data_4UIV # _entry.id 4UIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4UIV PDBE EBI-63537 WWPDB D_1290063537 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UIT unspecified ;BROMODOMAIN OF HUMAN BRD9 WITH 7-(3,4-DIMETHOXYPHENYL )-2-(4-METHANESULFONYLPIPERAZINE-1-CARBONYL)-5-METHYL- 4H,5H-THIENO-3,2-C-PYRIDIN-4-ONE ; PDB 4UIU unspecified ;BROMODOMAIN OF HUMAN BRD9 WITH 7-(3,4-DIMETHOXYPHENYL )-N-(1,1-DIOXO-1-THIAN-4-YL)-5-METHYL-4-OXO- 4H,5H-THIENO-3,2-C-PYRIDINE-2-CARBOXAMIDE ; PDB 4UIW unspecified ;BROMODOMAIN OF HUMAN BRD9 WITH N-(1,1-DIOXO-1- THIAN-4-YL)-5-ETHYL-4-OXO-7-3-(TRIFLUOROMETHYL) PHENYL-4H,5H-THIENO-3,2-C-PYRIDINE-2-CARBOXIMIDAMIDE ; PDB 4UIX unspecified ;N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 7-(3,4- DIMETHOXYPHENYL)-N-(1,1-DIOXO-1-THIAN-4-YL)-5- METHYL-4-OXO-4H,5H-THIENO-3,2-C-PYRIDINE-2- CARBOXAMIDE ; PDB 4UIY unspecified ;N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH N-(1,1- DIOXO-1-THIAN-4-YL)-5-METHYL-4-OXO-7-3-( TRIFLUOROMETHYL)PHENYL-4H,5H-THIENO-3,2-C-PYRIDINE-2 -CARBOXIMIDAMIDE ; PDB 4UIZ unspecified ;N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 7-(3,4- DIMETHOXYPHENYL)-2-(4-METHANESULFONYLPIPERAZINE-1-CARBONYL )-5-METHYL-4H,5H-THIENO-3,2-C-PYRIDIN-4-ONE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UIV _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-04-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chung, C.' 1 'Theodoulou, N.T.' 2 'Bamborough, P.' 3 'Humphreys, P.G.' 4 # _citation.id primary _citation.title 'The Discovery of I-Brd9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 59 _citation.page_first 1425 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25856009 _citation.pdbx_database_id_DOI 10.1021/ACS.JMEDCHEM.5B00256 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Theodoulou, N.H.' 1 ? primary 'Bamborough, P.' 2 ? primary 'Bannister, A.J.' 3 ? primary 'Becher, I.' 4 ? primary 'Bit, R.A.' 5 ? primary 'Che, K.H.' 6 ? primary 'Chung, C.' 7 ? primary 'Dittmann, A.' 8 ? primary 'Drewes, G.' 9 ? primary 'Drewry, D.H.' 10 ? primary 'Gordon, L.' 11 ? primary 'Grandi, P.' 12 ? primary 'Leveridge, M.' 13 ? primary 'Lindon, M.' 14 ? primary 'Michon, A.' 15 ? primary 'Molnar, J.' 16 ? primary 'Robson, S.C.' 17 ? primary 'Tomkinson, N.C.O.' 18 ? primary 'Kouzarides, T.' 19 ? primary 'Prinjha, R.K.' 20 ? primary 'Humphreys, P.G.' 21 ? # _cell.entry_id 4UIV _cell.length_a 24.682 _cell.length_b 33.836 _cell.length_c 39.542 _cell.angle_alpha 68.09 _cell.angle_beta 73.70 _cell.angle_gamma 73.35 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UIV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BROMODOMAIN-CONTAINING PROTEIN 9' 12228.203 1 ? ? 'BROMODOMAIN OF BRD9, UNP RESIDUES 134-238' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn 'N-(1,1-dioxo-1-thian-4-yl)-5-methyl-4-oxo-7-3-(trifluoromethyl)phenyl-4H,5H-thieno-3,2-c-pyridine-2-carboximidamide' 483.527 1 ? ? ? ? 4 water nat water 18.015 208 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8, HUMAN BRD9' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNA MTYNRPDTVYYKLAKKILHAGFKMMS ; _entity_poly.pdbx_seq_one_letter_code_can ;GAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNA MTYNRPDTVYYKLAKKILHAGFKMMS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLU n 1 4 ASN n 1 5 GLU n 1 6 SER n 1 7 THR n 1 8 PRO n 1 9 ILE n 1 10 GLN n 1 11 GLN n 1 12 LEU n 1 13 LEU n 1 14 GLU n 1 15 HIS n 1 16 PHE n 1 17 LEU n 1 18 ARG n 1 19 GLN n 1 20 LEU n 1 21 GLN n 1 22 ARG n 1 23 LYS n 1 24 ASP n 1 25 PRO n 1 26 HIS n 1 27 GLY n 1 28 PHE n 1 29 PHE n 1 30 ALA n 1 31 PHE n 1 32 PRO n 1 33 VAL n 1 34 THR n 1 35 ASP n 1 36 ALA n 1 37 ILE n 1 38 ALA n 1 39 PRO n 1 40 GLY n 1 41 TYR n 1 42 SER n 1 43 MET n 1 44 ILE n 1 45 ILE n 1 46 LYS n 1 47 HIS n 1 48 PRO n 1 49 MET n 1 50 ASP n 1 51 PHE n 1 52 GLY n 1 53 THR n 1 54 MET n 1 55 LYS n 1 56 ASP n 1 57 LYS n 1 58 ILE n 1 59 VAL n 1 60 ALA n 1 61 ASN n 1 62 GLU n 1 63 TYR n 1 64 LYS n 1 65 SER n 1 66 VAL n 1 67 THR n 1 68 GLU n 1 69 PHE n 1 70 LYS n 1 71 ALA n 1 72 ASP n 1 73 PHE n 1 74 LYS n 1 75 LEU n 1 76 MET n 1 77 CYS n 1 78 ASP n 1 79 ASN n 1 80 ALA n 1 81 MET n 1 82 THR n 1 83 TYR n 1 84 ASN n 1 85 ARG n 1 86 PRO n 1 87 ASP n 1 88 THR n 1 89 VAL n 1 90 TYR n 1 91 TYR n 1 92 LYS n 1 93 LEU n 1 94 ALA n 1 95 LYS n 1 96 LYS n 1 97 ILE n 1 98 LEU n 1 99 HIS n 1 100 ALA n 1 101 GLY n 1 102 PHE n 1 103 LYS n 1 104 MET n 1 105 MET n 1 106 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD9_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9H8M2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4UIV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9H8M2 _struct_ref_seq.db_align_beg 134 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 18 _struct_ref_seq.pdbx_auth_seq_align_end 122 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4UIV _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9H8M2 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 17 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XZB non-polymer . 'N-(1,1-dioxo-1-thian-4-yl)-5-methyl-4-oxo-7-3-(trifluoromethyl)phenyl-4H,5H-thieno-3,2-c-pyridine-2-carboximidamide' ? 'C21 H20 F3 N3 O3 S2' 483.527 # _exptl.entry_id 4UIV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.75 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MORPHEUS BUFFER PH 6.5, 30% MORPHEUS_EDO_P8K,0.1M MORPHEUS AMINO ACIDS 4C' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2014-11-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4UIV _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.22 _reflns.d_resolution_high 1.72 _reflns.number_obs 10790 _reflns.number_all ? _reflns.percent_possible_obs 91.5 _reflns.pdbx_Rmerge_I_obs 0.02 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.72 _reflns_shell.d_res_low 1.82 _reflns_shell.percent_possible_all 83.0 _reflns_shell.Rmerge_I_obs 0.06 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.80 _reflns_shell.pdbx_redundancy 1.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4UIV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10171 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.22 _refine.ls_d_res_high 1.72 _refine.ls_percent_reflns_obs 90.62 _refine.ls_R_factor_obs 0.14029 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13855 _refine.ls_R_factor_R_free 0.17337 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 517 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 17.220 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.04 _refine.aniso_B[3][3] 0.05 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.07 _refine.aniso_B[2][3] -0.21 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.109 _refine.pdbx_overall_ESU_R_Free 0.103 _refine.overall_SU_ML 0.061 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.387 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 821 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 208 _refine_hist.number_atoms_total 1065 _refine_hist.d_res_high 1.72 _refine_hist.d_res_low 28.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.019 ? 911 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 640 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.642 1.952 ? 1238 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.014 3.000 ? 1567 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.226 5.000 ? 110 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.293 23.784 ? 37 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.046 15.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.659 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 128 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.056 0.021 ? 976 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 186 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.723 _refine_ls_shell.d_res_low 1.768 _refine_ls_shell.number_reflns_R_work 675 _refine_ls_shell.R_factor_R_work 0.194 _refine_ls_shell.percent_reflns_obs 77.90 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4UIV _struct.title ;BROMODOMAIN OF HUMAN BRD9 WITH N-(1,1-dioxo-1-thian-4-yl)-5-methyl-4- oxo-7-3-(trifluoromethyl)phenyl-4H,5H-thieno-3,2-c-pyridine-2- carboximidamide ; _struct.pdbx_descriptor 'BROMODOMAIN-CONTAINING PROTEIN 9' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UIV _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, INHIBITOR, HISTONE, EPIGENETIC READER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? LYS A 23 ? THR A 23 LYS A 39 1 ? 17 HELX_P HELX_P2 2 GLY A 40 ? ILE A 45 ? GLY A 56 ILE A 61 1 ? 6 HELX_P HELX_P3 3 ASP A 50 ? ALA A 60 ? ASP A 66 ALA A 76 1 ? 11 HELX_P HELX_P4 4 SER A 65 ? ASN A 84 ? SER A 81 ASN A 100 1 ? 20 HELX_P HELX_P5 5 THR A 88 ? MET A 105 ? THR A 104 MET A 121 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 1123' AC2 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE XZB A 1124' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLN A 21 ? GLN A 37 . ? 1_555 ? 2 AC1 7 ALA A 30 ? ALA A 46 . ? 1_555 ? 3 AC1 7 GLY A 52 ? GLY A 68 . ? 1_555 ? 4 AC1 7 PHE A 102 ? PHE A 118 . ? 1_655 ? 5 AC1 7 HOH D . ? HOH A 2039 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 2130 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 2207 . ? 1_555 ? 8 AC2 13 PHE A 28 ? PHE A 44 . ? 1_555 ? 9 AC2 13 PHE A 29 ? PHE A 45 . ? 1_555 ? 10 AC2 13 VAL A 33 ? VAL A 49 . ? 1_555 ? 11 AC2 13 ILE A 37 ? ILE A 53 . ? 1_555 ? 12 AC2 13 ALA A 38 ? ALA A 54 . ? 1_555 ? 13 AC2 13 TYR A 83 ? TYR A 99 . ? 1_555 ? 14 AC2 13 ASN A 84 ? ASN A 100 . ? 1_555 ? 15 AC2 13 ARG A 85 ? ARG A 101 . ? 1_555 ? 16 AC2 13 THR A 88 ? THR A 104 . ? 1_555 ? 17 AC2 13 TYR A 90 ? TYR A 106 . ? 1_555 ? 18 AC2 13 LYS A 95 ? LYS A 111 . ? 1_655 ? 19 AC2 13 HOH D . ? HOH A 2110 . ? 1_555 ? 20 AC2 13 HOH D . ? HOH A 2208 . ? 1_555 ? # _database_PDB_matrix.entry_id 4UIV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4UIV _atom_sites.fract_transf_matrix[1][1] 0.040515 _atom_sites.fract_transf_matrix[1][2] -0.012117 _atom_sites.fract_transf_matrix[1][3] -0.008429 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030848 _atom_sites.fract_transf_matrix[2][3] -0.010359 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027795 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 17 ? ? ? A . n A 1 2 ALA 2 18 ? ? ? A . n A 1 3 GLU 3 19 ? ? ? A . n A 1 4 ASN 4 20 ? ? ? A . n A 1 5 GLU 5 21 ? ? ? A . n A 1 6 SER 6 22 22 SER SER A . n A 1 7 THR 7 23 23 THR THR A . n A 1 8 PRO 8 24 24 PRO PRO A . n A 1 9 ILE 9 25 25 ILE ILE A . n A 1 10 GLN 10 26 26 GLN GLN A . n A 1 11 GLN 11 27 27 GLN GLN A . n A 1 12 LEU 12 28 28 LEU LEU A . n A 1 13 LEU 13 29 29 LEU LEU A . n A 1 14 GLU 14 30 30 GLU GLU A . n A 1 15 HIS 15 31 31 HIS HIS A . n A 1 16 PHE 16 32 32 PHE PHE A . n A 1 17 LEU 17 33 33 LEU LEU A . n A 1 18 ARG 18 34 34 ARG ARG A . n A 1 19 GLN 19 35 35 GLN GLN A . n A 1 20 LEU 20 36 36 LEU LEU A . n A 1 21 GLN 21 37 37 GLN GLN A . n A 1 22 ARG 22 38 38 ARG ARG A . n A 1 23 LYS 23 39 39 LYS LYS A . n A 1 24 ASP 24 40 40 ASP ASP A . n A 1 25 PRO 25 41 41 PRO PRO A . n A 1 26 HIS 26 42 42 HIS HIS A . n A 1 27 GLY 27 43 43 GLY GLY A . n A 1 28 PHE 28 44 44 PHE PHE A . n A 1 29 PHE 29 45 45 PHE PHE A . n A 1 30 ALA 30 46 46 ALA ALA A . n A 1 31 PHE 31 47 47 PHE PHE A . n A 1 32 PRO 32 48 48 PRO PRO A . n A 1 33 VAL 33 49 49 VAL VAL A . n A 1 34 THR 34 50 50 THR THR A . n A 1 35 ASP 35 51 51 ASP ASP A . n A 1 36 ALA 36 52 52 ALA ALA A . n A 1 37 ILE 37 53 53 ILE ILE A . n A 1 38 ALA 38 54 54 ALA ALA A . n A 1 39 PRO 39 55 55 PRO PRO A . n A 1 40 GLY 40 56 56 GLY GLY A . n A 1 41 TYR 41 57 57 TYR TYR A . n A 1 42 SER 42 58 58 SER SER A . n A 1 43 MET 43 59 59 MET MET A . n A 1 44 ILE 44 60 60 ILE ILE A . n A 1 45 ILE 45 61 61 ILE ILE A . n A 1 46 LYS 46 62 62 LYS LYS A . n A 1 47 HIS 47 63 63 HIS HIS A . n A 1 48 PRO 48 64 64 PRO PRO A . n A 1 49 MET 49 65 65 MET MET A . n A 1 50 ASP 50 66 66 ASP ASP A . n A 1 51 PHE 51 67 67 PHE PHE A . n A 1 52 GLY 52 68 68 GLY GLY A . n A 1 53 THR 53 69 69 THR THR A . n A 1 54 MET 54 70 70 MET MET A . n A 1 55 LYS 55 71 71 LYS LYS A . n A 1 56 ASP 56 72 72 ASP ASP A . n A 1 57 LYS 57 73 73 LYS LYS A . n A 1 58 ILE 58 74 74 ILE ILE A . n A 1 59 VAL 59 75 75 VAL VAL A . n A 1 60 ALA 60 76 76 ALA ALA A . n A 1 61 ASN 61 77 77 ASN ASN A . n A 1 62 GLU 62 78 78 GLU GLU A . n A 1 63 TYR 63 79 79 TYR TYR A . n A 1 64 LYS 64 80 80 LYS LYS A . n A 1 65 SER 65 81 81 SER SER A . n A 1 66 VAL 66 82 82 VAL VAL A . n A 1 67 THR 67 83 83 THR THR A . n A 1 68 GLU 68 84 84 GLU GLU A . n A 1 69 PHE 69 85 85 PHE PHE A . n A 1 70 LYS 70 86 86 LYS LYS A . n A 1 71 ALA 71 87 87 ALA ALA A . n A 1 72 ASP 72 88 88 ASP ASP A . n A 1 73 PHE 73 89 89 PHE PHE A . n A 1 74 LYS 74 90 90 LYS LYS A . n A 1 75 LEU 75 91 91 LEU LEU A . n A 1 76 MET 76 92 92 MET MET A . n A 1 77 CYS 77 93 93 CYS CYS A . n A 1 78 ASP 78 94 94 ASP ASP A . n A 1 79 ASN 79 95 95 ASN ASN A . n A 1 80 ALA 80 96 96 ALA ALA A . n A 1 81 MET 81 97 97 MET MET A . n A 1 82 THR 82 98 98 THR THR A . n A 1 83 TYR 83 99 99 TYR TYR A . n A 1 84 ASN 84 100 100 ASN ASN A . n A 1 85 ARG 85 101 101 ARG ARG A . n A 1 86 PRO 86 102 102 PRO PRO A . n A 1 87 ASP 87 103 103 ASP ASP A . n A 1 88 THR 88 104 104 THR THR A . n A 1 89 VAL 89 105 105 VAL VAL A . n A 1 90 TYR 90 106 106 TYR TYR A . n A 1 91 TYR 91 107 107 TYR TYR A . n A 1 92 LYS 92 108 108 LYS LYS A . n A 1 93 LEU 93 109 109 LEU LEU A . n A 1 94 ALA 94 110 110 ALA ALA A . n A 1 95 LYS 95 111 111 LYS LYS A . n A 1 96 LYS 96 112 112 LYS LYS A . n A 1 97 ILE 97 113 113 ILE ILE A . n A 1 98 LEU 98 114 114 LEU LEU A . n A 1 99 HIS 99 115 115 HIS HIS A . n A 1 100 ALA 100 116 116 ALA ALA A . n A 1 101 GLY 101 117 117 GLY GLY A . n A 1 102 PHE 102 118 118 PHE PHE A . n A 1 103 LYS 103 119 119 LYS LYS A . n A 1 104 MET 104 120 120 MET MET A . n A 1 105 MET 105 121 121 MET MET A . n A 1 106 SER 106 122 122 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 1123 1123 EDO EDO A . C 3 XZB 1 1124 1124 XZB XZB A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2116 2116 HOH HOH A . D 4 HOH 117 2117 2117 HOH HOH A . D 4 HOH 118 2118 2118 HOH HOH A . D 4 HOH 119 2119 2119 HOH HOH A . D 4 HOH 120 2120 2120 HOH HOH A . D 4 HOH 121 2121 2121 HOH HOH A . D 4 HOH 122 2122 2122 HOH HOH A . D 4 HOH 123 2123 2123 HOH HOH A . D 4 HOH 124 2124 2124 HOH HOH A . D 4 HOH 125 2125 2125 HOH HOH A . D 4 HOH 126 2126 2126 HOH HOH A . D 4 HOH 127 2127 2127 HOH HOH A . D 4 HOH 128 2128 2128 HOH HOH A . D 4 HOH 129 2129 2129 HOH HOH A . D 4 HOH 130 2130 2130 HOH HOH A . D 4 HOH 131 2131 2131 HOH HOH A . D 4 HOH 132 2132 2132 HOH HOH A . D 4 HOH 133 2133 2133 HOH HOH A . D 4 HOH 134 2134 2134 HOH HOH A . D 4 HOH 135 2135 2135 HOH HOH A . D 4 HOH 136 2136 2136 HOH HOH A . D 4 HOH 137 2137 2137 HOH HOH A . D 4 HOH 138 2138 2138 HOH HOH A . D 4 HOH 139 2139 2139 HOH HOH A . D 4 HOH 140 2140 2140 HOH HOH A . D 4 HOH 141 2141 2141 HOH HOH A . D 4 HOH 142 2142 2142 HOH HOH A . D 4 HOH 143 2143 2143 HOH HOH A . D 4 HOH 144 2144 2144 HOH HOH A . D 4 HOH 145 2145 2145 HOH HOH A . D 4 HOH 146 2146 2146 HOH HOH A . D 4 HOH 147 2147 2147 HOH HOH A . D 4 HOH 148 2148 2148 HOH HOH A . D 4 HOH 149 2149 2149 HOH HOH A . D 4 HOH 150 2150 2150 HOH HOH A . D 4 HOH 151 2151 2151 HOH HOH A . D 4 HOH 152 2152 2152 HOH HOH A . D 4 HOH 153 2153 2153 HOH HOH A . D 4 HOH 154 2154 2154 HOH HOH A . D 4 HOH 155 2155 2155 HOH HOH A . D 4 HOH 156 2156 2156 HOH HOH A . D 4 HOH 157 2157 2157 HOH HOH A . D 4 HOH 158 2158 2158 HOH HOH A . D 4 HOH 159 2159 2159 HOH HOH A . D 4 HOH 160 2160 2160 HOH HOH A . D 4 HOH 161 2161 2161 HOH HOH A . D 4 HOH 162 2162 2162 HOH HOH A . D 4 HOH 163 2163 2163 HOH HOH A . D 4 HOH 164 2164 2164 HOH HOH A . D 4 HOH 165 2165 2165 HOH HOH A . D 4 HOH 166 2166 2166 HOH HOH A . D 4 HOH 167 2167 2167 HOH HOH A . D 4 HOH 168 2168 2168 HOH HOH A . D 4 HOH 169 2169 2169 HOH HOH A . D 4 HOH 170 2170 2170 HOH HOH A . D 4 HOH 171 2171 2171 HOH HOH A . D 4 HOH 172 2172 2172 HOH HOH A . D 4 HOH 173 2173 2173 HOH HOH A . D 4 HOH 174 2174 2174 HOH HOH A . D 4 HOH 175 2175 2175 HOH HOH A . D 4 HOH 176 2176 2176 HOH HOH A . D 4 HOH 177 2177 2177 HOH HOH A . D 4 HOH 178 2178 2178 HOH HOH A . D 4 HOH 179 2179 2179 HOH HOH A . D 4 HOH 180 2180 2180 HOH HOH A . D 4 HOH 181 2181 2181 HOH HOH A . D 4 HOH 182 2182 2182 HOH HOH A . D 4 HOH 183 2183 2183 HOH HOH A . D 4 HOH 184 2184 2184 HOH HOH A . D 4 HOH 185 2185 2185 HOH HOH A . D 4 HOH 186 2186 2186 HOH HOH A . D 4 HOH 187 2187 2187 HOH HOH A . D 4 HOH 188 2188 2188 HOH HOH A . D 4 HOH 189 2189 2189 HOH HOH A . D 4 HOH 190 2190 2190 HOH HOH A . D 4 HOH 191 2191 2191 HOH HOH A . D 4 HOH 192 2192 2192 HOH HOH A . D 4 HOH 193 2193 2193 HOH HOH A . D 4 HOH 194 2194 2194 HOH HOH A . D 4 HOH 195 2195 2195 HOH HOH A . D 4 HOH 196 2196 2196 HOH HOH A . D 4 HOH 197 2197 2197 HOH HOH A . D 4 HOH 198 2198 2198 HOH HOH A . D 4 HOH 199 2199 2199 HOH HOH A . D 4 HOH 200 2200 2200 HOH HOH A . D 4 HOH 201 2201 2201 HOH HOH A . D 4 HOH 202 2202 2202 HOH HOH A . D 4 HOH 203 2203 2203 HOH HOH A . D 4 HOH 204 2204 2204 HOH HOH A . D 4 HOH 205 2205 2205 HOH HOH A . D 4 HOH 206 2206 2206 HOH HOH A . D 4 HOH 207 2207 2207 HOH HOH A . D 4 HOH 208 2208 2208 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-22 2 'Structure model' 1 1 2016-03-09 3 'Structure model' 1 2 2017-06-28 4 'Structure model' 1 3 2019-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.type' 2 4 'Structure model' '_exptl_crystal_grow.temp' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -4.7418 _pdbx_refine_tls.origin_y 4.8553 _pdbx_refine_tls.origin_z 3.6407 _pdbx_refine_tls.T[1][1] 0.0403 _pdbx_refine_tls.T[2][2] 0.0092 _pdbx_refine_tls.T[3][3] 0.0127 _pdbx_refine_tls.T[1][2] 0.0053 _pdbx_refine_tls.T[1][3] -0.0051 _pdbx_refine_tls.T[2][3] 0.0050 _pdbx_refine_tls.L[1][1] 1.3164 _pdbx_refine_tls.L[2][2] 0.2640 _pdbx_refine_tls.L[3][3] 0.2151 _pdbx_refine_tls.L[1][2] 0.2436 _pdbx_refine_tls.L[1][3] -0.1357 _pdbx_refine_tls.L[2][3] 0.1837 _pdbx_refine_tls.S[1][1] 0.0162 _pdbx_refine_tls.S[1][2] -0.0394 _pdbx_refine_tls.S[1][3] 0.0653 _pdbx_refine_tls.S[2][1] -0.0045 _pdbx_refine_tls.S[2][2] -0.0115 _pdbx_refine_tls.S[2][3] 0.0163 _pdbx_refine_tls.S[3][1] -0.0001 _pdbx_refine_tls.S[3][2] 0.0007 _pdbx_refine_tls.S[3][3] -0.0047 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 22 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 122 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.6.0117 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2056 ? ? O A HOH 2060 ? ? 2.04 2 1 O A HOH 2027 ? ? O A HOH 2037 ? ? 2.10 3 1 O A HOH 2091 ? ? O A HOH 2092 ? ? 2.13 4 1 O A HOH 2094 ? ? O A HOH 2155 ? ? 2.14 5 1 O A HOH 2075 ? ? O A HOH 2135 ? ? 2.15 6 1 O A HOH 2137 ? ? O A HOH 2145 ? ? 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2160 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2207 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2035 ? 6.78 . 2 1 O ? A HOH 2048 ? 6.42 . 3 1 O ? A HOH 2054 ? 6.01 . 4 1 O ? A HOH 2102 ? 7.24 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 17 ? A GLY 1 2 1 Y 1 A ALA 18 ? A ALA 2 3 1 Y 1 A GLU 19 ? A GLU 3 4 1 Y 1 A ASN 20 ? A ASN 4 5 1 Y 1 A GLU 21 ? A GLU 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'N-(1,1-dioxo-1-thian-4-yl)-5-methyl-4-oxo-7-3-(trifluoromethyl)phenyl-4H,5H-thieno-3,2-c-pyridine-2-carboximidamide' XZB 4 water HOH #