data_4SKN # _entry.id 4SKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4SKN pdb_00004skn 10.2210/pdb4skn/pdb NDB PD0041 ? ? RCSB RCSB000519 ? ? WWPDB D_1000000519 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4SKN _pdbx_database_status.recvd_initial_deposition_date 1999-02-20 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Slupphaug, G.' 1 'Mol, C.D.' 2 'Kavli, B.' 3 'Arvai, A.S.' 4 'Krokan, H.E.' 5 'Tainer, J.A.' 6 # _citation.id primary _citation.title 'A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA.' _citation.journal_abbrev Nature _citation.journal_volume 384 _citation.page_first 87 _citation.page_last 92 _citation.year 1996 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8900285 _citation.pdbx_database_id_DOI 10.1038/384087a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Slupphaug, G.' 1 ? primary 'Mol, C.D.' 2 ? primary 'Kavli, B.' 3 ? primary 'Arvai, A.S.' 4 ? primary 'Krokan, H.E.' 5 ? primary 'Tainer, J.A.' 6 ? # _cell.entry_id 4SKN _cell.length_a 48.830 _cell.length_b 65.660 _cell.length_c 97.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4SKN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*GP*GP*(D1P)P*GP*GP*CP*TP*T)-3') ; 2998.927 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*AP*GP*CP*CP*GP*CP*CP*C)-3') ; 2998.984 1 ? ? ? ? 3 polymer man 'PROTEIN (URACIL-DNA GLYCOSYLASE)' 25587.188 1 3.2.2.3 'P82M, W83E, G84F, D145N, L272R' ? ? 4 non-polymer syn URACIL 112.087 1 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'UDG, UNG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DG)(DG)(DG)(ORP)(DG)(DG)(DC)(DT)(DT)' TGGGXGGCTT A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DC)(DC)(DG)(DC)(DC)(DC)' AAAGCCGCCC B ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQNPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPRSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQNPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPRSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 ORP n 1 6 DG n 1 7 DG n 1 8 DC n 1 9 DT n 1 10 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DC n 2 10 DC n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASN n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 ARG n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP UNG_HUMAN P13051 3 94 ? ? 2 PDB 4SKN 4SKN 1 ? ? ? 3 PDB 4SKN 4SKN 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4SKN E 4 ? 223 ? P13051 94 ? 313 ? 85 304 2 2 4SKN A 1 ? 10 ? 4SKN 1 ? 10 ? 1 10 3 3 4SKN B 1 ? 10 ? 4SKN 21 ? 30 ? 21 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4SKN MET E 1 ? UNP P13051 ? ? 'cloning artifact' 82 1 1 4SKN GLU E 2 ? UNP P13051 ? ? 'cloning artifact' 83 2 1 4SKN PHE E 3 ? UNP P13051 ? ? 'cloning artifact' 84 3 1 4SKN ASN E 64 ? UNP P13051 ASP 145 'engineered mutation' 145 4 1 4SKN ARG E 191 ? UNP P13051 LEU 272 'engineered mutation' 272 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 URA non-polymer . URACIL ? 'C4 H4 N2 O2' 112.087 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4SKN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.68 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1996-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.08 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4SKN _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 2.9 _reflns.number_obs 7140 _reflns.number_all ? _reflns.percent_possible_obs 97 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.108 _reflns.pdbx_netI_over_sigmaI 7.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 98 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.398 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 4SKN _refine.ls_number_reflns_obs 6861 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.9 _refine.pdbx_data_cutoff_high_absF 100000 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.9 _refine.ls_percent_reflns_obs 93.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1891000 _refine.ls_R_factor_R_free 0.2730000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 711 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 30.49 _refine.aniso_B[2][2] 26.58 _refine.aniso_B[3][3] 3.67 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE ELECTRON DENSITY FOR THE DNA 5' OF THE URACIL-CONTAINING NUCLEOTIDE IS POOR. THE COBALAMIN HAS BEEN MODELLED AS THE 5-COORDINATES REDUCED COB(II)ALAMIN (B12R), SINCE THERE IS NO ELECTRON DENSITY FOR AN ADENOSYL GROUP LINKED TO THE COBALT ATOM. HOWEVER, A HALF-OCCUPIED 5'-DEOXYADENOSINE HAS BEEN BUILT INTO ELECTRON DENSITY IN THE ACTIVE SITE (RESIDUES A803 AND AND C803). RESIDUES A801 AND A802 (AND C801, C802) REPRESENT AN EQUIMOLAR MIXTURE OF SUBSTRATE AND PRODUCT, SUCCINYL- AND METHYLMALONYL-COENZYME A. ; _refine.pdbx_starting_model 'PDB ENTRY 1AKZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1811 _refine_hist.pdbx_number_atoms_nucleic_acid 397 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 2291 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.392 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 22.66 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.391 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.03 _refine_ls_shell.number_reflns_R_work 6150 _refine_ls_shell.R_factor_R_work 0.3566000 _refine_ls_shell.percent_reflns_obs 92.8 _refine_ls_shell.R_factor_R_free 0.3960000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.6 _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM_NDBX.DNA TOP_NDBX.DNA 'X-RAY DIFFRACTION' 3 PARAM19.SOL TOPH19.SOL 'X-RAY DIFFRACTION' # _struct.entry_id 4SKN _struct.title 'A NUCLEOTIDE-FLIPPING MECHANISM FROM THE STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4SKN _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA GLYCOSYLASE, DNA BASE EXCISION REPAIR, URACIL, DNA, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 6 ? PHE C 16 ? GLU E 87 PHE E 97 1 ? 11 HELX_P HELX_P2 2 PRO C 19 ? HIS C 34 ? PRO E 100 HIS E 115 1 ? 16 HELX_P HELX_P3 3 PRO C 41 ? GLN C 43 ? PRO E 122 GLN E 124 5 ? 3 HELX_P HELX_P4 4 THR C 46 ? GLN C 49 ? THR E 127 GLN E 130 1 ? 4 HELX_P HELX_P5 5 ILE C 53 ? ASP C 55 ? ILE E 134 ASP E 136 5 ? 3 HELX_P HELX_P6 6 PRO C 87 ? ASP C 99 ? PRO E 168 ASP E 180 1 ? 13 HELX_P HELX_P7 7 SER C 112 ? GLN C 117 ? SER E 193 GLN E 198 1 ? 6 HELX_P HELX_P8 8 TRP C 141 ? GLN C 154 ? TRP E 222 GLN E 235 1 ? 14 HELX_P HELX_P9 9 SER C 166 ? ALA C 174 ? SER E 247 ALA E 255 1 ? 9 HELX_P HELX_P10 10 PRO C 190 ? ARG C 195 ? PRO E 271 ARG E 276 1 ? 6 HELX_P HELX_P11 11 HIS C 202 ? LYS C 212 ? HIS E 283 LYS E 293 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A ORP 5 P ? ? A DG 4 A ORP 5 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale one ? A ORP 5 O3 ? ? ? 1_555 A DG 6 P ? ? A ORP 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.615 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 4 B DC 28 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 6 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 6 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 6 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 7 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 7 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 7 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 10 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 10 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 E PRO 39 C ? PRO 120 E 1 -0.53 2 ARG 81 C . ? ARG 162 E PRO 82 C ? PRO 163 E 1 0.18 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 119 ? ASN C 123 ? VAL E 200 ASN E 204 A 2 VAL C 58 ? GLY C 62 ? VAL E 139 GLY E 143 A 3 VAL C 160 ? TRP C 164 ? VAL E 241 TRP E 245 A 4 HIS C 181 ? THR C 185 ? HIS E 262 THR E 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU C 120 ? O LEU E 201 N VAL C 58 ? N VAL E 139 A 2 3 O VAL C 59 ? O VAL E 140 N VAL C 160 ? N VAL E 241 A 3 4 O PHE C 161 ? O PHE E 242 N HIS C 181 ? N HIS E 262 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id E _struct_site.pdbx_auth_comp_id URA _struct_site.pdbx_auth_seq_id 305 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE URA E 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ORP A 5 ? ORP A 5 . ? 1_555 ? 2 AC1 9 GLY C 62 ? GLY E 143 . ? 1_555 ? 3 AC1 9 GLN C 63 ? GLN E 144 . ? 1_555 ? 4 AC1 9 ASN C 64 ? ASN E 145 . ? 1_555 ? 5 AC1 9 TYR C 66 ? TYR E 147 . ? 1_555 ? 6 AC1 9 CYS C 76 ? CYS E 157 . ? 1_555 ? 7 AC1 9 PHE C 77 ? PHE E 158 . ? 1_555 ? 8 AC1 9 ASN C 123 ? ASN E 204 . ? 1_555 ? 9 AC1 9 HIS C 187 ? HIS E 268 . ? 1_555 ? # _database_PDB_matrix.entry_id 4SKN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4SKN _atom_sites.fract_transf_matrix[1][1] 0.020479 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015230 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010293 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 ORP 5 5 5 ORP D1P A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DT 10 10 10 DT T A . n B 2 1 DA 1 21 21 DA A B . n B 2 2 DA 2 22 22 DA A B . n B 2 3 DA 3 23 23 DA A B . n B 2 4 DG 4 24 24 DG G B . n B 2 5 DC 5 25 25 DC C B . n B 2 6 DC 6 26 26 DC C B . n B 2 7 DG 7 27 27 DG G B . n B 2 8 DC 8 28 28 DC C B . n B 2 9 DC 9 29 29 DC C B . n B 2 10 DC 10 30 30 DC C B . n C 3 1 MET 1 82 82 MET MET E . n C 3 2 GLU 2 83 83 GLU GLU E . n C 3 3 PHE 3 84 84 PHE PHE E . n C 3 4 PHE 4 85 85 PHE PHE E . n C 3 5 GLY 5 86 86 GLY GLY E . n C 3 6 GLU 6 87 87 GLU GLU E . n C 3 7 SER 7 88 88 SER SER E . n C 3 8 TRP 8 89 89 TRP TRP E . n C 3 9 LYS 9 90 90 LYS LYS E . n C 3 10 LYS 10 91 91 LYS LYS E . n C 3 11 HIS 11 92 92 HIS HIS E . n C 3 12 LEU 12 93 93 LEU LEU E . n C 3 13 SER 13 94 94 SER SER E . n C 3 14 GLY 14 95 95 GLY GLY E . n C 3 15 GLU 15 96 96 GLU GLU E . n C 3 16 PHE 16 97 97 PHE PHE E . n C 3 17 GLY 17 98 98 GLY GLY E . n C 3 18 LYS 18 99 99 LYS LYS E . n C 3 19 PRO 19 100 100 PRO PRO E . n C 3 20 TYR 20 101 101 TYR TYR E . n C 3 21 PHE 21 102 102 PHE PHE E . n C 3 22 ILE 22 103 103 ILE ILE E . n C 3 23 LYS 23 104 104 LYS LYS E . n C 3 24 LEU 24 105 105 LEU LEU E . n C 3 25 MET 25 106 106 MET MET E . n C 3 26 GLY 26 107 107 GLY GLY E . n C 3 27 PHE 27 108 108 PHE PHE E . n C 3 28 VAL 28 109 109 VAL VAL E . n C 3 29 ALA 29 110 110 ALA ALA E . n C 3 30 GLU 30 111 111 GLU GLU E . n C 3 31 GLU 31 112 112 GLU GLU E . n C 3 32 ARG 32 113 113 ARG ARG E . n C 3 33 LYS 33 114 114 LYS LYS E . n C 3 34 HIS 34 115 115 HIS HIS E . n C 3 35 TYR 35 116 116 TYR TYR E . n C 3 36 THR 36 117 117 THR THR E . n C 3 37 VAL 37 118 118 VAL VAL E . n C 3 38 TYR 38 119 119 TYR TYR E . n C 3 39 PRO 39 120 120 PRO PRO E . n C 3 40 PRO 40 121 121 PRO PRO E . n C 3 41 PRO 41 122 122 PRO PRO E . n C 3 42 HIS 42 123 123 HIS HIS E . n C 3 43 GLN 43 124 124 GLN GLN E . n C 3 44 VAL 44 125 125 VAL VAL E . n C 3 45 PHE 45 126 126 PHE PHE E . n C 3 46 THR 46 127 127 THR THR E . n C 3 47 TRP 47 128 128 TRP TRP E . n C 3 48 THR 48 129 129 THR THR E . n C 3 49 GLN 49 130 130 GLN GLN E . n C 3 50 MET 50 131 131 MET MET E . n C 3 51 CYS 51 132 132 CYS CYS E . n C 3 52 ASP 52 133 133 ASP ASP E . n C 3 53 ILE 53 134 134 ILE ILE E . n C 3 54 LYS 54 135 135 LYS LYS E . n C 3 55 ASP 55 136 136 ASP ASP E . n C 3 56 VAL 56 137 137 VAL VAL E . n C 3 57 LYS 57 138 138 LYS LYS E . n C 3 58 VAL 58 139 139 VAL VAL E . n C 3 59 VAL 59 140 140 VAL VAL E . n C 3 60 ILE 60 141 141 ILE ILE E . n C 3 61 LEU 61 142 142 LEU LEU E . n C 3 62 GLY 62 143 143 GLY GLY E . n C 3 63 GLN 63 144 144 GLN GLN E . n C 3 64 ASN 64 145 145 ASN ASN E . n C 3 65 PRO 65 146 146 PRO PRO E . n C 3 66 TYR 66 147 147 TYR TYR E . n C 3 67 HIS 67 148 148 HIS HIS E . n C 3 68 GLY 68 149 149 GLY GLY E . n C 3 69 PRO 69 150 150 PRO PRO E . n C 3 70 ASN 70 151 151 ASN ASN E . n C 3 71 GLN 71 152 152 GLN GLN E . n C 3 72 ALA 72 153 153 ALA ALA E . n C 3 73 HIS 73 154 154 HIS HIS E . n C 3 74 GLY 74 155 155 GLY GLY E . n C 3 75 LEU 75 156 156 LEU LEU E . n C 3 76 CYS 76 157 157 CYS CYS E . n C 3 77 PHE 77 158 158 PHE PHE E . n C 3 78 SER 78 159 159 SER SER E . n C 3 79 VAL 79 160 160 VAL VAL E . n C 3 80 GLN 80 161 161 GLN GLN E . n C 3 81 ARG 81 162 162 ARG ARG E . n C 3 82 PRO 82 163 163 PRO PRO E . n C 3 83 VAL 83 164 164 VAL VAL E . n C 3 84 PRO 84 165 165 PRO PRO E . n C 3 85 PRO 85 166 166 PRO PRO E . n C 3 86 PRO 86 167 167 PRO PRO E . n C 3 87 PRO 87 168 168 PRO PRO E . n C 3 88 SER 88 169 169 SER SER E . n C 3 89 LEU 89 170 170 LEU LEU E . n C 3 90 GLU 90 171 171 GLU GLU E . n C 3 91 ASN 91 172 172 ASN ASN E . n C 3 92 ILE 92 173 173 ILE ILE E . n C 3 93 TYR 93 174 174 TYR TYR E . n C 3 94 LYS 94 175 175 LYS LYS E . n C 3 95 GLU 95 176 176 GLU GLU E . n C 3 96 LEU 96 177 177 LEU LEU E . n C 3 97 SER 97 178 178 SER SER E . n C 3 98 THR 98 179 179 THR THR E . n C 3 99 ASP 99 180 180 ASP ASP E . n C 3 100 ILE 100 181 181 ILE ILE E . n C 3 101 GLU 101 182 182 GLU GLU E . n C 3 102 ASP 102 183 183 ASP ASP E . n C 3 103 PHE 103 184 184 PHE PHE E . n C 3 104 VAL 104 185 185 VAL VAL E . n C 3 105 HIS 105 186 186 HIS HIS E . n C 3 106 PRO 106 187 187 PRO PRO E . n C 3 107 GLY 107 188 188 GLY GLY E . n C 3 108 HIS 108 189 189 HIS HIS E . n C 3 109 GLY 109 190 190 GLY GLY E . n C 3 110 ASP 110 191 191 ASP ASP E . n C 3 111 LEU 111 192 192 LEU LEU E . n C 3 112 SER 112 193 193 SER SER E . n C 3 113 GLY 113 194 194 GLY GLY E . n C 3 114 TRP 114 195 195 TRP TRP E . n C 3 115 ALA 115 196 196 ALA ALA E . n C 3 116 LYS 116 197 197 LYS LYS E . n C 3 117 GLN 117 198 198 GLN GLN E . n C 3 118 GLY 118 199 199 GLY GLY E . n C 3 119 VAL 119 200 200 VAL VAL E . n C 3 120 LEU 120 201 201 LEU LEU E . n C 3 121 LEU 121 202 202 LEU LEU E . n C 3 122 LEU 122 203 203 LEU LEU E . n C 3 123 ASN 123 204 204 ASN ASN E . n C 3 124 ALA 124 205 205 ALA ALA E . n C 3 125 VAL 125 206 206 VAL VAL E . n C 3 126 LEU 126 207 207 LEU LEU E . n C 3 127 THR 127 208 208 THR THR E . n C 3 128 VAL 128 209 209 VAL VAL E . n C 3 129 ARG 129 210 210 ARG ARG E . n C 3 130 ALA 130 211 211 ALA ALA E . n C 3 131 HIS 131 212 212 HIS HIS E . n C 3 132 GLN 132 213 213 GLN GLN E . n C 3 133 ALA 133 214 214 ALA ALA E . n C 3 134 ASN 134 215 215 ASN ASN E . n C 3 135 SER 135 216 216 SER SER E . n C 3 136 HIS 136 217 217 HIS HIS E . n C 3 137 LYS 137 218 218 LYS LYS E . n C 3 138 GLU 138 219 219 GLU GLU E . n C 3 139 ARG 139 220 220 ARG ARG E . n C 3 140 GLY 140 221 221 GLY GLY E . n C 3 141 TRP 141 222 222 TRP TRP E . n C 3 142 GLU 142 223 223 GLU GLU E . n C 3 143 GLN 143 224 224 GLN GLN E . n C 3 144 PHE 144 225 225 PHE PHE E . n C 3 145 THR 145 226 226 THR THR E . n C 3 146 ASP 146 227 227 ASP ASP E . n C 3 147 ALA 147 228 228 ALA ALA E . n C 3 148 VAL 148 229 229 VAL VAL E . n C 3 149 VAL 149 230 230 VAL VAL E . n C 3 150 SER 150 231 231 SER SER E . n C 3 151 TRP 151 232 232 TRP TRP E . n C 3 152 LEU 152 233 233 LEU LEU E . n C 3 153 ASN 153 234 234 ASN ASN E . n C 3 154 GLN 154 235 235 GLN GLN E . n C 3 155 ASN 155 236 236 ASN ASN E . n C 3 156 SER 156 237 237 SER SER E . n C 3 157 ASN 157 238 238 ASN ASN E . n C 3 158 GLY 158 239 239 GLY GLY E . n C 3 159 LEU 159 240 240 LEU LEU E . n C 3 160 VAL 160 241 241 VAL VAL E . n C 3 161 PHE 161 242 242 PHE PHE E . n C 3 162 LEU 162 243 243 LEU LEU E . n C 3 163 LEU 163 244 244 LEU LEU E . n C 3 164 TRP 164 245 245 TRP TRP E . n C 3 165 GLY 165 246 246 GLY GLY E . n C 3 166 SER 166 247 247 SER SER E . n C 3 167 TYR 167 248 248 TYR TYR E . n C 3 168 ALA 168 249 249 ALA ALA E . n C 3 169 GLN 169 250 250 GLN GLN E . n C 3 170 LYS 170 251 251 LYS LYS E . n C 3 171 LYS 171 252 252 LYS LYS E . n C 3 172 GLY 172 253 253 GLY GLY E . n C 3 173 SER 173 254 254 SER SER E . n C 3 174 ALA 174 255 255 ALA ALA E . n C 3 175 ILE 175 256 256 ILE ILE E . n C 3 176 ASP 176 257 257 ASP ASP E . n C 3 177 ARG 177 258 258 ARG ARG E . n C 3 178 LYS 178 259 259 LYS LYS E . n C 3 179 ARG 179 260 260 ARG ARG E . n C 3 180 HIS 180 261 261 HIS HIS E . n C 3 181 HIS 181 262 262 HIS HIS E . n C 3 182 VAL 182 263 263 VAL VAL E . n C 3 183 LEU 183 264 264 LEU LEU E . n C 3 184 GLN 184 265 265 GLN GLN E . n C 3 185 THR 185 266 266 THR THR E . n C 3 186 ALA 186 267 267 ALA ALA E . n C 3 187 HIS 187 268 268 HIS HIS E . n C 3 188 PRO 188 269 269 PRO PRO E . n C 3 189 SER 189 270 270 SER SER E . n C 3 190 PRO 190 271 271 PRO PRO E . n C 3 191 ARG 191 272 272 ARG ARG E . n C 3 192 SER 192 273 273 SER SER E . n C 3 193 VAL 193 274 274 VAL VAL E . n C 3 194 TYR 194 275 275 TYR TYR E . n C 3 195 ARG 195 276 276 ARG ARG E . n C 3 196 GLY 196 277 277 GLY GLY E . n C 3 197 PHE 197 278 278 PHE PHE E . n C 3 198 PHE 198 279 279 PHE PHE E . n C 3 199 GLY 199 280 280 GLY GLY E . n C 3 200 CYS 200 281 281 CYS CYS E . n C 3 201 ARG 201 282 282 ARG ARG E . n C 3 202 HIS 202 283 283 HIS HIS E . n C 3 203 PHE 203 284 284 PHE PHE E . n C 3 204 SER 204 285 285 SER SER E . n C 3 205 LYS 205 286 286 LYS LYS E . n C 3 206 THR 206 287 287 THR THR E . n C 3 207 ASN 207 288 288 ASN ASN E . n C 3 208 GLU 208 289 289 GLU GLU E . n C 3 209 LEU 209 290 290 LEU LEU E . n C 3 210 LEU 210 291 291 LEU LEU E . n C 3 211 GLN 211 292 292 GLN GLN E . n C 3 212 LYS 212 293 293 LYS LYS E . n C 3 213 SER 213 294 294 SER SER E . n C 3 214 GLY 214 295 295 GLY GLY E . n C 3 215 LYS 215 296 296 LYS LYS E . n C 3 216 LYS 216 297 297 LYS LYS E . n C 3 217 PRO 217 298 298 PRO PRO E . n C 3 218 ILE 218 299 299 ILE ILE E . n C 3 219 ASP 219 300 300 ASP ASP E . n C 3 220 TRP 220 301 301 TRP TRP E . n C 3 221 LYS 221 302 302 LYS LYS E . n C 3 222 GLU 222 303 303 GLU GLU E . n C 3 223 LEU 223 304 304 LEU LEU E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 URA 1 305 55 URA URA E . E 5 HOH 1 11 9 HOH HOH A . E 5 HOH 2 12 44 HOH HOH A . E 5 HOH 3 13 45 HOH HOH A . E 5 HOH 4 14 46 HOH HOH A . E 5 HOH 5 15 48 HOH HOH A . F 5 HOH 1 31 26 HOH HOH B . F 5 HOH 2 32 35 HOH HOH B . F 5 HOH 3 33 41 HOH HOH B . G 5 HOH 1 1 1 HOH HOH E . G 5 HOH 2 2 2 HOH HOH E . G 5 HOH 3 3 3 HOH HOH E . G 5 HOH 4 4 4 HOH HOH E . G 5 HOH 5 5 5 HOH HOH E . G 5 HOH 6 6 6 HOH HOH E . G 5 HOH 7 7 7 HOH HOH E . G 5 HOH 8 8 8 HOH HOH E . G 5 HOH 9 10 10 HOH HOH E . G 5 HOH 10 11 11 HOH HOH E . G 5 HOH 11 12 12 HOH HOH E . G 5 HOH 12 13 13 HOH HOH E . G 5 HOH 13 14 14 HOH HOH E . G 5 HOH 14 15 15 HOH HOH E . G 5 HOH 15 16 16 HOH HOH E . G 5 HOH 16 17 17 HOH HOH E . G 5 HOH 17 18 18 HOH HOH E . G 5 HOH 18 19 19 HOH HOH E . G 5 HOH 19 20 20 HOH HOH E . G 5 HOH 20 21 21 HOH HOH E . G 5 HOH 21 22 22 HOH HOH E . G 5 HOH 22 23 23 HOH HOH E . G 5 HOH 23 24 24 HOH HOH E . G 5 HOH 24 25 25 HOH HOH E . G 5 HOH 25 27 27 HOH HOH E . G 5 HOH 26 28 28 HOH HOH E . G 5 HOH 27 29 29 HOH HOH E . G 5 HOH 28 30 30 HOH HOH E . G 5 HOH 29 31 31 HOH HOH E . G 5 HOH 30 32 32 HOH HOH E . G 5 HOH 31 33 33 HOH HOH E . G 5 HOH 32 34 34 HOH HOH E . G 5 HOH 33 36 36 HOH HOH E . G 5 HOH 34 37 37 HOH HOH E . G 5 HOH 35 38 38 HOH HOH E . G 5 HOH 36 39 39 HOH HOH E . G 5 HOH 37 40 40 HOH HOH E . G 5 HOH 38 42 42 HOH HOH E . G 5 HOH 39 43 43 HOH HOH E . G 5 HOH 40 47 47 HOH HOH E . G 5 HOH 41 49 49 HOH HOH E . G 5 HOH 42 50 50 HOH HOH E . G 5 HOH 43 51 51 HOH HOH E . G 5 HOH 44 52 52 HOH HOH E . G 5 HOH 45 53 53 HOH HOH E . G 5 HOH 46 54 54 HOH HOH E . G 5 HOH 47 55 55 HOH HOH E . G 5 HOH 48 56 56 HOH HOH E . G 5 HOH 49 57 57 HOH HOH E . G 5 HOH 50 58 58 HOH HOH E . G 5 HOH 51 59 59 HOH HOH E . G 5 HOH 52 60 60 HOH HOH E . G 5 HOH 53 61 61 HOH HOH E . G 5 HOH 54 62 62 HOH HOH E . G 5 HOH 55 63 63 HOH HOH E . G 5 HOH 56 64 64 HOH HOH E . G 5 HOH 57 65 65 HOH HOH E . G 5 HOH 58 66 66 HOH HOH E . G 5 HOH 59 67 67 HOH HOH E . G 5 HOH 60 68 68 HOH HOH E . G 5 HOH 61 69 69 HOH HOH E . G 5 HOH 62 70 70 HOH HOH E . G 5 HOH 63 71 71 HOH HOH E . G 5 HOH 64 72 72 HOH HOH E . G 5 HOH 65 73 73 HOH HOH E . G 5 HOH 66 74 74 HOH HOH E . G 5 HOH 67 75 75 HOH HOH E . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-02-26 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU E 87 ? ? -40.27 -70.74 2 1 PRO E 121 ? ? -48.43 159.51 3 1 GLN E 144 ? ? -91.00 -81.99 4 1 HIS E 148 ? ? -79.22 24.08 5 1 GLN E 152 ? ? -96.21 -64.09 6 1 ARG E 162 ? ? -49.00 153.11 7 1 PRO E 163 ? ? -90.64 31.26 8 1 PRO E 168 ? ? -26.10 -57.51 9 1 HIS E 186 ? ? -50.96 107.77 10 1 HIS E 212 ? ? 52.52 17.87 11 1 THR E 266 ? ? 176.52 169.81 12 1 PRO E 269 ? ? -56.36 -0.14 13 1 ARG E 276 ? ? -83.48 34.41 14 1 ASP E 300 ? ? -104.28 75.62 15 1 TRP E 301 ? ? -49.74 -14.47 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 ORP C1 C N S 393 ORP O1 O N N 394 ORP C2 C N N 395 ORP C3 C N S 396 ORP O3 O N N 397 ORP C4 C N R 398 ORP O4 O N N 399 ORP C5 C N N 400 ORP O5 O N N 401 ORP P P N N 402 ORP O1P O N N 403 ORP O2P O N N 404 ORP O3P O N N 405 ORP H1 H N N 406 ORP HO1 H N N 407 ORP H21 H N N 408 ORP H22 H N N 409 ORP H3 H N N 410 ORP HO3 H N N 411 ORP H4 H N N 412 ORP H51 H N N 413 ORP H52 H N N 414 ORP HOP2 H N N 415 ORP HOP3 H N N 416 PHE N N N N 417 PHE CA C N S 418 PHE C C N N 419 PHE O O N N 420 PHE CB C N N 421 PHE CG C Y N 422 PHE CD1 C Y N 423 PHE CD2 C Y N 424 PHE CE1 C Y N 425 PHE CE2 C Y N 426 PHE CZ C Y N 427 PHE OXT O N N 428 PHE H H N N 429 PHE H2 H N N 430 PHE HA H N N 431 PHE HB2 H N N 432 PHE HB3 H N N 433 PHE HD1 H N N 434 PHE HD2 H N N 435 PHE HE1 H N N 436 PHE HE2 H N N 437 PHE HZ H N N 438 PHE HXT H N N 439 PRO N N N N 440 PRO CA C N S 441 PRO C C N N 442 PRO O O N N 443 PRO CB C N N 444 PRO CG C N N 445 PRO CD C N N 446 PRO OXT O N N 447 PRO H H N N 448 PRO HA H N N 449 PRO HB2 H N N 450 PRO HB3 H N N 451 PRO HG2 H N N 452 PRO HG3 H N N 453 PRO HD2 H N N 454 PRO HD3 H N N 455 PRO HXT H N N 456 SER N N N N 457 SER CA C N S 458 SER C C N N 459 SER O O N N 460 SER CB C N N 461 SER OG O N N 462 SER OXT O N N 463 SER H H N N 464 SER H2 H N N 465 SER HA H N N 466 SER HB2 H N N 467 SER HB3 H N N 468 SER HG H N N 469 SER HXT H N N 470 THR N N N N 471 THR CA C N S 472 THR C C N N 473 THR O O N N 474 THR CB C N R 475 THR OG1 O N N 476 THR CG2 C N N 477 THR OXT O N N 478 THR H H N N 479 THR H2 H N N 480 THR HA H N N 481 THR HB H N N 482 THR HG1 H N N 483 THR HG21 H N N 484 THR HG22 H N N 485 THR HG23 H N N 486 THR HXT H N N 487 TRP N N N N 488 TRP CA C N S 489 TRP C C N N 490 TRP O O N N 491 TRP CB C N N 492 TRP CG C Y N 493 TRP CD1 C Y N 494 TRP CD2 C Y N 495 TRP NE1 N Y N 496 TRP CE2 C Y N 497 TRP CE3 C Y N 498 TRP CZ2 C Y N 499 TRP CZ3 C Y N 500 TRP CH2 C Y N 501 TRP OXT O N N 502 TRP H H N N 503 TRP H2 H N N 504 TRP HA H N N 505 TRP HB2 H N N 506 TRP HB3 H N N 507 TRP HD1 H N N 508 TRP HE1 H N N 509 TRP HE3 H N N 510 TRP HZ2 H N N 511 TRP HZ3 H N N 512 TRP HH2 H N N 513 TRP HXT H N N 514 TYR N N N N 515 TYR CA C N S 516 TYR C C N N 517 TYR O O N N 518 TYR CB C N N 519 TYR CG C Y N 520 TYR CD1 C Y N 521 TYR CD2 C Y N 522 TYR CE1 C Y N 523 TYR CE2 C Y N 524 TYR CZ C Y N 525 TYR OH O N N 526 TYR OXT O N N 527 TYR H H N N 528 TYR H2 H N N 529 TYR HA H N N 530 TYR HB2 H N N 531 TYR HB3 H N N 532 TYR HD1 H N N 533 TYR HD2 H N N 534 TYR HE1 H N N 535 TYR HE2 H N N 536 TYR HH H N N 537 TYR HXT H N N 538 URA N1 N N N 539 URA C2 C N N 540 URA O2 O N N 541 URA N3 N N N 542 URA C4 C N N 543 URA O4 O N N 544 URA C5 C N N 545 URA C6 C N N 546 URA HN1 H N N 547 URA HN3 H N N 548 URA H5 H N N 549 URA H6 H N N 550 VAL N N N N 551 VAL CA C N S 552 VAL C C N N 553 VAL O O N N 554 VAL CB C N N 555 VAL CG1 C N N 556 VAL CG2 C N N 557 VAL OXT O N N 558 VAL H H N N 559 VAL H2 H N N 560 VAL HA H N N 561 VAL HB H N N 562 VAL HG11 H N N 563 VAL HG12 H N N 564 VAL HG13 H N N 565 VAL HG21 H N N 566 VAL HG22 H N N 567 VAL HG23 H N N 568 VAL HXT H N N 569 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 ORP C1 O1 sing N N 386 ORP C1 C2 sing N N 387 ORP C1 O4 sing N N 388 ORP C1 H1 sing N N 389 ORP O1 HO1 sing N N 390 ORP C2 C3 sing N N 391 ORP C2 H21 sing N N 392 ORP C2 H22 sing N N 393 ORP C3 O3 sing N N 394 ORP C3 C4 sing N N 395 ORP C3 H3 sing N N 396 ORP O3 HO3 sing N N 397 ORP C4 O4 sing N N 398 ORP C4 C5 sing N N 399 ORP C4 H4 sing N N 400 ORP C5 O5 sing N N 401 ORP C5 H51 sing N N 402 ORP C5 H52 sing N N 403 ORP O5 P sing N N 404 ORP P O1P doub N N 405 ORP P O2P sing N N 406 ORP P O3P sing N N 407 ORP O2P HOP2 sing N N 408 ORP O3P HOP3 sing N N 409 PHE N CA sing N N 410 PHE N H sing N N 411 PHE N H2 sing N N 412 PHE CA C sing N N 413 PHE CA CB sing N N 414 PHE CA HA sing N N 415 PHE C O doub N N 416 PHE C OXT sing N N 417 PHE CB CG sing N N 418 PHE CB HB2 sing N N 419 PHE CB HB3 sing N N 420 PHE CG CD1 doub Y N 421 PHE CG CD2 sing Y N 422 PHE CD1 CE1 sing Y N 423 PHE CD1 HD1 sing N N 424 PHE CD2 CE2 doub Y N 425 PHE CD2 HD2 sing N N 426 PHE CE1 CZ doub Y N 427 PHE CE1 HE1 sing N N 428 PHE CE2 CZ sing Y N 429 PHE CE2 HE2 sing N N 430 PHE CZ HZ sing N N 431 PHE OXT HXT sing N N 432 PRO N CA sing N N 433 PRO N CD sing N N 434 PRO N H sing N N 435 PRO CA C sing N N 436 PRO CA CB sing N N 437 PRO CA HA sing N N 438 PRO C O doub N N 439 PRO C OXT sing N N 440 PRO CB CG sing N N 441 PRO CB HB2 sing N N 442 PRO CB HB3 sing N N 443 PRO CG CD sing N N 444 PRO CG HG2 sing N N 445 PRO CG HG3 sing N N 446 PRO CD HD2 sing N N 447 PRO CD HD3 sing N N 448 PRO OXT HXT sing N N 449 SER N CA sing N N 450 SER N H sing N N 451 SER N H2 sing N N 452 SER CA C sing N N 453 SER CA CB sing N N 454 SER CA HA sing N N 455 SER C O doub N N 456 SER C OXT sing N N 457 SER CB OG sing N N 458 SER CB HB2 sing N N 459 SER CB HB3 sing N N 460 SER OG HG sing N N 461 SER OXT HXT sing N N 462 THR N CA sing N N 463 THR N H sing N N 464 THR N H2 sing N N 465 THR CA C sing N N 466 THR CA CB sing N N 467 THR CA HA sing N N 468 THR C O doub N N 469 THR C OXT sing N N 470 THR CB OG1 sing N N 471 THR CB CG2 sing N N 472 THR CB HB sing N N 473 THR OG1 HG1 sing N N 474 THR CG2 HG21 sing N N 475 THR CG2 HG22 sing N N 476 THR CG2 HG23 sing N N 477 THR OXT HXT sing N N 478 TRP N CA sing N N 479 TRP N H sing N N 480 TRP N H2 sing N N 481 TRP CA C sing N N 482 TRP CA CB sing N N 483 TRP CA HA sing N N 484 TRP C O doub N N 485 TRP C OXT sing N N 486 TRP CB CG sing N N 487 TRP CB HB2 sing N N 488 TRP CB HB3 sing N N 489 TRP CG CD1 doub Y N 490 TRP CG CD2 sing Y N 491 TRP CD1 NE1 sing Y N 492 TRP CD1 HD1 sing N N 493 TRP CD2 CE2 doub Y N 494 TRP CD2 CE3 sing Y N 495 TRP NE1 CE2 sing Y N 496 TRP NE1 HE1 sing N N 497 TRP CE2 CZ2 sing Y N 498 TRP CE3 CZ3 doub Y N 499 TRP CE3 HE3 sing N N 500 TRP CZ2 CH2 doub Y N 501 TRP CZ2 HZ2 sing N N 502 TRP CZ3 CH2 sing Y N 503 TRP CZ3 HZ3 sing N N 504 TRP CH2 HH2 sing N N 505 TRP OXT HXT sing N N 506 TYR N CA sing N N 507 TYR N H sing N N 508 TYR N H2 sing N N 509 TYR CA C sing N N 510 TYR CA CB sing N N 511 TYR CA HA sing N N 512 TYR C O doub N N 513 TYR C OXT sing N N 514 TYR CB CG sing N N 515 TYR CB HB2 sing N N 516 TYR CB HB3 sing N N 517 TYR CG CD1 doub Y N 518 TYR CG CD2 sing Y N 519 TYR CD1 CE1 sing Y N 520 TYR CD1 HD1 sing N N 521 TYR CD2 CE2 doub Y N 522 TYR CD2 HD2 sing N N 523 TYR CE1 CZ doub Y N 524 TYR CE1 HE1 sing N N 525 TYR CE2 CZ sing Y N 526 TYR CE2 HE2 sing N N 527 TYR CZ OH sing N N 528 TYR OH HH sing N N 529 TYR OXT HXT sing N N 530 URA N1 C2 sing N N 531 URA N1 C6 sing N N 532 URA N1 HN1 sing N N 533 URA C2 O2 doub N N 534 URA C2 N3 sing N N 535 URA N3 C4 sing N N 536 URA N3 HN3 sing N N 537 URA C4 O4 doub N N 538 URA C4 C5 sing N N 539 URA C5 C6 doub N N 540 URA C5 H5 sing N N 541 URA C6 H6 sing N N 542 VAL N CA sing N N 543 VAL N H sing N N 544 VAL N H2 sing N N 545 VAL CA C sing N N 546 VAL CA CB sing N N 547 VAL CA HA sing N N 548 VAL C O doub N N 549 VAL C OXT sing N N 550 VAL CB CG1 sing N N 551 VAL CB CG2 sing N N 552 VAL CB HB sing N N 553 VAL CG1 HG11 sing N N 554 VAL CG1 HG12 sing N N 555 VAL CG1 HG13 sing N N 556 VAL CG2 HG21 sing N N 557 VAL CG2 HG22 sing N N 558 VAL CG2 HG23 sing N N 559 VAL OXT HXT sing N N 560 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4SKN 'double helix' 4SKN 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 4 1_555 B DC 8 1_555 0.483 -0.536 1.682 9.456 -23.396 -1.348 1 A_DG4:DC28_B A 4 ? B 28 ? ? ? 1 A DG 6 1_555 B DC 6 1_555 -0.439 -0.017 -0.187 -11.492 -4.722 -4.258 2 A_DG6:DC26_B A 6 ? B 26 ? 19 1 1 A DG 7 1_555 B DC 5 1_555 0.471 0.207 0.174 15.929 -0.355 0.140 3 A_DG7:DC25_B A 7 ? B 25 ? 19 1 1 A DC 8 1_555 B DG 4 1_555 -0.037 -0.099 -0.427 11.628 -13.792 -2.324 4 A_DC8:DG24_B A 8 ? B 24 ? 19 1 1 A DT 9 1_555 B DA 3 1_555 -0.481 -0.146 0.244 -5.797 -14.204 3.371 5 A_DT9:DA23_B A 9 ? B 23 ? 20 1 1 A DT 10 1_555 B DA 2 1_555 0.662 0.243 0.506 -14.706 -9.172 1.153 6 A_DT10:DA22_B A 10 ? B 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 6 1_555 B DC 6 1_555 A DG 7 1_555 B DC 5 1_555 0.004 -0.568 2.736 -2.677 -6.346 33.659 -0.115 -0.365 2.785 -10.818 4.563 34.337 1 AA_DG6DG7:DC25DC26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A DG 7 1_555 B DC 5 1_555 A DC 8 1_555 B DG 4 1_555 0.736 -0.447 3.243 10.833 7.783 28.077 -2.360 0.746 3.083 15.018 -20.901 31.027 2 AA_DG7DC8:DG24DC25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A DC 8 1_555 B DG 4 1_555 A DT 9 1_555 B DA 3 1_555 0.527 -0.473 3.691 1.024 10.837 35.739 -2.334 -0.673 3.422 17.173 -1.622 37.308 3 AA_DC8DT9:DA23DG24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A DT 9 1_555 B DA 3 1_555 A DT 10 1_555 B DA 2 1_555 -0.209 -0.031 3.618 -4.978 4.014 37.167 -0.625 -0.392 3.593 6.240 7.739 37.694 4 AA_DT9DT10:DA22DA23_BB A 9 ? B 23 ? A 10 ? B 22 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 URACIL URA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AKZ _pdbx_initial_refinement_model.details 'PDB ENTRY 1AKZ' #