data_4U6L # _entry.id 4U6L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4U6L pdb_00004u6l 10.2210/pdb4u6l/pdb WWPDB D_1000202902 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4U6K unspecified PDB . 4U6M unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4U6L _pdbx_database_status.recvd_initial_deposition_date 2014-07-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Nomura, Y.' 2 'Kitahara, Y.' 3 'Obika, S.' 4 'Torigoe, H.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 2354 _citation.page_last 2357 _citation.title ;The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c5cc08300a _citation.pdbx_database_id_PubMed 26731288 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Nomura, Y.' 2 ? primary 'Kitahara, Y.' 3 ? primary 'Obika, S.' 4 ? primary 'Torigoe, H.' 5 ? # _cell.length_a 48.520 _cell.length_b 48.520 _cell.length_c 46.520 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4U6L _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') ; 2981.895 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3') ; 2660.788 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 4 non-polymer syn 'STRONTIUM ION' 87.620 2 ? ? ? ? 5 water nat water 18.015 60 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAAGAAGAG GAAGAAGAG A ? 2 polydeoxyribonucleotide no yes '(5CM)(DT)(DC)(DT)(DT)(DC)(DT)(DT)(5CM)' CTCTTCTTC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 A n 1 9 G n 2 1 5CM n 2 2 DT n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DT n 2 9 5CM n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 9 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4U6L 4U6L ? 1 ? 1 2 PDB 4U6L 4U6L ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4U6L A 1 ? 9 ? 4U6L 1 ? 9 ? 1 9 2 2 4U6L B 1 ? 9 ? 4U6L 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4U6L _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Na Cacodylate, Hexammine Cobalt Chloride, SrCl2, MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.60366 1.0 2 1.60546 1.0 3 1.0 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '1.60366, 1.60546, 1.0' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4U6L _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 42.020 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4976 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.760 _reflns.pdbx_Rmerge_I_obs 0.030 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.960 _reflns.pdbx_scaling_rejects 405 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 53970 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.900 1.970 ? 6.400 5493 ? ? 503 ? 100.000 ? ? ? ? 0.316 ? ? ? ? ? ? ? ? 10.830 ? 1.180 ? ? ? ? 44 1 1 ? ? 1.970 2.050 ? 7.700 5415 ? ? 494 ? 100.000 ? ? ? ? 0.261 ? ? ? ? ? ? ? ? 10.850 ? 1.140 ? ? ? ? 53 2 1 ? ? 2.050 2.140 ? 10.300 5356 ? ? 490 ? 100.000 ? ? ? ? 0.193 ? ? ? ? ? ? ? ? 10.810 ? 1.150 ? ? ? ? 61 3 1 ? ? 2.140 2.250 ? 11.600 5422 ? ? 491 ? 100.000 ? ? ? ? 0.177 ? ? ? ? ? ? ? ? 10.910 ? 1.200 ? ? ? ? 63 4 1 ? ? 2.250 2.390 ? 14.500 5553 ? ? 505 ? 100.000 ? ? ? ? 0.111 ? ? ? ? ? ? ? ? 10.910 ? 0.920 ? ? ? ? 42 5 1 ? ? 2.390 2.580 ? 18.300 5404 ? ? 495 ? 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 10.860 ? 0.840 ? ? ? ? 26 6 1 ? ? 2.580 2.840 ? 22.900 5447 ? ? 500 ? 100.000 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 10.840 ? 0.790 ? ? ? ? 27 7 1 ? ? 2.840 3.250 ? 37.700 5283 ? ? 495 ? 100.000 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 10.600 ? 0.760 ? ? ? ? 35 8 1 ? ? 3.250 4.090 ? 79.800 5049 ? ? 496 ? 100.000 ? ? ? ? 0.019 ? ? ? ? ? ? ? ? 10.120 ? 0.770 ? ? ? ? 30 9 1 ? ? 4.090 42.020 ? 118.100 5548 ? ? 507 ? 98.100 ? ? ? ? 0.015 ? ? ? ? ? ? ? ? 10.900 ? 0.860 ? ? ? ? 24 10 1 ? ? # _refine.aniso_B[1][1] 0.4270 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.4270 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.8540 _refine.B_iso_max 101.050 _refine.B_iso_mean 36.1204 _refine.B_iso_min 22.100 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4U6L _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 42.02 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4975 _refine.ls_number_reflns_R_free 517 _refine.ls_number_reflns_R_work 4458 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8000 _refine.ls_percent_reflns_R_free 10.4000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2752 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2505 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol 69.6493 _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.7831 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 42.02 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 463 _refine_hist.pdbx_number_residues_total 17 _refine_hist.pdbx_B_iso_mean_ligand 44.25 _refine_hist.pdbx_B_iso_mean_solvent 43.12 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 374 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? ? ? c_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.268 ? ? ? c_angle_d ? ? 'X-RAY DIFFRACTION' ? 1.724 1.500 ? ? c_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.328 2.000 ? ? c_mcangle_it ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 1.9000 1.9700 . . 52 449 100.0000 . . . 0.3465 . 0.3450 . . . . . . . . 'X-RAY DIFFRACTION' 1.9700 2.0500 . . 68 426 100.0000 . . . 0.3246 . 0.3106 . . . . . . . . 'X-RAY DIFFRACTION' 2.0500 2.1400 . . 45 443 100.0000 . . . 0.4005 . 0.3325 . . . . . . . . 'X-RAY DIFFRACTION' 2.1400 2.2500 . . 47 448 100.0000 . . . 0.3785 . 0.3641 . . . . . . . . 'X-RAY DIFFRACTION' 2.2500 2.3900 . . 45 460 100.0000 . . . 0.2918 . 0.3429 . . . . . . . . 'X-RAY DIFFRACTION' 2.3900 2.5800 . . 54 441 100.0000 . . . 0.4266 . 0.3289 . . . . . . . . 'X-RAY DIFFRACTION' 2.5800 2.8400 . . 49 451 100.0000 . . . 0.3933 . 0.3096 . . . . . . . . 'X-RAY DIFFRACTION' 2.8400 3.2500 . . 56 439 100.0000 . . . 0.2431 . 0.2421 . . . . . . . . 'X-RAY DIFFRACTION' 3.2500 4.0900 . . 55 441 100.0000 . . . 0.2362 . 0.1965 . . . . . . . . 'X-RAY DIFFRACTION' 4.0900 42.02 . . 46 460 97.7000 . . . 0.2178 . 0.2103 . . . . . . . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 nco_xplor.param ? 'X-RAY DIFFRACTION' 2 dna-rna_201312.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param ? # _struct.entry_id 4U6L _struct.title 'Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4U6L _struct_keywords.text 'DNA/RNA hybrid duplex, antisense, DNA-RNA complex' _struct_keywords.pdbx_keywords DNA/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DT 2 P ? ? B 5CM 1 B DT 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? B DT 8 "O3'" ? ? ? 1_555 B 5CM 9 P ? ? B DT 8 B 5CM 9 1_555 ? ? ? ? ? ? ? 1.611 ? ? metalc1 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 102 A HOH 219 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc2 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 102 A HOH 224 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc3 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 102 A HOH 225 1_555 ? ? ? ? ? ? ? 2.661 ? ? metalc4 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 102 A HOH 226 1_555 ? ? ? ? ? ? ? 2.877 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B 5CM 9 N3 ? ? A G 1 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B 5CM 9 O2 ? ? A G 1 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B 5CM 9 N4 ? ? A G 1 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B DT 8 N3 ? ? A A 2 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B DT 8 O4 ? ? A A 2 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A 3 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A 3 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B DT 5 N3 ? ? A A 5 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B DT 5 O4 ? ? A A 5 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 4 N3 ? ? A A 6 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 4 O4 ? ? A A 6 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B DC 3 N3 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B DC 3 O2 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B DC 3 N4 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B DT 2 N3 ? ? A A 8 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B DT 2 O4 ? ? A A 8 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B 5CM 1 N3 ? ? A G 9 B 5CM 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B 5CM 1 O2 ? ? A G 9 B 5CM 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B 5CM 1 N4 ? ? A G 9 B 5CM 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 101 ? 5 'binding site for residue NCO A 101' AC2 Software A SR 102 ? 5 'binding site for residue SR A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 G A 1 ? G A 1 . ? 1_555 ? 2 AC1 5 HOH F . ? HOH A 208 . ? 1_555 ? 3 AC1 5 HOH F . ? HOH A 216 . ? 1_555 ? 4 AC1 5 DT B 4 ? DT B 4 . ? 6_555 ? 5 AC1 5 DT B 5 ? DT B 5 . ? 6_555 ? 6 AC2 5 HOH F . ? HOH A 219 . ? 1_555 ? 7 AC2 5 HOH F . ? HOH A 223 . ? 1_555 ? 8 AC2 5 HOH F . ? HOH A 224 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 225 . ? 1_555 ? 10 AC2 5 HOH F . ? HOH A 226 . ? 1_555 ? # _atom_sites.entry_id 4U6L _atom_sites.fract_transf_matrix[1][1] 0.020610 _atom_sites.fract_transf_matrix[1][2] 0.011899 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023798 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021496 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P SR # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n B 2 1 5CM 1 1 1 5CM ZZZ B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 5CM 9 9 9 5CM ZZZ B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NCO 1 101 51 NCO NCO A . D 4 SR 1 102 61 SR SR2 A . E 4 SR 1 101 62 SR SR2 B . F 5 HOH 1 201 119 HOH HOH A . F 5 HOH 2 202 131 HOH HOH A . F 5 HOH 3 203 158 HOH HOH A . F 5 HOH 4 204 122 HOH HOH A . F 5 HOH 5 205 118 HOH HOH A . F 5 HOH 6 206 137 HOH HOH A . F 5 HOH 7 207 156 HOH HOH A . F 5 HOH 8 208 141 HOH HOH A . F 5 HOH 9 209 157 HOH HOH A . F 5 HOH 10 210 160 HOH HOH A . F 5 HOH 11 211 127 HOH HOH A . F 5 HOH 12 212 159 HOH HOH A . F 5 HOH 13 213 103 HOH HOH A . F 5 HOH 14 214 106 HOH HOH A . F 5 HOH 15 215 107 HOH HOH A . F 5 HOH 16 216 116 HOH HOH A . F 5 HOH 17 217 121 HOH HOH A . F 5 HOH 18 218 124 HOH HOH A . F 5 HOH 19 219 134 HOH HOH A . F 5 HOH 20 220 138 HOH HOH A . F 5 HOH 21 221 139 HOH HOH A . F 5 HOH 22 222 140 HOH HOH A . F 5 HOH 23 223 146 HOH HOH A . F 5 HOH 24 224 149 HOH HOH A . F 5 HOH 25 225 150 HOH HOH A . F 5 HOH 26 226 151 HOH HOH A . G 5 HOH 1 201 123 HOH HOH B . G 5 HOH 2 202 111 HOH HOH B . G 5 HOH 3 203 110 HOH HOH B . G 5 HOH 4 204 104 HOH HOH B . G 5 HOH 5 205 115 HOH HOH B . G 5 HOH 6 206 133 HOH HOH B . G 5 HOH 7 207 101 HOH HOH B . G 5 HOH 8 208 113 HOH HOH B . G 5 HOH 9 209 152 HOH HOH B . G 5 HOH 10 210 128 HOH HOH B . G 5 HOH 11 211 129 HOH HOH B . G 5 HOH 12 212 126 HOH HOH B . G 5 HOH 13 213 136 HOH HOH B . G 5 HOH 14 214 120 HOH HOH B . G 5 HOH 15 215 148 HOH HOH B . G 5 HOH 16 216 102 HOH HOH B . G 5 HOH 17 217 105 HOH HOH B . G 5 HOH 18 218 108 HOH HOH B . G 5 HOH 19 219 109 HOH HOH B . G 5 HOH 20 220 112 HOH HOH B . G 5 HOH 21 221 114 HOH HOH B . G 5 HOH 22 222 117 HOH HOH B . G 5 HOH 23 223 125 HOH HOH B . G 5 HOH 24 224 130 HOH HOH B . G 5 HOH 25 225 132 HOH HOH B . G 5 HOH 26 226 135 HOH HOH B . G 5 HOH 27 227 142 HOH HOH B . G 5 HOH 28 228 143 HOH HOH B . G 5 HOH 29 229 144 HOH HOH B . G 5 HOH 30 230 145 HOH HOH B . G 5 HOH 31 231 147 HOH HOH B . G 5 HOH 32 232 153 HOH HOH B . G 5 HOH 33 233 154 HOH HOH B . G 5 HOH 34 234 155 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1890 ? 1 MORE -37 ? 1 'SSA (A^2)' 3540 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 219 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? F HOH . ? A HOH 224 ? 1_555 111.1 ? 2 O ? F HOH . ? A HOH 219 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? F HOH . ? A HOH 225 ? 1_555 131.4 ? 3 O ? F HOH . ? A HOH 224 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? F HOH . ? A HOH 225 ? 1_555 71.7 ? 4 O ? F HOH . ? A HOH 219 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? F HOH . ? A HOH 226 ? 1_555 108.4 ? 5 O ? F HOH . ? A HOH 224 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? F HOH . ? A HOH 226 ? 1_555 140.5 ? 6 O ? F HOH . ? A HOH 225 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? F HOH . ? A HOH 226 ? 1_555 80.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-19 2 'Structure model' 1 1 2020-01-29 3 'Structure model' 1 2 2022-07-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' computing 2 2 'Structure model' diffrn_source 3 2 'Structure model' pdbx_struct_oper_list 4 2 'Structure model' software 5 3 'Structure model' citation 6 3 'Structure model' database_2 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_computing.pdbx_data_reduction_ds' 2 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 2 'Structure model' '_software.name' 5 3 'Structure model' '_citation.country' 6 3 'Structure model' '_citation.journal_abbrev' 7 3 'Structure model' '_citation.journal_id_CSD' 8 3 'Structure model' '_citation.journal_id_ISSN' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation.pdbx_database_id_DOI' 13 3 'Structure model' '_citation.pdbx_database_id_PubMed' 14 3 'Structure model' '_citation.title' 15 3 'Structure model' '_citation.year' 16 3 'Structure model' '_database_2.pdbx_DOI' 17 3 'Structure model' '_database_2.pdbx_database_accession' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.000 _diffrn_reflns.pdbx_d_res_low 24.280 _diffrn_reflns.pdbx_number_obs 8252 _diffrn_reflns.pdbx_Rmerge_I_obs 0.033 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.95 _diffrn_reflns.pdbx_redundancy 5.43 _diffrn_reflns.pdbx_rejects 339 _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 45147 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.30 24.28 ? 16 0.015 ? 0.670 5.58 ? 1 3.42 4.30 ? 29 0.027 ? 0.760 5.39 ? 1 2.99 3.42 ? 49 0.041 ? 0.740 5.46 ? 1 2.71 2.99 ? 47 0.060 ? 0.760 5.46 ? 1 2.52 2.71 ? 57 0.080 ? 0.840 5.43 ? 1 2.37 2.52 ? 32 0.120 ? 0.950 5.45 ? 1 2.25 2.37 ? 25 0.181 ? 1.080 5.39 ? 1 2.15 2.25 ? 23 0.277 ? 1.210 5.42 ? 1 2.07 2.15 ? 26 0.308 ? 1.230 5.40 ? 1 2.00 2.07 ? 35 0.379 ? 1.320 5.30 ? # _pdbx_phasing_dm.entry_id 4U6L _pdbx_phasing_dm.fom_acentric 0.460 _pdbx_phasing_dm.fom_centric 0.510 _pdbx_phasing_dm.fom 0.460 _pdbx_phasing_dm.reflns_acentric 4680 _pdbx_phasing_dm.reflns_centric 295 _pdbx_phasing_dm.reflns 4975 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 1.900 2.000 ? ? 0.070 0.090 0.070 899 43 942 2.000 2.400 ? ? 0.200 0.140 0.200 1402 64 1466 2.400 2.700 ? ? 0.510 0.400 0.500 806 48 854 2.700 3.400 ? ? 0.810 0.700 0.800 780 50 830 3.400 5.400 ? ? 0.940 0.890 0.930 613 58 671 # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? CNS ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 5 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 215 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 226 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.72 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A A 2 ? ? OP1 A A 2 ? ? 1.605 1.485 0.120 0.017 N 2 1 P A A 2 ? ? OP2 A A 2 ? ? 1.608 1.485 0.123 0.017 N 3 1 P A A 3 ? ? OP1 A A 3 ? ? 1.592 1.485 0.107 0.017 N 4 1 P A A 3 ? ? OP2 A A 3 ? ? 1.611 1.485 0.126 0.017 N 5 1 P A G 4 ? ? OP1 A G 4 ? ? 1.612 1.485 0.127 0.017 N 6 1 P A G 4 ? ? OP2 A G 4 ? ? 1.608 1.485 0.123 0.017 N 7 1 P A A 5 ? ? OP1 A A 5 ? ? 1.605 1.485 0.120 0.017 N 8 1 P A A 5 ? ? OP2 A A 5 ? ? 1.612 1.485 0.127 0.017 N 9 1 P A A 5 ? ? "O5'" A A 5 ? ? 1.656 1.593 0.063 0.010 N 10 1 P A A 6 ? ? OP1 A A 6 ? ? 1.609 1.485 0.124 0.017 N 11 1 P A A 6 ? ? OP2 A A 6 ? ? 1.616 1.485 0.131 0.017 N 12 1 P A G 7 ? ? OP1 A G 7 ? ? 1.602 1.485 0.117 0.017 N 13 1 P A G 7 ? ? OP2 A G 7 ? ? 1.615 1.485 0.130 0.017 N 14 1 P A A 8 ? ? OP1 A A 8 ? ? 1.610 1.485 0.125 0.017 N 15 1 P A A 8 ? ? OP2 A A 8 ? ? 1.608 1.485 0.123 0.017 N 16 1 P A G 9 ? ? OP1 A G 9 ? ? 1.595 1.485 0.110 0.017 N 17 1 P A G 9 ? ? OP2 A G 9 ? ? 1.588 1.485 0.103 0.017 N 18 1 P A G 9 ? ? "O5'" A G 9 ? ? 1.654 1.593 0.061 0.010 N 19 1 P B DT 2 ? ? OP1 B DT 2 ? ? 1.601 1.485 0.116 0.017 N 20 1 P B DT 2 ? ? OP2 B DT 2 ? ? 1.610 1.485 0.125 0.017 N 21 1 P B DC 3 ? ? OP1 B DC 3 ? ? 1.597 1.485 0.112 0.017 N 22 1 P B DC 3 ? ? OP2 B DC 3 ? ? 1.606 1.485 0.121 0.017 N 23 1 P B DT 4 ? ? OP1 B DT 4 ? ? 1.603 1.485 0.118 0.017 N 24 1 P B DT 4 ? ? OP2 B DT 4 ? ? 1.607 1.485 0.122 0.017 N 25 1 P B DT 5 ? ? OP1 B DT 5 ? ? 1.600 1.485 0.115 0.017 N 26 1 P B DT 5 ? ? OP2 B DT 5 ? ? 1.602 1.485 0.117 0.017 N 27 1 P B DC 6 ? ? OP1 B DC 6 ? ? 1.588 1.485 0.103 0.017 N 28 1 P B DC 6 ? ? OP2 B DC 6 ? ? 1.606 1.485 0.121 0.017 N 29 1 P B DT 7 ? ? OP1 B DT 7 ? ? 1.596 1.485 0.111 0.017 N 30 1 P B DT 7 ? ? OP2 B DT 7 ? ? 1.595 1.485 0.110 0.017 N 31 1 P B DT 8 ? ? OP1 B DT 8 ? ? 1.598 1.485 0.113 0.017 N 32 1 P B DT 8 ? ? OP2 B DT 8 ? ? 1.610 1.485 0.125 0.017 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.24 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -5.46 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 227 ? 6.02 . 2 1 O ? B HOH 228 ? 8.69 . 3 1 O ? B HOH 229 ? 10.40 . 4 1 O ? B HOH 233 ? 7.41 . # _ndb_struct_conf_na.entry_id 4U6L _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B 5CM 9 1_555 -0.379 -0.217 -0.144 -8.047 -13.316 2.788 1 A_G1:5CM9_B A 1 ? B 9 ? 19 1 1 A A 2 1_555 B DT 8 1_555 0.101 -0.174 -0.132 -5.711 -15.865 3.288 2 A_A2:DT8_B A 2 ? B 8 ? 20 1 1 A A 3 1_555 B DT 7 1_555 0.026 -0.196 0.042 -6.362 -18.477 5.427 3 A_A3:DT7_B A 3 ? B 7 ? 20 1 1 A G 4 1_555 B DC 6 1_555 -0.251 -0.187 -0.253 -14.277 -13.470 -1.011 4 A_G4:DC6_B A 4 ? B 6 ? 19 1 1 A A 5 1_555 B DT 5 1_555 -0.112 -0.227 -0.399 -15.870 -9.070 -1.641 5 A_A5:DT5_B A 5 ? B 5 ? 20 1 1 A A 6 1_555 B DT 4 1_555 -0.194 -0.138 -0.006 1.718 -7.331 3.643 6 A_A6:DT4_B A 6 ? B 4 ? 20 1 1 A G 7 1_555 B DC 3 1_555 -0.358 -0.041 -0.259 -1.454 -12.998 1.304 7 A_G7:DC3_B A 7 ? B 3 ? 19 1 1 A A 8 1_555 B DT 2 1_555 -0.056 -0.120 -0.136 -2.960 -8.246 1.110 8 A_A8:DT2_B A 8 ? B 2 ? 20 1 1 A G 9 1_555 B 5CM 1 1_555 -0.181 -0.140 -0.135 5.390 -1.355 3.478 9 A_G9:5CM1_B A 9 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B 5CM 9 1_555 A A 2 1_555 B DT 8 1_555 0.319 -0.979 3.243 0.586 2.787 35.766 -1.981 -0.436 3.165 4.528 -0.952 35.876 1 AA_G1A2:DT85CM9_BB A 1 ? B 9 ? A 2 ? B 8 ? 1 A A 2 1_555 B DT 8 1_555 A A 3 1_555 B DT 7 1_555 0.364 -1.090 3.303 -0.668 3.871 32.174 -2.628 -0.769 3.145 6.951 1.199 32.407 2 AA_A2A3:DT7DT8_BB A 2 ? B 8 ? A 3 ? B 7 ? 1 A A 3 1_555 B DT 7 1_555 A G 4 1_555 B DC 6 1_555 -1.257 -1.214 3.473 -2.053 12.480 34.326 -3.684 1.719 2.937 20.311 3.342 36.516 3 AA_A3G4:DC6DT7_BB A 3 ? B 7 ? A 4 ? B 6 ? 1 A G 4 1_555 B DC 6 1_555 A A 5 1_555 B DT 5 1_555 1.059 -1.809 3.453 4.497 13.933 28.763 -5.648 -1.139 2.471 26.027 -8.400 32.205 4 AA_G4A5:DT5DC6_BB A 4 ? B 6 ? A 5 ? B 5 ? 1 A A 5 1_555 B DT 5 1_555 A A 6 1_555 B DT 4 1_555 0.656 -1.331 2.920 -0.977 2.660 26.448 -3.500 -1.649 2.750 5.792 2.127 26.597 5 AA_A5A6:DT4DT5_BB A 5 ? B 5 ? A 6 ? B 4 ? 1 A A 6 1_555 B DT 4 1_555 A G 7 1_555 B DC 3 1_555 0.319 -1.648 3.550 0.956 7.265 29.565 -4.631 -0.412 3.076 13.967 -1.839 30.440 6 AA_A6G7:DC3DT4_BB A 6 ? B 4 ? A 7 ? B 3 ? 1 A G 7 1_555 B DC 3 1_555 A A 8 1_555 B DT 2 1_555 -0.742 -1.542 3.238 -2.849 7.278 33.855 -3.645 0.829 2.905 12.296 4.813 34.720 7 AA_G7A8:DT2DC3_BB A 7 ? B 3 ? A 8 ? B 2 ? 1 A A 8 1_555 B DT 2 1_555 A G 9 1_555 B 5CM 1 1_555 0.325 -1.778 3.051 1.304 4.125 29.958 -4.156 -0.385 2.798 7.928 -2.507 30.261 8 AA_A8G9:5CM1DT2_BB A 8 ? B 2 ? A 9 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT HEXAMMINE(III)' NCO 4 'STRONTIUM ION' SR 5 water HOH #