HEADER TRANSFERASE 05-AUG-14 4U9A TITLE SULPHUR ANOMALOUS CRYSTAL STRUCTURE OF ASYMMETRIC IRAK4 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS KINASE, SULPHUR ANOMALOUS, AUTOPHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FERRAO,Q.LIU,H.WU REVDAT 3 27-DEC-23 4U9A 1 SOURCE JRNL REMARK REVDAT 2 01-OCT-14 4U9A 1 JRNL REVDAT 1 24-SEP-14 4U9A 0 JRNL AUTH R.FERRAO,H.ZHOU,Y.SHAN,Q.LIU,Q.LI,D.E.SHAW,X.LI,H.WU JRNL TITL IRAK4 DIMERIZATION AND TRANS-AUTOPHOSPHORYLATION ARE INDUCED JRNL TITL 2 BY MYDDOSOME ASSEMBLY. JRNL REF MOL.CELL V. 55 891 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25201411 JRNL DOI 10.1016/J.MOLCEL.2014.08.006 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 43351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.240 REMARK 3 FREE R VALUE TEST SET COUNT : 3574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8830 - 8.2694 1.00 1584 142 0.1867 0.2275 REMARK 3 2 8.2694 - 6.5739 1.00 1577 139 0.1795 0.2301 REMARK 3 3 6.5739 - 5.7460 1.00 1587 139 0.1814 0.3132 REMARK 3 4 5.7460 - 5.2220 1.00 1579 138 0.1650 0.2367 REMARK 3 5 5.2220 - 4.8484 1.00 1564 146 0.1367 0.2063 REMARK 3 6 4.8484 - 4.5630 1.00 1584 142 0.1297 0.1881 REMARK 3 7 4.5630 - 4.3348 1.00 1560 144 0.1400 0.1688 REMARK 3 8 4.3348 - 4.1463 1.00 1593 145 0.1339 0.1997 REMARK 3 9 4.1463 - 3.9869 1.00 1537 140 0.1473 0.2175 REMARK 3 10 3.9869 - 3.8494 1.00 1622 149 0.1577 0.1891 REMARK 3 11 3.8494 - 3.7292 1.00 1582 146 0.1731 0.2140 REMARK 3 12 3.7292 - 3.6227 1.00 1538 138 0.1849 0.2122 REMARK 3 13 3.6227 - 3.5273 1.00 1579 142 0.1906 0.2551 REMARK 3 14 3.5273 - 3.4413 1.00 1594 144 0.2124 0.2420 REMARK 3 15 3.4413 - 3.3632 1.00 1536 133 0.2407 0.3312 REMARK 3 16 3.3632 - 3.2916 1.00 1614 139 0.2213 0.3242 REMARK 3 17 3.2916 - 3.2258 1.00 1551 143 0.2228 0.2645 REMARK 3 18 3.2258 - 3.1650 1.00 1589 146 0.2090 0.2549 REMARK 3 19 3.1650 - 3.1085 1.00 1571 140 0.2225 0.3111 REMARK 3 20 3.1085 - 3.0558 1.00 1584 144 0.2308 0.3391 REMARK 3 21 3.0558 - 3.0065 0.99 1531 136 0.2453 0.3384 REMARK 3 22 3.0065 - 2.9603 0.95 1526 137 0.2691 0.3440 REMARK 3 23 2.9603 - 2.9168 0.93 1438 134 0.2950 0.3617 REMARK 3 24 2.9168 - 2.8757 0.80 1311 116 0.3433 0.3882 REMARK 3 25 2.8757 - 2.8368 0.81 1269 108 0.3782 0.4830 REMARK 3 26 2.8368 - 2.8000 0.75 1177 104 0.4690 0.5884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4430 REMARK 3 ANGLE : 1.147 5994 REMARK 3 CHIRALITY : 0.040 671 REMARK 3 PLANARITY : 0.006 753 REMARK 3 DIHEDRAL : 14.954 1624 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6678 16.1169 26.1136 REMARK 3 T TENSOR REMARK 3 T11: 1.3052 T22: 1.5612 REMARK 3 T33: 1.4233 T12: 0.6414 REMARK 3 T13: 0.0411 T23: 0.5021 REMARK 3 L TENSOR REMARK 3 L11: 1.5086 L22: 2.2294 REMARK 3 L33: 1.6782 L12: -0.7400 REMARK 3 L13: -0.6244 L23: 0.3469 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: -0.4421 S13: -1.0169 REMARK 3 S21: -0.5571 S22: -0.5881 S23: -0.9558 REMARK 3 S31: 1.3676 S32: 1.5534 S33: 0.3409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 248 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4257 31.3350 23.5261 REMARK 3 T TENSOR REMARK 3 T11: 0.4763 T22: 1.4076 REMARK 3 T33: 0.7934 T12: 0.1087 REMARK 3 T13: -0.0369 T23: 0.1711 REMARK 3 L TENSOR REMARK 3 L11: 2.1049 L22: 4.0520 REMARK 3 L33: 1.6179 L12: 0.3161 REMARK 3 L13: -0.1390 L23: -0.5683 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -1.0599 S13: -0.3077 REMARK 3 S21: -0.3230 S22: -0.1955 S23: -0.5572 REMARK 3 S31: 0.1798 S32: 1.0873 S33: 0.1133 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 351 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4070 44.6357 14.2956 REMARK 3 T TENSOR REMARK 3 T11: 0.4857 T22: 0.9800 REMARK 3 T33: 0.6934 T12: -0.0168 REMARK 3 T13: 0.1419 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 4.4686 L22: 3.6541 REMARK 3 L33: 3.9656 L12: -0.4406 REMARK 3 L13: -0.1442 L23: -0.2778 REMARK 3 S TENSOR REMARK 3 S11: 0.5685 S12: -0.2243 S13: 0.4968 REMARK 3 S21: -0.7808 S22: -0.5106 S23: -0.1363 REMARK 3 S31: -0.5284 S32: 0.4987 S33: -0.0709 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4194 17.6622 -30.2908 REMARK 3 T TENSOR REMARK 3 T11: 1.3074 T22: 0.9526 REMARK 3 T33: 0.9514 T12: -0.3440 REMARK 3 T13: 0.0176 T23: 0.1655 REMARK 3 L TENSOR REMARK 3 L11: 3.9445 L22: 3.8861 REMARK 3 L33: 6.4866 L12: -2.1873 REMARK 3 L13: -0.9501 L23: 2.3891 REMARK 3 S TENSOR REMARK 3 S11: -0.7421 S12: 0.1127 S13: -0.4557 REMARK 3 S21: -0.1817 S22: 0.2612 S23: 0.6971 REMARK 3 S31: 2.8154 S32: -0.5394 S33: 0.4363 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9264 26.1540 -28.4643 REMARK 3 T TENSOR REMARK 3 T11: 0.5320 T22: 1.2748 REMARK 3 T33: 0.9421 T12: -0.1904 REMARK 3 T13: 0.0458 T23: 0.0928 REMARK 3 L TENSOR REMARK 3 L11: 1.4163 L22: 3.6693 REMARK 3 L33: 1.9358 L12: -0.7751 REMARK 3 L13: -0.8035 L23: 0.4794 REMARK 3 S TENSOR REMARK 3 S11: -0.4464 S12: 0.3913 S13: 0.0800 REMARK 3 S21: -0.4965 S22: 0.3683 S23: 0.9013 REMARK 3 S31: 0.2603 S32: -0.8340 S33: 0.0875 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1223 43.8771 -14.0452 REMARK 3 T TENSOR REMARK 3 T11: 0.4791 T22: 0.9577 REMARK 3 T33: 0.6775 T12: 0.1775 REMARK 3 T13: 0.2049 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 4.0701 L22: 3.3402 REMARK 3 L33: 4.0979 L12: -0.6753 REMARK 3 L13: -0.1823 L23: -0.5539 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: -0.4681 S13: 0.0307 REMARK 3 S21: 0.4289 S22: 0.0779 S23: 0.3916 REMARK 3 S31: -0.6944 S32: -0.5286 S33: -0.1512 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43351 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 212.6 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML IRAK4 MIXED WITH REMARK 280 STAUROSPROINE AT A 2:1 MOLAR EXCESS. PROTEIN SOLUTION MIXED 1:1 REMARK 280 WITH 1.6-1.9 M AMMONIUM SULFATE, 100 MM HEPES-NAOH AT PH7., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.34633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 282.69267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 212.01950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 353.36583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.67317 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 141.34633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 282.69267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 353.36583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 212.01950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.67317 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 149 REMARK 465 ALA A 150 REMARK 465 MET A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLU A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 PHE A 165 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 465 THR A 222 REMARK 465 THR A 223 REMARK 465 GLU A 224 REMARK 465 GLU A 225 REMARK 465 SER A 253 REMARK 465 ASP A 254 REMARK 465 GLY A 255 REMARK 465 ASP A 256 REMARK 465 ASP A 257 REMARK 465 ARG A 334 REMARK 465 ALA A 335 REMARK 465 SER A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 GLY B 149 REMARK 465 ALA B 150 REMARK 465 MET B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 GLU B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ARG B 164 REMARK 465 PHE B 165 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 ILE B 221 REMARK 465 THR B 222 REMARK 465 THR B 223 REMARK 465 GLU B 224 REMARK 465 GLU B 225 REMARK 465 GLY B 255 REMARK 465 ASP B 256 REMARK 465 ASP B 257 REMARK 465 GLY B 331 REMARK 465 LEU B 332 REMARK 465 ALA B 333 REMARK 465 ARG B 334 REMARK 465 ALA B 335 REMARK 465 SER B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 THR B 342 REMARK 465 ALA B 459 REMARK 465 SER B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 345 O2 SO4 B 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 179 46.45 36.68 REMARK 500 ASN A 206 -140.13 58.64 REMARK 500 ASN A 207 40.26 -105.67 REMARK 500 PHE A 251 -155.35 -139.13 REMARK 500 ASN A 311 46.00 -161.88 REMARK 500 SER A 328 -157.39 -101.08 REMARK 500 ASP A 329 88.18 29.30 REMARK 500 THR A 345 149.06 -175.30 REMARK 500 ARG A 347 74.36 -106.42 REMARK 500 GLU A 406 22.07 49.08 REMARK 500 MET A 418 135.60 -174.30 REMARK 500 ASN B 178 54.77 71.14 REMARK 500 SER B 186 6.02 -60.89 REMARK 500 ASN B 206 63.98 61.59 REMARK 500 ALA B 216 -154.00 -126.41 REMARK 500 SER B 253 66.97 -118.17 REMARK 500 ASP B 278 16.17 58.45 REMARK 500 HIS B 306 74.34 40.18 REMARK 500 ASN B 311 27.67 -158.82 REMARK 500 ILE B 312 104.40 -56.33 REMARK 500 SER B 314 33.95 -80.19 REMARK 500 ALA B 315 -1.49 -144.76 REMARK 500 ASP B 320 -165.13 -77.42 REMARK 500 ASP B 329 80.60 77.97 REMARK 500 MET B 344 -156.56 -110.98 REMARK 500 THR B 351 92.38 -64.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STU B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U97 RELATED DB: PDB DBREF 4U9A A 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 DBREF 4U9A B 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 SEQADV 4U9A GLY A 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A ALA A 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A MET A 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A GLY A 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A SER A 153 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A ASN A 311 UNP Q9NWZ3 ASP 311 ENGINEERED MUTATION SEQADV 4U9A GLY B 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A ALA B 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A MET B 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A GLY B 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A SER B 153 UNP Q9NWZ3 EXPRESSION TAG SEQADV 4U9A ASN B 311 UNP Q9NWZ3 ASP 311 ENGINEERED MUTATION SEQRES 1 A 312 GLY ALA MET GLY SER GLU ASN LYS SER LEU GLU VAL SER SEQRES 2 A 312 ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS SEQRES 3 A 312 ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL SEQRES 4 A 312 GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL SEQRES 5 A 312 TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS SEQRES 6 A 312 LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU SEQRES 7 A 312 LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS SEQRES 8 A 312 CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SEQRES 9 A 312 SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET SEQRES 10 A 312 PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP SEQRES 11 A 312 GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE SEQRES 12 A 312 ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU SEQRES 13 A 312 ASN HIS HIS ILE HIS ARG ASN ILE LYS SER ALA ASN ILE SEQRES 14 A 312 LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE SEQRES 15 A 312 GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN THR VAL SEQRES 16 A 312 MET THR SER ARG ILE VAL GLY THR THR ALA TYR MET ALA SEQRES 17 A 312 PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP SEQRES 18 A 312 ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR SEQRES 19 A 312 GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU SEQRES 20 A 312 LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS SEQRES 21 A 312 THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA SEQRES 22 A 312 ASP SER THR SER VAL GLU ALA MET TYR SER VAL ALA SER SEQRES 23 A 312 GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE SEQRES 24 A 312 LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER SEQRES 1 B 312 GLY ALA MET GLY SER GLU ASN LYS SER LEU GLU VAL SER SEQRES 2 B 312 ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS SEQRES 3 B 312 ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL SEQRES 4 B 312 GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL SEQRES 5 B 312 TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS SEQRES 6 B 312 LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU SEQRES 7 B 312 LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS SEQRES 8 B 312 CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SEQRES 9 B 312 SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET SEQRES 10 B 312 PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP SEQRES 11 B 312 GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE SEQRES 12 B 312 ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU SEQRES 13 B 312 ASN HIS HIS ILE HIS ARG ASN ILE LYS SER ALA ASN ILE SEQRES 14 B 312 LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE SEQRES 15 B 312 GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN THR VAL SEQRES 16 B 312 MET THR SER ARG ILE VAL GLY THR THR ALA TYR MET ALA SEQRES 17 B 312 PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP SEQRES 18 B 312 ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR SEQRES 19 B 312 GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU SEQRES 20 B 312 LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS SEQRES 21 B 312 THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA SEQRES 22 B 312 ASP SER THR SER VAL GLU ALA MET TYR SER VAL ALA SER SEQRES 23 B 312 GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE SEQRES 24 B 312 LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER HET STU A 501 35 HET STU B 501 35 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM STU STAUROSPORINE HETNAM SO4 SULFATE ION FORMUL 3 STU 2(C28 H26 N4 O3) FORMUL 5 SO4 3(O4 S 2-) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 LYS A 227 CYS A 240 1 14 HELIX 3 AA3 LEU A 270 SER A 275 1 6 HELIX 4 AA4 CYS A 276 THR A 280 5 5 HELIX 5 AA5 SER A 284 ASN A 305 1 22 HELIX 6 AA6 ALA A 356 ARG A 361 1 6 HELIX 7 AA7 THR A 365 GLY A 383 1 19 HELIX 8 AA8 LEU A 395 LEU A 397 5 3 HELIX 9 AA9 ASP A 398 ASP A 405 1 8 HELIX 10 AB1 THR A 409 ILE A 414 1 6 HELIX 11 AB2 ASP A 422 LEU A 437 1 16 HELIX 12 AB3 ASP A 446 GLU A 456 1 11 HELIX 13 AB4 SER B 169 THR B 177 1 9 HELIX 14 AB5 PRO B 184 GLY B 188 5 5 HELIX 15 AB6 LYS B 227 CYS B 240 1 14 HELIX 16 AB7 SER B 269 SER B 275 1 7 HELIX 17 AB8 CYS B 276 THR B 280 5 5 HELIX 18 AB9 SER B 284 ASN B 305 1 22 HELIX 19 AC1 ALA B 356 ARG B 361 1 6 HELIX 20 AC2 THR B 365 GLY B 383 1 19 HELIX 21 AC3 LEU B 395 LEU B 397 5 3 HELIX 22 AC4 ASP B 398 ASP B 405 1 8 HELIX 23 AC5 ILE B 410 ILE B 414 5 5 HELIX 24 AC6 ASP B 422 LEU B 437 1 16 HELIX 25 AC7 ASP B 446 GLU B 456 1 11 SHEET 1 AA1 5 LYS A 191 GLY A 195 0 SHEET 2 AA1 5 GLY A 198 VAL A 205 -1 O VAL A 200 N GLY A 193 SHEET 3 AA1 5 THR A 208 LEU A 215 -1 O VAL A 210 N GLY A 203 SHEET 4 AA1 5 CYS A 259 VAL A 263 -1 O LEU A 260 N LYS A 213 SHEET 5 AA1 5 LEU A 248 GLY A 250 -1 N LEU A 249 O VAL A 261 SHEET 1 AA2 3 GLY A 268 SER A 269 0 SHEET 2 AA2 3 ILE A 317 LEU A 319 -1 O LEU A 319 N GLY A 268 SHEET 3 AA2 3 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA3 2 GLY A 350 THR A 351 0 SHEET 2 AA3 2 THR B 345 SER B 346 -1 O SER B 346 N GLY A 350 SHEET 1 AA4 5 LYS B 191 GLU B 194 0 SHEET 2 AA4 5 GLY B 198 TYR B 204 -1 O VAL B 200 N MET B 192 SHEET 3 AA4 5 THR B 209 LEU B 215 -1 O VAL B 212 N TYR B 201 SHEET 4 AA4 5 CYS B 259 VAL B 263 -1 O TYR B 262 N ALA B 211 SHEET 5 AA4 5 LEU B 248 SER B 252 -1 N LEU B 249 O VAL B 261 SHEET 1 AA5 2 ILE B 317 LEU B 319 0 SHEET 2 AA5 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 CISPEP 1 GLU A 392 PRO A 393 0 5.78 CISPEP 2 GLU B 392 PRO B 393 0 -2.80 SITE 1 AC1 15 MET A 192 GLY A 193 GLU A 194 GLY A 195 SITE 2 AC1 15 VAL A 200 ALA A 211 LYS A 213 VAL A 263 SITE 3 AC1 15 TYR A 264 MET A 265 ALA A 315 ASN A 316 SITE 4 AC1 15 LEU A 318 SER A 328 SO4 B 502 SITE 1 AC2 15 MET B 192 GLY B 193 GLU B 194 VAL B 200 SITE 2 AC2 15 ALA B 211 TYR B 262 VAL B 263 TYR B 264 SITE 3 AC2 15 MET B 265 GLY B 268 ALA B 315 ASN B 316 SITE 4 AC2 15 LEU B 318 SER B 328 SO4 B 503 SITE 1 AC3 4 GLY A 195 LYS A 313 STU A 501 THR B 345 SITE 1 AC4 1 STU B 501 SITE 1 AC5 3 THR B 365 LYS B 367 LYS B 441 CRYST1 87.495 87.495 424.039 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011429 0.006599 0.000000 0.00000 SCALE2 0.000000 0.013197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002358 0.00000