HEADER HYDROLASE 22-OCT-14 4RN3 TITLE CRYSTAL STRUCTURE OF A HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IA, TITLE 2 VARIANT 1 (GSU2069) FROM GEOBACTER SULFURREDUCENS PCA AT 2.15 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAD SUPERFAMILY HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS PCA; SOURCE 3 ORGANISM_TAXID: 243231; SOURCE 4 STRAIN: ATCC 51573 / DSM 12127 / PCA; SOURCE 5 GENE: GSU2069; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF13419 FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 2 22-NOV-17 4RN3 1 REMARK REVDAT 1 26-NOV-14 4RN3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HAD-SUPERFAMILY HYDROLASE, SUBFAMILY JRNL TITL 2 IA, VARIANT 1 (GSU2069) FROM GEOBACTER SULFURREDUCENS PCA AT JRNL TITL 3 2.15 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2817 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2235 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2673 REMARK 3 BIN R VALUE (WORKING SET) : 0.2242 REMARK 3 BIN FREE R VALUE : 0.2103 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.11 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.59950 REMARK 3 B22 (A**2) : -1.39080 REMARK 3 B33 (A**2) : -3.20870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.313 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3303 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4472 ; 10.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1562 ; 10.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 72 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 506 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3303 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 10.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 422 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3951 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.35 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.28 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 1.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 3 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6143 41.1582 26.1697 REMARK 3 T TENSOR REMARK 3 T11: -0.1437 T22: -0.0524 REMARK 3 T33: 0.0685 T12: -0.0035 REMARK 3 T13: 0.0123 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.7771 L22: 0.6733 REMARK 3 L33: 1.0208 L12: -0.2698 REMARK 3 L13: 0.0585 L23: -0.1832 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.0359 S13: -0.0316 REMARK 3 S21: 0.0567 S22: 0.0343 S23: -0.0198 REMARK 3 S31: 0.0571 S32: -0.0770 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 9 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5021 15.2822 16.5734 REMARK 3 T TENSOR REMARK 3 T11: -0.2680 T22: -0.3395 REMARK 3 T33: 0.2746 T12: 0.0221 REMARK 3 T13: -0.0513 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 4.7603 L22: 5.2407 REMARK 3 L33: 1.9766 L12: 2.9874 REMARK 3 L13: 0.6147 L23: 1.4677 REMARK 3 S TENSOR REMARK 3 S11: 0.1557 S12: 0.0647 S13: -1.0885 REMARK 3 S21: -0.0640 S22: 0.0035 S23: -0.6999 REMARK 3 S31: 0.2441 S32: -0.0445 S33: -0.1592 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE SAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). 5.MAGNESIUM (MG) FROM THE REMARK 3 CRYSTALLIZATION SOLUTION AND 1,2-ETHANEDIOL (EDO) USED AS A REMARK 3 CRYOPROTECTANT WERE MODELED INTO THE STRUCTURE. 6. THERE IS GAP REMARK 3 IN THE MODEL ON SUBUNIT B BETWEEN RESIDUES 62-71 SINCE ELECTRON REMARK 3 DENSITIES FOR THESE RESIDUES ARE DISORDERED. REMARK 4 REMARK 4 4RN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978662 REMARK 200 MONOCHROMATOR : 2-CRYSTAL, SI111 REMARK 200 OPTICS : 2-CRYSTAL MONOCHROMATOR, SI111, REMARK 200 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25747 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 39.958 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.710 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.76 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.90% POLYETHYLENE GLYCOL 3350 REMARK 280 0.3570M MAGNESIUM CHLORIDE, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.23450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 95.29650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.23450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 95.29650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 GLU B 62 REMARK 465 VAL B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 HIS B 66 REMARK 465 PHE B 67 REMARK 465 PHE B 68 REMARK 465 PRO B 69 REMARK 465 SER B 70 REMARK 465 PRO B 71 REMARK 465 GLY B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 TYR A 86 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 56 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 LEU B 155 CG CD1 CD2 REMARK 470 LEU B 179 CG CD1 CD2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 LEU B 211 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 68.15 61.84 REMARK 500 CYS A 17 -77.87 -89.42 REMARK 500 VAL A 20 -55.36 -120.58 REMARK 500 SER A 119 -60.19 -103.95 REMARK 500 CYS B 17 -77.78 -89.51 REMARK 500 VAL B 20 -56.11 -120.46 REMARK 500 THR B 57 -50.43 -122.67 REMARK 500 ASP B 73 -29.34 70.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 452 O REMARK 620 2 ASP A 173 OD1 90.8 REMARK 620 3 ASP A 16 OD2 87.9 97.6 REMARK 620 4 ASP A 18 O 165.4 101.7 97.8 REMARK 620 5 HOH A 442 O 85.3 90.3 169.7 87.1 REMARK 620 6 HOH A 453 O 74.8 163.3 90.4 91.6 80.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 422 O REMARK 620 2 ASP B 173 OD1 128.8 REMARK 620 3 SER B 174 OG 141.9 88.7 REMARK 620 4 ASP B 16 OD2 69.0 71.6 141.4 REMARK 620 5 ASP B 18 O 62.3 70.7 142.9 61.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-383524 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (1-216) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4RN3 A 3 212 UNP Q74BH2 Q74BH2_GEOSL 1 210 DBREF 4RN3 B 3 212 UNP Q74BH2 Q74BH2_GEOSL 1 210 SEQADV 4RN3 GLY A 0 UNP Q74BH2 EXPRESSION TAG SEQADV 4RN3 ALA A 2 UNP Q74BH2 VARIANT SEQADV 4RN3 VAL A 3 UNP Q74BH2 VARIANT SEQADV 4RN3 GLY B 0 UNP Q74BH2 EXPRESSION TAG SEQADV 4RN3 ALA B 2 UNP Q74BH2 VARIANT SEQADV 4RN3 VAL B 3 UNP Q74BH2 VARIANT SEQRES 1 A 213 GLY MSE ALA VAL SER SER ASN GLY GLY ALA ILE LYS ALA SEQRES 2 A 213 VAL ILE TYR ASP CYS ASP GLY VAL MSE PHE ASP SER PHE SEQRES 3 A 213 GLU ALA ASN LEU ALA PHE TYR GLN ARG ILE MSE GLU MSE SEQRES 4 A 213 MSE GLY ARG PRO ARG LEU SER ARG ASP ASN GLU GLU GLN SEQRES 5 A 213 MSE ARG ILE LEU HIS THR TYR ALA ASN ARG GLU VAL LEU SEQRES 6 A 213 ALA HIS PHE PHE PRO SER PRO GLY ASP TRP GLU GLU ALA SEQRES 7 A 213 VAL ARG CYS ALA GLY ALA ILE ASP TYR ARG GLU LEU VAL SEQRES 8 A 213 PRO LEU MSE ILE MSE GLU GLU GLY PHE ARG GLU ALA LEU SEQRES 9 A 213 ASP THR LEU LYS GLY ARG VAL GLY LEU GLY VAL CYS THR SEQRES 10 A 213 ASN ARG SER THR SER MSE ASP MSE VAL LEU ARG LEU PHE SEQRES 11 A 213 SER LEU ASP SER TYR PHE SER ILE VAL MSE THR ALA SER SEQRES 12 A 213 ARG VAL THR ASN PRO LYS PRO HIS PRO GLU PRO LEU LEU SEQRES 13 A 213 LYS VAL LEU GLU HIS PHE GLY ILE GLY PRO ARG GLU ALA SEQRES 14 A 213 LEU PHE VAL GLY ASP SER GLU VAL ASP ARG LEU SER ALA SEQRES 15 A 213 GLU ALA ALA GLY VAL PRO PHE VAL ALA TYR LYS ALA PRO SEQRES 16 A 213 LEU PRO ALA ALA TYR ARG MSE GLU HIS HIS ARG GLU ILE SEQRES 17 A 213 ILE ASP LEU LEU GLY SEQRES 1 B 213 GLY MSE ALA VAL SER SER ASN GLY GLY ALA ILE LYS ALA SEQRES 2 B 213 VAL ILE TYR ASP CYS ASP GLY VAL MSE PHE ASP SER PHE SEQRES 3 B 213 GLU ALA ASN LEU ALA PHE TYR GLN ARG ILE MSE GLU MSE SEQRES 4 B 213 MSE GLY ARG PRO ARG LEU SER ARG ASP ASN GLU GLU GLN SEQRES 5 B 213 MSE ARG ILE LEU HIS THR TYR ALA ASN ARG GLU VAL LEU SEQRES 6 B 213 ALA HIS PHE PHE PRO SER PRO GLY ASP TRP GLU GLU ALA SEQRES 7 B 213 VAL ARG CYS ALA GLY ALA ILE ASP TYR ARG GLU LEU VAL SEQRES 8 B 213 PRO LEU MSE ILE MSE GLU GLU GLY PHE ARG GLU ALA LEU SEQRES 9 B 213 ASP THR LEU LYS GLY ARG VAL GLY LEU GLY VAL CYS THR SEQRES 10 B 213 ASN ARG SER THR SER MSE ASP MSE VAL LEU ARG LEU PHE SEQRES 11 B 213 SER LEU ASP SER TYR PHE SER ILE VAL MSE THR ALA SER SEQRES 12 B 213 ARG VAL THR ASN PRO LYS PRO HIS PRO GLU PRO LEU LEU SEQRES 13 B 213 LYS VAL LEU GLU HIS PHE GLY ILE GLY PRO ARG GLU ALA SEQRES 14 B 213 LEU PHE VAL GLY ASP SER GLU VAL ASP ARG LEU SER ALA SEQRES 15 B 213 GLU ALA ALA GLY VAL PRO PHE VAL ALA TYR LYS ALA PRO SEQRES 16 B 213 LEU PRO ALA ALA TYR ARG MSE GLU HIS HIS ARG GLU ILE SEQRES 17 B 213 ILE ASP LEU LEU GLY MODRES 4RN3 MSE A 21 MET SELENOMETHIONINE MODRES 4RN3 MSE A 36 MET SELENOMETHIONINE MODRES 4RN3 MSE A 38 MET SELENOMETHIONINE MODRES 4RN3 MSE A 39 MET SELENOMETHIONINE MODRES 4RN3 MSE A 52 MET SELENOMETHIONINE MODRES 4RN3 MSE A 93 MET SELENOMETHIONINE MODRES 4RN3 MSE A 95 MET SELENOMETHIONINE MODRES 4RN3 MSE A 122 MET SELENOMETHIONINE MODRES 4RN3 MSE A 124 MET SELENOMETHIONINE MODRES 4RN3 MSE A 139 MET SELENOMETHIONINE MODRES 4RN3 MSE A 201 MET SELENOMETHIONINE MODRES 4RN3 MSE B 21 MET SELENOMETHIONINE MODRES 4RN3 MSE B 36 MET SELENOMETHIONINE MODRES 4RN3 MSE B 38 MET SELENOMETHIONINE MODRES 4RN3 MSE B 39 MET SELENOMETHIONINE MODRES 4RN3 MSE B 52 MET SELENOMETHIONINE MODRES 4RN3 MSE B 93 MET SELENOMETHIONINE MODRES 4RN3 MSE B 95 MET SELENOMETHIONINE MODRES 4RN3 MSE B 122 MET SELENOMETHIONINE MODRES 4RN3 MSE B 124 MET SELENOMETHIONINE MODRES 4RN3 MSE B 139 MET SELENOMETHIONINE MODRES 4RN3 MSE B 201 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 36 8 HET MSE A 38 8 HET MSE A 39 8 HET MSE A 52 8 HET MSE A 93 8 HET MSE A 95 8 HET MSE A 122 8 HET MSE A 124 16 HET MSE A 139 8 HET MSE A 201 8 HET MSE B 21 8 HET MSE B 36 8 HET MSE B 38 8 HET MSE B 39 8 HET MSE B 52 8 HET MSE B 93 8 HET MSE B 95 8 HET MSE B 122 8 HET MSE B 124 8 HET MSE B 139 8 HET MSE B 201 8 HET MG A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET MG B 301 1 HET EDO B 302 4 HET EDO B 303 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 10 HOH *185(H2 O) HELIX 1 1 SER A 24 MSE A 39 1 16 HELIX 2 2 ASN A 48 TYR A 58 1 11 HELIX 3 3 ALA A 59 PHE A 68 1 10 HELIX 4 4 GLY A 72 ILE A 84 1 13 HELIX 5 5 ASP A 85 MSE A 93 5 9 HELIX 6 6 GLY A 98 LYS A 107 1 10 HELIX 7 7 THR A 120 PHE A 129 1 10 HELIX 8 8 THR A 140 VAL A 144 5 5 HELIX 9 9 PRO A 151 GLY A 162 1 12 HELIX 10 10 GLY A 164 ARG A 166 5 3 HELIX 11 11 SER A 174 GLY A 185 1 12 HELIX 12 12 HIS A 203 LEU A 210 5 8 HELIX 13 13 SER B 24 MSE B 39 1 16 HELIX 14 14 ASN B 48 HIS B 56 1 9 HELIX 15 15 ASP B 73 ILE B 84 1 12 HELIX 16 16 ASP B 85 MSE B 93 5 9 HELIX 17 17 GLY B 98 LYS B 107 1 10 HELIX 18 18 SER B 121 PHE B 129 1 9 HELIX 19 19 LEU B 131 PHE B 135 5 5 HELIX 20 20 THR B 140 VAL B 144 5 5 HELIX 21 21 PRO B 151 GLY B 162 1 12 HELIX 22 22 GLY B 164 ARG B 166 5 3 HELIX 23 23 SER B 174 GLY B 185 1 12 HELIX 24 24 HIS B 203 LEU B 210 5 8 SHEET 1 A 6 ILE A 137 MSE A 139 0 SHEET 2 A 6 GLY A 111 CYS A 115 1 N VAL A 114 O MSE A 139 SHEET 3 A 6 ALA A 12 TYR A 15 1 N VAL A 13 O GLY A 111 SHEET 4 A 6 ALA A 168 GLY A 172 1 O LEU A 169 N ILE A 14 SHEET 5 A 6 PHE A 188 TYR A 191 1 O VAL A 189 N PHE A 170 SHEET 6 A 6 TYR A 199 MSE A 201 1 O MSE A 201 N ALA A 190 SHEET 1 B 2 PHE A 22 ASP A 23 0 SHEET 2 B 2 ILE A 94 MSE A 95 -1 O ILE A 94 N ASP A 23 SHEET 1 C 6 ILE B 137 MSE B 139 0 SHEET 2 C 6 GLY B 111 CYS B 115 1 N VAL B 114 O MSE B 139 SHEET 3 C 6 ALA B 12 TYR B 15 1 N VAL B 13 O GLY B 111 SHEET 4 C 6 ALA B 168 GLY B 172 1 O LEU B 169 N ILE B 14 SHEET 5 C 6 PHE B 188 TYR B 191 1 O VAL B 189 N PHE B 170 SHEET 6 C 6 TYR B 199 MSE B 201 1 O MSE B 201 N ALA B 190 SHEET 1 D 2 PHE B 22 ASP B 23 0 SHEET 2 D 2 ILE B 94 MSE B 95 -1 O ILE B 94 N ASP B 23 LINK C VAL A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N PHE A 22 1555 1555 1.35 LINK C ILE A 35 N MSE A 36 1555 1555 1.35 LINK C MSE A 36 N GLU A 37 1555 1555 1.35 LINK C GLU A 37 N MSE A 38 1555 1555 1.36 LINK C MSE A 38 N MSE A 39 1555 1555 1.35 LINK C MSE A 39 N GLY A 40 1555 1555 1.34 LINK C GLN A 51 N MSE A 52 1555 1555 1.35 LINK C MSE A 52 N ARG A 53 1555 1555 1.36 LINK C LEU A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N ILE A 94 1555 1555 1.33 LINK C ILE A 94 N MSE A 95 1555 1555 1.34 LINK C MSE A 95 N GLU A 96 1555 1555 1.34 LINK C SER A 121 N MSE A 122 1555 1555 1.37 LINK C MSE A 122 N ASP A 123 1555 1555 1.36 LINK C ASP A 123 N AMSE A 124 1555 1555 1.37 LINK C ASP A 123 N BMSE A 124 1555 1555 1.35 LINK C AMSE A 124 N VAL A 125 1555 1555 1.37 LINK C BMSE A 124 N VAL A 125 1555 1555 1.36 LINK C VAL A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N THR A 140 1555 1555 1.33 LINK C ARG A 200 N MSE A 201 1555 1555 1.32 LINK C MSE A 201 N GLU A 202 1555 1555 1.34 LINK C VAL B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N PHE B 22 1555 1555 1.34 LINK C ILE B 35 N MSE B 36 1555 1555 1.36 LINK C MSE B 36 N GLU B 37 1555 1555 1.37 LINK C GLU B 37 N MSE B 38 1555 1555 1.35 LINK C MSE B 38 N MSE B 39 1555 1555 1.34 LINK C MSE B 39 N GLY B 40 1555 1555 1.34 LINK C GLN B 51 N MSE B 52 1555 1555 1.34 LINK C MSE B 52 N ARG B 53 1555 1555 1.34 LINK C LEU B 92 N MSE B 93 1555 1555 1.34 LINK C MSE B 93 N ILE B 94 1555 1555 1.33 LINK C ILE B 94 N MSE B 95 1555 1555 1.35 LINK C MSE B 95 N GLU B 96 1555 1555 1.35 LINK C SER B 121 N MSE B 122 1555 1555 1.34 LINK C MSE B 122 N ASP B 123 1555 1555 1.36 LINK C ASP B 123 N MSE B 124 1555 1555 1.32 LINK C MSE B 124 N VAL B 125 1555 1555 1.34 LINK C VAL B 138 N MSE B 139 1555 1555 1.34 LINK C MSE B 139 N THR B 140 1555 1555 1.37 LINK C ARG B 200 N MSE B 201 1555 1555 1.37 LINK C MSE B 201 N GLU B 202 1555 1555 1.35 LINK MG MG A 301 O HOH A 452 1555 1555 1.94 LINK OD1 ASP A 173 MG MG A 301 1555 1555 1.95 LINK OD2 ASP A 16 MG MG A 301 1555 1555 1.96 LINK MG MG B 301 O HOH B 422 1555 1555 1.99 LINK O ASP A 18 MG MG A 301 1555 1555 1.99 LINK MG MG A 301 O HOH A 442 1555 1555 2.00 LINK OD1 ASP B 173 MG MG B 301 1555 1555 2.15 LINK MG MG A 301 O HOH A 453 1555 1555 2.31 LINK OG SER B 174 MG MG B 301 1555 1555 2.69 LINK OD2 ASP B 16 MG MG B 301 1555 1555 2.81 LINK O ASP B 18 MG MG B 301 1555 1555 3.00 CISPEP 1 LYS A 148 PRO A 149 0 15.58 CISPEP 2 LYS B 148 PRO B 149 0 16.35 SITE 1 AC1 6 ASP A 16 ASP A 18 ASP A 173 HOH A 442 SITE 2 AC1 6 HOH A 452 HOH A 453 SITE 1 AC2 5 GLU A 50 GLN A 51 HIS A 66 PHE A 67 SITE 2 AC2 5 EDO A 303 SITE 1 AC3 5 ARG A 41 PRO A 42 GLN A 51 EDO A 302 SITE 2 AC3 5 ARG B 143 SITE 1 AC4 2 SER A 142 ASP A 209 SITE 1 AC5 6 ASP B 16 ASP B 18 ASP B 173 SER B 174 SITE 2 AC5 6 ASP B 177 HOH B 422 SITE 1 AC6 1 LEU B 128 SITE 1 AC7 6 SER A 5 GLY A 108 MSE B 95 ARG B 100 SITE 2 AC7 6 PHE B 129 HOH B 418 CRYST1 58.469 190.593 40.866 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024470 0.00000