data_4TN5 # _entry.id 4TN5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4TN5 WWPDB D_1000201896 # _pdbx_database_PDB_obs_spr.date 2015-06-10 _pdbx_database_PDB_obs_spr.details ? _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.pdb_id 4TN5 _pdbx_database_PDB_obs_spr.replace_pdb_id 4JXD # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4TN5 _pdbx_database_status.recvd_initial_deposition_date 2014-06-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, M.S.' 1 'Shin, D.H.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'High-accuracy protein modeling and its application to molecular replacement of crystallographic phasing' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, M.S.' 1 primary 'Shin, D.H.' 2 primary 'Lee, J.' 3 primary 'Joo, K.' 4 primary 'Park, J.' 5 primary 'Lee, D.' 6 primary 'Berry, E.A.' 7 primary 'Jhon, G.-J.' 8 # _cell.entry_id 4TN5 _cell.length_a 33.110 _cell.length_b 33.110 _cell.length_c 154.281 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TN5 _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fructose-like phosphotransferase enzyme IIB component 3' 12792.314 2 2.7.1.69 ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 water nat water 18.015 17 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PTS system fructose-like EIIB component 3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)AYLVAVTACVSGVAHTY(MSE)AAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAE RFEHCRYVQCSIYAFLREPQRV(MSE)SAVRKVLSAPQQTHLILE ; _entity_poly.pdbx_seq_one_letter_code_can ;MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYV QCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ALA n 1 3 TYR n 1 4 LEU n 1 5 VAL n 1 6 ALA n 1 7 VAL n 1 8 THR n 1 9 ALA n 1 10 CYS n 1 11 VAL n 1 12 SER n 1 13 GLY n 1 14 VAL n 1 15 ALA n 1 16 HIS n 1 17 THR n 1 18 TYR n 1 19 MSE n 1 20 ALA n 1 21 ALA n 1 22 GLU n 1 23 ARG n 1 24 LEU n 1 25 GLU n 1 26 LYS n 1 27 LEU n 1 28 CYS n 1 29 LEU n 1 30 LEU n 1 31 GLU n 1 32 LYS n 1 33 TRP n 1 34 GLY n 1 35 VAL n 1 36 SER n 1 37 ILE n 1 38 GLU n 1 39 THR n 1 40 GLN n 1 41 GLY n 1 42 ALA n 1 43 LEU n 1 44 GLY n 1 45 THR n 1 46 GLU n 1 47 ASN n 1 48 ARG n 1 49 LEU n 1 50 ALA n 1 51 ASP n 1 52 GLU n 1 53 ASP n 1 54 ILE n 1 55 ARG n 1 56 ARG n 1 57 ALA n 1 58 ASP n 1 59 VAL n 1 60 ALA n 1 61 LEU n 1 62 LEU n 1 63 ILE n 1 64 THR n 1 65 ASP n 1 66 ILE n 1 67 GLU n 1 68 LEU n 1 69 ALA n 1 70 GLY n 1 71 ALA n 1 72 GLU n 1 73 ARG n 1 74 PHE n 1 75 GLU n 1 76 HIS n 1 77 CYS n 1 78 ARG n 1 79 TYR n 1 80 VAL n 1 81 GLN n 1 82 CYS n 1 83 SER n 1 84 ILE n 1 85 TYR n 1 86 ALA n 1 87 PHE n 1 88 LEU n 1 89 ARG n 1 90 GLU n 1 91 PRO n 1 92 GLN n 1 93 ARG n 1 94 VAL n 1 95 MSE n 1 96 SER n 1 97 ALA n 1 98 VAL n 1 99 ARG n 1 100 LYS n 1 101 VAL n 1 102 LEU n 1 103 SER n 1 104 ALA n 1 105 PRO n 1 106 GLN n 1 107 GLN n 1 108 THR n 1 109 HIS n 1 110 LEU n 1 111 ILE n 1 112 LEU n 1 113 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 113 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'frwD, yijN, b3953, JW3925' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTFB3_ECOLI _struct_ref.pdbx_db_accession P32676 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYV QCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4TN5 A 1 ? 113 ? P32676 1 ? 113 ? 1 113 2 1 4TN5 B 1 ? 113 ? P32676 1 ? 113 ? 1 113 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4TN5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 36.3 _exptl_crystal.description '0.1M BIS-TRIS, 10MM NICKEL (II) HLORIDE, 10MM CESIUM CHLORIDE, 20% PEG MME 2000, PH 8.5,' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M BIS-TRIS, 10MM NICKEL (II) CHLORIDE, 10MM CESIUM CHLORIDE, 20% PEG MME 2000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2005-06-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'SILICON DOUBLE CRYSTAL' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.48690 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.48690 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4TN5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.28 _reflns.d_resolution_low 51.43 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7223 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 83.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4TN5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7166 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 51.427 _refine.ls_d_res_high 2.285 _refine.ls_percent_reflns_obs 83.43 _refine.ls_R_factor_obs 0.2302 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2226 _refine.ls_R_factor_R_free 0.2990 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.01 _refine.ls_number_reflns_R_free 717 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.35 _refine.pdbx_overall_phase_error 41.63 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1768 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1786 _refine_hist.d_res_high 2.285 _refine_hist.d_res_low 51.427 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1792 'X-RAY DIFFRACTION' ? f_angle_d 1.274 ? ? 2426 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.498 ? ? 664 'X-RAY DIFFRACTION' ? f_chiral_restr 0.087 ? ? 288 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 310 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2849 2.4613 468 0.2844 30.00 0.4393 . . 49 . . . . 'X-RAY DIFFRACTION' . 2.4613 2.7090 1393 0.2952 89.00 0.3776 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.7090 3.1010 1518 0.2669 100.00 0.3725 . . 172 . . . . 'X-RAY DIFFRACTION' . 3.1010 3.9067 1539 0.2315 100.00 0.3149 . . 177 . . . . 'X-RAY DIFFRACTION' . 3.9067 51.4400 1531 0.1895 99.00 0.2462 . . 177 . . . . # _struct.entry_id 4TN5 _struct.title 'Crystal Structure of Predicted Fructose Specific IIB from Escherichia Coli' _struct.pdbx_descriptor 'FRUCTOSE-LIKE PHOSPHOTRANSFERASE ENZYME IIB COMPONENT 3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4TN5 _struct_keywords.text 'IIB, EIIB(fruc), alpha/beta, phosphoryl group transferase, EIIA, EIIC, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 17 ? GLU A 31 ? THR A 17 GLU A 31 1 ? 15 HELX_P HELX_P2 AA2 ALA A 50 ? ALA A 57 ? ALA A 50 ALA A 57 1 ? 8 HELX_P HELX_P3 AA3 GLY A 70 ? GLU A 75 ? GLY A 70 GLU A 75 5 ? 6 HELX_P HELX_P4 AA4 SER A 83 ? GLU A 90 ? SER A 83 GLU A 90 1 ? 8 HELX_P HELX_P5 AA5 PRO A 91 ? ALA A 104 ? PRO A 91 ALA A 104 1 ? 14 HELX_P HELX_P6 AA6 ALA B 15 ? GLU B 31 ? ALA B 15 GLU B 31 1 ? 17 HELX_P HELX_P7 AA7 ALA B 50 ? ALA B 57 ? ALA B 50 ALA B 57 1 ? 8 HELX_P HELX_P8 AA8 GLY B 70 ? GLU B 75 ? GLY B 70 GLU B 75 5 ? 6 HELX_P HELX_P9 AA9 SER B 83 ? GLU B 90 ? SER B 83 GLU B 90 1 ? 8 HELX_P HELX_P10 AB1 PRO B 91 ? ALA B 104 ? PRO B 91 ALA B 104 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MSE 1 C ? ? ? 1_555 A ALA 2 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A TYR 18 C ? ? ? 1_555 A MSE 19 N ? ? A TYR 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale both ? A MSE 19 C ? ? ? 1_555 A ALA 20 N ? ? A MSE 19 A ALA 20 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A VAL 94 C ? ? ? 1_555 A MSE 95 N ? ? A VAL 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale both ? A MSE 95 C ? ? ? 1_555 A SER 96 N ? ? A MSE 95 A SER 96 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale both ? B MSE 1 C ? ? ? 1_555 B ALA 2 N ? ? B MSE 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale both ? B TYR 18 C ? ? ? 1_555 B MSE 19 N ? ? B TYR 18 B MSE 19 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale both ? B MSE 19 C ? ? ? 1_555 B ALA 20 N ? ? B MSE 19 B ALA 20 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale both ? B VAL 94 C ? ? ? 1_555 B MSE 95 N ? ? B VAL 94 B MSE 95 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale both ? B MSE 95 C ? ? ? 1_555 B SER 96 N ? ? B MSE 95 B SER 96 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 12 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? parallel AA1 8 9 ? parallel AA1 9 10 ? parallel AA1 10 11 ? parallel AA1 11 12 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 44 ? GLU A 46 ? GLY A 44 GLU A 46 AA1 2 GLY A 34 ? GLY A 41 ? GLY A 34 GLY A 41 AA1 3 TYR A 3 ? ALA A 9 ? TYR A 3 ALA A 9 AA1 4 VAL A 59 ? THR A 64 ? VAL A 59 THR A 64 AA1 5 TYR A 79 ? CYS A 82 ? TYR A 79 CYS A 82 AA1 6 THR A 108 ? ILE A 111 ? THR A 108 ILE A 111 AA1 7 GLN B 107 ? ILE B 111 ? GLN B 107 ILE B 111 AA1 8 TYR B 79 ? CYS B 82 ? TYR B 79 CYS B 82 AA1 9 VAL B 59 ? THR B 64 ? VAL B 59 THR B 64 AA1 10 TYR B 3 ? ALA B 9 ? TYR B 3 ALA B 9 AA1 11 GLY B 34 ? GLY B 41 ? GLY B 34 GLY B 41 AA1 12 GLY B 44 ? GLU B 46 ? GLY B 44 GLU B 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 46 ? O GLU A 46 N THR A 39 ? N THR A 39 AA1 2 3 O GLU A 38 ? O GLU A 38 N ALA A 6 ? N ALA A 6 AA1 3 4 N VAL A 5 ? N VAL A 5 O LEU A 61 ? O LEU A 61 AA1 4 5 N LEU A 62 ? N LEU A 62 O VAL A 80 ? O VAL A 80 AA1 5 6 N GLN A 81 ? N GLN A 81 O LEU A 110 ? O LEU A 110 AA1 6 7 N HIS A 109 ? N HIS A 109 O HIS B 109 ? O HIS B 109 AA1 7 8 O LEU B 110 ? O LEU B 110 N TYR B 79 ? N TYR B 79 AA1 8 9 O VAL B 80 ? O VAL B 80 N LEU B 62 ? N LEU B 62 AA1 9 10 O LEU B 61 ? O LEU B 61 N VAL B 5 ? N VAL B 5 AA1 10 11 N LEU B 4 ? N LEU B 4 O GLY B 34 ? O GLY B 34 AA1 11 12 N THR B 39 ? N THR B 39 O GLU B 46 ? O GLU B 46 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NI _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue NI A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 109 ? HIS A 109 . ? 1_555 ? 2 AC1 4 HIS B 109 ? HIS B 109 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH B 206 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH B 207 . ? 1_555 ? # _atom_sites.entry_id 4TN5 _atom_sites.fract_transf_matrix[1][1] 0.030202 _atom_sites.fract_transf_matrix[1][2] 0.017437 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034875 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006482 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 MSE 19 19 19 MSE MSE A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 CYS 82 82 82 CYS CYS A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 MSE 95 95 95 MSE MSE A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 HIS 109 109 109 HIS HIS A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLU 113 113 113 GLU GLU A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 TYR 3 3 3 TYR TYR B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 CYS 10 10 10 CYS CYS B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 SER 12 12 12 SER SER B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 ALA 15 15 15 ALA ALA B . n B 1 16 HIS 16 16 16 HIS HIS B . n B 1 17 THR 17 17 17 THR THR B . n B 1 18 TYR 18 18 18 TYR TYR B . n B 1 19 MSE 19 19 19 MSE MSE B . n B 1 20 ALA 20 20 20 ALA ALA B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 TRP 33 33 33 TRP TRP B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 GLY 44 44 44 GLY GLY B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 ASN 47 47 47 ASN ASN B . n B 1 48 ARG 48 48 48 ARG ARG B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 ASP 51 51 51 ASP ASP B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 ARG 55 55 55 ARG ARG B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 ALA 57 57 57 ALA ALA B . n B 1 58 ASP 58 58 58 ASP ASP B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 ASP 65 65 65 ASP ASP B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 GLU 67 67 67 GLU GLU B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 ARG 73 73 73 ARG ARG B . n B 1 74 PHE 74 74 74 PHE PHE B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 HIS 76 76 76 HIS HIS B . n B 1 77 CYS 77 77 77 CYS CYS B . n B 1 78 ARG 78 78 78 ARG ARG B . n B 1 79 TYR 79 79 79 TYR TYR B . n B 1 80 VAL 80 80 80 VAL VAL B . n B 1 81 GLN 81 81 81 GLN GLN B . n B 1 82 CYS 82 82 82 CYS CYS B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 TYR 85 85 85 TYR TYR B . n B 1 86 ALA 86 86 86 ALA ALA B . n B 1 87 PHE 87 87 87 PHE PHE B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ARG 89 89 89 ARG ARG B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 PRO 91 91 91 PRO PRO B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ARG 93 93 93 ARG ARG B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 MSE 95 95 95 MSE MSE B . n B 1 96 SER 96 96 96 SER SER B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 VAL 98 98 98 VAL VAL B . n B 1 99 ARG 99 99 99 ARG ARG B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 VAL 101 101 101 VAL VAL B . n B 1 102 LEU 102 102 102 LEU LEU B . n B 1 103 SER 103 103 103 SER SER B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 PRO 105 105 105 PRO PRO B . n B 1 106 GLN 106 106 106 GLN GLN B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 THR 108 108 108 THR THR B . n B 1 109 HIS 109 109 109 HIS HIS B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 ILE 111 111 111 ILE ILE B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 GLU 113 113 113 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI 1 201 1 NI NI A . D 3 HOH 1 301 5 HOH HOH A . D 3 HOH 2 302 7 HOH HOH A . D 3 HOH 3 303 4 HOH HOH A . D 3 HOH 4 304 6 HOH HOH A . D 3 HOH 5 305 9 HOH HOH A . D 3 HOH 6 306 10 HOH HOH A . D 3 HOH 7 307 12 HOH HOH A . D 3 HOH 8 308 15 HOH HOH A . D 3 HOH 9 309 16 HOH HOH A . E 3 HOH 1 201 11 HOH HOH B . E 3 HOH 2 202 13 HOH HOH B . E 3 HOH 3 203 14 HOH HOH B . E 3 HOH 4 204 3 HOH HOH B . E 3 HOH 5 205 17 HOH HOH B . E 3 HOH 6 206 1 HOH HOH B . E 3 HOH 7 207 2 HOH HOH B . E 3 HOH 8 208 8 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET 'modified residue' 2 A MSE 19 A MSE 19 ? MET 'modified residue' 3 A MSE 95 A MSE 95 ? MET 'modified residue' 4 B MSE 1 B MSE 1 ? MET 'modified residue' 5 B MSE 19 B MSE 19 ? MET 'modified residue' 6 B MSE 95 B MSE 95 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 970 ? 1 MORE -11 ? 1 'SSA (A^2)' 11890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-06-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 24.5925 _pdbx_refine_tls.origin_y -4.6085 _pdbx_refine_tls.origin_z 0.1919 _pdbx_refine_tls.T[1][1] 0.1726 _pdbx_refine_tls.T[2][2] 0.1407 _pdbx_refine_tls.T[3][3] 0.2107 _pdbx_refine_tls.T[1][2] -0.0033 _pdbx_refine_tls.T[1][3] -0.0307 _pdbx_refine_tls.T[2][3] -0.0127 _pdbx_refine_tls.L[1][1] 0.8872 _pdbx_refine_tls.L[2][2] 0.6521 _pdbx_refine_tls.L[3][3] 5.2794 _pdbx_refine_tls.L[1][2] 0.6100 _pdbx_refine_tls.L[1][3] 2.1633 _pdbx_refine_tls.L[2][3] 1.5285 _pdbx_refine_tls.S[1][1] 0.0307 _pdbx_refine_tls.S[1][2] -0.0014 _pdbx_refine_tls.S[1][3] -0.1211 _pdbx_refine_tls.S[2][1] -0.0261 _pdbx_refine_tls.S[2][2] -0.0109 _pdbx_refine_tls.S[2][3] -0.0807 _pdbx_refine_tls.S[3][1] -0.1675 _pdbx_refine_tls.S[3][2] -0.1231 _pdbx_refine_tls.S[3][3] 0.1894 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(phenix.refine: dev_1420)' _software.pdbx_ordinal 1 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'NRF by MEST (NCRC)' 'Korea, Republic Of' 2012-0000952 1 'NRF by MEST (CRC)' 'Korea, Republic Of' 2010K000266 2 'NRF by MEST' 'Korea, Republic Of' 2008-331-C0023 3 'NRF by MEST' 'Korea, Republic Of' 2010-0003907 4 'NRF by MEST' 'Korea, Republic Of' 2013R1A1A1A05008769 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH #