data_4U8C # _entry.id 4U8C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4U8C pdb_00004u8c 10.2210/pdb4u8c/pdb WWPDB D_1000202985 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4U8A PDB . unspecified 4U8B PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4U8C _pdbx_database_status.recvd_initial_deposition_date 2014-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhu, W.' 1 'Oldfield, E.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 58 _citation.language ? _citation.page_first 1215 _citation.page_last 1227 _citation.title 'Antibacterial drug leads: DNA and enzyme multitargeting.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jm501449u _citation.pdbx_database_id_PubMed 25574764 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, W.' 1 ? primary 'Wang, Y.' 2 ? primary 'Li, K.' 3 ? primary 'Gao, J.' 4 ? primary 'Huang, C.H.' 5 ? primary 'Chen, C.C.' 6 ? primary 'Ko, T.P.' 7 ? primary 'Zhang, Y.' 8 ? primary 'Guo, R.T.' 9 ? primary 'Oldfield, E.' 10 ? # _cell.length_a 24.793 _cell.length_b 39.948 _cell.length_c 65.786 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4U8C _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "2,2'-benzene-1,4-diylbis[6-(1,4,5,6-tetrahydropyrimidin-2-yl)-1H-indole]" 472.584 1 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4U8C _struct_ref.pdbx_db_accession 4U8C _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4U8C A 1 ? 12 ? 4U8C 1 ? 12 ? 1 12 2 1 4U8C B 1 ? 12 ? 4U8C 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3F6 non-polymer . "2,2'-benzene-1,4-diylbis[6-(1,4,5,6-tetrahydropyrimidin-2-yl)-1H-indole]" ? 'C30 H28 N6' 472.584 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4U8C _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40 mM sodium cacodylate, pH 6.9, 50 mM Mg(OAc)2, 6 mM spermine-4HCl, 40% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4U8C _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.240 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18244 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.800 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 35.586 _reflns.pdbx_netI_over_sigmaI 11.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.023 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 251444 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.240 1.260 ? ? ? ? ? 760 ? 83.200 ? ? ? ? 0.551 ? ? ? ? ? ? ? ? 12.100 ? 0.708 ? ? ? ? 0 1 1 ? ? 1.260 1.280 ? ? ? ? ? 803 ? 85.500 ? ? ? ? 0.492 ? ? ? ? ? ? ? ? 12.500 ? 0.702 ? ? ? ? 0 2 1 ? ? 1.280 1.310 ? ? ? ? ? 838 ? 88.000 ? ? ? ? 0.432 ? ? ? ? ? ? ? ? 12.700 ? 0.705 ? ? ? ? 0 3 1 ? ? 1.310 1.340 ? ? ? ? ? 872 ? 93.900 ? ? ? ? 0.413 ? ? ? ? ? ? ? ? 13.200 ? 0.715 ? ? ? ? 0 4 1 ? ? 1.340 1.360 ? ? ? ? ? 925 ? 97.500 ? ? ? ? 0.326 ? ? ? ? ? ? ? ? 13.200 ? 0.737 ? ? ? ? 0 5 1 ? ? 1.360 1.400 ? ? ? ? ? 926 ? 99.100 ? ? ? ? 0.317 ? ? ? ? ? ? ? ? 13.800 ? 0.731 ? ? ? ? 0 6 1 ? ? 1.400 1.430 ? ? ? ? ? 959 ? 100.000 ? ? ? ? 0.244 ? ? ? ? ? ? ? ? 14.500 ? 0.762 ? ? ? ? 0 7 1 ? ? 1.430 1.470 ? ? ? ? ? 955 ? 100.000 ? ? ? ? 0.207 ? ? ? ? ? ? ? ? 14.400 ? 0.748 ? ? ? ? 0 8 1 ? ? 1.470 1.510 ? ? ? ? ? 925 ? 100.000 ? ? ? ? 0.162 ? ? ? ? ? ? ? ? 14.600 ? 0.812 ? ? ? ? 0 9 1 ? ? 1.510 1.560 ? ? ? ? ? 960 ? 100.000 ? ? ? ? 0.135 ? ? ? ? ? ? ? ? 14.500 ? 0.906 ? ? ? ? 0 10 1 ? ? 1.560 1.620 ? ? ? ? ? 946 ? 100.000 ? ? ? ? 0.108 ? ? ? ? ? ? ? ? 14.500 ? 1.093 ? ? ? ? 0 11 1 ? ? 1.620 1.680 ? ? ? ? ? 954 ? 100.000 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 14.500 ? 1.167 ? ? ? ? 0 12 1 ? ? 1.680 1.760 ? ? ? ? ? 975 ? 100.000 ? ? ? ? 0.080 ? ? ? ? ? ? ? ? 14.500 ? 1.128 ? ? ? ? 0 13 1 ? ? 1.760 1.850 ? ? ? ? ? 930 ? 100.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 14.500 ? 1.101 ? ? ? ? 0 14 1 ? ? 1.850 1.970 ? ? ? ? ? 979 ? 99.900 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 14.400 ? 1.089 ? ? ? ? 0 15 1 ? ? 1.970 2.120 ? ? ? ? ? 967 ? 99.800 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 14.400 ? 1.290 ? ? ? ? 0 16 1 ? ? 2.120 2.330 ? ? ? ? ? 967 ? 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 14.200 ? 1.595 ? ? ? ? 0 17 1 ? ? 2.330 2.670 ? ? ? ? ? 990 ? 100.000 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 14.100 ? 1.401 ? ? ? ? 0 18 1 ? ? 2.670 3.370 ? ? ? ? ? 927 ? 92.400 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 13.300 ? 1.471 ? ? ? ? 0 19 1 ? ? 3.370 50.000 ? ? ? ? ? 686 ? 63.400 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 10.100 ? 1.494 ? ? ? ? 0 20 1 ? ? # _refine.aniso_B[1][1] 0.0300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -0.0600 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.0300 _refine.B_iso_max 43.770 _refine.B_iso_mean 23.7280 _refine.B_iso_min 14.310 _refine.correlation_coeff_Fo_to_Fc 0.9280 _refine.correlation_coeff_Fo_to_Fc_free 0.8940 _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4U8C _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2400 _refine.ls_d_res_low 17.0700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18194 _refine.ls_number_reflns_R_free 940 _refine.ls_number_reflns_R_work 17254 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.8600 _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2789 _refine.ls_R_factor_R_free 0.3329 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2761 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 436D _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0690 _refine.pdbx_overall_ESU_R_Free 0.0780 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.5730 _refine.overall_SU_ML 0.0640 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.2400 _refine_hist.d_res_low 17.0700 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 570 _refine_hist.pdbx_number_residues_total 24 _refine_hist.pdbx_B_iso_mean_ligand 30.78 _refine_hist.pdbx_B_iso_mean_solvent 28.12 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.011 586 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 2.328 1.464 896 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.100 0.200 72 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.029 0.020 292 ? r_gen_planes_refined ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.2400 _refine_ls_shell.d_res_low 1.2720 _refine_ls_shell.number_reflns_all 1024 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_R_work 976 _refine_ls_shell.percent_reflns_obs 81.3300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4790 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.4250 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? # _struct.entry_id 4U8C _struct.title 'Crystal structure of D(CGCGAATTCGCG)2 complexed with BPH-1409' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4U8C _struct_keywords.text ;Antibacterial Agents, Bisamidines, Minor Groove Binders, Models, Molecular, Nucleic Acid Conformation, Oligodeoxyribonucleotides, DNA-ANTIBIOTIC complex ; _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 206 3_655 ? ? ? ? ? ? ? 2.060 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 207 3_655 ? ? ? ? ? ? ? 2.055 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 210 3_655 ? ? ? ? ? ? ? 2.180 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 211 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 B HOH 102 1_555 ? ? ? ? ? ? ? 2.032 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A 3F6 102 ? 12 'binding site for residue 3F6 A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 203 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 206 . ? 3_655 ? 3 AC1 6 HOH E . ? HOH A 207 . ? 3_655 ? 4 AC1 6 HOH E . ? HOH A 210 . ? 3_655 ? 5 AC1 6 HOH E . ? HOH A 211 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH B 102 . ? 1_555 ? 7 AC2 12 DA A 6 ? DA A 6 . ? 1_555 ? 8 AC2 12 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 12 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC2 12 DC A 9 ? DC A 9 . ? 1_555 ? 11 AC2 12 DG A 10 ? DG A 10 . ? 1_555 ? 12 AC2 12 DC A 11 ? DC A 11 . ? 1_555 ? 13 AC2 12 DG B 4 ? DG B 16 . ? 1_555 ? 14 AC2 12 DA B 6 ? DA B 18 . ? 1_555 ? 15 AC2 12 DT B 7 ? DT B 19 . ? 1_555 ? 16 AC2 12 DT B 8 ? DT B 20 . ? 1_555 ? 17 AC2 12 DC B 9 ? DC B 21 . ? 1_555 ? 18 AC2 12 DG B 12 ? DG B 24 . ? 2_555 ? # _atom_sites.entry_id 4U8C _atom_sites.fract_transf_matrix[1][1] 0.040334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025033 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015201 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG A . D 3 3F6 1 102 1 3F6 DRG A . E 4 HOH 1 201 45 HOH HOH A . E 4 HOH 2 202 19 HOH HOH A . E 4 HOH 3 203 53 HOH HOH A . E 4 HOH 4 204 8 HOH HOH A . E 4 HOH 5 205 3 HOH HOH A . E 4 HOH 6 206 56 HOH HOH A . E 4 HOH 7 207 51 HOH HOH A . E 4 HOH 8 208 47 HOH HOH A . E 4 HOH 9 209 28 HOH HOH A . E 4 HOH 10 210 54 HOH HOH A . E 4 HOH 11 211 55 HOH HOH A . E 4 HOH 12 212 20 HOH HOH A . E 4 HOH 13 213 1 HOH HOH A . E 4 HOH 14 214 43 HOH HOH A . E 4 HOH 15 215 15 HOH HOH A . E 4 HOH 16 216 60 HOH HOH A . E 4 HOH 17 217 17 HOH HOH A . E 4 HOH 18 218 22 HOH HOH A . E 4 HOH 19 219 50 HOH HOH A . E 4 HOH 20 220 12 HOH HOH A . E 4 HOH 21 221 5 HOH HOH A . E 4 HOH 22 222 7 HOH HOH A . E 4 HOH 23 223 16 HOH HOH A . E 4 HOH 24 224 29 HOH HOH A . E 4 HOH 25 225 41 HOH HOH A . E 4 HOH 26 226 44 HOH HOH A . E 4 HOH 27 227 46 HOH HOH A . E 4 HOH 28 228 48 HOH HOH A . E 4 HOH 29 229 49 HOH HOH A . E 4 HOH 30 230 58 HOH HOH A . F 4 HOH 1 101 31 HOH HOH B . F 4 HOH 2 102 52 HOH HOH B . F 4 HOH 3 103 2 HOH HOH B . F 4 HOH 4 104 14 HOH HOH B . F 4 HOH 5 105 34 HOH HOH B . F 4 HOH 6 106 30 HOH HOH B . F 4 HOH 7 107 6 HOH HOH B . F 4 HOH 8 108 33 HOH HOH B . F 4 HOH 9 109 40 HOH HOH B . F 4 HOH 10 110 11 HOH HOH B . F 4 HOH 11 111 18 HOH HOH B . F 4 HOH 12 112 35 HOH HOH B . F 4 HOH 13 113 36 HOH HOH B . F 4 HOH 14 114 37 HOH HOH B . F 4 HOH 15 115 38 HOH HOH B . F 4 HOH 16 116 39 HOH HOH B . F 4 HOH 17 117 59 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1530 ? 1 MORE -5 ? 1 'SSA (A^2)' 4390 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 206 ? 3_655 93.5 ? 2 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 207 ? 3_655 173.3 ? 3 O ? E HOH . ? A HOH 206 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 207 ? 3_655 93.1 ? 4 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 210 ? 3_655 88.1 ? 5 O ? E HOH . ? A HOH 206 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 210 ? 3_655 87.7 ? 6 O ? E HOH . ? A HOH 207 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 210 ? 3_655 91.6 ? 7 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 90.6 ? 8 O ? E HOH . ? A HOH 206 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 87.6 ? 9 O ? E HOH . ? A HOH 207 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 90.3 ? 10 O ? E HOH . ? A HOH 210 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 175.0 ? 11 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 86.5 ? 12 O ? E HOH . ? A HOH 206 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 176.2 ? 13 O ? E HOH . ? A HOH 207 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 86.8 ? 14 O ? E HOH . ? A HOH 210 ? 3_655 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 88.5 ? 15 O ? E HOH . ? A HOH 211 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 96.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-04 2 'Structure model' 1 1 2015-02-25 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2019-12-25 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Author supporting evidence' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_entity_src_syn 5 3 'Structure model' pdbx_struct_assembly 6 3 'Structure model' pdbx_struct_assembly_gen 7 3 'Structure model' pdbx_struct_assembly_prop 8 3 'Structure model' pdbx_struct_oper_list 9 3 'Structure model' struct_keywords 10 4 'Structure model' pdbx_audit_support 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model 15 5 'Structure model' pdbx_struct_conn_angle 16 5 'Structure model' refine_hist 17 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 3 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 3 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 6 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 7 3 'Structure model' '_pdbx_struct_assembly_prop.type' 8 3 'Structure model' '_pdbx_struct_assembly_prop.value' 9 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 3 'Structure model' '_struct_keywords.text' 11 4 'Structure model' '_pdbx_audit_support.funding_organization' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 24 5 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 25 5 'Structure model' '_struct_conn.pdbx_dist_value' 26 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.6.0117 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.14 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DG 22 ? ? P B DC 23 ? ? 1.519 1.607 -0.088 0.012 Y 2 1 P B DG 24 ? ? OP1 B DG 24 ? ? 1.383 1.485 -0.102 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 127.69 119.70 7.99 1.20 Y 2 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 127.44 119.70 7.74 1.20 Y 3 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 119.24 110.70 8.54 1.20 N 4 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 130.30 119.70 10.60 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3F6 NAU N N N 1 3F6 CAQ C N N 2 3F6 CAM C N N 3 3F6 CAO C N N 4 3F6 NAS N N N 5 3F6 CAY C N N 6 3F6 CBA C Y N 7 3F6 CAI C Y N 8 3F6 CAE C Y N 9 3F6 CAG C Y N 10 3F6 CBG C Y N 11 3F6 CAK C Y N 12 3F6 CBI C Y N 13 3F6 NAW N Y N 14 3F6 CBE C Y N 15 3F6 CBC C Y N 16 3F6 CAB C Y N 17 3F6 CAD C Y N 18 3F6 CAA C Y N 19 3F6 CAC C Y N 20 3F6 CBD C Y N 21 3F6 CBF C Y N 22 3F6 CAL C Y N 23 3F6 NAX N Y N 24 3F6 CBJ C Y N 25 3F6 CAJ C Y N 26 3F6 CBH C Y N 27 3F6 CAH C Y N 28 3F6 CAF C Y N 29 3F6 CBB C Y N 30 3F6 CAZ C N N 31 3F6 NAT N N N 32 3F6 CAP C N N 33 3F6 CAN C N N 34 3F6 CAR C N N 35 3F6 NAV N N N 36 3F6 H1 H N N 37 3F6 H2 H N N 38 3F6 H3 H N N 39 3F6 H4 H N N 40 3F6 H5 H N N 41 3F6 H6 H N N 42 3F6 H7 H N N 43 3F6 H8 H N N 44 3F6 H9 H N N 45 3F6 H10 H N N 46 3F6 H11 H N N 47 3F6 H12 H N N 48 3F6 H13 H N N 49 3F6 H14 H N N 50 3F6 H15 H N N 51 3F6 H16 H N N 52 3F6 H17 H N N 53 3F6 H18 H N N 54 3F6 H19 H N N 55 3F6 H20 H N N 56 3F6 H21 H N N 57 3F6 H22 H N N 58 3F6 H23 H N N 59 3F6 H24 H N N 60 3F6 H25 H N N 61 3F6 H26 H N N 62 3F6 H27 H N N 63 3F6 H28 H N N 64 DA OP3 O N N 65 DA P P N N 66 DA OP1 O N N 67 DA OP2 O N N 68 DA "O5'" O N N 69 DA "C5'" C N N 70 DA "C4'" C N R 71 DA "O4'" O N N 72 DA "C3'" C N S 73 DA "O3'" O N N 74 DA "C2'" C N N 75 DA "C1'" C N R 76 DA N9 N Y N 77 DA C8 C Y N 78 DA N7 N Y N 79 DA C5 C Y N 80 DA C6 C Y N 81 DA N6 N N N 82 DA N1 N Y N 83 DA C2 C Y N 84 DA N3 N Y N 85 DA C4 C Y N 86 DA HOP3 H N N 87 DA HOP2 H N N 88 DA "H5'" H N N 89 DA "H5''" H N N 90 DA "H4'" H N N 91 DA "H3'" H N N 92 DA "HO3'" H N N 93 DA "H2'" H N N 94 DA "H2''" H N N 95 DA "H1'" H N N 96 DA H8 H N N 97 DA H61 H N N 98 DA H62 H N N 99 DA H2 H N N 100 DC OP3 O N N 101 DC P P N N 102 DC OP1 O N N 103 DC OP2 O N N 104 DC "O5'" O N N 105 DC "C5'" C N N 106 DC "C4'" C N R 107 DC "O4'" O N N 108 DC "C3'" C N S 109 DC "O3'" O N N 110 DC "C2'" C N N 111 DC "C1'" C N R 112 DC N1 N N N 113 DC C2 C N N 114 DC O2 O N N 115 DC N3 N N N 116 DC C4 C N N 117 DC N4 N N N 118 DC C5 C N N 119 DC C6 C N N 120 DC HOP3 H N N 121 DC HOP2 H N N 122 DC "H5'" H N N 123 DC "H5''" H N N 124 DC "H4'" H N N 125 DC "H3'" H N N 126 DC "HO3'" H N N 127 DC "H2'" H N N 128 DC "H2''" H N N 129 DC "H1'" H N N 130 DC H41 H N N 131 DC H42 H N N 132 DC H5 H N N 133 DC H6 H N N 134 DG OP3 O N N 135 DG P P N N 136 DG OP1 O N N 137 DG OP2 O N N 138 DG "O5'" O N N 139 DG "C5'" C N N 140 DG "C4'" C N R 141 DG "O4'" O N N 142 DG "C3'" C N S 143 DG "O3'" O N N 144 DG "C2'" C N N 145 DG "C1'" C N R 146 DG N9 N Y N 147 DG C8 C Y N 148 DG N7 N Y N 149 DG C5 C Y N 150 DG C6 C N N 151 DG O6 O N N 152 DG N1 N N N 153 DG C2 C N N 154 DG N2 N N N 155 DG N3 N N N 156 DG C4 C Y N 157 DG HOP3 H N N 158 DG HOP2 H N N 159 DG "H5'" H N N 160 DG "H5''" H N N 161 DG "H4'" H N N 162 DG "H3'" H N N 163 DG "HO3'" H N N 164 DG "H2'" H N N 165 DG "H2''" H N N 166 DG "H1'" H N N 167 DG H8 H N N 168 DG H1 H N N 169 DG H21 H N N 170 DG H22 H N N 171 DT OP3 O N N 172 DT P P N N 173 DT OP1 O N N 174 DT OP2 O N N 175 DT "O5'" O N N 176 DT "C5'" C N N 177 DT "C4'" C N R 178 DT "O4'" O N N 179 DT "C3'" C N S 180 DT "O3'" O N N 181 DT "C2'" C N N 182 DT "C1'" C N R 183 DT N1 N N N 184 DT C2 C N N 185 DT O2 O N N 186 DT N3 N N N 187 DT C4 C N N 188 DT O4 O N N 189 DT C5 C N N 190 DT C7 C N N 191 DT C6 C N N 192 DT HOP3 H N N 193 DT HOP2 H N N 194 DT "H5'" H N N 195 DT "H5''" H N N 196 DT "H4'" H N N 197 DT "H3'" H N N 198 DT "HO3'" H N N 199 DT "H2'" H N N 200 DT "H2''" H N N 201 DT "H1'" H N N 202 DT H3 H N N 203 DT H71 H N N 204 DT H72 H N N 205 DT H73 H N N 206 DT H6 H N N 207 HOH O O N N 208 HOH H1 H N N 209 HOH H2 H N N 210 MG MG MG N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3F6 CAM CAO sing N N 1 3F6 CAM CAQ sing N N 2 3F6 CAO NAS sing N N 3 3F6 CAQ NAU sing N N 4 3F6 NAS CAY doub N N 5 3F6 NAU CAY sing N N 6 3F6 CAY CBA sing N N 7 3F6 CBA CAE doub Y N 8 3F6 CBA CAI sing Y N 9 3F6 CAE CAG sing Y N 10 3F6 CAI CBI doub Y N 11 3F6 CAG CBG doub Y N 12 3F6 CBI CBG sing Y N 13 3F6 CBI NAW sing Y N 14 3F6 CBG CAK sing Y N 15 3F6 NAW CBE sing Y N 16 3F6 CAK CBE doub Y N 17 3F6 CBE CBC sing N N 18 3F6 CBC CAB doub Y N 19 3F6 CBC CAA sing Y N 20 3F6 CAB CAD sing Y N 21 3F6 CAA CAC doub Y N 22 3F6 CAD CBD doub Y N 23 3F6 CAC CBD sing Y N 24 3F6 CBD CBF sing N N 25 3F6 CBF CAL doub Y N 26 3F6 CBF NAX sing Y N 27 3F6 CAL CBH sing Y N 28 3F6 NAX CBJ sing Y N 29 3F6 CBH CBJ doub Y N 30 3F6 CBH CAH sing Y N 31 3F6 CBJ CAJ sing Y N 32 3F6 CAH CAF doub Y N 33 3F6 CAJ CBB doub Y N 34 3F6 CAF CBB sing Y N 35 3F6 CBB CAZ sing N N 36 3F6 CAZ NAV sing N N 37 3F6 CAZ NAT doub N N 38 3F6 NAV CAR sing N N 39 3F6 NAT CAP sing N N 40 3F6 CAR CAN sing N N 41 3F6 CAP CAN sing N N 42 3F6 NAU H1 sing N N 43 3F6 CAQ H2 sing N N 44 3F6 CAQ H3 sing N N 45 3F6 CAM H4 sing N N 46 3F6 CAM H5 sing N N 47 3F6 CAO H6 sing N N 48 3F6 CAO H7 sing N N 49 3F6 CAI H8 sing N N 50 3F6 CAE H9 sing N N 51 3F6 CAG H10 sing N N 52 3F6 CAK H11 sing N N 53 3F6 NAW H12 sing N N 54 3F6 CAB H13 sing N N 55 3F6 CAD H14 sing N N 56 3F6 CAA H15 sing N N 57 3F6 CAC H16 sing N N 58 3F6 CAL H17 sing N N 59 3F6 NAX H18 sing N N 60 3F6 CAJ H19 sing N N 61 3F6 CAH H20 sing N N 62 3F6 CAF H21 sing N N 63 3F6 CAP H22 sing N N 64 3F6 CAP H23 sing N N 65 3F6 CAN H24 sing N N 66 3F6 CAN H25 sing N N 67 3F6 CAR H26 sing N N 68 3F6 CAR H27 sing N N 69 3F6 NAV H28 sing N N 70 DA OP3 P sing N N 71 DA OP3 HOP3 sing N N 72 DA P OP1 doub N N 73 DA P OP2 sing N N 74 DA P "O5'" sing N N 75 DA OP2 HOP2 sing N N 76 DA "O5'" "C5'" sing N N 77 DA "C5'" "C4'" sing N N 78 DA "C5'" "H5'" sing N N 79 DA "C5'" "H5''" sing N N 80 DA "C4'" "O4'" sing N N 81 DA "C4'" "C3'" sing N N 82 DA "C4'" "H4'" sing N N 83 DA "O4'" "C1'" sing N N 84 DA "C3'" "O3'" sing N N 85 DA "C3'" "C2'" sing N N 86 DA "C3'" "H3'" sing N N 87 DA "O3'" "HO3'" sing N N 88 DA "C2'" "C1'" sing N N 89 DA "C2'" "H2'" sing N N 90 DA "C2'" "H2''" sing N N 91 DA "C1'" N9 sing N N 92 DA "C1'" "H1'" sing N N 93 DA N9 C8 sing Y N 94 DA N9 C4 sing Y N 95 DA C8 N7 doub Y N 96 DA C8 H8 sing N N 97 DA N7 C5 sing Y N 98 DA C5 C6 sing Y N 99 DA C5 C4 doub Y N 100 DA C6 N6 sing N N 101 DA C6 N1 doub Y N 102 DA N6 H61 sing N N 103 DA N6 H62 sing N N 104 DA N1 C2 sing Y N 105 DA C2 N3 doub Y N 106 DA C2 H2 sing N N 107 DA N3 C4 sing Y N 108 DC OP3 P sing N N 109 DC OP3 HOP3 sing N N 110 DC P OP1 doub N N 111 DC P OP2 sing N N 112 DC P "O5'" sing N N 113 DC OP2 HOP2 sing N N 114 DC "O5'" "C5'" sing N N 115 DC "C5'" "C4'" sing N N 116 DC "C5'" "H5'" sing N N 117 DC "C5'" "H5''" sing N N 118 DC "C4'" "O4'" sing N N 119 DC "C4'" "C3'" sing N N 120 DC "C4'" "H4'" sing N N 121 DC "O4'" "C1'" sing N N 122 DC "C3'" "O3'" sing N N 123 DC "C3'" "C2'" sing N N 124 DC "C3'" "H3'" sing N N 125 DC "O3'" "HO3'" sing N N 126 DC "C2'" "C1'" sing N N 127 DC "C2'" "H2'" sing N N 128 DC "C2'" "H2''" sing N N 129 DC "C1'" N1 sing N N 130 DC "C1'" "H1'" sing N N 131 DC N1 C2 sing N N 132 DC N1 C6 sing N N 133 DC C2 O2 doub N N 134 DC C2 N3 sing N N 135 DC N3 C4 doub N N 136 DC C4 N4 sing N N 137 DC C4 C5 sing N N 138 DC N4 H41 sing N N 139 DC N4 H42 sing N N 140 DC C5 C6 doub N N 141 DC C5 H5 sing N N 142 DC C6 H6 sing N N 143 DG OP3 P sing N N 144 DG OP3 HOP3 sing N N 145 DG P OP1 doub N N 146 DG P OP2 sing N N 147 DG P "O5'" sing N N 148 DG OP2 HOP2 sing N N 149 DG "O5'" "C5'" sing N N 150 DG "C5'" "C4'" sing N N 151 DG "C5'" "H5'" sing N N 152 DG "C5'" "H5''" sing N N 153 DG "C4'" "O4'" sing N N 154 DG "C4'" "C3'" sing N N 155 DG "C4'" "H4'" sing N N 156 DG "O4'" "C1'" sing N N 157 DG "C3'" "O3'" sing N N 158 DG "C3'" "C2'" sing N N 159 DG "C3'" "H3'" sing N N 160 DG "O3'" "HO3'" sing N N 161 DG "C2'" "C1'" sing N N 162 DG "C2'" "H2'" sing N N 163 DG "C2'" "H2''" sing N N 164 DG "C1'" N9 sing N N 165 DG "C1'" "H1'" sing N N 166 DG N9 C8 sing Y N 167 DG N9 C4 sing Y N 168 DG C8 N7 doub Y N 169 DG C8 H8 sing N N 170 DG N7 C5 sing Y N 171 DG C5 C6 sing N N 172 DG C5 C4 doub Y N 173 DG C6 O6 doub N N 174 DG C6 N1 sing N N 175 DG N1 C2 sing N N 176 DG N1 H1 sing N N 177 DG C2 N2 sing N N 178 DG C2 N3 doub N N 179 DG N2 H21 sing N N 180 DG N2 H22 sing N N 181 DG N3 C4 sing N N 182 DT OP3 P sing N N 183 DT OP3 HOP3 sing N N 184 DT P OP1 doub N N 185 DT P OP2 sing N N 186 DT P "O5'" sing N N 187 DT OP2 HOP2 sing N N 188 DT "O5'" "C5'" sing N N 189 DT "C5'" "C4'" sing N N 190 DT "C5'" "H5'" sing N N 191 DT "C5'" "H5''" sing N N 192 DT "C4'" "O4'" sing N N 193 DT "C4'" "C3'" sing N N 194 DT "C4'" "H4'" sing N N 195 DT "O4'" "C1'" sing N N 196 DT "C3'" "O3'" sing N N 197 DT "C3'" "C2'" sing N N 198 DT "C3'" "H3'" sing N N 199 DT "O3'" "HO3'" sing N N 200 DT "C2'" "C1'" sing N N 201 DT "C2'" "H2'" sing N N 202 DT "C2'" "H2''" sing N N 203 DT "C1'" N1 sing N N 204 DT "C1'" "H1'" sing N N 205 DT N1 C2 sing N N 206 DT N1 C6 sing N N 207 DT C2 O2 doub N N 208 DT C2 N3 sing N N 209 DT N3 C4 sing N N 210 DT N3 H3 sing N N 211 DT C4 O4 doub N N 212 DT C4 C5 sing N N 213 DT C5 C7 sing N N 214 DT C5 C6 doub N N 215 DT C7 H71 sing N N 216 DT C7 H72 sing N N 217 DT C7 H73 sing N N 218 DT C6 H6 sing N N 219 HOH O H1 sing N N 220 HOH O H2 sing N N 221 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4U8C 'double helix' 4U8C 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.195 -0.154 0.098 1.522 -16.353 1.184 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.198 -0.185 0.305 4.836 -9.080 -1.767 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.182 -0.137 0.124 -1.595 -8.223 -1.212 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.301 -0.049 -0.058 10.161 -8.809 -1.146 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.055 -0.110 -0.002 9.100 -16.103 1.255 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.134 -0.122 0.061 3.897 -16.989 5.860 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.006 -0.137 0.064 -1.806 -18.900 6.560 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.050 -0.292 -0.045 -4.930 -15.345 4.088 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.159 -0.194 -0.105 -8.610 -7.440 -1.289 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.128 -0.162 0.114 9.316 -4.258 1.673 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.170 -0.240 0.497 0.054 -21.646 -1.588 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.543 -0.117 -0.136 8.777 16.929 -1.559 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.389 0.096 3.181 -2.976 8.253 33.914 -1.062 0.206 3.140 13.862 4.999 34.998 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.624 0.575 3.494 2.729 -5.556 41.133 1.436 -0.572 3.424 -7.854 -3.858 41.576 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.391 0.751 3.136 2.812 9.213 25.990 -0.646 1.494 3.153 19.647 -5.997 27.689 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.100 0.201 3.295 -0.308 3.794 38.476 -0.167 -0.189 3.298 5.740 0.466 38.657 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.361 -0.370 3.310 -0.498 2.749 35.992 -0.989 -0.654 3.268 4.440 0.805 36.097 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.138 -0.684 3.339 0.515 0.637 31.465 -1.383 -0.157 3.326 1.173 -0.950 31.476 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.244 -0.310 3.293 2.376 0.900 35.541 -0.638 0.746 3.262 1.473 -3.886 35.629 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.101 0.154 3.420 2.255 -0.845 41.232 0.313 0.395 3.406 -1.199 -3.199 41.299 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.390 1.095 3.054 -2.960 8.040 25.599 0.338 -1.575 3.180 17.530 6.453 26.972 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.098 0.913 3.658 -6.519 -14.030 45.507 2.352 0.780 3.371 -17.549 8.155 47.932 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.379 0.605 3.444 6.286 -11.722 33.268 2.784 -1.282 3.253 -19.531 -10.473 35.758 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM065307 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2,2'-benzene-1,4-diylbis[6-(1,4,5,6-tetrahydropyrimidin-2-yl)-1H-indole]" 3F6 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 436D _pdbx_initial_refinement_model.details ? #