data_4RGL # _entry.id 4RGL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4RGL pdb_00004rgl 10.2210/pdb4rgl/pdb RCSB RCSB087320 ? ? WWPDB D_1000087320 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-374857 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4RGL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-09-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a Fic family protein (Dde_2494) from Desulfovibrio desulfuricans G20 at 2.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4RGL _cell.length_a 56.129 _cell.length_b 56.129 _cell.length_c 251.447 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RGL _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Filamentation induced by cAMP protein Fic' 39299.895 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)IKPSNYQPPYTITPAIVNLVAEIGEIIGRYTVLAEQNLTPRLRRENRIRTIQASLAIENNTLTLEQVTAVIDGK RVLGHPREIQEVRNAFATYEA(MSE)EDWDASVEGDLLAAHELL(MSE)RGLVDETGRYRSGGVGIFRGEQLVH(MSE)A PPADRVPKL(MSE)ADLLDWLENTNEHPLVASCIFHYEFEFIHPFADGNGR(MSE)GRLWQTLILRNWKPLLAYLPVETV IRDRQEDYYRVLAVADSQADATPFVEF(MSE)LGALRDAVREAVSTDHVGDQVTDQVAALIRAIGGGELSSNDL(MSE)Q ALGLSHRPTFRNNYLNPA(MSE)EDEWIERTQPDSPRSPTQRYRLTGKGQRWLQHHADE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMIKPSNYQPPYTITPAIVNLVAEIGEIIGRYTVLAEQNLTPRLRRENRIRTIQASLAIENNTLTLEQVTAVIDGKRVLG HPREIQEVRNAFATYEAMEDWDASVEGDLLAAHELLMRGLVDETGRYRSGGVGIFRGEQLVHMAPPADRVPKLMADLLDW LENTNEHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLILRNWKPLLAYLPVETVIRDRQEDYYRVLAVADSQADATPF VEFMLGALRDAVREAVSTDHVGDQVTDQVAALIRAIGGGELSSNDLMQALGLSHRPTFRNNYLNPAMEDEWIERTQPDSP RSPTQRYRLTGKGQRWLQHHADE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-374857 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ILE n 1 4 LYS n 1 5 PRO n 1 6 SER n 1 7 ASN n 1 8 TYR n 1 9 GLN n 1 10 PRO n 1 11 PRO n 1 12 TYR n 1 13 THR n 1 14 ILE n 1 15 THR n 1 16 PRO n 1 17 ALA n 1 18 ILE n 1 19 VAL n 1 20 ASN n 1 21 LEU n 1 22 VAL n 1 23 ALA n 1 24 GLU n 1 25 ILE n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ILE n 1 30 GLY n 1 31 ARG n 1 32 TYR n 1 33 THR n 1 34 VAL n 1 35 LEU n 1 36 ALA n 1 37 GLU n 1 38 GLN n 1 39 ASN n 1 40 LEU n 1 41 THR n 1 42 PRO n 1 43 ARG n 1 44 LEU n 1 45 ARG n 1 46 ARG n 1 47 GLU n 1 48 ASN n 1 49 ARG n 1 50 ILE n 1 51 ARG n 1 52 THR n 1 53 ILE n 1 54 GLN n 1 55 ALA n 1 56 SER n 1 57 LEU n 1 58 ALA n 1 59 ILE n 1 60 GLU n 1 61 ASN n 1 62 ASN n 1 63 THR n 1 64 LEU n 1 65 THR n 1 66 LEU n 1 67 GLU n 1 68 GLN n 1 69 VAL n 1 70 THR n 1 71 ALA n 1 72 VAL n 1 73 ILE n 1 74 ASP n 1 75 GLY n 1 76 LYS n 1 77 ARG n 1 78 VAL n 1 79 LEU n 1 80 GLY n 1 81 HIS n 1 82 PRO n 1 83 ARG n 1 84 GLU n 1 85 ILE n 1 86 GLN n 1 87 GLU n 1 88 VAL n 1 89 ARG n 1 90 ASN n 1 91 ALA n 1 92 PHE n 1 93 ALA n 1 94 THR n 1 95 TYR n 1 96 GLU n 1 97 ALA n 1 98 MSE n 1 99 GLU n 1 100 ASP n 1 101 TRP n 1 102 ASP n 1 103 ALA n 1 104 SER n 1 105 VAL n 1 106 GLU n 1 107 GLY n 1 108 ASP n 1 109 LEU n 1 110 LEU n 1 111 ALA n 1 112 ALA n 1 113 HIS n 1 114 GLU n 1 115 LEU n 1 116 LEU n 1 117 MSE n 1 118 ARG n 1 119 GLY n 1 120 LEU n 1 121 VAL n 1 122 ASP n 1 123 GLU n 1 124 THR n 1 125 GLY n 1 126 ARG n 1 127 TYR n 1 128 ARG n 1 129 SER n 1 130 GLY n 1 131 GLY n 1 132 VAL n 1 133 GLY n 1 134 ILE n 1 135 PHE n 1 136 ARG n 1 137 GLY n 1 138 GLU n 1 139 GLN n 1 140 LEU n 1 141 VAL n 1 142 HIS n 1 143 MSE n 1 144 ALA n 1 145 PRO n 1 146 PRO n 1 147 ALA n 1 148 ASP n 1 149 ARG n 1 150 VAL n 1 151 PRO n 1 152 LYS n 1 153 LEU n 1 154 MSE n 1 155 ALA n 1 156 ASP n 1 157 LEU n 1 158 LEU n 1 159 ASP n 1 160 TRP n 1 161 LEU n 1 162 GLU n 1 163 ASN n 1 164 THR n 1 165 ASN n 1 166 GLU n 1 167 HIS n 1 168 PRO n 1 169 LEU n 1 170 VAL n 1 171 ALA n 1 172 SER n 1 173 CYS n 1 174 ILE n 1 175 PHE n 1 176 HIS n 1 177 TYR n 1 178 GLU n 1 179 PHE n 1 180 GLU n 1 181 PHE n 1 182 ILE n 1 183 HIS n 1 184 PRO n 1 185 PHE n 1 186 ALA n 1 187 ASP n 1 188 GLY n 1 189 ASN n 1 190 GLY n 1 191 ARG n 1 192 MSE n 1 193 GLY n 1 194 ARG n 1 195 LEU n 1 196 TRP n 1 197 GLN n 1 198 THR n 1 199 LEU n 1 200 ILE n 1 201 LEU n 1 202 ARG n 1 203 ASN n 1 204 TRP n 1 205 LYS n 1 206 PRO n 1 207 LEU n 1 208 LEU n 1 209 ALA n 1 210 TYR n 1 211 LEU n 1 212 PRO n 1 213 VAL n 1 214 GLU n 1 215 THR n 1 216 VAL n 1 217 ILE n 1 218 ARG n 1 219 ASP n 1 220 ARG n 1 221 GLN n 1 222 GLU n 1 223 ASP n 1 224 TYR n 1 225 TYR n 1 226 ARG n 1 227 VAL n 1 228 LEU n 1 229 ALA n 1 230 VAL n 1 231 ALA n 1 232 ASP n 1 233 SER n 1 234 GLN n 1 235 ALA n 1 236 ASP n 1 237 ALA n 1 238 THR n 1 239 PRO n 1 240 PHE n 1 241 VAL n 1 242 GLU n 1 243 PHE n 1 244 MSE n 1 245 LEU n 1 246 GLY n 1 247 ALA n 1 248 LEU n 1 249 ARG n 1 250 ASP n 1 251 ALA n 1 252 VAL n 1 253 ARG n 1 254 GLU n 1 255 ALA n 1 256 VAL n 1 257 SER n 1 258 THR n 1 259 ASP n 1 260 HIS n 1 261 VAL n 1 262 GLY n 1 263 ASP n 1 264 GLN n 1 265 VAL n 1 266 THR n 1 267 ASP n 1 268 GLN n 1 269 VAL n 1 270 ALA n 1 271 ALA n 1 272 LEU n 1 273 ILE n 1 274 ARG n 1 275 ALA n 1 276 ILE n 1 277 GLY n 1 278 GLY n 1 279 GLY n 1 280 GLU n 1 281 LEU n 1 282 SER n 1 283 SER n 1 284 ASN n 1 285 ASP n 1 286 LEU n 1 287 MSE n 1 288 GLN n 1 289 ALA n 1 290 LEU n 1 291 GLY n 1 292 LEU n 1 293 SER n 1 294 HIS n 1 295 ARG n 1 296 PRO n 1 297 THR n 1 298 PHE n 1 299 ARG n 1 300 ASN n 1 301 ASN n 1 302 TYR n 1 303 LEU n 1 304 ASN n 1 305 PRO n 1 306 ALA n 1 307 MSE n 1 308 GLU n 1 309 ASP n 1 310 GLU n 1 311 TRP n 1 312 ILE n 1 313 GLU n 1 314 ARG n 1 315 THR n 1 316 GLN n 1 317 PRO n 1 318 ASP n 1 319 SER n 1 320 PRO n 1 321 ARG n 1 322 SER n 1 323 PRO n 1 324 THR n 1 325 GLN n 1 326 ARG n 1 327 TYR n 1 328 ARG n 1 329 LEU n 1 330 THR n 1 331 GLY n 1 332 LYS n 1 333 GLY n 1 334 GLN n 1 335 ARG n 1 336 TRP n 1 337 LEU n 1 338 GLN n 1 339 HIS n 1 340 HIS n 1 341 ALA n 1 342 ASP n 1 343 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Desulfovibrio desulfuricans' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Dde_2494 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain G20 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio alaskensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 207559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q30YF5_DESAG _struct_ref.pdbx_db_accession Q30YF5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIKPSNYQPPYTITPAIVNLVAEIGEIIGRYTVLAEQNLTPRLRRENRIRTIQASLAIENNTLTLEQVTAVIDGKRVLGH PREIQEVRNAFATYEAMEDWDASVEGDLLAAHELLMRGLVDETGRYRSGGVGIFRGEQLVHMAPPADRVPKLMADLLDWL ENTNEHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLILRNWKPLLAYLPVETVIRDRQEDYYRVLAVADSQADATPFV EFMLGALRDAVREAVSTDHVGDQVTDQVAALIRAIGGGELSSNDLMQALGLSHRPTFRNNYLNPAMEDEWIERTQPDSPR SPTQRYRLTGKGQRWLQHHADE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RGL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 343 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q30YF5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 342 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 342 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4RGL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q30YF5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4RGL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.0% MPD, 0.1M CAPS pH 10.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2007-04-07 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97895 1.0 2 0.97929 1.0 3 0.91837 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97895,0.97929,0.91837 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4RGL _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 41.908 _reflns.number_obs 11879 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_netI_over_sigmaI 13.330 _reflns.percent_possible_obs 99.300 _reflns.B_iso_Wilson_estimate 79.008 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 6.83 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.700 2.800 7724 ? 1123 1.261 1.7 ? ? 6.88 ? ? 94.800 1 1 2.800 2.910 7987 ? 1125 0.831 2.6 ? ? ? ? ? 100.000 2 1 2.910 3.040 8007 ? 1129 0.584 3.6 ? ? ? ? ? 100.000 3 1 3.040 3.200 8292 ? 1168 0.364 5.3 ? ? ? ? ? 100.000 4 1 3.200 3.400 8227 ? 1171 0.220 7.8 ? ? ? ? ? 100.000 5 1 3.400 3.660 8035 ? 1168 0.144 11.1 ? ? ? ? ? 100.000 6 1 3.660 4.030 8198 ? 1202 0.086 16.6 ? ? ? ? ? 99.800 7 1 4.030 4.600 8142 ? 1179 0.058 23.1 ? ? ? ? ? 100.000 8 1 4.600 5.770 8229 ? 1230 0.053 26.0 ? ? ? ? ? 99.900 9 1 5.770 41.910 8287 ? 1384 0.045 30.4 ? ? ? ? ? 98.800 10 1 # _refine.entry_id 4RGL _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 41.908 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3800 _refine.ls_number_reflns_obs 11803 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT.4. VAL 33 IS IN A REGIONS OF POOR ELECTRON DENSITY AND IS RAMACHANDRAN OUTLIER IN MOLPROBITY. 5.ELECTRON DENSITY CORRESPONDING TO AN INTER-DOMAIN LINKER BETWEEN THR 257-GLN 263 IS DISORDERED AND THIS REGION COULD NOT BE RELIABLY MODELED.THE POSITIONING OF THE TWO DOMAINS FROM A SINGLE SUBUNIT IS BASED ON THE PROXIMITY OF THE C-TERMINAL END OF ONE DOMAIN TO THE N-TERMINAL END OF THE SECOND DOMAIN. 6. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED INTO THE PUTATIVE ACTIVE SITE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2290 _refine.ls_R_factor_R_work 0.2274 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2627 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7400 _refine.ls_number_reflns_R_free 560 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 91.2670 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -10.6196 _refine.aniso_B[2][2] -10.6196 _refine.aniso_B[3][3] 21.2392 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9201 _refine.correlation_coeff_Fo_to_Fc_free 0.8767 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 180.990 _refine.B_iso_min 36.930 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.750 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4RGL _refine_analyze.Luzzati_coordinate_error_obs 0.495 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2546 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 2584 _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 41.908 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 1201 ? ? 12.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 69 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 383 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 2598 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 342 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 3174 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 2598 0.011 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 3536 0.380 ? 8.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.310 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 1.950 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.7000 _refine_ls_shell.d_res_low 2.9600 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 99.3800 _refine_ls_shell.number_reflns_R_work 2567 _refine_ls_shell.R_factor_all 0.2568 _refine_ls_shell.R_factor_R_work 0.2552 _refine_ls_shell.R_factor_R_free 0.2897 _refine_ls_shell.percent_reflns_R_free 4.8900 _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2699 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4RGL _struct.title 'Crystal structure of a Fic family protein (Dde_2494) from Desulfovibrio desulfuricans G20 at 2.70 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF02661 family, Fic/DOC protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, DNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.entry_id 4RGL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? THR A 33 ? THR A 14 THR A 32 1 ? 19 HELX_P HELX_P2 2 LEU A 35 ? ASN A 39 ? LEU A 34 ASN A 38 5 ? 5 HELX_P HELX_P3 3 THR A 41 ? GLU A 60 ? THR A 40 GLU A 59 1 ? 20 HELX_P HELX_P4 4 THR A 65 ? GLY A 75 ? THR A 64 GLY A 74 1 ? 11 HELX_P HELX_P5 5 HIS A 81 ? GLU A 96 ? HIS A 80 GLU A 95 1 ? 16 HELX_P HELX_P6 6 ALA A 97 ? TRP A 101 ? ALA A 96 TRP A 100 5 ? 5 HELX_P HELX_P7 7 VAL A 105 ? ARG A 118 ? VAL A 104 ARG A 117 1 ? 14 HELX_P HELX_P8 8 ARG A 149 ? THR A 164 ? ARG A 148 THR A 163 1 ? 16 HELX_P HELX_P9 9 HIS A 167 ? HIS A 183 ? HIS A 166 HIS A 182 1 ? 17 HELX_P HELX_P10 10 GLY A 188 ? ASN A 203 ? GLY A 187 ASN A 202 1 ? 16 HELX_P HELX_P11 11 LYS A 205 ? PRO A 212 ? LYS A 204 PRO A 211 5 ? 8 HELX_P HELX_P12 12 VAL A 213 ? ARG A 220 ? VAL A 212 ARG A 219 1 ? 8 HELX_P HELX_P13 13 ARG A 220 ? ALA A 235 ? ARG A 219 ALA A 234 1 ? 16 HELX_P HELX_P14 14 ALA A 237 ? THR A 258 ? ALA A 236 THR A 257 1 ? 22 HELX_P HELX_P15 15 THR A 266 ? GLY A 277 ? THR A 265 GLY A 276 1 ? 12 HELX_P HELX_P16 16 SER A 283 ? GLY A 291 ? SER A 282 GLY A 290 1 ? 9 HELX_P HELX_P17 17 HIS A 294 ? TYR A 302 ? HIS A 293 TYR A 301 1 ? 9 HELX_P HELX_P18 18 TYR A 302 ? ASP A 309 ? TYR A 301 ASP A 308 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 97 C ? ? ? 1_555 A MSE 98 N ? ? A ALA 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale2 covale both ? A MSE 98 C ? ? ? 1_555 A GLU 99 N ? ? A MSE 97 A GLU 98 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale3 covale both ? A LEU 116 C ? ? ? 1_555 A MSE 117 N ? ? A LEU 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale4 covale both ? A MSE 117 C ? ? ? 1_555 A ARG 118 N ? ? A MSE 116 A ARG 117 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale5 covale both ? A HIS 142 C ? ? ? 1_555 A MSE 143 N ? ? A HIS 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A MSE 143 C ? ? ? 1_555 A ALA 144 N ? ? A MSE 142 A ALA 143 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale7 covale both ? A LEU 153 C ? ? ? 1_555 A MSE 154 N ? ? A LEU 152 A MSE 153 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale8 covale both ? A MSE 154 C ? ? ? 1_555 A ALA 155 N ? ? A MSE 153 A ALA 154 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale9 covale both ? A ARG 191 C ? ? ? 1_555 A MSE 192 N ? ? A ARG 190 A MSE 191 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale10 covale both ? A MSE 192 C ? ? ? 1_555 A GLY 193 N ? ? A MSE 191 A GLY 192 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? A PHE 243 C ? ? ? 1_555 A MSE 244 N ? ? A PHE 242 A MSE 243 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale12 covale both ? A MSE 244 C ? ? ? 1_555 A LEU 245 N ? ? A MSE 243 A LEU 244 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale13 covale both ? A LEU 286 C ? ? ? 1_555 A MSE 287 N ? ? A LEU 285 A MSE 286 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale14 covale both ? A MSE 287 C ? ? ? 1_555 A GLN 288 N ? ? A MSE 286 A GLN 287 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale15 covale both ? A ALA 306 C ? ? ? 1_555 A MSE 307 N ? ? A ALA 305 A MSE 306 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale16 covale both ? A MSE 307 C ? ? ? 1_555 A GLU 308 N ? ? A MSE 306 A GLU 307 1_555 ? ? ? ? ? ? ? 1.362 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 133 ? ILE A 134 ? GLY A 132 ILE A 133 A 2 HIS A 142 ? MSE A 143 ? HIS A 141 MSE A 142 B 1 LEU A 281 ? SER A 282 ? LEU A 280 SER A 281 B 2 ARG A 326 ? LEU A 329 ? ARG A 325 LEU A 328 B 3 ILE A 312 ? ARG A 314 ? ILE A 311 ARG A 313 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 134 ? N ILE A 133 O HIS A 142 ? O HIS A 141 B 1 2 N LEU A 281 ? N LEU A 280 O TYR A 327 ? O TYR A 326 B 2 3 O ARG A 328 ? O ARG A 327 N GLU A 313 ? N GLU A 312 # _atom_sites.entry_id 4RGL _atom_sites.fract_transf_matrix[1][1] 0.017816 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017816 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003977 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ILE 3 2 ? ? ? A . n A 1 4 LYS 4 3 ? ? ? A . n A 1 5 PRO 5 4 ? ? ? A . n A 1 6 SER 6 5 ? ? ? A . n A 1 7 ASN 7 6 ? ? ? A . n A 1 8 TYR 8 7 7 TYR TYR A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 PRO 10 9 9 PRO PRO A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 TYR 12 11 11 TYR TYR A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 THR 15 14 14 THR THR A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 PRO 42 41 41 PRO PRO A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 ASN 48 47 47 ASN ASN A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ARG 51 50 50 ARG ARG A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 GLN 54 53 53 GLN GLN A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 ASN 61 60 60 ASN ASN A . n A 1 62 ASN 62 61 61 ASN ASN A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 GLN 68 67 67 GLN GLN A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 GLY 75 74 74 GLY GLY A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 ARG 77 76 76 ARG ARG A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 PRO 82 81 81 PRO PRO A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 GLN 86 85 85 GLN GLN A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 TYR 95 94 94 TYR TYR A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 MSE 98 97 97 MSE MSE A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 TRP 101 100 100 TRP TRP A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 ASP 108 107 107 ASP ASP A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 HIS 113 112 112 HIS HIS A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 MSE 117 116 116 MSE MSE A . n A 1 118 ARG 118 117 117 ARG ARG A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 ASP 122 121 121 ASP ASP A . n A 1 123 GLU 123 122 122 GLU GLU A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 ARG 126 125 125 ARG ARG A . n A 1 127 TYR 127 126 126 TYR TYR A . n A 1 128 ARG 128 127 127 ARG ARG A . n A 1 129 SER 129 128 128 SER SER A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 GLY 131 130 130 GLY GLY A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 PHE 135 134 134 PHE PHE A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 GLY 137 136 136 GLY GLY A . n A 1 138 GLU 138 137 137 GLU GLU A . n A 1 139 GLN 139 138 138 GLN GLN A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 HIS 142 141 141 HIS HIS A . n A 1 143 MSE 143 142 142 MSE MSE A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 PRO 145 144 144 PRO PRO A . n A 1 146 PRO 146 145 145 PRO PRO A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 PRO 151 150 150 PRO PRO A . n A 1 152 LYS 152 151 151 LYS LYS A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 MSE 154 153 153 MSE MSE A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 ASP 156 155 155 ASP ASP A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 TRP 160 159 159 TRP TRP A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 GLU 162 161 161 GLU GLU A . n A 1 163 ASN 163 162 162 ASN ASN A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 ASN 165 164 164 ASN ASN A . n A 1 166 GLU 166 165 165 GLU GLU A . n A 1 167 HIS 167 166 166 HIS HIS A . n A 1 168 PRO 168 167 167 PRO PRO A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 VAL 170 169 169 VAL VAL A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 SER 172 171 171 SER SER A . n A 1 173 CYS 173 172 172 CYS CYS A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 PHE 175 174 174 PHE PHE A . n A 1 176 HIS 176 175 175 HIS HIS A . n A 1 177 TYR 177 176 176 TYR TYR A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 PHE 179 178 178 PHE PHE A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 PHE 181 180 180 PHE PHE A . n A 1 182 ILE 182 181 181 ILE ILE A . n A 1 183 HIS 183 182 182 HIS HIS A . n A 1 184 PRO 184 183 183 PRO PRO A . n A 1 185 PHE 185 184 184 PHE PHE A . n A 1 186 ALA 186 185 185 ALA ALA A . n A 1 187 ASP 187 186 186 ASP ASP A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 ASN 189 188 188 ASN ASN A . n A 1 190 GLY 190 189 189 GLY GLY A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 MSE 192 191 191 MSE MSE A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 ARG 194 193 193 ARG ARG A . n A 1 195 LEU 195 194 194 LEU LEU A . n A 1 196 TRP 196 195 195 TRP TRP A . n A 1 197 GLN 197 196 196 GLN GLN A . n A 1 198 THR 198 197 197 THR THR A . n A 1 199 LEU 199 198 198 LEU LEU A . n A 1 200 ILE 200 199 199 ILE ILE A . n A 1 201 LEU 201 200 200 LEU LEU A . n A 1 202 ARG 202 201 201 ARG ARG A . n A 1 203 ASN 203 202 202 ASN ASN A . n A 1 204 TRP 204 203 203 TRP TRP A . n A 1 205 LYS 205 204 204 LYS LYS A . n A 1 206 PRO 206 205 205 PRO PRO A . n A 1 207 LEU 207 206 206 LEU LEU A . n A 1 208 LEU 208 207 207 LEU LEU A . n A 1 209 ALA 209 208 208 ALA ALA A . n A 1 210 TYR 210 209 209 TYR TYR A . n A 1 211 LEU 211 210 210 LEU LEU A . n A 1 212 PRO 212 211 211 PRO PRO A . n A 1 213 VAL 213 212 212 VAL VAL A . n A 1 214 GLU 214 213 213 GLU GLU A . n A 1 215 THR 215 214 214 THR THR A . n A 1 216 VAL 216 215 215 VAL VAL A . n A 1 217 ILE 217 216 216 ILE ILE A . n A 1 218 ARG 218 217 217 ARG ARG A . n A 1 219 ASP 219 218 218 ASP ASP A . n A 1 220 ARG 220 219 219 ARG ARG A . n A 1 221 GLN 221 220 220 GLN GLN A . n A 1 222 GLU 222 221 221 GLU GLU A . n A 1 223 ASP 223 222 222 ASP ASP A . n A 1 224 TYR 224 223 223 TYR TYR A . n A 1 225 TYR 225 224 224 TYR TYR A . n A 1 226 ARG 226 225 225 ARG ARG A . n A 1 227 VAL 227 226 226 VAL VAL A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 ALA 229 228 228 ALA ALA A . n A 1 230 VAL 230 229 229 VAL VAL A . n A 1 231 ALA 231 230 230 ALA ALA A . n A 1 232 ASP 232 231 231 ASP ASP A . n A 1 233 SER 233 232 232 SER SER A . n A 1 234 GLN 234 233 233 GLN GLN A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 ASP 236 235 235 ASP ASP A . n A 1 237 ALA 237 236 236 ALA ALA A . n A 1 238 THR 238 237 237 THR THR A . n A 1 239 PRO 239 238 238 PRO PRO A . n A 1 240 PHE 240 239 239 PHE PHE A . n A 1 241 VAL 241 240 240 VAL VAL A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 PHE 243 242 242 PHE PHE A . n A 1 244 MSE 244 243 243 MSE MSE A . n A 1 245 LEU 245 244 244 LEU LEU A . n A 1 246 GLY 246 245 245 GLY GLY A . n A 1 247 ALA 247 246 246 ALA ALA A . n A 1 248 LEU 248 247 247 LEU LEU A . n A 1 249 ARG 249 248 248 ARG ARG A . n A 1 250 ASP 250 249 249 ASP ASP A . n A 1 251 ALA 251 250 250 ALA ALA A . n A 1 252 VAL 252 251 251 VAL VAL A . n A 1 253 ARG 253 252 252 ARG ARG A . n A 1 254 GLU 254 253 253 GLU GLU A . n A 1 255 ALA 255 254 254 ALA ALA A . n A 1 256 VAL 256 255 255 VAL VAL A . n A 1 257 SER 257 256 256 SER SER A . n A 1 258 THR 258 257 257 THR THR A . n A 1 259 ASP 259 258 258 ASP ASP A . n A 1 260 HIS 260 259 259 HIS HIS A . n A 1 261 VAL 261 260 ? ? ? A . n A 1 262 GLY 262 261 ? ? ? A . n A 1 263 ASP 263 262 ? ? ? A . n A 1 264 GLN 264 263 263 GLN GLN A . n A 1 265 VAL 265 264 264 VAL VAL A . n A 1 266 THR 266 265 265 THR THR A . n A 1 267 ASP 267 266 266 ASP ASP A . n A 1 268 GLN 268 267 267 GLN GLN A . n A 1 269 VAL 269 268 268 VAL VAL A . n A 1 270 ALA 270 269 269 ALA ALA A . n A 1 271 ALA 271 270 270 ALA ALA A . n A 1 272 LEU 272 271 271 LEU LEU A . n A 1 273 ILE 273 272 272 ILE ILE A . n A 1 274 ARG 274 273 273 ARG ARG A . n A 1 275 ALA 275 274 274 ALA ALA A . n A 1 276 ILE 276 275 275 ILE ILE A . n A 1 277 GLY 277 276 276 GLY GLY A . n A 1 278 GLY 278 277 277 GLY GLY A . n A 1 279 GLY 279 278 278 GLY GLY A . n A 1 280 GLU 280 279 279 GLU GLU A . n A 1 281 LEU 281 280 280 LEU LEU A . n A 1 282 SER 282 281 281 SER SER A . n A 1 283 SER 283 282 282 SER SER A . n A 1 284 ASN 284 283 283 ASN ASN A . n A 1 285 ASP 285 284 284 ASP ASP A . n A 1 286 LEU 286 285 285 LEU LEU A . n A 1 287 MSE 287 286 286 MSE MSE A . n A 1 288 GLN 288 287 287 GLN GLN A . n A 1 289 ALA 289 288 288 ALA ALA A . n A 1 290 LEU 290 289 289 LEU LEU A . n A 1 291 GLY 291 290 290 GLY GLY A . n A 1 292 LEU 292 291 291 LEU LEU A . n A 1 293 SER 293 292 292 SER SER A . n A 1 294 HIS 294 293 293 HIS HIS A . n A 1 295 ARG 295 294 294 ARG ARG A . n A 1 296 PRO 296 295 295 PRO PRO A . n A 1 297 THR 297 296 296 THR THR A . n A 1 298 PHE 298 297 297 PHE PHE A . n A 1 299 ARG 299 298 298 ARG ARG A . n A 1 300 ASN 300 299 299 ASN ASN A . n A 1 301 ASN 301 300 300 ASN ASN A . n A 1 302 TYR 302 301 301 TYR TYR A . n A 1 303 LEU 303 302 302 LEU LEU A . n A 1 304 ASN 304 303 303 ASN ASN A . n A 1 305 PRO 305 304 304 PRO PRO A . n A 1 306 ALA 306 305 305 ALA ALA A . n A 1 307 MSE 307 306 306 MSE MSE A . n A 1 308 GLU 308 307 307 GLU GLU A . n A 1 309 ASP 309 308 308 ASP ASP A . n A 1 310 GLU 310 309 309 GLU GLU A . n A 1 311 TRP 311 310 310 TRP TRP A . n A 1 312 ILE 312 311 311 ILE ILE A . n A 1 313 GLU 313 312 312 GLU GLU A . n A 1 314 ARG 314 313 313 ARG ARG A . n A 1 315 THR 315 314 314 THR THR A . n A 1 316 GLN 316 315 315 GLN GLN A . n A 1 317 PRO 317 316 316 PRO PRO A . n A 1 318 ASP 318 317 317 ASP ASP A . n A 1 319 SER 319 318 318 SER SER A . n A 1 320 PRO 320 319 319 PRO PRO A . n A 1 321 ARG 321 320 320 ARG ARG A . n A 1 322 SER 322 321 321 SER SER A . n A 1 323 PRO 323 322 322 PRO PRO A . n A 1 324 THR 324 323 323 THR THR A . n A 1 325 GLN 325 324 324 GLN GLN A . n A 1 326 ARG 326 325 325 ARG ARG A . n A 1 327 TYR 327 326 326 TYR TYR A . n A 1 328 ARG 328 327 327 ARG ARG A . n A 1 329 LEU 329 328 328 LEU LEU A . n A 1 330 THR 330 329 329 THR THR A . n A 1 331 GLY 331 330 330 GLY GLY A . n A 1 332 LYS 332 331 331 LYS LYS A . n A 1 333 GLY 333 332 332 GLY GLY A . n A 1 334 GLN 334 333 333 GLN GLN A . n A 1 335 ARG 335 334 334 ARG ARG A . n A 1 336 TRP 336 335 ? ? ? A . n A 1 337 LEU 337 336 ? ? ? A . n A 1 338 GLN 338 337 ? ? ? A . n A 1 339 HIS 339 338 ? ? ? A . n A 1 340 HIS 340 339 ? ? ? A . n A 1 341 ALA 341 340 ? ? ? A . n A 1 342 ASP 342 341 ? ? ? A . n A 1 343 GLU 343 342 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 401 343 UNL UNL A . C 3 HOH 1 501 344 HOH HOH A . C 3 HOH 2 502 345 HOH HOH A . C 3 HOH 3 503 346 HOH HOH A . C 3 HOH 4 504 347 HOH HOH A . C 3 HOH 5 505 348 HOH HOH A . C 3 HOH 6 506 349 HOH HOH A . C 3 HOH 7 507 350 HOH HOH A . C 3 HOH 8 508 351 HOH HOH A . C 3 HOH 9 509 352 HOH HOH A . C 3 HOH 10 510 353 HOH HOH A . C 3 HOH 11 511 354 HOH HOH A . C 3 HOH 12 512 355 HOH HOH A . C 3 HOH 13 513 356 HOH HOH A . C 3 HOH 14 514 357 HOH HOH A . C 3 HOH 15 515 358 HOH HOH A . C 3 HOH 16 516 359 HOH HOH A . C 3 HOH 17 517 360 HOH HOH A . C 3 HOH 18 518 361 HOH HOH A . C 3 HOH 19 519 362 HOH HOH A . C 3 HOH 20 520 363 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 98 A MSE 97 ? MET SELENOMETHIONINE 2 A MSE 117 A MSE 116 ? MET SELENOMETHIONINE 3 A MSE 143 A MSE 142 ? MET SELENOMETHIONINE 4 A MSE 154 A MSE 153 ? MET SELENOMETHIONINE 5 A MSE 192 A MSE 191 ? MET SELENOMETHIONINE 6 A MSE 244 A MSE 243 ? MET SELENOMETHIONINE 7 A MSE 287 A MSE 286 ? MET SELENOMETHIONINE 8 A MSE 307 A MSE 306 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-29 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -5.2389 _pdbx_refine_tls.origin_y 19.9229 _pdbx_refine_tls.origin_z 44.6250 _pdbx_refine_tls.T[1][1] 0.0533 _pdbx_refine_tls.T[2][2] 0.1234 _pdbx_refine_tls.T[3][3] -0.0145 _pdbx_refine_tls.T[1][2] -0.0609 _pdbx_refine_tls.T[1][3] 0.0152 _pdbx_refine_tls.T[2][3] 0.0283 _pdbx_refine_tls.L[1][1] 2.3245 _pdbx_refine_tls.L[2][2] 1.4741 _pdbx_refine_tls.L[3][3] 1.2082 _pdbx_refine_tls.L[1][2] -1.6362 _pdbx_refine_tls.L[1][3] -0.4303 _pdbx_refine_tls.L[2][3] -0.0760 _pdbx_refine_tls.S[1][1] -0.2768 _pdbx_refine_tls.S[2][2] 0.2253 _pdbx_refine_tls.S[3][3] 0.0515 _pdbx_refine_tls.S[1][2] -0.0984 _pdbx_refine_tls.S[1][3] -0.1149 _pdbx_refine_tls.S[2][3] 0.1400 _pdbx_refine_tls.S[2][1] 0.1785 _pdbx_refine_tls.S[3][1] 0.0218 _pdbx_refine_tls.S[3][2] -0.1217 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ A|7-334 }' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'January 10, 2014 BUILT=20140307' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4RGL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (1-342) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 32 ? ? -88.81 -110.77 2 1 VAL A 33 ? ? 41.53 -113.82 3 1 LEU A 39 ? ? -68.69 92.93 4 1 GLU A 59 ? ? -94.66 32.10 5 1 TYR A 301 ? ? -125.16 -64.08 6 1 GLN A 315 ? ? -119.29 78.26 7 1 THR A 329 ? ? -112.63 -101.09 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 11 ? CG ? A TYR 12 CG 2 1 Y 1 A TYR 11 ? CD1 ? A TYR 12 CD1 3 1 Y 1 A TYR 11 ? CD2 ? A TYR 12 CD2 4 1 Y 1 A TYR 11 ? CE1 ? A TYR 12 CE1 5 1 Y 1 A TYR 11 ? CE2 ? A TYR 12 CE2 6 1 Y 1 A TYR 11 ? CZ ? A TYR 12 CZ 7 1 Y 1 A TYR 11 ? OH ? A TYR 12 OH 8 1 Y 1 A GLU 36 ? CG ? A GLU 37 CG 9 1 Y 1 A GLU 36 ? CD ? A GLU 37 CD 10 1 Y 1 A GLU 36 ? OE1 ? A GLU 37 OE1 11 1 Y 1 A GLU 36 ? OE2 ? A GLU 37 OE2 12 1 Y 1 A GLN 37 ? CG ? A GLN 38 CG 13 1 Y 1 A GLN 37 ? CD ? A GLN 38 CD 14 1 Y 1 A GLN 37 ? OE1 ? A GLN 38 OE1 15 1 Y 1 A GLN 37 ? NE2 ? A GLN 38 NE2 16 1 Y 1 A LEU 78 ? CG ? A LEU 79 CG 17 1 Y 1 A LEU 78 ? CD1 ? A LEU 79 CD1 18 1 Y 1 A LEU 78 ? CD2 ? A LEU 79 CD2 19 1 Y 1 A ASP 121 ? CG ? A ASP 122 CG 20 1 Y 1 A ASP 121 ? OD1 ? A ASP 122 OD1 21 1 Y 1 A ASP 121 ? OD2 ? A ASP 122 OD2 22 1 Y 1 A GLU 137 ? CG ? A GLU 138 CG 23 1 Y 1 A GLU 137 ? CD ? A GLU 138 CD 24 1 Y 1 A GLU 137 ? OE1 ? A GLU 138 OE1 25 1 Y 1 A GLU 137 ? OE2 ? A GLU 138 OE2 26 1 Y 1 A VAL 226 ? CG1 ? A VAL 227 CG1 27 1 Y 1 A VAL 226 ? CG2 ? A VAL 227 CG2 28 1 Y 1 A VAL 229 ? CG1 ? A VAL 230 CG1 29 1 Y 1 A VAL 229 ? CG2 ? A VAL 230 CG2 30 1 Y 1 A HIS 259 ? CG ? A HIS 260 CG 31 1 Y 1 A HIS 259 ? ND1 ? A HIS 260 ND1 32 1 Y 1 A HIS 259 ? CD2 ? A HIS 260 CD2 33 1 Y 1 A HIS 259 ? CE1 ? A HIS 260 CE1 34 1 Y 1 A HIS 259 ? NE2 ? A HIS 260 NE2 35 1 Y 1 A LYS 331 ? CG ? A LYS 332 CG 36 1 Y 1 A LYS 331 ? CD ? A LYS 332 CD 37 1 Y 1 A LYS 331 ? CE ? A LYS 332 CE 38 1 Y 1 A LYS 331 ? NZ ? A LYS 332 NZ 39 1 Y 1 A GLN 333 ? CG ? A GLN 334 CG 40 1 Y 1 A GLN 333 ? CD ? A GLN 334 CD 41 1 Y 1 A GLN 333 ? OE1 ? A GLN 334 OE1 42 1 Y 1 A GLN 333 ? NE2 ? A GLN 334 NE2 43 1 Y 1 A ARG 334 ? CG ? A ARG 335 CG 44 1 Y 1 A ARG 334 ? CD ? A ARG 335 CD 45 1 Y 1 A ARG 334 ? NE ? A ARG 335 NE 46 1 Y 1 A ARG 334 ? CZ ? A ARG 335 CZ 47 1 Y 1 A ARG 334 ? NH1 ? A ARG 335 NH1 48 1 Y 1 A ARG 334 ? NH2 ? A ARG 335 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ILE 2 ? A ILE 3 4 1 Y 1 A LYS 3 ? A LYS 4 5 1 Y 1 A PRO 4 ? A PRO 5 6 1 Y 1 A SER 5 ? A SER 6 7 1 Y 1 A ASN 6 ? A ASN 7 8 1 Y 1 A VAL 260 ? A VAL 261 9 1 Y 1 A GLY 261 ? A GLY 262 10 1 Y 1 A ASP 262 ? A ASP 263 11 1 Y 1 A TRP 335 ? A TRP 336 12 1 Y 1 A LEU 336 ? A LEU 337 13 1 Y 1 A GLN 337 ? A GLN 338 14 1 Y 1 A HIS 338 ? A HIS 339 15 1 Y 1 A HIS 339 ? A HIS 340 16 1 Y 1 A ALA 340 ? A ALA 341 17 1 Y 1 A ASP 341 ? A ASP 342 18 1 Y 1 A GLU 342 ? A GLU 343 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 water HOH #