data_4S3G # _entry.id 4S3G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB088131 PDB 4S3G WWPDB D_1000088131 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4RV3 _pdbx_database_related.details 'H258X mutant' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4S3G _pdbx_database_status.recvd_initial_deposition_date 2015-01-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'He, T.' 1 'Gershenson, A.' 2 'Eyles, S.J.' 3 'Gao, J.' 4 'Roberts, M.F.' 5 # _citation.id primary _citation.title 'Fluorinated Aromatic Amino Acids Distinguish Cation-pi Interactions from Membrane Insertion.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 290 _citation.page_first 19334 _citation.page_last 19342 _citation.year 2015 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26092728 _citation.pdbx_database_id_DOI 10.1074/jbc.M115.668343 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'He, T.' 1 primary 'Gershenson, A.' 2 primary 'Eyles, S.J.' 3 primary 'Lee, Y.J.' 4 primary 'Liu, W.R.' 5 primary 'Wang, J.' 6 primary 'Gao, J.' 7 primary 'Roberts, M.F.' 8 # _cell.entry_id 4S3G _cell.length_a 60.050 _cell.length_b 60.050 _cell.length_c 191.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4S3G _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '1-phosphatidylinositol phosphodiesterase' 34260.949 1 4.6.1.13 'F249X (X=PF5)' 'UNP residues 11-312' ? 2 non-polymer syn 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE 180.156 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phosphatidylinositol diacylglycerol-lyase, Phosphatidylinositol-specific phospholipase C, PI-PLC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHH GMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGK IVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFL SVASGGSA(PF5)NSTYNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNK ; _entity_poly.pdbx_seq_one_letter_code_can ;SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHH GMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGK IVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFL SVASGGSAFNSTYNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 SER n 1 4 LEU n 1 5 SER n 1 6 LYS n 1 7 SER n 1 8 PRO n 1 9 GLU n 1 10 ASN n 1 11 TRP n 1 12 MET n 1 13 SER n 1 14 LYS n 1 15 LEU n 1 16 ASP n 1 17 ASP n 1 18 GLY n 1 19 LYS n 1 20 HIS n 1 21 LEU n 1 22 THR n 1 23 GLU n 1 24 ILE n 1 25 ASN n 1 26 ILE n 1 27 PRO n 1 28 GLY n 1 29 SER n 1 30 HIS n 1 31 ASP n 1 32 SER n 1 33 GLY n 1 34 SER n 1 35 PHE n 1 36 THR n 1 37 LEU n 1 38 LYS n 1 39 ASP n 1 40 PRO n 1 41 VAL n 1 42 LYS n 1 43 SER n 1 44 VAL n 1 45 TRP n 1 46 ALA n 1 47 LYS n 1 48 THR n 1 49 GLN n 1 50 ASP n 1 51 LYS n 1 52 ASP n 1 53 TYR n 1 54 LEU n 1 55 THR n 1 56 GLN n 1 57 MET n 1 58 LYS n 1 59 SER n 1 60 GLY n 1 61 VAL n 1 62 ARG n 1 63 PHE n 1 64 PHE n 1 65 ASP n 1 66 ILE n 1 67 ARG n 1 68 GLY n 1 69 ARG n 1 70 ALA n 1 71 SER n 1 72 ALA n 1 73 ASP n 1 74 ASN n 1 75 MET n 1 76 ILE n 1 77 SER n 1 78 VAL n 1 79 HIS n 1 80 HIS n 1 81 GLY n 1 82 MET n 1 83 VAL n 1 84 TYR n 1 85 LEU n 1 86 HIS n 1 87 HIS n 1 88 GLU n 1 89 LEU n 1 90 GLY n 1 91 LYS n 1 92 PHE n 1 93 LEU n 1 94 ASP n 1 95 ASP n 1 96 ALA n 1 97 LYS n 1 98 TYR n 1 99 TYR n 1 100 LEU n 1 101 SER n 1 102 ALA n 1 103 TYR n 1 104 PRO n 1 105 ASN n 1 106 GLU n 1 107 THR n 1 108 ILE n 1 109 VAL n 1 110 MET n 1 111 SER n 1 112 MET n 1 113 LYS n 1 114 LYS n 1 115 ASP n 1 116 TYR n 1 117 ASP n 1 118 SER n 1 119 ASP n 1 120 SER n 1 121 LYS n 1 122 VAL n 1 123 THR n 1 124 LYS n 1 125 THR n 1 126 PHE n 1 127 GLU n 1 128 GLU n 1 129 ILE n 1 130 PHE n 1 131 ARG n 1 132 GLU n 1 133 TYR n 1 134 TYR n 1 135 TYR n 1 136 ASN n 1 137 ASN n 1 138 PRO n 1 139 GLN n 1 140 TYR n 1 141 GLN n 1 142 ASN n 1 143 LEU n 1 144 PHE n 1 145 TYR n 1 146 THR n 1 147 GLY n 1 148 SER n 1 149 ASN n 1 150 ALA n 1 151 ASN n 1 152 PRO n 1 153 THR n 1 154 LEU n 1 155 LYS n 1 156 GLU n 1 157 THR n 1 158 LYS n 1 159 GLY n 1 160 LYS n 1 161 ILE n 1 162 VAL n 1 163 LEU n 1 164 PHE n 1 165 ASN n 1 166 ARG n 1 167 MET n 1 168 GLY n 1 169 GLY n 1 170 THR n 1 171 TYR n 1 172 ILE n 1 173 LYS n 1 174 SER n 1 175 GLY n 1 176 TYR n 1 177 GLY n 1 178 ALA n 1 179 ASP n 1 180 THR n 1 181 SER n 1 182 GLY n 1 183 ILE n 1 184 GLN n 1 185 TRP n 1 186 ALA n 1 187 ASP n 1 188 ASN n 1 189 ALA n 1 190 THR n 1 191 PHE n 1 192 GLU n 1 193 THR n 1 194 LYS n 1 195 ILE n 1 196 ASN n 1 197 ASN n 1 198 GLY n 1 199 SER n 1 200 LEU n 1 201 ASN n 1 202 LEU n 1 203 LYS n 1 204 VAL n 1 205 GLN n 1 206 ASP n 1 207 GLU n 1 208 TYR n 1 209 LYS n 1 210 ASP n 1 211 TYR n 1 212 TYR n 1 213 ASP n 1 214 LYS n 1 215 LYS n 1 216 VAL n 1 217 GLU n 1 218 ALA n 1 219 VAL n 1 220 LYS n 1 221 ASN n 1 222 LEU n 1 223 LEU n 1 224 ALA n 1 225 LYS n 1 226 ALA n 1 227 LYS n 1 228 THR n 1 229 ASP n 1 230 SER n 1 231 ASN n 1 232 LYS n 1 233 ASP n 1 234 ASN n 1 235 VAL n 1 236 TYR n 1 237 VAL n 1 238 ASN n 1 239 PHE n 1 240 LEU n 1 241 SER n 1 242 VAL n 1 243 ALA n 1 244 SER n 1 245 GLY n 1 246 GLY n 1 247 SER n 1 248 ALA n 1 249 PF5 n 1 250 ASN n 1 251 SER n 1 252 THR n 1 253 TYR n 1 254 ASN n 1 255 TYR n 1 256 ALA n 1 257 SER n 1 258 HIS n 1 259 ILE n 1 260 ASN n 1 261 PRO n 1 262 GLU n 1 263 ILE n 1 264 ALA n 1 265 LYS n 1 266 THR n 1 267 ILE n 1 268 LYS n 1 269 ALA n 1 270 ASN n 1 271 GLY n 1 272 LYS n 1 273 ALA n 1 274 ARG n 1 275 THR n 1 276 GLY n 1 277 TRP n 1 278 LEU n 1 279 ILE n 1 280 VAL n 1 281 ASP n 1 282 TYR n 1 283 ALA n 1 284 GLY n 1 285 TYR n 1 286 THR n 1 287 TRP n 1 288 PRO n 1 289 GLY n 1 290 TYR n 1 291 ASP n 1 292 ASP n 1 293 ILE n 1 294 VAL n 1 295 SER n 1 296 GLU n 1 297 ILE n 1 298 ILE n 1 299 ASP n 1 300 SER n 1 301 ASN n 1 302 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene plc _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Newman _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus str. Newman' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 426430 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLC_STAAE _struct_ref.pdbx_db_accession P45723 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHH GMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGK IVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFL SVASGGSAFNSTYNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNK ; _struct_ref.pdbx_align_begin 11 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4S3G _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 302 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P45723 _struct_ref_seq.db_align_beg 11 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 312 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 302 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 INS non-polymer . 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE MYO-INOSITOL 'C6 H12 O6' 180.156 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PF5 'L-peptide linking' n 2,3,4,5,6-PENTAFLUORO-L-PHENYLALANINE 'FLUORINATED PHENYLALANINE' 'C9 H6 F5 N O2' 255.141 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4S3G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;22% PEG 4000, 0.15 M ammonium acetate, 0.1 M sodium acetate, 0.01M magnesium nitrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K, temperature 277.0K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2014-09-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rigaku Micromax-07 HF microfocus' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4S3G _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.26 _reflns.d_resolution_high 2.5 _reflns.number_obs 12823 _reflns.number_all 12856 _reflns.percent_possible_obs 99.7 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.73 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4S3G _refine.ls_number_reflns_obs 12821 _refine.ls_number_reflns_all 12862 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.26 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 99.68 _refine.ls_R_factor_obs 0.2155 _refine.ls_R_factor_R_work 0.2118 _refine.ls_R_factor_R_free 0.2906 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.86 _refine.ls_number_reflns_R_free 623 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.45 _refine.pdbx_overall_phase_error 33.55 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2408 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 2478 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 42.26 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.010 ? ? 2480 ? 'X-RAY DIFFRACTION' f_angle_d 1.337 ? ? 3356 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.063 ? ? 895 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.060 ? ? 356 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 427 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.50 2.7516 2978 0.3178 100.00 0.4411 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.7516 3.1497 2962 0.2917 100.00 0.4297 . . 167 . . . . 'X-RAY DIFFRACTION' . 3.1497 3.9678 3047 0.2163 100.00 0.2747 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.9678 42.26 3211 0.1694 99.00 0.2291 . . 159 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4S3G _struct.title 'Structure of the F249X mutant of Phosphatidylinositol-specific phospholipase C from Staphylococcus aureus' _struct.pdbx_descriptor '1-phosphatidylinositol phosphodiesterase (E.C.4.6.1.13)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4S3G _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'TIM barrel, cation-pi, phospholipase, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? SER A 7 ? SER A 3 SER A 7 5 ? 5 HELX_P HELX_P2 2 TRP A 11 ? LEU A 15 ? TRP A 11 LEU A 15 5 ? 5 HELX_P HELX_P3 3 GLY A 33 ? LEU A 37 ? GLY A 33 LEU A 37 5 ? 5 HELX_P HELX_P4 4 ASP A 39 ? LYS A 47 ? ASP A 39 LYS A 47 1 ? 9 HELX_P HELX_P5 5 ASP A 52 ? SER A 59 ? ASP A 52 SER A 59 1 ? 8 HELX_P HELX_P6 6 LEU A 89 ? TYR A 103 ? LEU A 89 TYR A 103 1 ? 15 HELX_P HELX_P7 7 THR A 125 ? TYR A 134 ? THR A 125 TYR A 134 1 ? 10 HELX_P HELX_P8 8 ASN A 137 ? GLN A 141 ? ASN A 137 GLN A 141 5 ? 5 HELX_P HELX_P9 9 THR A 153 ? LYS A 158 ? THR A 153 LYS A 158 1 ? 6 HELX_P HELX_P10 10 TYR A 211 ? ASP A 229 ? TYR A 211 ASP A 229 1 ? 19 HELX_P HELX_P11 11 SER A 251 ? ASN A 270 ? SER A 251 ASN A 270 1 ? 20 HELX_P HELX_P12 12 ASP A 292 ? ASN A 301 ? ASP A 292 ASN A 301 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 248 C ? ? ? 1_555 A PF5 249 N ? ? A ALA 248 A PF5 249 1_555 ? ? ? ? ? ? ? 1.315 ? covale2 covale ? ? A PF5 249 C ? ? ? 1_555 A ASN 250 N ? ? A PF5 249 A ASN 250 1_555 ? ? ? ? ? ? ? 1.351 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PF5 _struct_mon_prot_cis.label_seq_id 249 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PF5 _struct_mon_prot_cis.auth_seq_id 249 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 250 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 250 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 17.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 83 ? GLU A 88 ? VAL A 83 GLU A 88 A 2 MET A 75 ? HIS A 80 ? MET A 75 HIS A 80 A 3 PHE A 63 ? ALA A 72 ? PHE A 63 ALA A 72 A 4 ILE A 108 ? LYS A 114 ? ILE A 108 LYS A 114 A 5 ILE A 161 ? ARG A 166 ? ILE A 161 ARG A 166 B 1 VAL A 83 ? GLU A 88 ? VAL A 83 GLU A 88 B 2 MET A 75 ? HIS A 80 ? MET A 75 HIS A 80 B 3 PHE A 63 ? ALA A 72 ? PHE A 63 ALA A 72 B 4 ILE A 26 ? SER A 29 ? ILE A 26 SER A 29 B 5 TRP A 277 ? VAL A 280 ? TRP A 277 VAL A 280 B 6 ASN A 234 ? PHE A 239 ? ASN A 234 PHE A 239 B 7 LEU A 200 ? ASP A 206 ? LEU A 200 ASP A 206 B 8 ALA A 189 ? ILE A 195 ? ALA A 189 ILE A 195 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 87 ? O HIS A 87 N VAL A 78 ? N VAL A 78 A 2 3 O SER A 77 ? O SER A 77 N ARG A 69 ? N ARG A 69 A 3 4 N GLY A 68 ? N GLY A 68 O LYS A 113 ? O LYS A 113 A 4 5 N ILE A 108 ? N ILE A 108 O VAL A 162 ? O VAL A 162 B 1 2 O HIS A 87 ? O HIS A 87 N VAL A 78 ? N VAL A 78 B 2 3 O SER A 77 ? O SER A 77 N ARG A 69 ? N ARG A 69 B 3 4 O PHE A 63 ? O PHE A 63 N SER A 29 ? N SER A 29 B 4 5 N GLY A 28 ? N GLY A 28 O VAL A 280 ? O VAL A 280 B 5 6 O TRP A 277 ? O TRP A 277 N TYR A 236 ? N TYR A 236 B 6 7 O VAL A 235 ? O VAL A 235 N LYS A 203 ? N LYS A 203 B 7 8 O LEU A 200 ? O LEU A 200 N ILE A 195 ? N ILE A 195 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE INS A 401' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 30 ? HIS A 30 . ? 1_555 ? 2 AC1 6 ARG A 67 ? ARG A 67 . ? 1_555 ? 3 AC1 6 ARG A 166 ? ARG A 166 . ? 1_555 ? 4 AC1 6 TRP A 185 ? TRP A 185 . ? 1_555 ? 5 AC1 6 ASP A 206 ? ASP A 206 . ? 1_555 ? 6 AC1 6 TYR A 208 ? TYR A 208 . ? 1_555 ? 7 AC2 3 LYS A 113 ? LYS A 113 . ? 1_555 ? 8 AC2 3 ARG A 166 ? ARG A 166 . ? 1_555 ? 9 AC2 3 TRP A 185 ? TRP A 185 . ? 1_555 ? # _database_PDB_matrix.entry_id 4S3G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4S3G _atom_sites.fract_transf_matrix[1][1] 0.016653 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016653 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005227 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 MET 57 57 57 MET MET A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 HIS 87 87 87 HIS HIS A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 TYR 145 145 145 TYR TYR A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 ASN 165 165 165 ASN ASN A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 MET 167 167 167 MET MET A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 THR 180 180 180 THR THR A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 TRP 185 185 185 TRP TRP A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 PHE 191 191 191 PHE PHE A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 ASN 201 201 201 ASN ASN A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 ASP 206 206 206 ASP ASP A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 TYR 212 212 212 TYR TYR A . n A 1 213 ASP 213 213 213 ASP ASP A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 SER 230 230 230 SER SER A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 PHE 239 239 239 PHE PHE A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 SER 241 241 241 SER SER A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 ALA 243 243 243 ALA ALA A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 SER 247 247 247 SER SER A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 PF5 249 249 249 PF5 PF5 A . n A 1 250 ASN 250 250 250 ASN ASN A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 THR 252 252 252 THR THR A . n A 1 253 TYR 253 253 253 TYR TYR A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 TYR 255 255 255 TYR TYR A . n A 1 256 ALA 256 256 256 ALA ALA A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ASN 260 260 260 ASN ASN A . n A 1 261 PRO 261 261 261 PRO PRO A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 ILE 263 263 263 ILE ILE A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 THR 266 266 266 THR THR A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 LYS 268 268 268 LYS LYS A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 ASN 270 270 270 ASN ASN A . n A 1 271 GLY 271 271 271 GLY GLY A . n A 1 272 LYS 272 272 272 LYS LYS A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 ARG 274 274 274 ARG ARG A . n A 1 275 THR 275 275 275 THR THR A . n A 1 276 GLY 276 276 276 GLY GLY A . n A 1 277 TRP 277 277 277 TRP TRP A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 ILE 279 279 279 ILE ILE A . n A 1 280 VAL 280 280 280 VAL VAL A . n A 1 281 ASP 281 281 281 ASP ASP A . n A 1 282 TYR 282 282 282 TYR TYR A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 GLY 284 284 284 GLY GLY A . n A 1 285 TYR 285 285 285 TYR TYR A . n A 1 286 THR 286 286 286 THR THR A . n A 1 287 TRP 287 287 287 TRP TRP A . n A 1 288 PRO 288 288 288 PRO PRO A . n A 1 289 GLY 289 289 289 GLY GLY A . n A 1 290 TYR 290 290 290 TYR TYR A . n A 1 291 ASP 291 291 291 ASP ASP A . n A 1 292 ASP 292 292 292 ASP ASP A . n A 1 293 ILE 293 293 293 ILE ILE A . n A 1 294 VAL 294 294 294 VAL VAL A . n A 1 295 SER 295 295 295 SER SER A . n A 1 296 GLU 296 296 296 GLU GLU A . n A 1 297 ILE 297 297 297 ILE ILE A . n A 1 298 ILE 298 298 298 ILE ILE A . n A 1 299 ASP 299 299 299 ASP ASP A . n A 1 300 SER 300 300 300 SER SER A . n A 1 301 ASN 301 301 301 ASN ASN A . n A 1 302 LYS 302 302 302 LYS LYS A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PF5 _pdbx_struct_mod_residue.label_seq_id 249 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PF5 _pdbx_struct_mod_residue.auth_seq_id 249 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id PHE _pdbx_struct_mod_residue.details 2,3,4,5,6-PENTAFLUORO-L-PHENYLALANINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2015-07-15 3 'Structure model' 1 2 2015-08-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASES phasing . ? 2 PHENIX refinement '(phenix.refine: 1.9_1692)' ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 10 ? ? -167.41 53.21 2 1 ASP A 73 ? ? -55.99 0.97 3 1 ASN A 74 ? ? -141.93 10.43 4 1 TYR A 134 ? ? -135.40 -52.01 5 1 ASN A 142 ? ? 75.77 -12.31 6 1 ASN A 151 ? ? -117.59 71.52 7 1 LYS A 158 ? ? -32.64 119.36 8 1 SER A 244 ? ? -64.61 -173.34 9 1 SER A 247 ? ? 68.30 -51.01 10 1 ALA A 248 ? ? 68.86 104.93 11 1 PF5 A 249 ? ? -176.24 -55.18 12 1 ASN A 250 ? ? 87.98 -34.74 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE INS 3 'ACETATE ION' ACT 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 INS 1 401 401 INS INS A . C 3 ACT 1 402 402 ACT ACT A . D 4 HOH 1 501 501 HOH HOH A . D 4 HOH 2 502 502 HOH HOH A . D 4 HOH 3 503 503 HOH HOH A . D 4 HOH 4 504 504 HOH HOH A . D 4 HOH 5 505 505 HOH HOH A . D 4 HOH 6 506 506 HOH HOH A . D 4 HOH 7 507 507 HOH HOH A . D 4 HOH 8 508 508 HOH HOH A . D 4 HOH 9 509 509 HOH HOH A . D 4 HOH 10 510 510 HOH HOH A . D 4 HOH 11 511 511 HOH HOH A . D 4 HOH 12 512 512 HOH HOH A . D 4 HOH 13 513 513 HOH HOH A . D 4 HOH 14 514 514 HOH HOH A . D 4 HOH 15 515 515 HOH HOH A . D 4 HOH 16 516 516 HOH HOH A . D 4 HOH 17 517 517 HOH HOH A . D 4 HOH 18 518 518 HOH HOH A . D 4 HOH 19 519 519 HOH HOH A . D 4 HOH 20 520 520 HOH HOH A . D 4 HOH 21 521 521 HOH HOH A . D 4 HOH 22 522 522 HOH HOH A . D 4 HOH 23 523 523 HOH HOH A . D 4 HOH 24 524 524 HOH HOH A . D 4 HOH 25 525 525 HOH HOH A . D 4 HOH 26 526 526 HOH HOH A . D 4 HOH 27 527 527 HOH HOH A . D 4 HOH 28 528 528 HOH HOH A . D 4 HOH 29 529 529 HOH HOH A . D 4 HOH 30 530 530 HOH HOH A . D 4 HOH 31 531 531 HOH HOH A . D 4 HOH 32 532 532 HOH HOH A . D 4 HOH 33 533 533 HOH HOH A . D 4 HOH 34 534 534 HOH HOH A . D 4 HOH 35 535 535 HOH HOH A . D 4 HOH 36 536 536 HOH HOH A . D 4 HOH 37 537 537 HOH HOH A . D 4 HOH 38 538 538 HOH HOH A . D 4 HOH 39 539 539 HOH HOH A . D 4 HOH 40 540 540 HOH HOH A . D 4 HOH 41 541 541 HOH HOH A . D 4 HOH 42 542 542 HOH HOH A . D 4 HOH 43 543 543 HOH HOH A . D 4 HOH 44 544 544 HOH HOH A . D 4 HOH 45 545 545 HOH HOH A . D 4 HOH 46 546 546 HOH HOH A . D 4 HOH 47 547 547 HOH HOH A . D 4 HOH 48 548 548 HOH HOH A . D 4 HOH 49 549 549 HOH HOH A . D 4 HOH 50 550 550 HOH HOH A . D 4 HOH 51 551 551 HOH HOH A . D 4 HOH 52 552 552 HOH HOH A . D 4 HOH 53 553 553 HOH HOH A . D 4 HOH 54 554 554 HOH HOH A . #