HEADER VIRAL PROTEIN 31-MAY-14 4UO8 TITLE STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN TITLE 2 COMPLEX WITH 6SO4-3SLN CAVEAT 4UO8 NAG D 1 HAS WRONG CHIRALITY AT ATOM C1 MAN D 5 HAS WRONG CAVEAT 2 4UO8 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEMAGGLUTININ, H3 HAEMAGGLUTININ HA1 CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HA2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HEMAGGLUTININ, H3 HAEMAGGLUTININ HA2 CHAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/CANINE/COLORADO/17864/2006(H3N8)); SOURCE 4 ORGANISM_TAXID: 867285; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACGP67 DERIVATIVE; SOURCE 10 OTHER_DETAILS: DR. EDWARD J. DUBOVI AND DR. COLIN PARRISH, CORNELL SOURCE 11 UNIVERSITY, ITHACA, NY, USA; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 14 (A/CANINE/COLORADO/17864/2006(H3N8)); SOURCE 15 ORGANISM_TAXID: 867285; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PACGP67 DERIVATIVE; SOURCE 21 OTHER_DETAILS: DR. EDWARD J. DUBOVI AND DR. COLIN PARRISH, CORNELL SOURCE 22 UNIVERSITY, ITHACA, NY, USA KEYWDS VIRAL PROTEIN, EQUINE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.VACHIERI,P.J.COLLINS,L.F.HAIRE,R.W.OGRODOWICZ,S.R.MARTIN, AUTHOR 2 P.A.WALKER,X.XIONG,S.J.GAMBLIN,J.J.SKEHEL REVDAT 4 10-JAN-24 4UO8 1 HETSYN REVDAT 3 29-JUL-20 4UO8 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-AUG-14 4UO8 1 JRNL REVDAT 1 23-JUL-14 4UO8 0 JRNL AUTH P.J.COLLINS,S.G.VACHIERI,L.F.HAIRE,R.W.OGRODOWICZ, JRNL AUTH 2 S.R.MARTIN,P.A.WALKER,X.XIONG,S.J.GAMBLIN,J.J.SKEHEL JRNL TITL RECENT EVOLUTION OF EQUINE INFLUENZA AND THE ORIGIN OF JRNL TITL 2 CANINE INFLUENZA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 11175 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25024224 JRNL DOI 10.1073/PNAS.1406606111 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1417 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 290 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.20000 REMARK 3 B22 (A**2) : 4.20000 REMARK 3 B33 (A**2) : -13.62000 REMARK 3 B12 (A**2) : 4.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.776 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4279 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3881 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5821 ; 1.286 ; 2.017 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8882 ; 0.834 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;37.280 ;24.569 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 685 ;16.460 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.813 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4665 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 959 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 703 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0817 106.1499 -4.9671 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1565 REMARK 3 T33: 0.3669 T12: -0.0148 REMARK 3 T13: -0.0587 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.9351 L22: 0.6270 REMARK 3 L33: 3.4323 L12: -0.0858 REMARK 3 L13: 1.0624 L23: -0.4923 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.3004 S13: 0.0045 REMARK 3 S21: -0.2012 S22: -0.0372 S23: 0.1285 REMARK 3 S31: 0.1582 S32: 0.0317 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6275 107.3674 45.4071 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.0790 REMARK 3 T33: 0.2514 T12: -0.0209 REMARK 3 T13: 0.0143 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.7332 L22: 0.4629 REMARK 3 L33: 7.6884 L12: 0.0176 REMARK 3 L13: -1.0194 L23: 0.2351 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: -0.1517 S13: -0.1139 REMARK 3 S21: 0.1344 S22: -0.0585 S23: 0.1177 REMARK 3 S31: -0.1210 S32: -0.3126 S33: -0.0027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4UO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20478 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4UO4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 174.13350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 174.13350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 174.13350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 174.13350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 174.13350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 174.13350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 97.28900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 168.50949 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -97.28900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 168.50949 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 238 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 BMA E 3 O5 MAN E 5 2.05 REMARK 500 OD1 ASN A 290 O LYS A 304 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 64.75 -101.43 REMARK 500 THR A 28 -166.23 -128.83 REMARK 500 LYS A 54 -75.41 -94.05 REMARK 500 ARG A 62 -124.36 52.11 REMARK 500 TYR A 81 -13.19 73.25 REMARK 500 ASN A 96 39.69 -146.91 REMARK 500 TRP A 127 76.73 -114.34 REMARK 500 SER A 159 46.93 -140.11 REMARK 500 THR A 163 103.75 -48.66 REMARK 500 ASN A 173 13.36 90.22 REMARK 500 ARG A 201 142.17 -173.25 REMARK 500 GLN A 210 132.83 -177.25 REMARK 500 ASN A 298 135.23 -171.35 REMARK 500 GLU A 325 -61.97 -92.75 REMARK 500 ALA B 5 -63.03 -100.81 REMARK 500 ASN B 28 -166.45 -161.60 REMARK 500 ARG B 58 124.88 -39.87 REMARK 500 PHE B 63 -127.54 -117.08 REMARK 500 GLN B 65 -136.25 -150.18 REMARK 500 ARG B 127 -128.30 55.93 REMARK 500 TYR B 141 31.02 -86.05 REMARK 500 ASP B 145 -172.47 -69.11 REMARK 500 GLN B 172 -19.94 -43.53 REMARK 500 SER B 173 -160.75 -116.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UNW RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ REMARK 900 RELATED ID: 4UNX RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN REMARK 900 COMPLEX WITH 3SLN REMARK 900 RELATED ID: 4UNY RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN REMARK 900 COMPLEX WITH 6SO4-3SLN REMARK 900 RELATED ID: 4UNZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN REMARK 900 COMPLEX WITH 6SO4-SIALYL LEWIS X REMARK 900 RELATED ID: 4UO0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ REMARK 900 RELATED ID: 4UO1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX REMARK 900 WITH 3SLN REMARK 900 RELATED ID: 4UO2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX REMARK 900 WITH SIALYL LEWIS X REMARK 900 RELATED ID: 4UO3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ MUTANT REMARK 900 SER30THR REMARK 900 RELATED ID: 4UO4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ REMARK 900 RELATED ID: 4UO5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN REMARK 900 COMPLEX WITH 3SLN REMARK 900 RELATED ID: 4UO6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN REMARK 900 COMPLEX WITH SIALYL LEWIS X REMARK 900 RELATED ID: 4UO7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN REMARK 900 COMPLEX WITH 6SO4 SIALYL LEWIS X REMARK 900 RELATED ID: 4UO9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ REMARK 900 SER30THR MUTANT REMARK 900 RELATED ID: 4UOA RELATED DB: PDB REMARK 900 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ REMARK 900 MET29ILE MUTANT DBREF 4UO8 A 2 329 UNP E0UVR5 E0UVR5_9INFA 17 344 DBREF 4UO8 B 1 172 UNP E0UVR5 E0UVR5_9INFA 345 516 SEQADV 4UO8 SER B 173 UNP E0UVR5 EXPRESSION TAG SEQADV 4UO8 GLY B 174 UNP E0UVR5 EXPRESSION TAG SEQADV 4UO8 ARG B 175 UNP E0UVR5 EXPRESSION TAG SEQADV 4UO8 GLU B 131 UNP E0UVR5 ASP 475 CONFLICT SEQRES 1 A 328 GLN ASN PRO ILE SER GLY ASN ASN THR ALA THR LEU CYS SEQRES 2 A 328 LEU GLY HIS HIS ALA VAL ALA ASN GLY THR LEU VAL LYS SEQRES 3 A 328 THR MET SER ASP ASP GLN ILE GLU VAL THR ASN ALA THR SEQRES 4 A 328 GLU LEU VAL GLN SER ILE SER MET GLY LYS ILE CYS ASN SEQRES 5 A 328 LYS SER TYR ARG ILE LEU ASP GLY ARG ASN CYS THR LEU SEQRES 6 A 328 ILE ASP ALA MET LEU GLY ASP PRO HIS CYS ASP ALA PHE SEQRES 7 A 328 GLN TYR GLU SER TRP ASP LEU PHE ILE GLU ARG SER ASN SEQRES 8 A 328 ALA PHE SER ASN CYS TYR PRO TYR ASP ILE PRO ASP TYR SEQRES 9 A 328 ALA SER LEU ARG SER ILE VAL ALA SER SER GLY THR VAL SEQRES 10 A 328 GLU PHE THR ALA GLU GLY PHE THR TRP THR GLY VAL THR SEQRES 11 A 328 GLN ASN GLY ARG SER GLY ALA CYS LYS ARG GLY SER ALA SEQRES 12 A 328 ASP SER PHE PHE SER ARG LEU ASN TRP LEU THR LYS SER SEQRES 13 A 328 GLY SER SER TYR PRO THR LEU ASN VAL THR MET PRO ASN SEQRES 14 A 328 ASN LYS ASN PHE ASP LYS LEU TYR ILE TRP GLY ILE HIS SEQRES 15 A 328 HIS PRO SER SER ASN GLN GLU GLN THR LYS LEU TYR ILE SEQRES 16 A 328 GLN GLU SER GLY ARG VAL THR VAL SER THR LYS ARG SER SEQRES 17 A 328 GLN GLN THR ILE ILE PRO ASN ILE GLY SER ARG PRO LEU SEQRES 18 A 328 VAL ARG GLY GLN SER GLY ARG ILE SER ILE TYR TRP THR SEQRES 19 A 328 ILE VAL LYS PRO GLY ASP ILE LEU MET ILE ASN SER ASN SEQRES 20 A 328 GLY ASN LEU VAL ALA PRO ARG GLY TYR PHE LYS LEU ASN SEQRES 21 A 328 THR GLY LYS SER SER VAL MET ARG SER ASP VAL PRO ILE SEQRES 22 A 328 ASP ILE CYS VAL SER GLU CYS ILE THR PRO ASN GLY SER SEQRES 23 A 328 ILE SER ASN ASP LYS PRO PHE GLN ASN VAL ASN LYS VAL SEQRES 24 A 328 THR TYR GLY LYS CYS PRO LYS TYR ILE ARG GLN ASN THR SEQRES 25 A 328 LEU LYS LEU ALA THR GLY MET ARG ASN VAL PRO GLU LYS SEQRES 26 A 328 GLN THR ARG SEQRES 1 B 175 GLY ILE PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 175 TRP GLU GLY MET VAL ASP GLY TRP TYR GLY PHE ARG TYR SEQRES 3 B 175 GLN ASN SER GLU GLY THR GLY GLN ALA ALA ASP LEU LYS SEQRES 4 B 175 SER THR GLN ALA ALA ILE ASP GLN ILE ASN GLY LYS LEU SEQRES 5 B 175 ASN ARG VAL ILE GLU ARG THR ASN GLU LYS PHE HIS GLN SEQRES 6 B 175 ILE GLU LYS GLU PHE SER GLU VAL GLU GLY ARG ILE GLN SEQRES 7 B 175 ASP LEU GLU LYS TYR VAL GLU ASP THR LYS ILE ASP LEU SEQRES 8 B 175 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA LEU GLU ASN SEQRES 9 B 175 GLN HIS THR ILE ASP LEU THR ASP ALA GLU MET ASN LYS SEQRES 10 B 175 LEU PHE GLU LYS THR ARG ARG GLN LEU ARG GLU ASN ALA SEQRES 11 B 175 GLU ASP MET GLY ASP GLY CYS PHE LYS ILE TYR HIS LYS SEQRES 12 B 175 CYS ASP ASN ALA CYS ILE GLU SER ILE ARG THR GLY THR SEQRES 13 B 175 TYR ASP HIS TYR ILE TYR ARG ASP GLU ALA LEU ASN ASN SEQRES 14 B 175 ARG PHE GLN SER GLY ARG MODRES 4UO8 ASN A 22 ASN GLYCOSYLATION SITE MODRES 4UO8 ASN A 38 ASN GLYCOSYLATION SITE MODRES 4UO8 ASN A 63 ASN GLYCOSYLATION SITE MODRES 4UO8 ASN A 165 ASN GLYCOSYLATION SITE MODRES 4UO8 ASN A 285 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET BMA F 5 11 HET NGS G 1 19 HET GAL G 2 11 HET SIA G 3 20 HET NAG A 601 14 HET SO4 A1327 5 HET SO4 A1328 5 HET SO4 B1176 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NGS 2-ACETAMIDO-2-DEOXY-6-O-SULFO-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN NGS 2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-BETA-D-GLUCOPYRANOSE; HETSYN 2 NGS N-ACETYL-D-GLUCOSAMINE-6-SULFATE; N-ACETYL-6-O-SULFO- HETSYN 3 NGS BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-6-O-SULFO- HETSYN 4 NGS BETA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-6-O-SULFO-D- HETSYN 5 NGS GLUCOSE; 2-ACETAMIDO-2-DEOXY-6-O-SULFO-GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 4 BMA 4(C6 H12 O6) FORMUL 4 MAN 5(C6 H12 O6) FORMUL 7 NGS C8 H15 N O9 S FORMUL 7 GAL C6 H12 O6 FORMUL 7 SIA C11 H19 N O9 FORMUL 9 SO4 3(O4 S 2-) FORMUL 12 HOH *7(H2 O) HELIX 1 1 THR A 65 GLY A 72 1 8 HELIX 2 2 ASP A 73 GLN A 80 5 8 HELIX 3 3 ASP A 104 GLY A 116 1 13 HELIX 4 4 SER A 187 TYR A 195 1 9 HELIX 5 5 ASP B 37 ASN B 49 1 13 HELIX 6 6 LYS B 51 VAL B 55 5 5 HELIX 7 7 GLY B 75 ARG B 127 1 53 HELIX 8 8 ASP B 145 THR B 154 1 10 HELIX 9 9 ASP B 158 GLN B 172 1 15 SHEET 1 BA 5 GLY B 31 ALA B 36 0 SHEET 2 BA 5 TYR B 22 ASN B 28 -1 O PHE B 24 N ALA B 35 SHEET 3 BA 5 ALA A 11 HIS A 17 -1 O THR A 12 N GLN B 27 SHEET 4 BA 5 CYS B 137 ILE B 140 -1 O PHE B 138 N LEU A 13 SHEET 5 BA 5 ALA B 130 ASP B 132 -1 O GLU B 131 N LYS B 139 SHEET 1 AA 2 THR A 24 VAL A 26 0 SHEET 2 AA 2 ILE A 34 VAL A 36 -1 O ILE A 34 N VAL A 26 SHEET 1 AB 2 ALA A 39 GLU A 41 0 SHEET 2 AB 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AC 3 VAL A 43 GLN A 44 0 SHEET 2 AC 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AC 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AD 2 ILE A 51 CYS A 52 0 SHEET 2 AD 2 ILE A 274 ASP A 275 1 N ASP A 275 O ILE A 51 SHEET 1 AE 3 ILE A 58 ASP A 60 0 SHEET 2 AE 3 LEU A 86 GLU A 89 1 O LEU A 86 N LEU A 59 SHEET 3 AE 3 SER A 266 ARG A 269 1 O SER A 266 N PHE A 87 SHEET 1 AF 5 TYR A 100 ASP A 101 0 SHEET 2 AF 5 ARG A 229 VAL A 237 1 O ILE A 230 N ASP A 101 SHEET 3 AF 5 LYS A 176 HIS A 184 -1 O LYS A 176 N VAL A 237 SHEET 4 AF 5 LEU A 251 PRO A 254 -1 O VAL A 252 N GLY A 181 SHEET 5 AF 5 LEU A 151 TRP A 153 1 O ASN A 152 N ALA A 253 SHEET 1 AG 5 TYR A 100 ASP A 101 0 SHEET 2 AG 5 ARG A 229 VAL A 237 1 O ILE A 230 N ASP A 101 SHEET 3 AG 5 LYS A 176 HIS A 184 -1 O LYS A 176 N VAL A 237 SHEET 4 AG 5 GLY A 256 LYS A 259 -1 O GLY A 256 N ILE A 179 SHEET 5 AG 5 PHE A 120 ALA A 122 -1 O THR A 121 N TYR A 257 SHEET 1 AH 2 VAL A 130 THR A 131 0 SHEET 2 AH 2 THR A 155 LYS A 156 -1 O THR A 155 N THR A 131 SHEET 1 AI 2 SER A 136 ARG A 141 0 SHEET 2 AI 2 ALA A 144 SER A 146 1 O ALA A 144 N ARG A 141 SHEET 1 AJ 4 LEU A 164 PRO A 169 0 SHEET 2 AJ 4 ILE A 242 GLY A 249 -1 O LEU A 243 N MET A 168 SHEET 3 AJ 4 ARG A 201 SER A 205 -1 O ARG A 201 N ASN A 248 SHEET 4 AJ 4 GLN A 210 ILE A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 AK 4 GLY A 286 ILE A 288 0 SHEET 2 AK 4 CYS A 281 THR A 283 -1 O CYS A 281 N ILE A 288 SHEET 3 AK 4 TYR A 302 LYS A 304 -1 O TYR A 302 N ILE A 282 SHEET 4 AK 4 GLU B 61 LYS B 62 -1 O LYS B 62 N GLY A 303 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.05 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.05 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.05 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.04 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.06 LINK ND2 ASN A 22 C1 NAG A 601 1555 1555 1.46 LINK ND2 ASN A 38 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 63 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 285 C1 NAG F 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.45 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.20 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.44 LINK O2 MAN F 4 C1 BMA F 5 1555 1555 1.45 LINK O4 NGS G 1 C1 GAL G 2 1555 1555 1.45 LINK O3 GAL G 2 C2 SIA G 3 1555 1555 1.45 CRYST1 97.289 97.289 348.267 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010279 0.005934 0.000000 0.00000 SCALE2 0.000000 0.011869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002871 0.00000