data_4RVF # _entry.id 4RVF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RVF RCSB RCSB087843 WWPDB D_1000087843 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 1RV9 PDB 'same protein in complex with SAH' unspecified 4RVD PDB 'same protein in complex with SAM' unspecified 4RVG PDB 'same protein in complex with SAM and TDP' unspecified 4RVH PDB 'same protein in complex with SAH and substrate' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RVF _pdbx_database_status.recvd_initial_deposition_date 2014-11-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsodikov, O.V.' 1 'Hou, C.' 2 'Chen, J.-M.' 3 'Rohr, J.' 4 # _citation.id primary _citation.title ;Structural Insight into MtmC, a Bifunctional Ketoreductase-Methyltransferase Involved in the Assembly of the Mithramycin Trisaccharide Chain. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 54 _citation.page_first 2481 _citation.page_last 2489 _citation.year 2015 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25587924 _citation.pdbx_database_id_DOI 10.1021/bi501462g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, J.M.' 1 primary 'Hou, C.' 2 primary 'Wang, G.' 3 primary 'Tsodikov, O.V.' 4 primary 'Rohr, J.' 5 # _cell.entry_id 4RVF _cell.length_a 134.214 _cell.length_b 134.214 _cell.length_c 132.293 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RVF _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'D-mycarose 3-C-methyltransferase' 46941.160 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn "THYMIDINE-5'-DIPHOSPHATE" 402.188 1 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MDIYGTARAVTTCRMCGAQDWQEVVDFGPVPLADSFLEPAASYDDEPRYPLAVVSCRSCRLMSLTHVVDPEVLYRTYPYT TSDSETIKKHMGHVVAVCVERFGIPEGSFVLEIGSNTGSQLKAFQNAGMRTLGIDPARNIAAVANERGIETLPEFFSVDT AALVKKTHGTPQLVLGRHVFAHIDDVSAVAEGVRDLLGPDSLFAIEVPYLVDMLERNEFDTIYHEHLSYIGVGSLVALFR RHGLRVVDVERLAVHGGSILVFVGLDEGTRATAPVVEELIALEKERGLYEDATYERFARHVAEITAELTSMVRSLRAEGK RIAGYGAPAKGNTLLNVCGLTADDLEFC(CSO)DTTEFKQGLVLPGTHIPVRSPEYAKTQAIDYYLLLAWNYGEEILAKE GPFLADGGRFILPNPRPSIVPPGEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MDIYGTARAVTTCRMCGAQDWQEVVDFGPVPLADSFLEPAASYDDEPRYPLAVVSCRSCRLMSLTHVVDPEVLYRTYPYT TSDSETIKKHMGHVVAVCVERFGIPEGSFVLEIGSNTGSQLKAFQNAGMRTLGIDPARNIAAVANERGIETLPEFFSVDT AALVKKTHGTPQLVLGRHVFAHIDDVSAVAEGVRDLLGPDSLFAIEVPYLVDMLERNEFDTIYHEHLSYIGVGSLVALFR RHGLRVVDVERLAVHGGSILVFVGLDEGTRATAPVVEELIALEKERGLYEDATYERFARHVAEITAELTSMVRSLRAEGK RIAGYGAPAKGNTLLNVCGLTADDLEFCCDTTEFKQGLVLPGTHIPVRSPEYAKTQAIDYYLLLAWNYGEEILAKEGPFL ADGGRFILPNPRPSIVPPGEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ILE n 1 4 TYR n 1 5 GLY n 1 6 THR n 1 7 ALA n 1 8 ARG n 1 9 ALA n 1 10 VAL n 1 11 THR n 1 12 THR n 1 13 CYS n 1 14 ARG n 1 15 MET n 1 16 CYS n 1 17 GLY n 1 18 ALA n 1 19 GLN n 1 20 ASP n 1 21 TRP n 1 22 GLN n 1 23 GLU n 1 24 VAL n 1 25 VAL n 1 26 ASP n 1 27 PHE n 1 28 GLY n 1 29 PRO n 1 30 VAL n 1 31 PRO n 1 32 LEU n 1 33 ALA n 1 34 ASP n 1 35 SER n 1 36 PHE n 1 37 LEU n 1 38 GLU n 1 39 PRO n 1 40 ALA n 1 41 ALA n 1 42 SER n 1 43 TYR n 1 44 ASP n 1 45 ASP n 1 46 GLU n 1 47 PRO n 1 48 ARG n 1 49 TYR n 1 50 PRO n 1 51 LEU n 1 52 ALA n 1 53 VAL n 1 54 VAL n 1 55 SER n 1 56 CYS n 1 57 ARG n 1 58 SER n 1 59 CYS n 1 60 ARG n 1 61 LEU n 1 62 MET n 1 63 SER n 1 64 LEU n 1 65 THR n 1 66 HIS n 1 67 VAL n 1 68 VAL n 1 69 ASP n 1 70 PRO n 1 71 GLU n 1 72 VAL n 1 73 LEU n 1 74 TYR n 1 75 ARG n 1 76 THR n 1 77 TYR n 1 78 PRO n 1 79 TYR n 1 80 THR n 1 81 THR n 1 82 SER n 1 83 ASP n 1 84 SER n 1 85 GLU n 1 86 THR n 1 87 ILE n 1 88 LYS n 1 89 LYS n 1 90 HIS n 1 91 MET n 1 92 GLY n 1 93 HIS n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 VAL n 1 98 CYS n 1 99 VAL n 1 100 GLU n 1 101 ARG n 1 102 PHE n 1 103 GLY n 1 104 ILE n 1 105 PRO n 1 106 GLU n 1 107 GLY n 1 108 SER n 1 109 PHE n 1 110 VAL n 1 111 LEU n 1 112 GLU n 1 113 ILE n 1 114 GLY n 1 115 SER n 1 116 ASN n 1 117 THR n 1 118 GLY n 1 119 SER n 1 120 GLN n 1 121 LEU n 1 122 LYS n 1 123 ALA n 1 124 PHE n 1 125 GLN n 1 126 ASN n 1 127 ALA n 1 128 GLY n 1 129 MET n 1 130 ARG n 1 131 THR n 1 132 LEU n 1 133 GLY n 1 134 ILE n 1 135 ASP n 1 136 PRO n 1 137 ALA n 1 138 ARG n 1 139 ASN n 1 140 ILE n 1 141 ALA n 1 142 ALA n 1 143 VAL n 1 144 ALA n 1 145 ASN n 1 146 GLU n 1 147 ARG n 1 148 GLY n 1 149 ILE n 1 150 GLU n 1 151 THR n 1 152 LEU n 1 153 PRO n 1 154 GLU n 1 155 PHE n 1 156 PHE n 1 157 SER n 1 158 VAL n 1 159 ASP n 1 160 THR n 1 161 ALA n 1 162 ALA n 1 163 LEU n 1 164 VAL n 1 165 LYS n 1 166 LYS n 1 167 THR n 1 168 HIS n 1 169 GLY n 1 170 THR n 1 171 PRO n 1 172 GLN n 1 173 LEU n 1 174 VAL n 1 175 LEU n 1 176 GLY n 1 177 ARG n 1 178 HIS n 1 179 VAL n 1 180 PHE n 1 181 ALA n 1 182 HIS n 1 183 ILE n 1 184 ASP n 1 185 ASP n 1 186 VAL n 1 187 SER n 1 188 ALA n 1 189 VAL n 1 190 ALA n 1 191 GLU n 1 192 GLY n 1 193 VAL n 1 194 ARG n 1 195 ASP n 1 196 LEU n 1 197 LEU n 1 198 GLY n 1 199 PRO n 1 200 ASP n 1 201 SER n 1 202 LEU n 1 203 PHE n 1 204 ALA n 1 205 ILE n 1 206 GLU n 1 207 VAL n 1 208 PRO n 1 209 TYR n 1 210 LEU n 1 211 VAL n 1 212 ASP n 1 213 MET n 1 214 LEU n 1 215 GLU n 1 216 ARG n 1 217 ASN n 1 218 GLU n 1 219 PHE n 1 220 ASP n 1 221 THR n 1 222 ILE n 1 223 TYR n 1 224 HIS n 1 225 GLU n 1 226 HIS n 1 227 LEU n 1 228 SER n 1 229 TYR n 1 230 ILE n 1 231 GLY n 1 232 VAL n 1 233 GLY n 1 234 SER n 1 235 LEU n 1 236 VAL n 1 237 ALA n 1 238 LEU n 1 239 PHE n 1 240 ARG n 1 241 ARG n 1 242 HIS n 1 243 GLY n 1 244 LEU n 1 245 ARG n 1 246 VAL n 1 247 VAL n 1 248 ASP n 1 249 VAL n 1 250 GLU n 1 251 ARG n 1 252 LEU n 1 253 ALA n 1 254 VAL n 1 255 HIS n 1 256 GLY n 1 257 GLY n 1 258 SER n 1 259 ILE n 1 260 LEU n 1 261 VAL n 1 262 PHE n 1 263 VAL n 1 264 GLY n 1 265 LEU n 1 266 ASP n 1 267 GLU n 1 268 GLY n 1 269 THR n 1 270 ARG n 1 271 ALA n 1 272 THR n 1 273 ALA n 1 274 PRO n 1 275 VAL n 1 276 VAL n 1 277 GLU n 1 278 GLU n 1 279 LEU n 1 280 ILE n 1 281 ALA n 1 282 LEU n 1 283 GLU n 1 284 LYS n 1 285 GLU n 1 286 ARG n 1 287 GLY n 1 288 LEU n 1 289 TYR n 1 290 GLU n 1 291 ASP n 1 292 ALA n 1 293 THR n 1 294 TYR n 1 295 GLU n 1 296 ARG n 1 297 PHE n 1 298 ALA n 1 299 ARG n 1 300 HIS n 1 301 VAL n 1 302 ALA n 1 303 GLU n 1 304 ILE n 1 305 THR n 1 306 ALA n 1 307 GLU n 1 308 LEU n 1 309 THR n 1 310 SER n 1 311 MET n 1 312 VAL n 1 313 ARG n 1 314 SER n 1 315 LEU n 1 316 ARG n 1 317 ALA n 1 318 GLU n 1 319 GLY n 1 320 LYS n 1 321 ARG n 1 322 ILE n 1 323 ALA n 1 324 GLY n 1 325 TYR n 1 326 GLY n 1 327 ALA n 1 328 PRO n 1 329 ALA n 1 330 LYS n 1 331 GLY n 1 332 ASN n 1 333 THR n 1 334 LEU n 1 335 LEU n 1 336 ASN n 1 337 VAL n 1 338 CYS n 1 339 GLY n 1 340 LEU n 1 341 THR n 1 342 ALA n 1 343 ASP n 1 344 ASP n 1 345 LEU n 1 346 GLU n 1 347 PHE n 1 348 CYS n 1 349 CSO n 1 350 ASP n 1 351 THR n 1 352 THR n 1 353 GLU n 1 354 PHE n 1 355 LYS n 1 356 GLN n 1 357 GLY n 1 358 LEU n 1 359 VAL n 1 360 LEU n 1 361 PRO n 1 362 GLY n 1 363 THR n 1 364 HIS n 1 365 ILE n 1 366 PRO n 1 367 VAL n 1 368 ARG n 1 369 SER n 1 370 PRO n 1 371 GLU n 1 372 TYR n 1 373 ALA n 1 374 LYS n 1 375 THR n 1 376 GLN n 1 377 ALA n 1 378 ILE n 1 379 ASP n 1 380 TYR n 1 381 TYR n 1 382 LEU n 1 383 LEU n 1 384 LEU n 1 385 ALA n 1 386 TRP n 1 387 ASN n 1 388 TYR n 1 389 GLY n 1 390 GLU n 1 391 GLU n 1 392 ILE n 1 393 LEU n 1 394 ALA n 1 395 LYS n 1 396 GLU n 1 397 GLY n 1 398 PRO n 1 399 PHE n 1 400 LEU n 1 401 ALA n 1 402 ASP n 1 403 GLY n 1 404 GLY n 1 405 ARG n 1 406 PHE n 1 407 ILE n 1 408 LEU n 1 409 PRO n 1 410 ASN n 1 411 PRO n 1 412 ARG n 1 413 PRO n 1 414 SER n 1 415 ILE n 1 416 VAL n 1 417 PRO n 1 418 PRO n 1 419 GLY n 1 420 GLU n 1 421 HIS n 1 422 HIS n 1 423 HIS n 1 424 HIS n 1 425 HIS n 1 426 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene mtmC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces argillaceus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 41951 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q194Q4_STRAA _struct_ref.pdbx_db_accession Q194Q4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDIYGTARAVTTCPMCGAQDWQEVVDFGPVPLADSFLEPAASYDDEPRYPLAVVSCASCRLMSLTHVVDPEVLYRTYPYT TSDSETIKKHMGHVVAGVRPSASASPEGSFVLEIGSNTGSQLKAFQNAGMRTLGIDPARNIAAVANERGIETLPEFFSVD TAALVKKTHGTPQLVLGRHVFAHIDDVSAVAEGVRDLLGPDSLFAIEVPYLVDMLERNEFDTIYHEHLSYIGVGSLVALF RRHGLRVVDVERLAVHGGSILVFVGLDEGTRATAPVVEELIALEKERGLYEDATYERFARHVAEITAELTSMVRSLRAEG KRIAGYGAPAKGNTLLNVCGLTADDLEFCCDTTEFKQGLVLPGTHIPVRSPEYAKTQAIDYYLLLAWNYGEEILAKEGPF LADGGRFILPNPRPSIVPPGE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RVF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 420 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q194Q4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 421 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 420 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RVF ARG A 14 ? UNP Q194Q4 PRO 14 CONFLICT 14 1 1 4RVF ARG A 57 ? UNP Q194Q4 ALA 57 CONFLICT 57 2 1 4RVF ? A ? ? UNP Q194Q4 GLY 97 DELETION ? 3 1 4RVF CYS A 98 ? UNP Q194Q4 ARG 99 CONFLICT 98 4 1 4RVF VAL A 99 ? UNP Q194Q4 PRO 100 CONFLICT 99 5 1 4RVF GLU A 100 ? UNP Q194Q4 SER 101 CONFLICT 100 6 1 4RVF ARG A 101 ? UNP Q194Q4 ALA 102 CONFLICT 101 7 1 4RVF PHE A 102 ? UNP Q194Q4 SER 103 CONFLICT 102 8 1 4RVF GLY A 103 ? UNP Q194Q4 ALA 104 CONFLICT 103 9 1 4RVF ILE A 104 ? UNP Q194Q4 SER 105 CONFLICT 104 10 1 4RVF HIS A 421 ? UNP Q194Q4 ? ? 'EXPRESSION TAG' 421 11 1 4RVF HIS A 422 ? UNP Q194Q4 ? ? 'EXPRESSION TAG' 422 12 1 4RVF HIS A 423 ? UNP Q194Q4 ? ? 'EXPRESSION TAG' 423 13 1 4RVF HIS A 424 ? UNP Q194Q4 ? ? 'EXPRESSION TAG' 424 14 1 4RVF HIS A 425 ? UNP Q194Q4 ? ? 'EXPRESSION TAG' 425 15 1 4RVF HIS A 426 ? UNP Q194Q4 ? ? 'EXPRESSION TAG' 426 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYD non-polymer . "THYMIDINE-5'-DIPHOSPHATE" ? 'C10 H16 N2 O11 P2' 402.188 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4RVF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_percent_sol 61.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M MES, pH 5.5, 0.2 M ammonium acetate, 16% PEG 4000, 1 mM TDP, VAPOR DIFFUSION, HANGING DROP, temperature 295K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX300HS' _diffrn_detector.pdbx_collection_date 2014-06-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RVF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.7 _reflns.number_obs 16056 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RVF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16056 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 99.90 _refine.ls_R_factor_obs 0.20992 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20797 _refine.ls_R_factor_R_free 0.24688 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 855 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 60.047 _refine.aniso_B[1][1] -1.79 _refine.aniso_B[2][2] -1.79 _refine.aniso_B[3][3] 3.58 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.597 _refine.pdbx_overall_ESU_R_Free 0.306 _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3232 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 3266 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.019 ? 3336 'X-RAY DIFFRACTION' ? r_bond_other_d 0.000 0.020 ? 3149 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.973 1.977 ? 4544 'X-RAY DIFFRACTION' ? r_angle_other_deg 3.661 3.001 ? 7235 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.448 5.000 ? 417 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.840 23.087 ? 149 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.137 15.000 ? 521 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.888 15.000 ? 27 'X-RAY DIFFRACTION' ? r_chiral_restr 0.055 0.200 ? 514 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 3761 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 752 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.469 5.940 ? 1671 'X-RAY DIFFRACTION' ? r_mcbond_other 1.469 5.939 ? 1670 'X-RAY DIFFRACTION' ? r_mcangle_it 2.527 8.906 ? 2087 'X-RAY DIFFRACTION' ? r_mcangle_other 2.526 8.907 ? 2088 'X-RAY DIFFRACTION' ? r_scbond_it 1.548 6.235 ? 1665 'X-RAY DIFFRACTION' ? r_scbond_other 1.520 6.226 ? 1657 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 2.667 9.273 ? 2443 'X-RAY DIFFRACTION' ? r_long_range_B_refined 4.748 47.608 ? 3570 'X-RAY DIFFRACTION' ? r_long_range_B_other 4.743 47.580 ? 3567 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.770 _refine_ls_shell.number_reflns_R_work 1158 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.376 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4RVF _struct.title 'Crystal structure of MtmC in complex with TDP' _struct.pdbx_descriptor 'D-mycarose 3-C-methyltransferase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RVF _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'C-methyltransferase, TDP-4-keto-D-olivose, SAM, Transferase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 69 ? TYR A 74 ? ASP A 69 TYR A 74 1 ? 6 HELX_P HELX_P2 2 SER A 84 ? PHE A 102 ? SER A 84 PHE A 102 1 ? 19 HELX_P HELX_P3 3 GLY A 118 ? ALA A 127 ? GLY A 118 ALA A 127 1 ? 10 HELX_P HELX_P4 4 ALA A 137 ? GLY A 148 ? ALA A 137 GLY A 148 1 ? 12 HELX_P HELX_P5 5 SER A 157 ? GLY A 169 ? SER A 157 GLY A 169 1 ? 13 HELX_P HELX_P6 6 HIS A 178 ? ILE A 183 ? HIS A 178 ILE A 183 1 ? 6 HELX_P HELX_P7 7 ASP A 185 ? LEU A 197 ? ASP A 185 LEU A 197 1 ? 13 HELX_P HELX_P8 8 TYR A 209 ? ARG A 216 ? TYR A 209 ARG A 216 1 ? 8 HELX_P HELX_P9 9 GLU A 218 ? ILE A 222 ? GLU A 218 ILE A 222 5 ? 5 HELX_P HELX_P10 10 GLY A 231 ? ARG A 241 ? GLY A 231 ARG A 241 1 ? 11 HELX_P HELX_P11 11 ALA A 253 ? GLY A 256 ? ALA A 253 GLY A 256 5 ? 4 HELX_P HELX_P12 12 PRO A 274 ? ARG A 286 ? PRO A 274 ARG A 286 1 ? 13 HELX_P HELX_P13 13 GLU A 290 ? GLU A 318 ? GLU A 290 GLU A 318 1 ? 29 HELX_P HELX_P14 14 PRO A 328 ? GLY A 339 ? PRO A 328 GLY A 339 1 ? 12 HELX_P HELX_P15 15 SER A 369 ? LYS A 374 ? SER A 369 LYS A 374 1 ? 6 HELX_P HELX_P16 16 ALA A 385 ? ASN A 387 ? ALA A 385 ASN A 387 5 ? 3 HELX_P HELX_P17 17 TYR A 388 ? GLU A 396 ? TYR A 388 GLU A 396 1 ? 9 HELX_P HELX_P18 18 GLU A 396 ? ASP A 402 ? GLU A 396 ASP A 402 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A CYS 348 C ? ? ? 1_555 A CSO 349 N ? ? A CYS 348 A CSO 349 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A CSO 349 C ? ? ? 1_555 A ASP 350 N ? ? A CSO 349 A ASP 350 1_555 ? ? ? ? ? ? ? 1.331 ? metalc1 metalc ? ? A CYS 13 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 13 A ZN 501 1_555 ? ? ? ? ? ? ? 2.330 ? metalc2 metalc ? ? A CYS 59 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 59 A ZN 501 1_555 ? ? ? ? ? ? ? 2.335 ? metalc3 metalc ? ? A CYS 56 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 56 A ZN 501 1_555 ? ? ? ? ? ? ? 2.337 ? metalc4 metalc ? ? A CYS 16 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 16 A ZN 501 1_555 ? ? ? ? ? ? ? 2.342 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 410 A . ? ASN 410 A PRO 411 A ? PRO 411 A 1 -1.92 2 VAL 416 A . ? VAL 416 A PRO 417 A ? PRO 417 A 1 -0.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? C ? 7 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? parallel D 2 3 ? parallel D 3 4 ? parallel D 4 5 ? parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 8 ? ALA A 9 ? ARG A 8 ALA A 9 A 2 HIS A 66 ? VAL A 67 ? HIS A 66 VAL A 67 B 1 TRP A 21 ? VAL A 30 ? TRP A 21 VAL A 30 B 2 TYR A 49 ? CYS A 56 ? TYR A 49 CYS A 56 B 3 MET A 62 ? LEU A 64 ? MET A 62 LEU A 64 B 4 SER A 228 ? TYR A 229 ? SER A 228 TYR A 229 C 1 THR A 151 ? LEU A 152 ? THR A 151 LEU A 152 C 2 ARG A 130 ? ILE A 134 ? ARG A 130 ILE A 134 C 3 PHE A 109 ? ILE A 113 ? PHE A 109 ILE A 113 C 4 LEU A 173 ? ARG A 177 ? LEU A 173 ARG A 177 C 5 LEU A 202 ? PRO A 208 ? LEU A 202 PRO A 208 C 6 SER A 258 ? LEU A 265 ? SER A 258 LEU A 265 C 7 LEU A 244 ? LEU A 252 ? LEU A 244 LEU A 252 D 1 VAL A 367 ? ARG A 368 ? VAL A 367 ARG A 368 D 2 CYS A 348 ? CSO A 349 ? CYS A 348 CSO A 349 D 3 ILE A 322 ? TYR A 325 ? ILE A 322 TYR A 325 D 4 TYR A 380 ? LEU A 383 ? TYR A 380 LEU A 383 D 5 ARG A 405 ? LEU A 408 ? ARG A 405 LEU A 408 D 6 SER A 414 ? VAL A 416 ? SER A 414 VAL A 416 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 8 ? N ARG A 8 O VAL A 67 ? O VAL A 67 B 1 2 N GLY A 28 ? N GLY A 28 O LEU A 51 ? O LEU A 51 B 2 3 N VAL A 54 ? N VAL A 54 O SER A 63 ? O SER A 63 B 3 4 N MET A 62 ? N MET A 62 O TYR A 229 ? O TYR A 229 C 1 2 O LEU A 152 ? O LEU A 152 N GLY A 133 ? N GLY A 133 C 2 3 O ARG A 130 ? O ARG A 130 N VAL A 110 ? N VAL A 110 C 3 4 N ILE A 113 ? N ILE A 113 O LEU A 175 ? O LEU A 175 C 4 5 N VAL A 174 ? N VAL A 174 O ALA A 204 ? O ALA A 204 C 5 6 N PHE A 203 ? N PHE A 203 O VAL A 263 ? O VAL A 263 C 6 7 O SER A 258 ? O SER A 258 N LEU A 252 ? N LEU A 252 D 1 2 O ARG A 368 ? O ARG A 368 N CYS A 348 ? N CYS A 348 D 2 3 O CSO A 349 ? O CSO A 349 N GLY A 324 ? N GLY A 324 D 3 4 N ALA A 323 ? N ALA A 323 O LEU A 382 ? O LEU A 382 D 4 5 N TYR A 381 ? N TYR A 381 O ILE A 407 ? O ILE A 407 D 5 6 N PHE A 406 ? N PHE A 406 O VAL A 416 ? O VAL A 416 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE TYD A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 13 ? CYS A 13 . ? 1_555 ? 2 AC1 4 CYS A 16 ? CYS A 16 . ? 1_555 ? 3 AC1 4 CYS A 56 ? CYS A 56 . ? 1_555 ? 4 AC1 4 CYS A 59 ? CYS A 59 . ? 1_555 ? 5 AC2 11 HIS A 255 ? HIS A 255 . ? 1_555 ? 6 AC2 11 PRO A 328 ? PRO A 328 . ? 1_555 ? 7 AC2 11 ALA A 329 ? ALA A 329 . ? 1_555 ? 8 AC2 11 LYS A 330 ? LYS A 330 . ? 1_555 ? 9 AC2 11 ASP A 350 ? ASP A 350 . ? 1_555 ? 10 AC2 11 THR A 351 ? THR A 351 . ? 1_555 ? 11 AC2 11 THR A 352 ? THR A 352 . ? 1_555 ? 12 AC2 11 LYS A 355 ? LYS A 355 . ? 1_555 ? 13 AC2 11 ASN A 387 ? ASN A 387 . ? 1_555 ? 14 AC2 11 TYR A 388 ? TYR A 388 . ? 1_555 ? 15 AC2 11 LYS A 395 ? LYS A 395 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RVF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RVF _atom_sites.fract_transf_matrix[1][1] 0.007451 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007451 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007559 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 ILE 3 3 ? ? ? A . n A 1 4 TYR 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 TRP 21 21 21 TRP TRP A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 MET 129 129 129 MET MET A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 PRO 153 153 153 PRO PRO A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 HIS 178 178 178 HIS HIS A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 HIS 182 182 182 HIS HIS A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 ASP 184 184 184 ASP ASP A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 PRO 199 199 199 PRO PRO A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 PRO 208 208 208 PRO PRO A . n A 1 209 TYR 209 209 209 TYR TYR A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 MET 213 213 213 MET MET A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 GLU 215 215 215 GLU GLU A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 ASP 220 220 220 ASP ASP A . n A 1 221 THR 221 221 221 THR THR A . n A 1 222 ILE 222 222 222 ILE ILE A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 HIS 224 224 224 HIS HIS A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 HIS 226 226 226 HIS HIS A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 TYR 229 229 229 TYR TYR A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 VAL 236 236 236 VAL VAL A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 LEU 238 238 238 LEU LEU A . n A 1 239 PHE 239 239 239 PHE PHE A . n A 1 240 ARG 240 240 240 ARG ARG A . n A 1 241 ARG 241 241 241 ARG ARG A . n A 1 242 HIS 242 242 242 HIS HIS A . n A 1 243 GLY 243 243 243 GLY GLY A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 ARG 245 245 245 ARG ARG A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 ARG 251 251 251 ARG ARG A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 HIS 255 255 255 HIS HIS A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 SER 258 258 258 SER SER A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 PHE 262 262 262 PHE PHE A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 ASP 266 266 266 ASP ASP A . n A 1 267 GLU 267 267 267 GLU GLU A . n A 1 268 GLY 268 268 268 GLY GLY A . n A 1 269 THR 269 269 269 THR THR A . n A 1 270 ARG 270 270 270 ARG ARG A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 THR 272 272 272 THR THR A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 PRO 274 274 274 PRO PRO A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 VAL 276 276 276 VAL VAL A . n A 1 277 GLU 277 277 277 GLU GLU A . n A 1 278 GLU 278 278 278 GLU GLU A . n A 1 279 LEU 279 279 279 LEU LEU A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 GLU 283 283 283 GLU GLU A . n A 1 284 LYS 284 284 284 LYS LYS A . n A 1 285 GLU 285 285 285 GLU GLU A . n A 1 286 ARG 286 286 286 ARG ARG A . n A 1 287 GLY 287 287 287 GLY GLY A . n A 1 288 LEU 288 288 288 LEU LEU A . n A 1 289 TYR 289 289 289 TYR TYR A . n A 1 290 GLU 290 290 290 GLU GLU A . n A 1 291 ASP 291 291 291 ASP ASP A . n A 1 292 ALA 292 292 292 ALA ALA A . n A 1 293 THR 293 293 293 THR THR A . n A 1 294 TYR 294 294 294 TYR TYR A . n A 1 295 GLU 295 295 295 GLU GLU A . n A 1 296 ARG 296 296 296 ARG ARG A . n A 1 297 PHE 297 297 297 PHE PHE A . n A 1 298 ALA 298 298 298 ALA ALA A . n A 1 299 ARG 299 299 299 ARG ARG A . n A 1 300 HIS 300 300 300 HIS HIS A . n A 1 301 VAL 301 301 301 VAL VAL A . n A 1 302 ALA 302 302 302 ALA ALA A . n A 1 303 GLU 303 303 303 GLU GLU A . n A 1 304 ILE 304 304 304 ILE ILE A . n A 1 305 THR 305 305 305 THR THR A . n A 1 306 ALA 306 306 306 ALA ALA A . n A 1 307 GLU 307 307 307 GLU GLU A . n A 1 308 LEU 308 308 308 LEU LEU A . n A 1 309 THR 309 309 309 THR THR A . n A 1 310 SER 310 310 310 SER SER A . n A 1 311 MET 311 311 311 MET MET A . n A 1 312 VAL 312 312 312 VAL VAL A . n A 1 313 ARG 313 313 313 ARG ARG A . n A 1 314 SER 314 314 314 SER SER A . n A 1 315 LEU 315 315 315 LEU LEU A . n A 1 316 ARG 316 316 316 ARG ARG A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 GLU 318 318 318 GLU GLU A . n A 1 319 GLY 319 319 319 GLY GLY A . n A 1 320 LYS 320 320 320 LYS LYS A . n A 1 321 ARG 321 321 321 ARG ARG A . n A 1 322 ILE 322 322 322 ILE ILE A . n A 1 323 ALA 323 323 323 ALA ALA A . n A 1 324 GLY 324 324 324 GLY GLY A . n A 1 325 TYR 325 325 325 TYR TYR A . n A 1 326 GLY 326 326 326 GLY GLY A . n A 1 327 ALA 327 327 327 ALA ALA A . n A 1 328 PRO 328 328 328 PRO PRO A . n A 1 329 ALA 329 329 329 ALA ALA A . n A 1 330 LYS 330 330 330 LYS LYS A . n A 1 331 GLY 331 331 331 GLY GLY A . n A 1 332 ASN 332 332 332 ASN ASN A . n A 1 333 THR 333 333 333 THR THR A . n A 1 334 LEU 334 334 334 LEU LEU A . n A 1 335 LEU 335 335 335 LEU LEU A . n A 1 336 ASN 336 336 336 ASN ASN A . n A 1 337 VAL 337 337 337 VAL VAL A . n A 1 338 CYS 338 338 338 CYS CYS A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 LEU 340 340 340 LEU LEU A . n A 1 341 THR 341 341 341 THR THR A . n A 1 342 ALA 342 342 342 ALA ALA A . n A 1 343 ASP 343 343 343 ASP ASP A . n A 1 344 ASP 344 344 344 ASP ASP A . n A 1 345 LEU 345 345 345 LEU LEU A . n A 1 346 GLU 346 346 346 GLU GLU A . n A 1 347 PHE 347 347 347 PHE PHE A . n A 1 348 CYS 348 348 348 CYS CYS A . n A 1 349 CSO 349 349 349 CSO CSO A . n A 1 350 ASP 350 350 350 ASP ASP A . n A 1 351 THR 351 351 351 THR THR A . n A 1 352 THR 352 352 352 THR THR A . n A 1 353 GLU 353 353 353 GLU GLU A . n A 1 354 PHE 354 354 354 PHE PHE A . n A 1 355 LYS 355 355 355 LYS LYS A . n A 1 356 GLN 356 356 356 GLN GLN A . n A 1 357 GLY 357 357 357 GLY GLY A . n A 1 358 LEU 358 358 358 LEU LEU A . n A 1 359 VAL 359 359 359 VAL VAL A . n A 1 360 LEU 360 360 360 LEU LEU A . n A 1 361 PRO 361 361 361 PRO PRO A . n A 1 362 GLY 362 362 362 GLY GLY A . n A 1 363 THR 363 363 363 THR THR A . n A 1 364 HIS 364 364 364 HIS HIS A . n A 1 365 ILE 365 365 365 ILE ILE A . n A 1 366 PRO 366 366 366 PRO PRO A . n A 1 367 VAL 367 367 367 VAL VAL A . n A 1 368 ARG 368 368 368 ARG ARG A . n A 1 369 SER 369 369 369 SER SER A . n A 1 370 PRO 370 370 370 PRO PRO A . n A 1 371 GLU 371 371 371 GLU GLU A . n A 1 372 TYR 372 372 372 TYR TYR A . n A 1 373 ALA 373 373 373 ALA ALA A . n A 1 374 LYS 374 374 374 LYS LYS A . n A 1 375 THR 375 375 375 THR THR A . n A 1 376 GLN 376 376 376 GLN GLN A . n A 1 377 ALA 377 377 377 ALA ALA A . n A 1 378 ILE 378 378 378 ILE ILE A . n A 1 379 ASP 379 379 379 ASP ASP A . n A 1 380 TYR 380 380 380 TYR TYR A . n A 1 381 TYR 381 381 381 TYR TYR A . n A 1 382 LEU 382 382 382 LEU LEU A . n A 1 383 LEU 383 383 383 LEU LEU A . n A 1 384 LEU 384 384 384 LEU LEU A . n A 1 385 ALA 385 385 385 ALA ALA A . n A 1 386 TRP 386 386 386 TRP TRP A . n A 1 387 ASN 387 387 387 ASN ASN A . n A 1 388 TYR 388 388 388 TYR TYR A . n A 1 389 GLY 389 389 389 GLY GLY A . n A 1 390 GLU 390 390 390 GLU GLU A . n A 1 391 GLU 391 391 391 GLU GLU A . n A 1 392 ILE 392 392 392 ILE ILE A . n A 1 393 LEU 393 393 393 LEU LEU A . n A 1 394 ALA 394 394 394 ALA ALA A . n A 1 395 LYS 395 395 395 LYS LYS A . n A 1 396 GLU 396 396 396 GLU GLU A . n A 1 397 GLY 397 397 397 GLY GLY A . n A 1 398 PRO 398 398 398 PRO PRO A . n A 1 399 PHE 399 399 399 PHE PHE A . n A 1 400 LEU 400 400 400 LEU LEU A . n A 1 401 ALA 401 401 401 ALA ALA A . n A 1 402 ASP 402 402 402 ASP ASP A . n A 1 403 GLY 403 403 403 GLY GLY A . n A 1 404 GLY 404 404 404 GLY GLY A . n A 1 405 ARG 405 405 405 ARG ARG A . n A 1 406 PHE 406 406 406 PHE PHE A . n A 1 407 ILE 407 407 407 ILE ILE A . n A 1 408 LEU 408 408 408 LEU LEU A . n A 1 409 PRO 409 409 409 PRO PRO A . n A 1 410 ASN 410 410 410 ASN ASN A . n A 1 411 PRO 411 411 411 PRO PRO A . n A 1 412 ARG 412 412 412 ARG ARG A . n A 1 413 PRO 413 413 413 PRO PRO A . n A 1 414 SER 414 414 414 SER SER A . n A 1 415 ILE 415 415 415 ILE ILE A . n A 1 416 VAL 416 416 416 VAL VAL A . n A 1 417 PRO 417 417 417 PRO PRO A . n A 1 418 PRO 418 418 418 PRO PRO A . n A 1 419 GLY 419 419 419 GLY GLY A . n A 1 420 GLU 420 420 420 GLU GLU A . n A 1 421 HIS 421 421 421 HIS HIS A . n A 1 422 HIS 422 422 422 HIS HIS A . n A 1 423 HIS 423 423 423 HIS HIS A . n A 1 424 HIS 424 424 ? ? ? A . n A 1 425 HIS 425 425 ? ? ? A . n A 1 426 HIS 426 426 ? ? ? A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSO _pdbx_struct_mod_residue.label_seq_id 349 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSO _pdbx_struct_mod_residue.auth_seq_id 349 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details S-HYDROXYCYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 59 ? A CYS 59 ? 1_555 117.2 ? 2 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 56 ? A CYS 56 ? 1_555 108.8 ? 3 SG ? A CYS 59 ? A CYS 59 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 56 ? A CYS 56 ? 1_555 105.0 ? 4 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 16 ? A CYS 16 ? 1_555 118.3 ? 5 SG ? A CYS 59 ? A CYS 59 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 16 ? A CYS 16 ? 1_555 103.7 ? 6 SG ? A CYS 56 ? A CYS 56 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 16 ? A CYS 16 ? 1_555 102.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-28 2 'Structure model' 1 1 2015-05-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0073 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 11 ? ? -106.20 -81.33 2 1 SER A 82 ? ? 80.24 178.83 3 1 SER A 84 ? ? -42.78 155.41 4 1 ASN A 116 ? ? 65.22 -136.01 5 1 HIS A 178 ? ? 69.36 -55.50 6 1 VAL A 179 ? ? -33.77 -32.88 7 1 GLU A 396 ? ? -98.86 33.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A ILE 3 ? A ILE 3 4 1 Y 1 A TYR 4 ? A TYR 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A HIS 424 ? A HIS 424 7 1 Y 1 A HIS 425 ? A HIS 425 8 1 Y 1 A HIS 426 ? A HIS 426 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 "THYMIDINE-5'-DIPHOSPHATE" TYD 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 501 500 ZN ZN A . C 3 TYD 1 502 507 TYD TYD A . D 4 HOH 1 601 1 HOH HOH A . D 4 HOH 2 602 2 HOH HOH A . D 4 HOH 3 603 4 HOH HOH A . D 4 HOH 4 604 5 HOH HOH A . D 4 HOH 5 605 8 HOH HOH A . D 4 HOH 6 606 10 HOH HOH A . D 4 HOH 7 607 12 HOH HOH A . D 4 HOH 8 608 16 HOH HOH A . #