HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-AUG-14 4R7F TITLE CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (PARMER_01801) FROM TITLE 2 PARABACTEROIDES MERDAE ATCC 43184 AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES MERDAE; SOURCE 3 ORGANISM_TAXID: 411477; SOURCE 4 STRAIN: ATCC 43184; SOURCE 5 GENE: PARMER_01801; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THREE DOMAINS HAVE AN IMMUNOGLOBULIN-LIKE BETA-SANDWICH FOLD, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4R7F 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4R7F 1 JRNL REVDAT 2 22-NOV-17 4R7F 1 REMARK REVDAT 1 17-DEC-14 4R7F 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (PARMER_01801) JRNL TITL 2 FROM PARABACTEROIDES MERDAE ATCC 43184 AT 2.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 31457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.426 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3447 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3095 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4710 ; 1.618 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7126 ; 0.794 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 6.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;37.317 ;25.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;14.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4096 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 870 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 4.988 ; 6.933 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1630 ; 4.943 ; 6.927 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2048 ; 6.320 ;12.966 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9494 24.4776 8.7129 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0269 REMARK 3 T33: 0.0103 T12: -0.0051 REMARK 3 T13: 0.0030 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.6944 L22: 0.1464 REMARK 3 L33: 0.4016 L12: 0.1740 REMARK 3 L13: -0.5056 L23: -0.1843 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: 0.1136 S13: -0.0159 REMARK 3 S21: 0.0212 S22: 0.0023 S23: -0.0101 REMARK 3 S31: -0.0061 S32: -0.0696 S33: 0.0106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. GLYCEROL (GOL), TRIS-BUFFER (TRS), MG REMARK 3 AND CL IONS FROM THE CRYOPROTECTANT AND FROM THE CRYSTALLIZATION REMARK 3 CONDITION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 4. ATOM REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU R REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5. THE MAD PHASES REMARK 3 WERE USED AS RESTRAINTS DURING REFINEMENT. 6. SOLVENT ATOMS WERE REMARK 3 EXCLUDED FROM TLS REFINEMENT. REMARK 4 REMARK 4 4R7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97941,0.97898 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.203 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18500 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.25600 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 2.5M SODIUM REMARK 280 CHLORIDE, 0.1M TRIS PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.48500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.28350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.28350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.72750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.28350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.28350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.24250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.28350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.28350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.72750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.28350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.28350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.24250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 420 REMARK 465 MSE A 421 REMARK 465 GLN A 422 REMARK 465 VAL A 423 REMARK 465 PHE A 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 248 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 179 -95.05 -118.31 REMARK 500 GLN A 179 -97.24 -117.75 REMARK 500 TYR A 231 65.08 -119.92 REMARK 500 ASN A 262 148.79 -175.78 REMARK 500 LYS A 282 43.15 -104.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 226 OE2 REMARK 620 2 HOH A 832 O 78.5 REMARK 620 3 HOH A 854 O 159.7 83.6 REMARK 620 4 HOH A 855 O 86.7 79.2 99.1 REMARK 620 5 HOH A 857 O 92.7 91.7 78.5 170.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 244 OE1 REMARK 620 2 ASP A 290 OD2 81.0 REMARK 620 3 ASP A 290 OD1 80.8 53.1 REMARK 620 4 ASP A 292 OD1 165.6 99.3 87.9 REMARK 620 5 GLN A 392 O 92.2 166.3 137.8 90.2 REMARK 620 6 GLN A 392 OE1 98.0 117.6 65.1 68.9 75.0 REMARK 620 7 HOH A 759 O 93.2 85.3 138.4 101.2 83.2 155.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419702 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-424 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4R7F A 23 424 UNP A7AEG3 A7AEG3_9PORP 23 424 SEQADV 4R7F GLY A 0 UNP A7AEG3 EXPRESSION TAG SEQRES 1 A 403 GLY GLN VAL LYS PHE PHE THR ASP VAL ASN SER LYS GLN SEQRES 2 A 403 ILE LYS THR LEU GLN VAL LYS VAL ALA GLY GLU LEU ILE SEQRES 3 A 403 SER GLU PRO TYR ILE ALA LEU GLY GLY GLU GLU GLN ILE SEQRES 4 A 403 GLU ILE ASN PHE ASP GLY LEU GLY SER GLY TYR THR ARG SEQRES 5 A 403 TYR ALA TYR ASN VAL VAL HIS CYS ASN ALA ASP TRP THR SEQRES 6 A 403 GLN SER GLN LEU SER PRO ILE GLU TYR MSE ASN GLY PHE SEQRES 7 A 403 GLN GLY THR THR ILE ASP ASP PHE ALA ASN SER ILE GLY SEQRES 8 A 403 THR THR THR GLN TYR SER ASN TYR ARG LEU LEU LEU PRO SEQRES 9 A 403 ASN ASP ASP VAL GLN PHE LYS VAL SER GLY ASN TYR ALA SEQRES 10 A 403 ILE GLN VAL TYR ASN GLU ASP THR PRO ASP GLN ILE ILE SEQRES 11 A 403 PHE THR ALA CYS PHE SER VAL VAL GLU PRO VAL VAL ASN SEQRES 12 A 403 ILE SER ALA SER VAL SER GLY ASN THR ASP ILE ASP THR SEQRES 13 A 403 ASN GLN SER HIS GLN GLN VAL SER PHE ASN ILE ASN ASN SEQRES 14 A 403 LYS ASN PHE PRO ILE THR TYR PRO GLN THR ASP LEU LYS SEQRES 15 A 403 ILE PHE VAL TYR GLN ASP ASN ARG ARG ASP ASN ALA VAL SEQRES 16 A 403 THR ASP LEU GLN PRO MSE SER ILE LEU GLU ASN GLN ILE SEQRES 17 A 403 SER TYR THR TYR ASN ARG ASN LEU ILE PHE PRO ALA GLY SEQRES 18 A 403 ASN GLU TYR ARG ARG MSE GLU PHE LEU SER ASN LYS TYR SEQRES 19 A 403 ASN GLY MSE HIS VAL GLU ASN ILE SER PHE HIS ASN PRO SEQRES 20 A 403 TYR TYR ASN VAL GLU LEU MSE THR ASP TYR ARG ARG ASP SEQRES 21 A 403 LYS GLY THR TYR GLN TYR ASP GLN ASP GLN ASP GLY ARG SEQRES 22 A 403 PHE PHE ILE ARG CYS SER ASP CYS ASN ASP PRO ASP THR SEQRES 23 A 403 GLU ALA ASP TYR TYR ILE VAL HIS PHE THR LEU ALA CYS SEQRES 24 A 403 ASP PRO LEU PRO ASP GLY SER VAL TYR LEU ASN GLY GLU SEQRES 25 A 403 LEU PHE ASN ASN VAL LEU ASP GLU LYS SER LYS MSE GLY SEQRES 26 A 403 TYR ASN PHE GLU THR LYS GLN TYR GLU LYS ALA VAL LEU SEQRES 27 A 403 LEU LYS GLN GLY SER TYR ASN TYR GLN TYR LEU PHE VAL SEQRES 28 A 403 PRO THR GLY SER SER VAL GLY GLN THR GLY PRO ILE GLU SEQRES 29 A 403 GLY ASN TYR TYR GLN THR GLN ASN GLU TYR SER ILE TYR SEQRES 30 A 403 VAL TYR TYR ARG PRO MSE GLY ALA ARG TYR ASP ARG LEU SEQRES 31 A 403 ILE GLY VAL THR THR VAL ARG ASN GLU MSE GLN VAL PHE MODRES 4R7F MSE A 96 MET SELENOMETHIONINE MODRES 4R7F MSE A 222 MET SELENOMETHIONINE MODRES 4R7F MSE A 248 MET SELENOMETHIONINE MODRES 4R7F MSE A 258 MET SELENOMETHIONINE MODRES 4R7F MSE A 275 MET SELENOMETHIONINE MODRES 4R7F MSE A 345 MET SELENOMETHIONINE MODRES 4R7F MSE A 404 MET SELENOMETHIONINE HET MSE A 96 13 HET MSE A 222 21 HET MSE A 248 8 HET MSE A 258 8 HET MSE A 275 8 HET MSE A 345 8 HET MSE A 404 13 HET GOL A 501 6 HET TRS A 502 8 HET TRS A 503 8 HET CL A 504 1 HET CL A 505 1 HET MG A 506 1 HET MG A 507 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 TRS 2(C4 H12 N O3 1+) FORMUL 5 CL 2(CL 1-) FORMUL 7 MG 2(MG 2+) FORMUL 9 HOH *277(H2 O) HELIX 1 1 SER A 91 TYR A 95 1 5 HELIX 2 2 TYR A 197 ASP A 201 1 5 HELIX 3 3 ASN A 234 ASN A 236 5 3 HELIX 4 4 ASP A 304 ALA A 309 1 6 HELIX 5 5 GLY A 332 ASN A 336 5 5 SHEET 1 A 3 ASP A 29 VAL A 30 0 SHEET 2 A 3 ILE A 150 VAL A 159 -1 O THR A 153 N ASP A 29 SHEET 3 A 3 TYR A 51 ALA A 53 1 N ILE A 52 O VAL A 159 SHEET 1 B 5 ASP A 29 VAL A 30 0 SHEET 2 B 5 ILE A 150 VAL A 159 -1 O THR A 153 N ASP A 29 SHEET 3 B 5 GLY A 135 ASN A 143 -1 N ILE A 139 O ALA A 154 SHEET 4 B 5 TYR A 74 CYS A 81 -1 N CYS A 81 O ASN A 136 SHEET 5 B 5 THR A 102 THR A 103 -1 O THR A 102 N TYR A 76 SHEET 1 C 4 ILE A 35 VAL A 42 0 SHEET 2 C 4 ILE A 60 LEU A 67 -1 O GLU A 61 N LYS A 41 SHEET 3 C 4 TYR A 117 LEU A 124 -1 O LEU A 122 N ILE A 62 SHEET 4 C 4 PHE A 107 ASN A 109 -1 N ALA A 108 O ASN A 119 SHEET 1 D 2 MSE A 96 ASN A 97 0 SHEET 2 D 2 GLN A 130 PHE A 131 -1 O GLN A 130 N ASN A 97 SHEET 1 E 4 ASN A 164 SER A 170 0 SHEET 2 E 4 HIS A 181 ASN A 189 -1 O ASN A 189 N ASN A 164 SHEET 3 E 4 GLN A 228 TYR A 231 -1 O TYR A 231 N PHE A 186 SHEET 4 E 4 SER A 223 LEU A 225 -1 N LEU A 225 O GLN A 228 SHEET 1 F 3 ASN A 164 SER A 170 0 SHEET 2 F 3 HIS A 181 ASN A 189 -1 O ASN A 189 N ASN A 164 SHEET 3 F 3 ILE A 238 PRO A 240 -1 O PHE A 239 N GLN A 182 SHEET 1 G 3 LEU A 202 GLN A 208 0 SHEET 2 G 3 GLU A 394 TYR A 401 -1 O TYR A 398 N PHE A 205 SHEET 3 G 3 ARG A 410 ARG A 418 -1 O GLY A 413 N VAL A 399 SHEET 1 H 3 ARG A 246 GLU A 249 0 SHEET 2 H 3 GLY A 363 PRO A 373 -1 O TYR A 365 N MSE A 248 SHEET 3 H 3 PHE A 295 ILE A 297 -1 N PHE A 296 O SER A 364 SHEET 1 I 3 ARG A 246 GLU A 249 0 SHEET 2 I 3 GLY A 363 PRO A 373 -1 O TYR A 365 N MSE A 248 SHEET 3 I 3 GLY A 326 ASN A 331 -1 N ASN A 331 O GLN A 368 SHEET 1 J 5 VAL A 260 HIS A 266 0 SHEET 2 J 5 TYR A 269 LEU A 274 -1 O ASN A 271 N SER A 264 SHEET 3 J 5 TYR A 311 ALA A 319 1 O HIS A 315 N VAL A 272 SHEET 4 J 5 GLN A 353 LYS A 361 -1 O VAL A 358 N VAL A 314 SHEET 5 J 5 GLY A 346 ASN A 348 -1 N ASN A 348 O GLN A 353 SSBOND 1 CYS A 299 CYS A 302 1555 1555 2.08 LINK C TYR A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N ASN A 97 1555 1555 1.32 LINK C PRO A 221 N AMSE A 222 1555 1555 1.32 LINK C PRO A 221 N CMSE A 222 1555 1555 1.33 LINK C AMSE A 222 N SER A 223 1555 1555 1.34 LINK C CMSE A 222 N SER A 223 1555 1555 1.33 LINK C ARG A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N GLU A 249 1555 1555 1.33 LINK C GLY A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N HIS A 259 1555 1555 1.33 LINK C LEU A 274 N MSE A 275 1555 1555 1.32 LINK C MSE A 275 N THR A 276 1555 1555 1.32 LINK C LYS A 344 N MSE A 345 1555 1555 1.31 LINK C MSE A 345 N GLY A 346 1555 1555 1.32 LINK C PRO A 403 N MSE A 404 1555 1555 1.34 LINK C MSE A 404 N GLY A 405 1555 1555 1.33 LINK OE2 GLU A 226 MG MG A 507 1555 1555 2.38 LINK OE1 GLU A 244 MG MG A 506 1555 1555 2.36 LINK OD2 ASP A 290 MG MG A 506 1555 1555 2.41 LINK OD1 ASP A 290 MG MG A 506 1555 1555 2.48 LINK OD1 ASP A 292 MG MG A 506 1555 1555 2.20 LINK O GLN A 392 MG MG A 506 1555 1555 2.16 LINK OE1 GLN A 392 MG MG A 506 1555 1555 2.98 LINK MG MG A 506 O HOH A 759 1555 1555 2.39 LINK MG MG A 507 O HOH A 832 1555 1555 2.19 LINK MG MG A 507 O HOH A 854 1555 1555 2.23 LINK MG MG A 507 O HOH A 855 1555 1555 2.30 LINK MG MG A 507 O HOH A 857 1555 1555 2.26 CISPEP 1 LEU A 124 PRO A 125 0 -6.10 CISPEP 2 ASN A 267 PRO A 268 0 7.84 SITE 1 AC1 9 VAL A 162 ASN A 164 ASP A 174 ASN A 189 SITE 2 AC1 9 ASN A 190 LYS A 191 ASN A 192 PHE A 193 SITE 3 AC1 9 TYR A 233 SITE 1 AC2 6 ARG A 212 ASN A 337 VAL A 338 LEU A 339 SITE 2 AC2 6 HOH A 612 HOH A 827 SITE 1 AC3 8 TRP A 85 TYR A 207 ASN A 210 ARG A 212 SITE 2 AC3 8 TYR A 398 HOH A 688 HOH A 689 HOH A 805 SITE 1 AC4 3 ILE A 204 ASP A 218 LEU A 219 SITE 1 AC5 4 ASN A 227 ALA A 357 HOH A 749 HOH A 859 SITE 1 AC6 5 GLU A 244 ASP A 290 ASP A 292 GLN A 392 SITE 2 AC6 5 HOH A 759 SITE 1 AC7 5 GLU A 226 HOH A 832 HOH A 854 HOH A 855 SITE 2 AC7 5 HOH A 857 CRYST1 96.567 96.567 148.970 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006713 0.00000