH F . Q 4 HOH 2 202 10 HOH HOH F . Q 4 HOH 3 203 11 HOH HOH F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 B DC 1 ? P ? B DC 1 P 2 1 Y 0 B DC 1 ? OP1 ? B DC 1 OP1 3 1 Y 0 B DC 1 ? OP2 ? B DC 1 OP2 4 1 Y 0 C DG 1 ? P ? C DG 1 P 5 1 Y 0 C DG 1 ? OP1 ? C DG 1 OP1 6 1 Y 0 C DG 1 ? OP2 ? C DG 1 OP2 7 1 Y 0 C DG 1 ? "O5'" ? C DG 1 "O5'" 8 1 Y 0 D DC 1 ? P ? D DC 1 P 9 1 Y 0 D DC 1 ? OP1 ? D DC 1 OP1 10 1 Y 0 D DC 1 ? OP2 ? D DC 1 OP2 11 1 Y 0 D DC 1 ? "O5'" ? D DC 1 "O5'" 12 1 Y 0 D DC 1 ? "C5'" ? D DC 1 "C5'" 13 1 Y 0 E DG 1 ? P ? E DG 1 P 14 1 Y 0 E DG 1 ? OP1 ? E DG 1 OP1 15 1 Y 0 E DG 1 ? OP2 ? E DG 1 OP2 16 1 Y 0 F DC 1 ? P ? F DC 1 P 17 1 Y 0 F DC 1 ? OP1 ? F DC 1 OP1 18 1 Y 0 F DC 1 ? OP2 ? F DC 1 OP2 19 1 Y 0 F DC 1 ? "O5'" ? F DC 1 "O5'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.4_1496)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4R6M _cell.length_a 70.785 _cell.length_b 70.785 _cell.length_c 108.037 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 27 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R6M _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4R6M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.98 _exptl_crystal.description 'the entry contains Friedel pairs in F_Plus/Minus columns' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.75 _exptl_crystal_grow.pdbx_details ;0.08 M Potassium Chloride, 0.02 M Magnesium Chloride, 0.012 M Spermine Tetrahydrochloride, 40% 2-methyl-2,4-pentanediol, 0.04 M Sodium cacodylate trihydrate, pH 6.75, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2014-01-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00928 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00928 # _reflns.entry_id 4R6M _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 36.01 _reflns.d_resolution_high 2.357 _reflns.number_obs 16444 _reflns.number_all ? _reflns.percent_possible_obs 97.64 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.093 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4R6M _refine.ls_number_reflns_obs 16263 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 1.96 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.658 _refine.ls_d_res_high 2.357 _refine.ls_percent_reflns_obs 97.64 _refine.ls_R_factor_obs 0.2167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2155 _refine.ls_R_factor_R_free 0.2405 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.64 _refine.ls_number_reflns_R_free 754 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 76.8600 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'the entry contains Friedel pairs in F_Plus/Minus columns' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.overall_FOM_work_R_set 0.7285 _refine.B_iso_max 141.780 _refine.B_iso_min 35.480 _refine.pdbx_overall_phase_error 33.5400 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1224 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1242 _refine_hist.d_res_high 2.357 _refine_hist.d_res_low 26.658 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1362 0.004 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2088 0.585 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 240 0.024 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 60 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 582 33.411 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.3574 2.5392 5 91.0000 2842 . 0.3446 0.3848 . 170 . 3012 . 'X-RAY DIFFRACTION' . 2.5392 2.7945 5 100.0000 3176 . 0.2957 0.3227 . 130 . 3306 . 'X-RAY DIFFRACTION' . 2.7945 3.1983 5 100.0000 3202 . 0.2549 0.3225 . 158 . 3360 . 'X-RAY DIFFRACTION' . 3.1983 4.0273 5 100.0000 3150 . 0.2165 0.2465 . 154 . 3304 . 'X-RAY DIFFRACTION' . 4.0273 26.6600 5 98.0000 3139 . 0.1791 0.1883 . 142 . 3281 . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 4R6M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4R6M _struct.title 'Crystal Structure of DNA Duplex Containing Two Consecutive Mercury-mediated Base Pairs' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R6M _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B Double Helix, metallo DNA duplex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4R6M 4R6M 1 ? ? ? 2 PDB 4R6M 4R6M 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R6M A 1 ? 10 ? 4R6M 1 ? 10 ? 1 10 2 1 4R6M C 1 ? 10 ? 4R6M 1 ? 10 ? 1 10 3 1 4R6M E 1 ? 10 ? 4R6M 1 ? 10 ? 1 10 4 2 4R6M B 1 ? 10 ? 4R6M 1 ? 10 ? 1 10 5 2 4R6M D 1 ? 10 ? 4R6M 1 ? 10 ? 1 10 6 2 4R6M F 1 ? 10 ? 4R6M 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1190 ? 1 MORE -65 ? 1 'SSA (A^2)' 3980 ? 2 'ABSA (A^2)' 1300 ? 2 MORE -65 ? 2 'SSA (A^2)' 3880 ? 3 'ABSA (A^2)' 1200 ? 3 MORE -69 ? 3 'SSA (A^2)' 4010 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,M,N 2 1 C,D,I,J,O 3 1 E,F,K,L,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 5 N3 ? ? ? 1_555 G HG . HG ? ? A DT 5 B HG 101 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc2 metalc ? ? A DT 5 O2 ? ? ? 1_555 G HG . HG ? ? A DT 5 B HG 101 1_555 ? ? ? ? ? ? ? 2.778 ? ? metalc3 metalc ? ? A DT 6 N3 ? ? ? 1_555 H HG . HG ? ? A DT 6 B HG 102 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc4 metalc ? ? A DT 6 O4 ? ? ? 1_555 H HG . HG ? ? A DT 6 B HG 102 1_555 ? ? ? ? ? ? ? 2.825 ? ? metalc5 metalc ? ? B DG 4 O6 ? ? ? 1_555 H HG . HG ? ? B DG 4 B HG 102 1_555 ? ? ? ? ? ? ? 3.131 ? ? metalc6 metalc ? ? B DT 5 N3 ? ? ? 1_555 H HG . HG ? ? B DT 5 B HG 102 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc7 metalc ? ? B DT 5 O2 ? ? ? 1_555 H HG . HG ? ? B DT 5 B HG 102 1_555 ? ? ? ? ? ? ? 2.753 ? ? metalc8 metalc ? ? B DT 6 N3 ? ? ? 1_555 G HG . HG ? ? B DT 6 B HG 101 1_555 ? ? ? ? ? ? ? 2.206 ? ? metalc9 metalc ? ? B DT 6 O2 ? ? ? 1_555 G HG . HG ? ? B DT 6 B HG 101 1_555 ? ? ? ? ? ? ? 2.957 ? ? metalc10 metalc ? ? B DT 6 O2 ? ? ? 1_555 H HG . HG ? ? B DT 6 B HG 102 1_555 ? ? ? ? ? ? ? 2.898 ? ? metalc11 metalc ? ? B DG 7 O6 ? ? ? 1_555 G HG . HG ? ? B DG 7 B HG 101 1_555 ? ? ? ? ? ? ? 3.058 ? ? metalc12 metalc ? ? C DT 5 N3 ? ? ? 1_555 J HG . HG ? ? C DT 5 D HG 102 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc13 metalc ? ? C DT 5 O2 ? ? ? 1_555 J HG . HG ? ? C DT 5 D HG 102 1_555 ? ? ? ? ? ? ? 3.087 ? ? metalc14 metalc ? ? C DT 5 O4 ? ? ? 1_555 J HG . HG ? ? C DT 5 D HG 102 1_555 ? ? ? ? ? ? ? 3.120 ? ? metalc15 metalc ? ? C DT 6 N3 ? ? ? 1_555 I HG . HG ? ? C DT 6 D HG 101 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc16 metalc ? ? C DT 6 O4 ? ? ? 1_555 I HG . HG ? ? C DT 6 D HG 101 1_555 ? ? ? ? ? ? ? 2.502 ? ? metalc17 metalc ? ? D DG 4 O6 ? ? ? 1_555 I HG . HG ? ? D DG 4 D HG 101 1_555 ? ? ? ? ? ? ? 3.200 ? ? metalc18 metalc ? ? D DT 5 N3 ? ? ? 1_555 I HG . HG ? ? D DT 5 D HG 101 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc19 metalc ? ? D DT 5 O4 ? ? ? 1_555 I HG . HG ? ? D DT 5 D HG 101 1_555 ? ? ? ? ? ? ? 3.140 ? ? metalc20 metalc ? ? D DT 6 O2 ? ? ? 1_555 I HG . HG ? ? D DT 6 D HG 101 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc21 metalc ? ? D DT 6 N3 ? ? ? 1_555 J HG . HG ? ? D DT 6 D HG 102 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc22 metalc ? ? D DT 6 O4 ? ? ? 1_555 J HG . HG ? ? D DT 6 D HG 102 1_555 ? ? ? ? ? ? ? 3.089 ? ? metalc23 metalc ? ? D DT 6 O2 ? ? ? 1_555 J HG . HG ? ? D DT 6 D HG 102 1_555 ? ? ? ? ? ? ? 3.181 ? ? metalc24 metalc ? ? D DG 7 O6 ? ? ? 1_555 J HG . HG ? ? D DG 7 D HG 102 1_555 ? ? ? ? ? ? ? 3.123 ? ? metalc25 metalc ? ? E DT 5 N3 ? ? ? 1_555 K HG . HG ? ? E DT 5 E HG 101 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc26 metalc ? ? E DT 5 O4 ? ? ? 1_555 K HG . HG ? ? E DT 5 E HG 101 1_555 ? ? ? ? ? ? ? 3.002 ? ? metalc27 metalc ? ? E DT 6 N3 ? ? ? 1_555 L HG . HG ? ? E DT 6 F HG 101 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc28 metalc ? ? E DT 6 O4 ? ? ? 1_555 L HG . HG ? ? E DT 6 F HG 101 1_555 ? ? ? ? ? ? ? 2.908 ? ? metalc29 metalc ? ? K HG . HG ? ? ? 1_555 P HOH . O ? ? E HG 101 E HOH 201 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc30 metalc ? ? K HG . HG ? ? ? 1_555 F DT 6 O2 ? ? E HG 101 F DT 6 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc31 metalc ? ? K HG . HG ? ? ? 1_555 F DT 6 N3 ? ? E HG 101 F DT 6 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc32 metalc ? ? K HG . HG ? ? ? 1_555 Q HOH . O ? ? E HG 101 F HOH 201 1_555 ? ? ? ? ? ? ? 3.129 ? ? metalc33 metalc ? ? F DG 4 O6 ? ? ? 1_555 L HG . HG ? ? F DG 4 F HG 101 1_555 ? ? ? ? ? ? ? 3.077 ? ? metalc34 metalc ? ? F DT 5 N3 ? ? ? 1_555 L HG . HG ? ? F DT 5 F HG 101 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc35 metalc ? ? F DT 5 O2 ? ? ? 1_555 L HG . HG ? ? F DT 5 F HG 101 1_555 ? ? ? ? ? ? ? 2.796 ? ? metalc36 metalc ? ? L HG . HG ? ? ? 1_555 Q HOH . O ? ? F HG 101 F HOH 201 1_555 ? ? ? ? ? ? ? 2.357 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O2 ? ? ? 1_555 F DC 1 N4 ? ? A DT 5 F DC 1 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 8 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 8 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 8 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DT 5 O2 ? ? B DC 1 C DT 5 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog23 hydrog ? ? B DC 1 N4 ? ? ? 1_555 D DT 6 O2 ? ? B DC 1 D DT 6 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog24 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 1 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 1 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 1 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 2 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 2 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 2 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 4 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 4 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 4 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 8 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 8 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 8 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog42 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 10 N3 ? ? E DG 1 F DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 10 O2 ? ? E DG 1 F DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 10 N4 ? ? E DG 1 F DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 9 N3 ? ? E DG 2 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 9 O2 ? ? E DG 2 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 9 N4 ? ? E DG 2 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DC 4 N3 ? ? ? 1_555 F DG 7 N1 ? ? E DC 4 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DC 4 N4 ? ? ? 1_555 F DG 7 O6 ? ? E DC 4 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DC 4 O2 ? ? ? 1_555 F DG 7 N2 ? ? E DC 4 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 4 N1 ? ? E DC 7 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 4 O6 ? ? E DC 7 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 4 N2 ? ? E DC 7 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DG 8 N1 ? ? ? 1_555 F DC 3 N3 ? ? E DG 8 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DG 8 N2 ? ? ? 1_555 F DC 3 O2 ? ? E DG 8 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DG 8 O6 ? ? ? 1_555 F DC 3 N4 ? ? E DG 8 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DC 9 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 9 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DC 9 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 9 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DC 9 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 9 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O2 ? A DT 5 ? A DT 5 ? 1_555 52.4 ? 2 N3 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 N3 ? B DT 6 ? B DT 6 ? 1_555 171.6 ? 3 O2 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 N3 ? B DT 6 ? B DT 6 ? 1_555 119.5 ? 4 N3 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 126.9 ? 5 O2 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 84.9 ? 6 N3 ? B DT 6 ? B DT 6 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 49.4 ? 7 N3 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 99.4 ? 8 O2 ? A DT 5 ? A DT 5 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 77.5 ? 9 N3 ? B DT 6 ? B DT 6 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 75.2 ? 10 O2 ? B DT 6 ? B DT 6 ? 1_555 HG ? G HG . ? B HG 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 100.0 ? 11 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O4 ? A DT 6 ? A DT 6 ? 1_555 52.5 ? 12 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 95.6 ? 13 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 61.8 ? 14 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 N3 ? B DT 5 ? B DT 5 ? 1_555 171.8 ? 15 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 N3 ? B DT 5 ? B DT 5 ? 1_555 119.4 ? 16 O6 ? B DG 4 ? B DG 4 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 N3 ? B DT 5 ? B DT 5 ? 1_555 77.9 ? 17 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 134.6 ? 18 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 159.9 ? 19 O6 ? B DG 4 ? B DG 4 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 98.2 ? 20 N3 ? B DT 5 ? B DT 5 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 52.3 ? 21 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 95.5 ? 22 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 115.4 ? 23 O6 ? B DG 4 ? B DG 4 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 161.9 ? 24 N3 ? B DT 5 ? B DT 5 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 89.6 ? 25 O2 ? B DT 5 ? B DT 5 ? 1_555 HG ? H HG . ? B HG 102 ? 1_555 O2 ? B DT 6 ? B DT 6 ? 1_555 84.0 ? 26 N3 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O2 ? C DT 5 ? C DT 5 ? 1_555 47.1 ? 27 N3 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O4 ? C DT 5 ? C DT 5 ? 1_555 47.0 ? 28 O2 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O4 ? C DT 5 ? C DT 5 ? 1_555 94.1 ? 29 N3 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 N3 ? D DT 6 ? D DT 6 ? 1_555 158.9 ? 30 O2 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 N3 ? D DT 6 ? D DT 6 ? 1_555 113.0 ? 31 O4 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 N3 ? D DT 6 ? D DT 6 ? 1_555 151.7 ? 32 N3 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O4 ? D DT 6 ? D DT 6 ? 1_555 148.3 ? 33 O2 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O4 ? D DT 6 ? D DT 6 ? 1_555 134.1 ? 34 O4 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O4 ? D DT 6 ? D DT 6 ? 1_555 117.7 ? 35 N3 ? D DT 6 ? D DT 6 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O4 ? D DT 6 ? D DT 6 ? 1_555 47.6 ? 36 N3 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 116.3 ? 37 O2 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 81.8 ? 38 O4 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 137.9 ? 39 N3 ? D DT 6 ? D DT 6 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 45.3 ? 40 O4 ? D DT 6 ? D DT 6 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 92.9 ? 41 N3 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 97.5 ? 42 O2 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 74.9 ? 43 O4 ? C DT 5 ? C DT 5 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 116.2 ? 44 N3 ? D DT 6 ? D DT 6 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 80.4 ? 45 O4 ? D DT 6 ? D DT 6 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 62.0 ? 46 O2 ? D DT 6 ? D DT 6 ? 1_555 HG ? J HG . ? D HG 102 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 103.1 ? 47 N3 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O4 ? C DT 6 ? C DT 6 ? 1_555 58.1 ? 48 N3 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 105.2 ? 49 O4 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 73.8 ? 50 N3 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 N3 ? D DT 5 ? D DT 5 ? 1_555 162.4 ? 51 O4 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 N3 ? D DT 5 ? D DT 5 ? 1_555 137.6 ? 52 O6 ? D DG 4 ? D DG 4 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 N3 ? D DT 5 ? D DT 5 ? 1_555 77.7 ? 53 N3 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O4 ? D DT 5 ? D DT 5 ? 1_555 151.0 ? 54 O4 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O4 ? D DT 5 ? D DT 5 ? 1_555 93.9 ? 55 O6 ? D DG 4 ? D DG 4 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O4 ? D DT 5 ? D DT 5 ? 1_555 70.3 ? 56 N3 ? D DT 5 ? D DT 5 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O4 ? D DT 5 ? D DT 5 ? 1_555 46.5 ? 57 N3 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 86.8 ? 58 O4 ? C DT 6 ? C DT 6 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 125.3 ? 59 O6 ? D DG 4 ? D DG 4 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 160.8 ? 60 N3 ? D DT 5 ? D DT 5 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 86.5 ? 61 O4 ? D DT 5 ? D DT 5 ? 1_555 HG ? I HG . ? D HG 101 ? 1_555 O2 ? D DT 6 ? D DT 6 ? 1_555 106.4 ? 62 N3 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O4 ? E DT 5 ? E DT 5 ? 1_555 48.9 ? 63 N3 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? P HOH . ? E HOH 201 ? 1_555 91.1 ? 64 O4 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? P HOH . ? E HOH 201 ? 1_555 52.5 ? 65 N3 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O2 ? F DT 6 ? F DT 6 ? 1_555 134.5 ? 66 O4 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O2 ? F DT 6 ? F DT 6 ? 1_555 162.0 ? 67 O ? P HOH . ? E HOH 201 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O2 ? F DT 6 ? F DT 6 ? 1_555 133.5 ? 68 N3 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 N3 ? F DT 6 ? F DT 6 ? 1_555 163.0 ? 69 O4 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 N3 ? F DT 6 ? F DT 6 ? 1_555 123.8 ? 70 O ? P HOH . ? E HOH 201 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 N3 ? F DT 6 ? F DT 6 ? 1_555 75.3 ? 71 O2 ? F DT 6 ? F DT 6 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 N3 ? F DT 6 ? F DT 6 ? 1_555 58.2 ? 72 N3 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 83.5 ? 73 O4 ? E DT 5 ? E DT 5 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 50.6 ? 74 O ? P HOH . ? E HOH 201 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 76.2 ? 75 O2 ? F DT 6 ? F DT 6 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 111.8 ? 76 N3 ? F DT 6 ? F DT 6 ? 1_555 HG ? K HG . ? E HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 102.7 ? 77 N3 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O4 ? E DT 6 ? E DT 6 ? 1_555 50.4 ? 78 N3 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O6 ? F DG 4 ? F DG 4 ? 1_555 98.1 ? 79 O4 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O6 ? F DG 4 ? F DG 4 ? 1_555 67.4 ? 80 N3 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 N3 ? F DT 5 ? F DT 5 ? 1_555 175.5 ? 81 O4 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 N3 ? F DT 5 ? F DT 5 ? 1_555 127.3 ? 82 O6 ? F DG 4 ? F DG 4 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 N3 ? F DT 5 ? F DT 5 ? 1_555 83.6 ? 83 N3 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O2 ? F DT 5 ? F DT 5 ? 1_555 131.6 ? 84 O4 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O2 ? F DT 5 ? F DT 5 ? 1_555 166.8 ? 85 O6 ? F DG 4 ? F DG 4 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O2 ? F DT 5 ? F DT 5 ? 1_555 100.0 ? 86 N3 ? F DT 5 ? F DT 5 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O2 ? F DT 5 ? F DT 5 ? 1_555 51.8 ? 87 N3 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 99.9 ? 88 O4 ? E DT 6 ? E DT 6 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 50.4 ? 89 O6 ? F DG 4 ? F DG 4 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 60.9 ? 90 N3 ? F DT 5 ? F DT 5 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 77.2 ? 91 O2 ? F DT 5 ? F DT 5 ? 1_555 HG ? L HG . ? F HG 101 ? 1_555 O ? Q HOH . ? F HOH 201 ? 1_555 128.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B HG 101 ? 5 'BINDING SITE FOR RESIDUE HG B 101' AC2 Software B HG 102 ? 5 'BINDING SITE FOR RESIDUE HG B 102' AC3 Software D HG 101 ? 6 'BINDING SITE FOR RESIDUE HG D 101' AC4 Software D HG 102 ? 6 'BINDING SITE FOR RESIDUE HG D 102' AC5 Software E HG 101 ? 5 'BINDING SITE FOR RESIDUE HG E 101' AC6 Software F HG 101 ? 6 'BINDING SITE FOR RESIDUE HG F 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DT A 5 ? DT A 5 . ? 1_555 ? 2 AC1 5 DT B 5 ? DT B 5 . ? 1_555 ? 3 AC1 5 DT B 6 ? DT B 6 . ? 1_555 ? 4 AC1 5 DG B 7 ? DG B 7 . ? 1_555 ? 5 AC1 5 HG H . ? HG B 102 . ? 1_555 ? 6 AC2 5 DT A 6 ? DT A 6 . ? 1_555 ? 7 AC2 5 DG B 4 ? DG B 4 . ? 1_555 ? 8 AC2 5 DT B 5 ? DT B 5 . ? 1_555 ? 9 AC2 5 DT B 6 ? DT B 6 . ? 1_555 ? 10 AC2 5 HG G . ? HG B 101 . ? 1_555 ? 11 AC3 6 DT C 6 ? DT C 6 . ? 1_555 ? 12 AC3 6 DC C 7 ? DC C 7 . ? 1_555 ? 13 AC3 6 DG D 4 ? DG D 4 . ? 1_555 ? 14 AC3 6 DT D 5 ? DT D 5 . ? 1_555 ? 15 AC3 6 DT D 6 ? DT D 6 . ? 1_555 ? 16 AC3 6 HG J . ? HG D 102 . ? 1_555 ? 17 AC4 6 DC C 4 ? DC C 4 . ? 1_555 ? 18 AC4 6 DT C 5 ? DT C 5 . ? 1_555 ? 19 AC4 6 DT D 5 ? DT D 5 . ? 1_555 ? 20 AC4 6 DT D 6 ? DT D 6 . ? 1_555 ? 21 AC4 6 DG D 7 ? DG D 7 . ? 1_555 ? 22 AC4 6 HG I . ? HG D 101 . ? 1_555 ? 23 AC5 5 DT E 5 ? DT E 5 . ? 1_555 ? 24 AC5 5 HOH P . ? HOH E 201 . ? 1_555 ? 25 AC5 5 DT F 6 ? DT F 6 . ? 1_555 ? 26 AC5 5 DG F 7 ? DG F 7 . ? 1_555 ? 27 AC5 5 HG L . ? HG F 101 . ? 1_555 ? 28 AC6 6 DT E 6 ? DT E 6 . ? 1_555 ? 29 AC6 6 HG K . ? HG E 101 . ? 1_555 ? 30 AC6 6 DG F 4 ? DG F 4 . ? 1_555 ? 31 AC6 6 DT F 5 ? DT F 5 . ? 1_555 ? 32 AC6 6 DT F 6 ? DT F 6 . ? 1_555 ? 33 AC6 6 HOH Q . ? HOH F 201 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 202 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 203 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.31 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.01 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HG HG HG N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4R6M 'double helix' 4R6M 'b-form double helix' 4R6M 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 0.032 -0.222 -0.201 -2.130 -1.475 0.688 1 A_DG1:DC10_B A 1 ? B 10 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 0.031 -0.153 0.343 3.755 -3.761 -1.255 2 A_DG2:DC9_B A 2 ? B 9 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.108 0.031 0.479 11.822 -9.832 -7.037 3 A_DA3:DT8_B A 3 ? B 8 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.723 0.015 -0.378 19.339 1.344 0.970 4 A_DC4:DG7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 F DC 1 1_555 7.526 -4.932 -0.284 38.804 -33.709 -2.181 5 A_DT5:DC1_F A 5 ? F 1 ? ? ? 1 A DC 7 1_555 B DG 4 1_555 0.025 -0.091 0.470 -7.797 -20.051 -1.262 6 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DG 8 1_555 B DC 3 1_555 0.093 -0.159 0.522 4.878 -1.611 -4.122 7 A_DG8:DC3_B A 8 ? B 3 ? 19 1 1 A DC 9 1_555 B DG 2 1_555 -0.170 -0.141 0.561 4.875 -6.656 -0.728 8 A_DC9:DG2_B A 9 ? B 2 ? 19 1 1 C DG 1 1_555 D DC 10 1_555 0.311 0.011 -0.172 -0.194 -2.498 -2.446 9 C_DG1:DC10_D C 1 ? D 10 ? 19 1 1 C DG 2 1_555 D DC 9 1_555 -0.238 0.018 0.352 2.742 -7.230 -7.981 10 C_DG2:DC9_D C 2 ? D 9 ? 19 1 1 C DA 3 1_555 D DT 8 1_555 0.236 -0.030 0.537 14.972 -4.159 -0.724 11 C_DA3:DT8_D C 3 ? D 8 ? 20 1 1 C DC 4 1_555 D DG 7 1_555 0.408 -0.041 -0.126 19.954 -3.268 -1.390 12 C_DC4:DG7_D C 4 ? D 7 ? 19 1 1 B DC 1 1_555 D DT 6 1_555 -5.582 -1.563 -0.020 -48.606 -27.913 41.084 13 B_DC1:DT6_D B 1 ? D 6 ? ? ? 1 C DC 7 1_555 D DG 4 1_555 0.943 -0.272 -0.069 -1.768 -13.867 1.301 14 C_DC7:DG4_D C 7 ? D 4 ? 19 1 1 C DG 8 1_555 D DC 3 1_555 -0.354 0.148 0.853 1.116 -18.574 -0.257 15 C_DG8:DC3_D C 8 ? D 3 ? 19 1 1 C DC 9 1_555 D DG 2 1_555 0.192 0.269 0.121 9.783 -3.537 10.304 16 C_DC9:DG2_D C 9 ? D 2 ? ? 1 1 C DG 10 1_555 D DC 1 1_555 -0.132 -0.132 0.457 9.349 -0.980 -0.672 17 C_DG10:DC1_D C 10 ? D 1 ? 19 1 1 E DG 1 1_555 F DC 10 1_555 0.358 -0.157 0.987 14.991 -1.249 0.935 18 E_DG1:DC10_F E 1 ? F 10 ? 19 1 1 E DG 2 1_555 F DC 9 1_555 -0.209 -0.135 0.277 -3.752 -3.788 -4.815 19 E_DG2:DC9_F E 2 ? F 9 ? 19 1 1 E DC 4 1_555 F DG 7 1_555 0.601 -0.463 -0.112 18.361 -1.963 3.020 20 E_DC4:DG7_F E 4 ? F 7 ? 19 1 1 E DC 7 1_555 F DG 4 1_555 -0.093 -0.396 0.506 -12.224 -14.011 -2.776 21 E_DC7:DG4_F E 7 ? F 4 ? 19 1 1 E DG 8 1_555 F DC 3 1_555 0.123 0.110 0.674 4.529 -11.423 4.443 22 E_DG8:DC3_F E 8 ? F 3 ? 19 1 1 E DC 9 1_555 F DG 2 1_555 0.209 -0.089 0.451 2.862 -6.690 0.303 23 E_DC9:DG2_F E 9 ? F 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.654 -0.585 3.125 -6.165 -0.802 33.204 -0.880 0.152 3.204 -1.388 10.671 33.765 1 AA_DG1DG2:DC9DC10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 -0.670 -0.421 3.063 -0.885 0.542 34.040 -0.800 1.013 3.072 0.925 1.512 34.056 2 AA_DG2DA3:DT8DC9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 0.976 -0.501 3.238 6.680 -1.050 32.413 -0.698 -0.561 3.381 -1.856 -11.807 33.092 3 AA_DA3DC4:DG7DT8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 F DC 1 1_555 -1.982 -0.531 3.248 -12.382 3.113 49.428 -0.848 1.388 3.578 3.652 14.529 50.950 4 AA_DC4DT5:DC1DG7_FB A 4 ? B 7 ? A 5 ? F 1 ? 1 A DC 7 1_555 B DG 4 1_555 A DG 8 1_555 B DC 3 1_555 0.340 0.475 3.104 -1.341 4.198 29.986 0.099 -0.910 3.122 8.058 2.575 30.301 5 AA_DC7DG8:DC3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DG 8 1_555 B DC 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.501 0.134 3.374 -2.986 -5.368 34.460 1.060 0.367 3.346 -8.972 4.991 34.987 6 AA_DG8DC9:DG2DC3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 C DG 1 1_555 D DC 10 1_555 C DG 2 1_555 D DC 9 1_555 -0.598 -0.702 3.165 -5.665 -1.517 32.703 -0.977 0.108 3.249 -2.668 9.961 33.211 7 CC_DG1DG2:DC9DC10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C DG 2 1_555 D DC 9 1_555 C DA 3 1_555 D DT 8 1_555 0.201 -0.426 3.000 -1.542 2.751 35.445 -1.063 -0.533 2.949 4.508 2.527 35.581 8 CC_DG2DA3:DT8DC9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C DA 3 1_555 D DT 8 1_555 C DC 4 1_555 D DG 7 1_555 0.479 -0.562 3.197 3.935 0.533 30.624 -1.158 -0.148 3.222 1.003 -7.411 30.874 9 CC_DA3DC4:DG7DT8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DC 4 1_555 D DG 7 1_555 B DC 1 1_555 D DT 6 1_555 -0.614 -3.229 3.824 -10.293 28.489 46.971 -5.056 0.088 1.819 32.151 11.616 55.423 10 CB_DC4DC1:DT6DG7_DD C 4 ? D 7 ? B 1 ? D 6 ? 1 B DC 1 1_555 D DT 6 1_555 C DC 7 1_555 D DG 4 1_555 -0.062 -1.062 5.796 4.480 -6.605 65.534 -0.499 0.380 5.853 -6.078 -4.123 65.964 11 BC_DC1DC7:DG4DT6_DD B 1 ? D 6 ? C 7 ? D 4 ? 1 C DC 7 1_555 D DG 4 1_555 C DG 8 1_555 D DC 3 1_555 -0.580 0.373 3.089 -9.230 8.867 31.843 -0.744 -0.449 3.124 15.407 16.036 34.257 12 CC_DC7DG8:DC3DG4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C DG 8 1_555 D DC 3 1_555 C DC 9 1_555 D DG 2 1_555 0.132 0.038 3.101 5.223 -2.471 34.777 0.412 0.519 3.078 -4.098 -8.664 35.239 13 CC_DG8DC9:DG2DC3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C DC 9 1_555 D DG 2 1_555 C DG 10 1_555 D DC 1 1_555 0.277 -0.175 3.381 -1.900 -2.537 30.842 0.178 -0.896 3.362 -4.755 3.562 31.001 14 CC_DC9DG10:DC1DG2_DD C 9 ? D 2 ? C 10 ? D 1 ? 1 E DG 1 1_555 F DC 10 1_555 E DG 2 1_555 F DC 9 1_555 -0.859 -0.895 3.680 1.882 6.327 33.594 -2.613 1.785 3.408 10.817 -3.218 34.218 15 EE_DG1DG2:DC9DC10_FF E 1 ? F 10 ? E 2 ? F 9 ? 1 E DG 2 1_555 F DC 9 1_555 E DC 4 1_555 F DG 7 1_555 0.864 -1.141 6.136 -2.635 5.205 62.523 -1.530 -1.049 5.997 5.004 2.533 62.767 16 EE_DG2DC4:DG7DC9_FF E 2 ? F 9 ? E 4 ? F 7 ? 1 E DC 7 1_555 F DG 4 1_555 E DG 8 1_555 F DC 3 1_555 0.332 0.454 2.927 -1.667 2.479 31.723 0.422 -0.878 2.932 4.523 3.041 31.860 17 EE_DC7DG8:DC3DG4_FF E 7 ? F 4 ? E 8 ? F 3 ? 1 E DG 8 1_555 F DC 3 1_555 E DC 9 1_555 F DG 2 1_555 -0.827 0.252 3.498 -1.814 -5.154 35.719 1.186 1.059 3.466 -8.343 2.936 36.121 18 EE_DG8DC9:DG2DC3_FF E 8 ? F 3 ? E 9 ? F 2 ? # _atom_sites.entry_id 4R6M _atom_sites.fract_transf_matrix[1][1] 0.014127 _atom_sites.fract_transf_matrix[1][2] 0.008156 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016313 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009256 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C HG N O P # loop_