data_4RQA # _entry.id 4RQA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RQA RCSB RCSB087663 WWPDB D_1000087663 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetTrack NYSGRC-029686 . unspecified PDB 4RQB . unspecified # _pdbx_database_status.entry_id 4RQA _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-10-31 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ghosh, A.' 1 'Almo, S.C.' 2 'New York Structural Genomics Research Consortium (NYSGRC)' 3 # _citation.id primary _citation.title ;Crystal Structure of a Hypoxanthine Phosphoribosyltransferase (target ID NYSGRC-029686) from Staphylococcus aureus (orthorhombic space group) ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ghosh, A.' 1 primary 'Ahmed, A.' 2 primary 'Bhoshle, R.' 3 primary 'Seidel, R.' 4 primary 'Stead, M.' 5 primary 'Toro, R.' 6 primary 'Schramm, V.L.' 7 primary 'Almo, S.C.' 8 primary 'New York Structural Genomics Research Consortium (NYSGRC)' 9 # _cell.length_a 66.158 _cell.length_b 71.919 _cell.length_c 103.036 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4RQA _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.entry_id 4RQA _symmetry.Int_Tables_number 23 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypoxanthine phosphoribosyltransferase' 21239.414 1 2.4.2.8 ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 6 water nat water 18.015 113 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;S(MSE)E(MSE)NSV(MSE)HNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSA(MSE)F(MSE)SDLIK RIDTHLSIDF(MSE)DVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLD KPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN ; _entity_poly.pdbx_seq_one_letter_code_can ;SMEMNSVMHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGT ESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVV GYGLDYRELYRNLPYIGTLKPEVYSN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-029686 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MSE n 1 3 GLU n 1 4 MSE n 1 5 ASN n 1 6 SER n 1 7 VAL n 1 8 MSE n 1 9 HIS n 1 10 ASN n 1 11 ASP n 1 12 LEU n 1 13 LYS n 1 14 GLU n 1 15 VAL n 1 16 LEU n 1 17 LEU n 1 18 THR n 1 19 GLU n 1 20 GLU n 1 21 ASP n 1 22 ILE n 1 23 GLN n 1 24 ASN n 1 25 ILE n 1 26 CYS n 1 27 LYS n 1 28 GLU n 1 29 LEU n 1 30 GLY n 1 31 ALA n 1 32 GLN n 1 33 LEU n 1 34 THR n 1 35 LYS n 1 36 ASP n 1 37 TYR n 1 38 GLN n 1 39 GLY n 1 40 LYS n 1 41 PRO n 1 42 LEU n 1 43 VAL n 1 44 CYS n 1 45 VAL n 1 46 GLY n 1 47 ILE n 1 48 LEU n 1 49 LYS n 1 50 GLY n 1 51 SER n 1 52 ALA n 1 53 MSE n 1 54 PHE n 1 55 MSE n 1 56 SER n 1 57 ASP n 1 58 LEU n 1 59 ILE n 1 60 LYS n 1 61 ARG n 1 62 ILE n 1 63 ASP n 1 64 THR n 1 65 HIS n 1 66 LEU n 1 67 SER n 1 68 ILE n 1 69 ASP n 1 70 PHE n 1 71 MSE n 1 72 ASP n 1 73 VAL n 1 74 SER n 1 75 SER n 1 76 TYR n 1 77 HIS n 1 78 GLY n 1 79 GLY n 1 80 THR n 1 81 GLU n 1 82 SER n 1 83 THR n 1 84 GLY n 1 85 GLU n 1 86 VAL n 1 87 GLN n 1 88 ILE n 1 89 ILE n 1 90 LYS n 1 91 ASP n 1 92 LEU n 1 93 GLY n 1 94 SER n 1 95 SER n 1 96 ILE n 1 97 GLU n 1 98 ASN n 1 99 LYS n 1 100 ASP n 1 101 VAL n 1 102 LEU n 1 103 ILE n 1 104 ILE n 1 105 GLU n 1 106 ASP n 1 107 ILE n 1 108 LEU n 1 109 GLU n 1 110 THR n 1 111 GLY n 1 112 THR n 1 113 THR n 1 114 LEU n 1 115 LYS n 1 116 SER n 1 117 ILE n 1 118 THR n 1 119 GLU n 1 120 LEU n 1 121 LEU n 1 122 GLN n 1 123 SER n 1 124 ARG n 1 125 LYS n 1 126 VAL n 1 127 ASN n 1 128 SER n 1 129 LEU n 1 130 GLU n 1 131 ILE n 1 132 VAL n 1 133 THR n 1 134 LEU n 1 135 LEU n 1 136 ASP n 1 137 LYS n 1 138 PRO n 1 139 ASN n 1 140 ARG n 1 141 ARG n 1 142 LYS n 1 143 ALA n 1 144 ASP n 1 145 ILE n 1 146 GLU n 1 147 ALA n 1 148 LYS n 1 149 TYR n 1 150 VAL n 1 151 GLY n 1 152 LYS n 1 153 LYS n 1 154 ILE n 1 155 PRO n 1 156 ASP n 1 157 GLU n 1 158 PHE n 1 159 VAL n 1 160 VAL n 1 161 GLY n 1 162 TYR n 1 163 GLY n 1 164 LEU n 1 165 ASP n 1 166 TYR n 1 167 ARG n 1 168 GLU n 1 169 LEU n 1 170 TYR n 1 171 ARG n 1 172 ASN n 1 173 LEU n 1 174 PRO n 1 175 TYR n 1 176 ILE n 1 177 GLY n 1 178 THR n 1 179 LEU n 1 180 LYS n 1 181 PRO n 1 182 GLU n 1 183 VAL n 1 184 TYR n 1 185 SER n 1 186 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene hpt _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain USA300_TCH1516 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 451516 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) pRIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSGC-His _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A8YZK8_STAAT _struct_ref.pdbx_db_accession A8YZK8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEMNSVMHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTE STGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVG YGLDYRELYRNLPYIGTLKPEVYSN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RQA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 186 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A8YZK8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 185 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 185 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4RQA _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A8YZK8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4RQA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1 M Sodium Acetate, 3.5 M Sodium Formate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-07-19 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'ROSENBAUM-ROCK DOUBLE CRYSTAL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 1.075 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list '0.9790, 1.075' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.d_resolution_high 1.480 _reflns.d_resolution_low 20.000 _reflns.number_obs 40663 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_netI_over_sigmaI 14.800 _reflns.pdbx_chi_squared 1.179 _reflns.pdbx_redundancy 7.800 _reflns.percent_possible_obs 98.300 _reflns.entry_id 4RQA _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 41368 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.480 1.510 ? ? ? 0.940 ? ? 1.313 7.600 ? 2035 100.000 1 1 1.510 1.530 ? ? ? 0.804 ? ? 1.332 7.800 ? 2040 100.000 2 1 1.530 1.560 ? ? ? 0.650 ? ? 1.367 7.900 ? 2013 100.000 3 1 1.560 1.590 ? ? ? 0.525 ? ? 1.333 7.900 ? 2049 100.000 4 1 1.590 1.630 ? ? ? 0.457 ? ? 1.326 7.900 ? 2059 100.000 5 1 1.630 1.670 ? ? ? 0.421 ? ? 1.299 7.900 ? 2038 100.000 6 1 1.670 1.710 ? ? ? 0.329 ? ? 1.287 7.900 ? 2052 100.000 7 1 1.710 1.750 ? ? ? 0.237 ? ? 1.262 7.900 ? 2054 100.000 8 1 1.750 1.810 ? ? ? 0.189 ? ? 1.206 8.000 ? 2058 100.000 9 1 1.810 1.860 ? ? ? 0.148 ? ? 1.149 8.000 ? 2051 100.000 10 1 1.860 1.930 ? ? ? 0.125 ? ? 1.227 8.000 ? 2055 100.000 11 1 1.930 2.010 ? ? ? 0.092 ? ? 1.073 8.000 ? 2051 100.000 12 1 2.010 2.100 ? ? ? 0.083 ? ? 1.091 8.000 ? 2070 100.000 13 1 2.100 2.210 ? ? ? 0.072 ? ? 1.050 8.000 ? 2064 100.000 14 1 2.210 2.350 ? ? ? 0.067 ? ? 1.023 7.900 ? 2066 99.800 15 1 2.350 2.530 ? ? ? 0.068 ? ? 0.997 7.900 ? 2060 99.300 16 1 2.530 2.780 ? ? ? 0.068 ? ? 1.017 7.800 ? 2069 99.400 17 1 2.780 3.180 ? ? ? 0.058 ? ? 1.083 7.500 ? 2053 98.000 18 1 3.180 4.010 ? ? ? 0.053 ? ? 1.021 6.800 ? 1891 89.200 19 1 4.010 20.000 ? ? ? 0.049 ? ? 1.085 6.800 ? 1835 82.800 20 1 # _refine.entry_id 4RQA _refine.ls_d_res_high 1.4800 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.0500 _refine.ls_number_reflns_obs 40663 _refine.ls_number_reflns_all 41362 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: REFINED INDIVIDUALLY. Unmodeled densities near Mse7 is plausibly due to alternate conformation of the N-terminus ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1519 _refine.ls_R_factor_R_work 0.1497 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1942 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 2038 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 32.0720 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.4800 _refine.aniso_B[2][2] 0.1800 _refine.aniso_B[3][3] 0.3000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9710 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0570 _refine.pdbx_overall_ESU_R_Free 0.0590 _refine.overall_SU_ML 0.0400 _refine.overall_SU_B 2.4060 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 188.390 _refine.B_iso_min 9.110 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1394 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1527 _refine_hist.d_res_high 1.4800 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1439 0.025 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1448 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1938 2.344 2.026 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3356 1.560 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 180 6.253 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 59 29.708 25.763 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 272 14.279 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 17.480 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 233 0.132 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1559 0.014 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 275 0.009 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 709 9.874 2.806 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 707 9.746 2.794 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 883 11.624 4.204 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2887 6.953 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 45 37.637 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2947 24.596 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.480 _refine_ls_shell.d_res_low 1.5160 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.7000 _refine_ls_shell.number_reflns_R_work 2742 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2150 _refine_ls_shell.R_factor_R_free 0.2700 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 156 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2898 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4RQA _struct.title ;Crystal Structure of a Hypoxanthine Phosphoribosyltransferase (target ID NYSGRC-029686) from Staphylococcus aureus (orthorhombic space group) ; _struct.pdbx_descriptor 'Hypoxanthine phosphoribosyltransferase (E.C.2.4.2.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RQA _struct_keywords.text 'PRTase, NYSGRC, Structural Genomics, PSI-Biology, New York Structural Genomics Research Consortium, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 7 ? ASN A 10 ? VAL A 6 ASN A 9 5 ? 4 HELX_P HELX_P2 2 THR A 18 ? GLN A 38 ? THR A 17 GLN A 37 1 ? 21 HELX_P HELX_P3 3 GLY A 50 ? LYS A 60 ? GLY A 49 LYS A 59 1 ? 11 HELX_P HELX_P4 4 GLY A 111 ? SER A 123 ? GLY A 110 SER A 122 1 ? 13 HELX_P HELX_P5 5 PRO A 138 ? ARG A 141 ? PRO A 137 ARG A 140 5 ? 4 HELX_P HELX_P6 6 PRO A 181 ? TYR A 184 ? PRO A 180 TYR A 183 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A ASN 5 N ? ? A MSE 3 A ASN 4 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A VAL 7 C ? ? ? 1_555 A MSE 8 N ? ? A VAL 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.289 ? covale3 covale ? ? A MSE 8 C ? ? ? 1_555 A HIS 9 N ? ? A MSE 7 A HIS 8 1_555 ? ? ? ? ? ? ? 1.338 ? covale4 covale ? ? A ALA 52 C ? ? ? 1_555 A MSE 53 N ? ? A ALA 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.357 ? covale5 covale ? ? A MSE 53 C ? ? ? 1_555 A PHE 54 N ? ? A MSE 52 A PHE 53 1_555 ? ? ? ? ? ? ? 1.317 ? covale6 covale ? ? A PHE 54 C ? ? ? 1_555 A MSE 55 N ? ? A PHE 53 A MSE 54 1_555 ? ? ? ? ? ? ? 1.315 ? covale7 covale ? ? A MSE 55 C ? ? ? 1_555 A SER 56 N ? ? A MSE 54 A SER 55 1_555 ? ? ? ? ? ? ? 1.402 ? covale8 covale ? ? A PHE 70 C ? ? ? 1_555 A MSE 71 N ? ? A PHE 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.349 ? covale9 covale ? ? A MSE 71 C ? ? ? 1_555 A ASP 72 N ? ? A MSE 70 A ASP 71 1_555 ? ? ? ? ? ? ? 1.324 ? metalc1 metalc ? ? A ASP 57 OD1 ? ? ? 1_555 D NA . NA ? ? A ASP 56 A NA 203 1_555 ? ? ? ? ? ? ? 2.303 ? metalc2 metalc ? ? A SER 56 OG B ? ? 1_555 D NA . NA ? ? A SER 55 A NA 203 1_555 ? ? ? ? ? ? ? 2.445 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 48 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 47 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LYS _struct_mon_prot_cis.pdbx_label_seq_id_2 49 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 48 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 12 ? LEU A 17 ? LEU A 11 LEU A 16 A 2 ILE A 176 ? LEU A 179 ? ILE A 175 LEU A 178 A 3 VAL A 159 ? VAL A 160 ? VAL A 158 VAL A 159 B 1 VAL A 86 ? LYS A 90 ? VAL A 85 LYS A 89 B 2 LEU A 66 ? SER A 75 ? LEU A 65 SER A 74 B 3 LEU A 42 ? ILE A 47 ? LEU A 41 ILE A 46 B 4 ASP A 100 ? LEU A 108 ? ASP A 99 LEU A 107 B 5 SER A 128 ? ASP A 136 ? SER A 127 ASP A 135 B 6 TYR A 149 ? LYS A 153 ? TYR A 148 LYS A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 13 ? N LYS A 12 O THR A 178 ? O THR A 177 A 2 3 O GLY A 177 ? O GLY A 176 N VAL A 160 ? N VAL A 159 B 1 2 O GLN A 87 ? O GLN A 86 N SER A 74 ? N SER A 73 B 2 3 O SER A 67 ? O SER A 66 N CYS A 44 ? N CYS A 43 B 3 4 N VAL A 45 ? N VAL A 44 O ILE A 104 ? O ILE A 103 B 4 5 N GLU A 105 ? N GLU A 104 O VAL A 132 ? O VAL A 131 B 5 6 N THR A 133 ? N THR A 132 O GLY A 151 ? O GLY A 150 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 203' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACT A 204' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 205' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 206' AC7 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE CL A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLU A 19 ? GLU A 18 . ? 1_555 ? 2 AC1 8 GLU A 19 ? GLU A 18 . ? 2_665 ? 3 AC1 8 GLN A 23 ? GLN A 22 . ? 1_555 ? 4 AC1 8 GLN A 23 ? GLN A 22 . ? 2_665 ? 5 AC1 8 ASP A 57 ? ASP A 56 . ? 1_555 ? 6 AC1 8 LYS A 60 ? LYS A 59 . ? 1_555 ? 7 AC1 8 LYS A 60 ? LYS A 59 . ? 2_665 ? 8 AC1 8 ARG A 61 ? ARG A 60 . ? 2_665 ? 9 AC2 3 LEU A 29 ? LEU A 28 . ? 1_555 ? 10 AC2 3 VAL A 150 ? VAL A 149 . ? 1_555 ? 11 AC2 3 GLY A 151 ? GLY A 150 . ? 1_555 ? 12 AC3 6 SER A 56 ? SER A 55 . ? 2_665 ? 13 AC3 6 SER A 56 ? SER A 55 . ? 1_555 ? 14 AC3 6 ASP A 57 ? ASP A 56 . ? 2_665 ? 15 AC3 6 ASP A 57 ? ASP A 56 . ? 1_555 ? 16 AC3 6 CL H . ? CL A 207 . ? 2_665 ? 17 AC3 6 CL H . ? CL A 207 . ? 1_555 ? 18 AC4 6 LYS A 49 ? LYS A 48 . ? 1_555 ? 19 AC4 6 GLY A 50 ? GLY A 49 . ? 1_555 ? 20 AC4 6 ARG A 171 ? ARG A 170 . ? 1_555 ? 21 AC4 6 HOH I . ? HOH A 324 . ? 1_555 ? 22 AC4 6 HOH I . ? HOH A 327 . ? 1_555 ? 23 AC4 6 HOH I . ? HOH A 413 . ? 1_555 ? 24 AC5 3 GLU A 109 ? GLU A 108 . ? 1_555 ? 25 AC5 3 LYS A 137 ? LYS A 136 . ? 1_555 ? 26 AC5 3 VAL A 159 ? VAL A 158 . ? 1_555 ? 27 AC6 4 PRO A 41 ? PRO A 40 . ? 1_555 ? 28 AC6 4 LEU A 42 ? LEU A 41 . ? 1_555 ? 29 AC6 4 SER A 67 ? SER A 66 . ? 1_555 ? 30 AC6 4 LYS A 99 ? LYS A 98 . ? 1_555 ? 31 AC7 7 MSE A 53 ? MSE A 52 . ? 1_555 ? 32 AC7 7 SER A 56 ? SER A 55 . ? 2_665 ? 33 AC7 7 SER A 56 ? SER A 55 . ? 1_555 ? 34 AC7 7 ASP A 57 ? ASP A 56 . ? 1_555 ? 35 AC7 7 LYS A 60 ? LYS A 59 . ? 2_665 ? 36 AC7 7 NA D . ? NA A 203 . ? 2_665 ? 37 AC7 7 NA D . ? NA A 203 . ? 1_555 ? # _atom_sites.entry_id 4RQA _atom_sites.fract_transf_matrix[1][1] 0.015115 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013905 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009705 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 GLU 3 2 ? ? ? A . n A 1 4 MSE 4 3 3 MSE MSE A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 SER 6 5 5 SER SER A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 MSE 8 7 7 MSE MSE A . n A 1 9 HIS 9 8 8 HIS HIS A . n A 1 10 ASN 10 9 9 ASN ASN A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 GLU 19 18 18 GLU GLU A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 CYS 26 25 25 CYS CYS A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 GLN 32 31 31 GLN GLN A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 TYR 37 36 36 TYR TYR A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 CYS 44 43 43 CYS CYS A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 MSE 53 52 52 MSE MSE A . n A 1 54 PHE 54 53 53 PHE PHE A . n A 1 55 MSE 55 54 54 MSE MSE A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 ASP 57 56 56 ASP ASP A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 ARG 61 60 60 ARG ARG A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 HIS 65 64 64 HIS HIS A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 MSE 71 70 70 MSE MSE A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 TYR 76 75 75 TYR TYR A . n A 1 77 HIS 77 76 ? ? ? A . n A 1 78 GLY 78 77 ? ? ? A . n A 1 79 GLY 79 78 ? ? ? A . n A 1 80 THR 80 79 ? ? ? A . n A 1 81 GLU 81 80 ? ? ? A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 GLN 87 86 86 GLN GLN A . n A 1 88 ILE 88 87 87 ILE ILE A . n A 1 89 ILE 89 88 88 ILE ILE A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 GLY 93 92 92 GLY GLY A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 GLU 97 96 96 GLU GLU A . n A 1 98 ASN 98 97 97 ASN ASN A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 THR 113 112 112 THR THR A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 SER 123 122 122 SER SER A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 SER 128 127 127 SER SER A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 GLU 130 129 129 GLU GLU A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 THR 133 132 132 THR THR A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 LEU 135 134 134 LEU LEU A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 PRO 138 137 137 PRO PRO A . n A 1 139 ASN 139 138 138 ASN ASN A . n A 1 140 ARG 140 139 139 ARG ARG A . n A 1 141 ARG 141 140 140 ARG ARG A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 ASP 144 143 143 ASP ASP A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 GLU 146 145 145 GLU GLU A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 LYS 148 147 147 LYS LYS A . n A 1 149 TYR 149 148 148 TYR TYR A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 GLY 151 150 150 GLY GLY A . n A 1 152 LYS 152 151 151 LYS LYS A . n A 1 153 LYS 153 152 152 LYS LYS A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 PRO 155 154 154 PRO PRO A . n A 1 156 ASP 156 155 155 ASP ASP A . n A 1 157 GLU 157 156 156 GLU GLU A . n A 1 158 PHE 158 157 157 PHE PHE A . n A 1 159 VAL 159 158 158 VAL VAL A . n A 1 160 VAL 160 159 159 VAL VAL A . n A 1 161 GLY 161 160 160 GLY GLY A . n A 1 162 TYR 162 161 161 TYR TYR A . n A 1 163 GLY 163 162 162 GLY GLY A . n A 1 164 LEU 164 163 163 LEU LEU A . n A 1 165 ASP 165 164 164 ASP ASP A . n A 1 166 TYR 166 165 165 TYR TYR A . n A 1 167 ARG 167 166 166 ARG ARG A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 TYR 170 169 169 TYR TYR A . n A 1 171 ARG 171 170 170 ARG ARG A . n A 1 172 ASN 172 171 171 ASN ASN A . n A 1 173 LEU 173 172 172 LEU LEU A . n A 1 174 PRO 174 173 173 PRO PRO A . n A 1 175 TYR 175 174 174 TYR TYR A . n A 1 176 ILE 176 175 175 ILE ILE A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 THR 178 177 177 THR THR A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 LYS 180 179 179 LYS LYS A . n A 1 181 PRO 181 180 180 PRO PRO A . n A 1 182 GLU 182 181 181 GLU GLU A . n A 1 183 VAL 183 182 182 VAL VAL A . n A 1 184 TYR 184 183 183 TYR TYR A . n A 1 185 SER 185 184 ? ? ? A . n A 1 186 ASN 186 185 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 1 GOL GOL A . C 2 GOL 1 202 2 GOL GOL A . D 3 NA 1 203 1 NA NA A . E 4 ACT 1 204 1 ACT ACT A . F 5 CL 1 205 1 CL CL A . G 5 CL 1 206 2 CL CL A . H 5 CL 1 207 3 CL CL A . I 6 HOH 1 301 1 HOH HOH A . I 6 HOH 2 302 2 HOH HOH A . I 6 HOH 3 303 3 HOH HOH A . I 6 HOH 4 304 4 HOH HOH A . I 6 HOH 5 305 5 HOH HOH A . I 6 HOH 6 306 6 HOH HOH A . I 6 HOH 7 307 7 HOH HOH A . I 6 HOH 8 308 8 HOH HOH A . I 6 HOH 9 309 9 HOH HOH A . I 6 HOH 10 310 10 HOH HOH A . I 6 HOH 11 311 11 HOH HOH A . I 6 HOH 12 312 12 HOH HOH A . I 6 HOH 13 313 13 HOH HOH A . I 6 HOH 14 314 14 HOH HOH A . I 6 HOH 15 315 15 HOH HOH A . I 6 HOH 16 316 16 HOH HOH A . I 6 HOH 17 317 17 HOH HOH A . I 6 HOH 18 318 18 HOH HOH A . I 6 HOH 19 319 19 HOH HOH A . I 6 HOH 20 320 20 HOH HOH A . I 6 HOH 21 321 21 HOH HOH A . I 6 HOH 22 322 22 HOH HOH A . I 6 HOH 23 323 23 HOH HOH A . I 6 HOH 24 324 24 HOH HOH A . I 6 HOH 25 325 25 HOH HOH A . I 6 HOH 26 326 26 HOH HOH A . I 6 HOH 27 327 27 HOH HOH A . I 6 HOH 28 328 28 HOH HOH A . I 6 HOH 29 329 29 HOH HOH A . I 6 HOH 30 330 30 HOH HOH A . I 6 HOH 31 331 31 HOH HOH A . I 6 HOH 32 332 32 HOH HOH A . I 6 HOH 33 333 33 HOH HOH A . I 6 HOH 34 334 34 HOH HOH A . I 6 HOH 35 335 35 HOH HOH A . I 6 HOH 36 336 36 HOH HOH A . I 6 HOH 37 337 37 HOH HOH A . I 6 HOH 38 338 38 HOH HOH A . I 6 HOH 39 339 39 HOH HOH A . I 6 HOH 40 340 40 HOH HOH A . I 6 HOH 41 341 41 HOH HOH A . I 6 HOH 42 342 42 HOH HOH A . I 6 HOH 43 343 43 HOH HOH A . I 6 HOH 44 344 44 HOH HOH A . I 6 HOH 45 345 45 HOH HOH A . I 6 HOH 46 346 46 HOH HOH A . I 6 HOH 47 347 47 HOH HOH A . I 6 HOH 48 348 48 HOH HOH A . I 6 HOH 49 349 49 HOH HOH A . I 6 HOH 50 350 50 HOH HOH A . I 6 HOH 51 351 51 HOH HOH A . I 6 HOH 52 352 52 HOH HOH A . I 6 HOH 53 353 53 HOH HOH A . I 6 HOH 54 354 54 HOH HOH A . I 6 HOH 55 355 55 HOH HOH A . I 6 HOH 56 356 56 HOH HOH A . I 6 HOH 57 357 57 HOH HOH A . I 6 HOH 58 358 58 HOH HOH A . I 6 HOH 59 359 59 HOH HOH A . I 6 HOH 60 360 60 HOH HOH A . I 6 HOH 61 361 61 HOH HOH A . I 6 HOH 62 362 62 HOH HOH A . I 6 HOH 63 363 63 HOH HOH A . I 6 HOH 64 364 64 HOH HOH A . I 6 HOH 65 365 65 HOH HOH A . I 6 HOH 66 366 66 HOH HOH A . I 6 HOH 67 367 67 HOH HOH A . I 6 HOH 68 368 68 HOH HOH A . I 6 HOH 69 369 69 HOH HOH A . I 6 HOH 70 370 70 HOH HOH A . I 6 HOH 71 371 71 HOH HOH A . I 6 HOH 72 372 72 HOH HOH A . I 6 HOH 73 373 73 HOH HOH A . I 6 HOH 74 374 74 HOH HOH A . I 6 HOH 75 375 75 HOH HOH A . I 6 HOH 76 376 76 HOH HOH A . I 6 HOH 77 377 77 HOH HOH A . I 6 HOH 78 378 78 HOH HOH A . I 6 HOH 79 379 79 HOH HOH A . I 6 HOH 80 380 80 HOH HOH A . I 6 HOH 81 381 81 HOH HOH A . I 6 HOH 82 382 82 HOH HOH A . I 6 HOH 83 383 83 HOH HOH A . I 6 HOH 84 384 84 HOH HOH A . I 6 HOH 85 385 85 HOH HOH A . I 6 HOH 86 386 86 HOH HOH A . I 6 HOH 87 387 87 HOH HOH A . I 6 HOH 88 388 88 HOH HOH A . I 6 HOH 89 389 89 HOH HOH A . I 6 HOH 90 390 90 HOH HOH A . I 6 HOH 91 391 91 HOH HOH A . I 6 HOH 92 392 92 HOH HOH A . I 6 HOH 93 393 93 HOH HOH A . I 6 HOH 94 394 94 HOH HOH A . I 6 HOH 95 395 95 HOH HOH A . I 6 HOH 96 396 96 HOH HOH A . I 6 HOH 97 397 97 HOH HOH A . I 6 HOH 98 398 98 HOH HOH A . I 6 HOH 99 399 99 HOH HOH A . I 6 HOH 100 400 100 HOH HOH A . I 6 HOH 101 401 101 HOH HOH A . I 6 HOH 102 402 102 HOH HOH A . I 6 HOH 103 403 103 HOH HOH A . I 6 HOH 104 404 104 HOH HOH A . I 6 HOH 105 405 105 HOH HOH A . I 6 HOH 106 406 106 HOH HOH A . I 6 HOH 107 407 107 HOH HOH A . I 6 HOH 108 408 108 HOH HOH A . I 6 HOH 109 409 109 HOH HOH A . I 6 HOH 110 410 110 HOH HOH A . I 6 HOH 111 411 111 HOH HOH A . I 6 HOH 112 412 112 HOH HOH A . I 6 HOH 113 413 113 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 3 ? MET SELENOMETHIONINE 2 A MSE 8 A MSE 7 ? MET SELENOMETHIONINE 3 A MSE 53 A MSE 52 ? MET SELENOMETHIONINE 4 A MSE 55 A MSE 54 ? MET SELENOMETHIONINE 5 A MSE 71 A MSE 70 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 12650 ? 2 MORE -130 ? 2 'SSA (A^2)' 27100 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 66.1580000000 0.0000000000 -1.0000000000 0.0000000000 71.9190000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 66.1580000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 71.9190000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A GOL 201 ? B GOL . 2 1 A NA 203 ? D NA . 3 1 A HOH 347 ? I HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OD1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id ASP _pdbx_struct_conn_angle.ptnr1_label_seq_id 57 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr1_auth_seq_id 56 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 203 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OG _pdbx_struct_conn_angle.ptnr3_label_alt_id B _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id SER _pdbx_struct_conn_angle.ptnr3_label_seq_id 56 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id SER _pdbx_struct_conn_angle.ptnr3_auth_seq_id 55 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 104.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-26 2 'Structure model' 1 1 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.900 _diffrn_reflns.pdbx_d_res_low 20.000 _diffrn_reflns.pdbx_number_obs 36864 _diffrn_reflns.pdbx_Rmerge_I_obs 0.094 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.27 _diffrn_reflns.pdbx_redundancy 4.10 _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_percent_possible_obs 99.10 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 152216 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.13 20.00 ? ? 0.074 ? 1.064 4.30 ? 1 4.08 5.13 ? ? 0.049 ? 1.101 3.80 ? 1 3.57 4.08 ? ? 0.056 ? 1.033 3.90 ? 1 3.25 3.57 ? ? 0.067 ? 1.054 4.00 ? 1 3.01 3.25 ? ? 0.076 ? 1.129 4.10 ? 1 2.84 3.01 ? ? 0.087 ? 1.016 4.20 ? 1 2.69 2.84 ? ? 0.109 ? 1.112 4.20 ? 1 2.58 2.69 ? ? 0.135 ? 1.185 4.20 ? 1 2.48 2.58 ? ? 0.153 ? 1.277 4.20 ? 1 2.39 2.48 ? ? 0.178 ? 1.273 4.20 ? 1 2.32 2.39 ? ? 0.203 ? 1.322 4.20 ? 1 2.25 2.32 ? ? 0.231 ? 1.389 4.20 ? 1 2.19 2.25 ? ? 0.275 ? 1.479 4.20 ? 1 2.14 2.19 ? ? 0.313 ? 1.432 4.20 ? 1 2.09 2.14 ? ? 0.361 ? 1.457 4.20 ? 1 2.05 2.09 ? ? 0.429 ? 1.427 4.10 ? 1 2.01 2.05 ? ? 0.486 ? 1.432 4.10 ? 1 1.97 2.01 ? ? 0.542 ? 1.452 4.10 ? 1 1.93 1.97 ? ? 0.608 ? 1.377 4.10 ? 1 1.90 1.93 ? ? 0.856 ? 1.371 4.10 ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.8.0073 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.15 'July. 29, 2014' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL2Map . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 325 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 406 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.94 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 406 ? ? 1_555 O A HOH 406 ? ? 3_655 1.65 2 1 O A ILE 88 ? ? 1_555 O A HOH 406 ? ? 3_655 1.97 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 96 ? ? OE1 A GLU 96 ? ? 1.327 1.252 0.075 0.011 N 2 1 C A LYS 179 ? ? O A LYS 179 ? ? 1.386 1.229 0.157 0.019 N 3 1 CG A GLU 181 ? ? CD A GLU 181 ? ? 1.620 1.515 0.105 0.015 N 4 1 CD A GLU 181 ? ? OE2 A GLU 181 ? ? 1.475 1.252 0.223 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A MSE 7 ? ? SE A MSE 7 ? ? CE A MSE 7 ? ? 116.78 98.90 17.88 2.20 N 2 1 CG A MSE 52 ? B SE A MSE 52 ? B CE A MSE 52 ? B 122.38 98.90 23.48 2.20 N 3 1 CA A MSE 54 ? ? C A MSE 54 ? ? O A MSE 54 ? ? 139.45 120.10 19.35 2.10 N 4 1 CA A MSE 54 ? ? C A MSE 54 ? ? N A SER 55 ? ? 101.01 117.20 -16.19 2.20 Y 5 1 OE1 A GLU 181 ? ? CD A GLU 181 ? ? OE2 A GLU 181 ? ? 113.83 123.30 -9.47 1.20 N 6 1 CG A GLU 181 ? ? CD A GLU 181 ? ? OE1 A GLU 181 ? ? 130.85 118.30 12.55 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 62 ? ? -96.49 57.05 2 1 GLU A 108 ? ? -123.65 -101.78 3 1 LYS A 136 ? ? -116.58 78.41 4 1 GLU A 167 ? ? 76.53 -8.21 5 1 TYR A 169 ? ? 81.84 -3.67 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LYS _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 179 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -14.83 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id GLU _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 181 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.084 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 0 ? A SER 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A GLU 2 ? A GLU 3 4 1 Y 1 A HIS 76 ? A HIS 77 5 1 Y 1 A GLY 77 ? A GLY 78 6 1 Y 1 A GLY 78 ? A GLY 79 7 1 Y 1 A THR 79 ? A THR 80 8 1 Y 1 A GLU 80 ? A GLU 81 9 1 Y 1 A SER 184 ? A SER 185 10 1 Y 1 A ASN 185 ? A ASN 186 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SODIUM ION' NA 4 'ACETATE ION' ACT 5 'CHLORIDE ION' CL 6 water HOH #