data_4UYE # _entry.id 4UYE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4UYE PDBE EBI-61642 WWPDB D_1290061642 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UYD unspecified 'N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 1,3- DIMETHYL-2-OXO-2,3-DIHYDRO-1H-1,3-BENZODIAZOLE-5- CARBOXAMIDE' PDB 4UYF unspecified 'THE DISCOVERY OF I-BET726 (GSK1324726A), A POTENT TETRAHYDROQUINOLINE APOA1 UP-REGULATOR AND SELECTIVE BET BROMODOMAIN INHIBITOR' PDB 4UYG unspecified 'THE DISCOVERY OF I-BET726 (GSK1324726A), A POTENT TETRAHYDROQUINOLINE APOA1 UP-REGULATOR AND SELECTIVE BET BROMODOMAIN INHIBITOR' PDB 4UYH unspecified ;N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 1-((2R,4S )-2-METHYL-4-(PHENYLAMINO)-6-(4-(PIPERIDIN-1-YLMETHYL )PHENYL)-3,4-DIHYDROQUINOLIN-1(2H)-YL)ETHANONE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UYE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-08-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chung, C.' 1 'Bamborough, P.' 2 'Demont, E.' 3 # _citation.id primary _citation.title '1,3-Dimethyl Benzimidazolones are Potent, Selective Inhibitors of the Brpf1 Bromodomain.' _citation.journal_abbrev 'Acs Med.Chem.Lett.' _citation.journal_volume 5 _citation.page_first 1190 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1948-5875 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25408830 _citation.pdbx_database_id_DOI 10.1021/ML5002932 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Demont, E.H.' 1 primary 'Bamborough, P.' 2 primary 'Chung, C.W.' 3 primary 'Craggs, P.D.' 4 primary 'Fallon, D.' 5 primary 'Gordon, L.J.' 6 primary 'Grandi, P.' 7 primary 'Hobbs, C.I.' 8 primary 'Hussain, J.' 9 primary 'Jones, E.J.' 10 primary 'Le Gall, A.' 11 primary 'Michon, A.M.' 12 primary 'Mitchell, D.J.' 13 primary 'Prinjha, R.K.' 14 primary 'Roberts, A.D.' 15 primary 'Sheppard, R.J.' 16 primary 'Watson, R.J.' 17 # _cell.entry_id 4UYE _cell.length_a 89.060 _cell.length_b 68.120 _cell.length_c 58.750 _cell.angle_alpha 90.00 _cell.angle_beta 126.10 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UYE _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PEREGRIN 13925.918 2 ? ? 'BROMODOMAIN, UNP RESIDUES 622-738' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn 'N-[1,3-dimethyl-2-oxo-6-(piperidin-1-yl)-2,3-dihydro-1H-benzimidazol-5-yl]-2-methoxybenzamide' 394.467 2 ? ? ? ? 4 water nat water 18.015 240 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN BR140' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLI VSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLI VSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLN n 1 4 ILE n 1 5 ALA n 1 6 MET n 1 7 GLU n 1 8 MET n 1 9 GLN n 1 10 LEU n 1 11 THR n 1 12 PRO n 1 13 PHE n 1 14 LEU n 1 15 ILE n 1 16 LEU n 1 17 LEU n 1 18 ARG n 1 19 LYS n 1 20 THR n 1 21 LEU n 1 22 GLU n 1 23 GLN n 1 24 LEU n 1 25 GLN n 1 26 GLU n 1 27 LYS n 1 28 ASP n 1 29 THR n 1 30 GLY n 1 31 ASN n 1 32 ILE n 1 33 PHE n 1 34 SER n 1 35 GLU n 1 36 PRO n 1 37 VAL n 1 38 PRO n 1 39 LEU n 1 40 SER n 1 41 GLU n 1 42 VAL n 1 43 PRO n 1 44 ASP n 1 45 TYR n 1 46 LEU n 1 47 ASP n 1 48 HIS n 1 49 ILE n 1 50 LYS n 1 51 LYS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 PHE n 1 56 PHE n 1 57 THR n 1 58 MET n 1 59 LYS n 1 60 GLN n 1 61 ASN n 1 62 LEU n 1 63 GLU n 1 64 ALA n 1 65 TYR n 1 66 ARG n 1 67 TYR n 1 68 LEU n 1 69 ASN n 1 70 PHE n 1 71 ASP n 1 72 ASP n 1 73 PHE n 1 74 GLU n 1 75 GLU n 1 76 ASP n 1 77 PHE n 1 78 ASN n 1 79 LEU n 1 80 ILE n 1 81 VAL n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 LEU n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 ALA n 1 90 LYS n 1 91 ASP n 1 92 THR n 1 93 ILE n 1 94 PHE n 1 95 TYR n 1 96 ARG n 1 97 ALA n 1 98 ALA n 1 99 VAL n 1 100 ARG n 1 101 LEU n 1 102 ARG n 1 103 GLU n 1 104 GLN n 1 105 GLY n 1 106 GLY n 1 107 ALA n 1 108 VAL n 1 109 LEU n 1 110 ARG n 1 111 GLN n 1 112 ALA n 1 113 ARG n 1 114 ARG n 1 115 GLN n 1 116 ALA n 1 117 GLU n 1 118 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRPF1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P55201 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4UYE A 2 ? 118 ? P55201 622 ? 738 ? 622 738 2 1 4UYE B 2 ? 118 ? P55201 622 ? 738 ? 622 738 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4UYE GLY A 1 ? UNP P55201 ? ? 'expression tag' 621 1 2 4UYE GLY B 1 ? UNP P55201 ? ? 'expression tag' 621 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9F9 non-polymer . 'N-[1,3-dimethyl-2-oxo-6-(piperidin-1-yl)-2,3-dihydro-1H-benzimidazol-5-yl]-2-methoxybenzamide' ? 'C22 H26 N4 O3' 394.467 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4UYE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 54.42 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M MES/IMIDAZOLE PH 6.5, 10% MORPHEUS DIVALENTS MPD_P1K_P3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2014-05-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97625 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.97625 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4UYE _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.47 _reflns.d_resolution_high 1.65 _reflns.number_obs 32628 _reflns.number_all ? _reflns.percent_possible_obs 75.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all 94.6 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.00 _reflns_shell.pdbx_redundancy 3.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4UYE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 30953 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.47 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 95.35 _refine.ls_R_factor_obs 0.17693 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17569 _refine.ls_R_factor_R_free 0.20113 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1639 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 25.793 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.057 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.037 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1818 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 240 _refine_hist.number_atoms_total 2120 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 49.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.019 ? 1962 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1370 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.183 1.948 ? 2656 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.820 3.000 ? 3319 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.813 5.000 ? 225 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.370 24.340 ? 106 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.323 15.000 ? 347 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.519 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.068 0.200 ? 276 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 2171 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 417 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.650 _refine_ls_shell.d_res_low 1.693 _refine_ls_shell.number_reflns_R_work 2181 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs 93.46 _refine_ls_shell.R_factor_R_free 0.262 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 120 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4UYE _struct.title 'BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-dimethyl-2-oxo-6-(piperidin-1- yl)-2,3-dihydro-1H-1,3-benzodiazol-5-yl-2-methoxybenzamide' _struct.pdbx_descriptor PEREGRIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UYE _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, INHIBITOR, HISTONE, EPIGENETIC READER, ANTAGONIST' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 9 ? LYS A 27 ? GLN A 629 LYS A 647 1 ? 19 HELX_P HELX_P2 2 ASP A 44 ? ILE A 49 ? ASP A 664 ILE A 669 1 ? 6 HELX_P HELX_P3 3 ASP A 54 ? ALA A 64 ? ASP A 674 ALA A 684 1 ? 11 HELX_P HELX_P4 4 ASN A 69 ? ASN A 88 ? ASN A 689 ASN A 708 1 ? 20 HELX_P HELX_P5 5 THR A 92 ? GLU A 117 ? THR A 712 GLU A 737 1 ? 26 HELX_P HELX_P6 6 GLN B 9 ? LYS B 27 ? GLN B 629 LYS B 647 1 ? 19 HELX_P HELX_P7 7 ASP B 44 ? ILE B 49 ? ASP B 664 ILE B 669 1 ? 6 HELX_P HELX_P8 8 ASP B 54 ? ALA B 64 ? ASP B 674 ALA B 684 1 ? 11 HELX_P HELX_P9 9 ASN B 69 ? ASN B 88 ? ASN B 689 ASN B 708 1 ? 20 HELX_P HELX_P10 10 THR B 92 ? ALA B 116 ? THR B 712 ALA B 736 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 1738' AC2 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE 9F9 A 1739' AC3 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE 9F9 B 1738' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 78 ? ASN A 698 . ? 1_555 ? 2 AC1 5 SER A 82 ? SER A 702 . ? 1_555 ? 3 AC1 5 HOH F . ? HOH A 2079 . ? 1_555 ? 4 AC1 5 ARG B 102 ? ARG B 722 . ? 1_555 ? 5 AC1 5 GLU B 103 ? GLU B 723 . ? 1_555 ? 6 AC2 12 ILE A 15 ? ILE A 635 . ? 4_546 ? 7 AC2 12 ASN A 31 ? ASN A 651 . ? 1_555 ? 8 AC2 12 ILE A 32 ? ILE A 652 . ? 1_555 ? 9 AC2 12 GLU A 35 ? GLU A 655 . ? 1_555 ? 10 AC2 12 VAL A 37 ? VAL A 657 . ? 1_555 ? 11 AC2 12 PRO A 38 ? PRO A 658 . ? 1_555 ? 12 AC2 12 GLU A 41 ? GLU A 661 . ? 1_555 ? 13 AC2 12 ASN A 88 ? ASN A 708 . ? 1_555 ? 14 AC2 12 PHE A 94 ? PHE A 714 . ? 1_555 ? 15 AC2 12 GLN A 115 ? GLN A 735 . ? 4_546 ? 16 AC2 12 HOH F . ? HOH A 2048 . ? 1_555 ? 17 AC2 12 HOH F . ? HOH A 2131 . ? 1_555 ? 18 AC3 11 LYS B 19 ? LYS B 639 . ? 4_445 ? 19 AC3 11 ASN B 31 ? ASN B 651 . ? 1_555 ? 20 AC3 11 ILE B 32 ? ILE B 652 . ? 1_555 ? 21 AC3 11 GLU B 35 ? GLU B 655 . ? 1_555 ? 22 AC3 11 VAL B 37 ? VAL B 657 . ? 1_555 ? 23 AC3 11 PRO B 38 ? PRO B 658 . ? 1_555 ? 24 AC3 11 GLU B 41 ? GLU B 661 . ? 1_555 ? 25 AC3 11 ASN B 88 ? ASN B 708 . ? 1_555 ? 26 AC3 11 PHE B 94 ? PHE B 714 . ? 1_555 ? 27 AC3 11 HOH G . ? HOH B 2046 . ? 1_555 ? 28 AC3 11 HOH G . ? HOH B 2107 . ? 1_555 ? # _database_PDB_matrix.entry_id 4UYE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4UYE _atom_sites.fract_transf_matrix[1][1] 0.011228 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008188 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014680 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021066 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 621 ? ? ? A . n A 1 2 GLN 2 622 ? ? ? A . n A 1 3 GLN 3 623 ? ? ? A . n A 1 4 ILE 4 624 ? ? ? A . n A 1 5 ALA 5 625 ? ? ? A . n A 1 6 MET 6 626 ? ? ? A . n A 1 7 GLU 7 627 ? ? ? A . n A 1 8 MET 8 628 ? ? ? A . n A 1 9 GLN 9 629 629 GLN GLN A . n A 1 10 LEU 10 630 630 LEU LEU A . n A 1 11 THR 11 631 631 THR THR A . n A 1 12 PRO 12 632 632 PRO PRO A . n A 1 13 PHE 13 633 633 PHE PHE A . n A 1 14 LEU 14 634 634 LEU LEU A . n A 1 15 ILE 15 635 635 ILE ILE A . n A 1 16 LEU 16 636 636 LEU LEU A . n A 1 17 LEU 17 637 637 LEU LEU A . n A 1 18 ARG 18 638 638 ARG ARG A . n A 1 19 LYS 19 639 639 LYS LYS A . n A 1 20 THR 20 640 640 THR THR A . n A 1 21 LEU 21 641 641 LEU LEU A . n A 1 22 GLU 22 642 642 GLU GLU A . n A 1 23 GLN 23 643 643 GLN GLN A . n A 1 24 LEU 24 644 644 LEU LEU A . n A 1 25 GLN 25 645 645 GLN GLN A . n A 1 26 GLU 26 646 646 GLU GLU A . n A 1 27 LYS 27 647 647 LYS LYS A . n A 1 28 ASP 28 648 648 ASP ASP A . n A 1 29 THR 29 649 649 THR THR A . n A 1 30 GLY 30 650 650 GLY GLY A . n A 1 31 ASN 31 651 651 ASN ASN A . n A 1 32 ILE 32 652 652 ILE ILE A . n A 1 33 PHE 33 653 653 PHE PHE A . n A 1 34 SER 34 654 654 SER SER A . n A 1 35 GLU 35 655 655 GLU GLU A . n A 1 36 PRO 36 656 656 PRO PRO A . n A 1 37 VAL 37 657 657 VAL VAL A . n A 1 38 PRO 38 658 658 PRO PRO A . n A 1 39 LEU 39 659 659 LEU LEU A . n A 1 40 SER 40 660 660 SER SER A . n A 1 41 GLU 41 661 661 GLU GLU A . n A 1 42 VAL 42 662 662 VAL VAL A . n A 1 43 PRO 43 663 663 PRO PRO A . n A 1 44 ASP 44 664 664 ASP ASP A . n A 1 45 TYR 45 665 665 TYR TYR A . n A 1 46 LEU 46 666 666 LEU LEU A . n A 1 47 ASP 47 667 667 ASP ASP A . n A 1 48 HIS 48 668 668 HIS HIS A . n A 1 49 ILE 49 669 669 ILE ILE A . n A 1 50 LYS 50 670 670 LYS LYS A . n A 1 51 LYS 51 671 671 LYS LYS A . n A 1 52 PRO 52 672 672 PRO PRO A . n A 1 53 MET 53 673 673 MET MET A . n A 1 54 ASP 54 674 674 ASP ASP A . n A 1 55 PHE 55 675 675 PHE PHE A . n A 1 56 PHE 56 676 676 PHE PHE A . n A 1 57 THR 57 677 677 THR THR A . n A 1 58 MET 58 678 678 MET MET A . n A 1 59 LYS 59 679 679 LYS LYS A . n A 1 60 GLN 60 680 680 GLN GLN A . n A 1 61 ASN 61 681 681 ASN ASN A . n A 1 62 LEU 62 682 682 LEU LEU A . n A 1 63 GLU 63 683 683 GLU GLU A . n A 1 64 ALA 64 684 684 ALA ALA A . n A 1 65 TYR 65 685 685 TYR TYR A . n A 1 66 ARG 66 686 686 ARG ARG A . n A 1 67 TYR 67 687 687 TYR TYR A . n A 1 68 LEU 68 688 688 LEU LEU A . n A 1 69 ASN 69 689 689 ASN ASN A . n A 1 70 PHE 70 690 690 PHE PHE A . n A 1 71 ASP 71 691 691 ASP ASP A . n A 1 72 ASP 72 692 692 ASP ASP A . n A 1 73 PHE 73 693 693 PHE PHE A . n A 1 74 GLU 74 694 694 GLU GLU A . n A 1 75 GLU 75 695 695 GLU GLU A . n A 1 76 ASP 76 696 696 ASP ASP A . n A 1 77 PHE 77 697 697 PHE PHE A . n A 1 78 ASN 78 698 698 ASN ASN A . n A 1 79 LEU 79 699 699 LEU LEU A . n A 1 80 ILE 80 700 700 ILE ILE A . n A 1 81 VAL 81 701 701 VAL VAL A . n A 1 82 SER 82 702 702 SER SER A . n A 1 83 ASN 83 703 703 ASN ASN A . n A 1 84 CYS 84 704 704 CYS CYS A . n A 1 85 LEU 85 705 705 LEU LEU A . n A 1 86 LYS 86 706 706 LYS LYS A . n A 1 87 TYR 87 707 707 TYR TYR A . n A 1 88 ASN 88 708 708 ASN ASN A . n A 1 89 ALA 89 709 709 ALA ALA A . n A 1 90 LYS 90 710 710 LYS LYS A . n A 1 91 ASP 91 711 711 ASP ASP A . n A 1 92 THR 92 712 712 THR THR A . n A 1 93 ILE 93 713 713 ILE ILE A . n A 1 94 PHE 94 714 714 PHE PHE A . n A 1 95 TYR 95 715 715 TYR TYR A . n A 1 96 ARG 96 716 716 ARG ARG A . n A 1 97 ALA 97 717 717 ALA ALA A . n A 1 98 ALA 98 718 718 ALA ALA A . n A 1 99 VAL 99 719 719 VAL VAL A . n A 1 100 ARG 100 720 720 ARG ARG A . n A 1 101 LEU 101 721 721 LEU LEU A . n A 1 102 ARG 102 722 722 ARG ARG A . n A 1 103 GLU 103 723 723 GLU GLU A . n A 1 104 GLN 104 724 724 GLN GLN A . n A 1 105 GLY 105 725 725 GLY GLY A . n A 1 106 GLY 106 726 726 GLY GLY A . n A 1 107 ALA 107 727 727 ALA ALA A . n A 1 108 VAL 108 728 728 VAL VAL A . n A 1 109 LEU 109 729 729 LEU LEU A . n A 1 110 ARG 110 730 730 ARG ARG A . n A 1 111 GLN 111 731 731 GLN GLN A . n A 1 112 ALA 112 732 732 ALA ALA A . n A 1 113 ARG 113 733 733 ARG ARG A . n A 1 114 ARG 114 734 734 ARG ARG A . n A 1 115 GLN 115 735 735 GLN GLN A . n A 1 116 ALA 116 736 736 ALA ALA A . n A 1 117 GLU 117 737 737 GLU GLU A . n A 1 118 LYS 118 738 ? ? ? A . n B 1 1 GLY 1 621 ? ? ? B . n B 1 2 GLN 2 622 ? ? ? B . n B 1 3 GLN 3 623 ? ? ? B . n B 1 4 ILE 4 624 ? ? ? B . n B 1 5 ALA 5 625 ? ? ? B . n B 1 6 MET 6 626 ? ? ? B . n B 1 7 GLU 7 627 ? ? ? B . n B 1 8 MET 8 628 ? ? ? B . n B 1 9 GLN 9 629 629 GLN GLN B . n B 1 10 LEU 10 630 630 LEU LEU B . n B 1 11 THR 11 631 631 THR THR B . n B 1 12 PRO 12 632 632 PRO PRO B . n B 1 13 PHE 13 633 633 PHE PHE B . n B 1 14 LEU 14 634 634 LEU LEU B . n B 1 15 ILE 15 635 635 ILE ILE B . n B 1 16 LEU 16 636 636 LEU LEU B . n B 1 17 LEU 17 637 637 LEU LEU B . n B 1 18 ARG 18 638 638 ARG ARG B . n B 1 19 LYS 19 639 639 LYS LYS B . n B 1 20 THR 20 640 640 THR THR B . n B 1 21 LEU 21 641 641 LEU LEU B . n B 1 22 GLU 22 642 642 GLU GLU B . n B 1 23 GLN 23 643 643 GLN GLN B . n B 1 24 LEU 24 644 644 LEU LEU B . n B 1 25 GLN 25 645 645 GLN GLN B . n B 1 26 GLU 26 646 646 GLU GLU B . n B 1 27 LYS 27 647 647 LYS LYS B . n B 1 28 ASP 28 648 648 ASP ASP B . n B 1 29 THR 29 649 649 THR THR B . n B 1 30 GLY 30 650 650 GLY GLY B . n B 1 31 ASN 31 651 651 ASN ASN B . n B 1 32 ILE 32 652 652 ILE ILE B . n B 1 33 PHE 33 653 653 PHE PHE B . n B 1 34 SER 34 654 654 SER SER B . n B 1 35 GLU 35 655 655 GLU GLU B . n B 1 36 PRO 36 656 656 PRO PRO B . n B 1 37 VAL 37 657 657 VAL VAL B . n B 1 38 PRO 38 658 658 PRO PRO B . n B 1 39 LEU 39 659 659 LEU LEU B . n B 1 40 SER 40 660 660 SER SER B . n B 1 41 GLU 41 661 661 GLU GLU B . n B 1 42 VAL 42 662 662 VAL VAL B . n B 1 43 PRO 43 663 663 PRO PRO B . n B 1 44 ASP 44 664 664 ASP ASP B . n B 1 45 TYR 45 665 665 TYR TYR B . n B 1 46 LEU 46 666 666 LEU LEU B . n B 1 47 ASP 47 667 667 ASP ASP B . n B 1 48 HIS 48 668 668 HIS HIS B . n B 1 49 ILE 49 669 669 ILE ILE B . n B 1 50 LYS 50 670 670 LYS LYS B . n B 1 51 LYS 51 671 671 LYS LYS B . n B 1 52 PRO 52 672 672 PRO PRO B . n B 1 53 MET 53 673 673 MET MET B . n B 1 54 ASP 54 674 674 ASP ASP B . n B 1 55 PHE 55 675 675 PHE PHE B . n B 1 56 PHE 56 676 676 PHE PHE B . n B 1 57 THR 57 677 677 THR THR B . n B 1 58 MET 58 678 678 MET MET B . n B 1 59 LYS 59 679 679 LYS LYS B . n B 1 60 GLN 60 680 680 GLN GLN B . n B 1 61 ASN 61 681 681 ASN ASN B . n B 1 62 LEU 62 682 682 LEU LEU B . n B 1 63 GLU 63 683 683 GLU GLU B . n B 1 64 ALA 64 684 684 ALA ALA B . n B 1 65 TYR 65 685 685 TYR TYR B . n B 1 66 ARG 66 686 686 ARG ARG B . n B 1 67 TYR 67 687 687 TYR TYR B . n B 1 68 LEU 68 688 688 LEU LEU B . n B 1 69 ASN 69 689 689 ASN ASN B . n B 1 70 PHE 70 690 690 PHE PHE B . n B 1 71 ASP 71 691 691 ASP ASP B . n B 1 72 ASP 72 692 692 ASP ASP B . n B 1 73 PHE 73 693 693 PHE PHE B . n B 1 74 GLU 74 694 694 GLU GLU B . n B 1 75 GLU 75 695 695 GLU GLU B . n B 1 76 ASP 76 696 696 ASP ASP B . n B 1 77 PHE 77 697 697 PHE PHE B . n B 1 78 ASN 78 698 698 ASN ASN B . n B 1 79 LEU 79 699 699 LEU LEU B . n B 1 80 ILE 80 700 700 ILE ILE B . n B 1 81 VAL 81 701 701 VAL VAL B . n B 1 82 SER 82 702 702 SER SER B . n B 1 83 ASN 83 703 703 ASN ASN B . n B 1 84 CYS 84 704 704 CYS CYS B . n B 1 85 LEU 85 705 705 LEU LEU B . n B 1 86 LYS 86 706 706 LYS LYS B . n B 1 87 TYR 87 707 707 TYR TYR B . n B 1 88 ASN 88 708 708 ASN ASN B . n B 1 89 ALA 89 709 709 ALA ALA B . n B 1 90 LYS 90 710 710 LYS LYS B . n B 1 91 ASP 91 711 711 ASP ASP B . n B 1 92 THR 92 712 712 THR THR B . n B 1 93 ILE 93 713 713 ILE ILE B . n B 1 94 PHE 94 714 714 PHE PHE B . n B 1 95 TYR 95 715 715 TYR TYR B . n B 1 96 ARG 96 716 716 ARG ARG B . n B 1 97 ALA 97 717 717 ALA ALA B . n B 1 98 ALA 98 718 718 ALA ALA B . n B 1 99 VAL 99 719 719 VAL VAL B . n B 1 100 ARG 100 720 720 ARG ARG B . n B 1 101 LEU 101 721 721 LEU LEU B . n B 1 102 ARG 102 722 722 ARG ARG B . n B 1 103 GLU 103 723 723 GLU GLU B . n B 1 104 GLN 104 724 724 GLN GLN B . n B 1 105 GLY 105 725 725 GLY GLY B . n B 1 106 GLY 106 726 726 GLY GLY B . n B 1 107 ALA 107 727 727 ALA ALA B . n B 1 108 VAL 108 728 728 VAL VAL B . n B 1 109 LEU 109 729 729 LEU LEU B . n B 1 110 ARG 110 730 730 ARG ARG B . n B 1 111 GLN 111 731 731 GLN GLN B . n B 1 112 ALA 112 732 732 ALA ALA B . n B 1 113 ARG 113 733 733 ARG ARG B . n B 1 114 ARG 114 734 734 ARG ARG B . n B 1 115 GLN 115 735 735 GLN GLN B . n B 1 116 ALA 116 736 736 ALA ALA B . n B 1 117 GLU 117 737 737 GLU GLU B . n B 1 118 LYS 118 738 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 1738 1738 EDO EDO A . D 3 9F9 1 1739 1739 9F9 9F9 A . E 3 9F9 1 1738 1738 9F9 9F9 B . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . F 4 HOH 13 2013 2013 HOH HOH A . F 4 HOH 14 2014 2014 HOH HOH A . F 4 HOH 15 2015 2015 HOH HOH A . F 4 HOH 16 2016 2016 HOH HOH A . F 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 18 2018 2018 HOH HOH A . F 4 HOH 19 2019 2019 HOH HOH A . F 4 HOH 20 2020 2020 HOH HOH A . F 4 HOH 21 2021 2021 HOH HOH A . F 4 HOH 22 2022 2022 HOH HOH A . F 4 HOH 23 2023 2023 HOH HOH A . F 4 HOH 24 2024 2024 HOH HOH A . F 4 HOH 25 2025 2025 HOH HOH A . F 4 HOH 26 2026 2026 HOH HOH A . F 4 HOH 27 2027 2027 HOH HOH A . F 4 HOH 28 2028 2028 HOH HOH A . F 4 HOH 29 2029 2029 HOH HOH A . F 4 HOH 30 2030 2030 HOH HOH A . F 4 HOH 31 2031 2031 HOH HOH A . F 4 HOH 32 2032 2032 HOH HOH A . F 4 HOH 33 2033 2033 HOH HOH A . F 4 HOH 34 2034 2034 HOH HOH A . F 4 HOH 35 2035 2035 HOH HOH A . F 4 HOH 36 2036 2036 HOH HOH A . F 4 HOH 37 2037 2037 HOH HOH A . F 4 HOH 38 2038 2038 HOH HOH A . F 4 HOH 39 2039 2039 HOH HOH A . F 4 HOH 40 2040 2040 HOH HOH A . F 4 HOH 41 2041 2041 HOH HOH A . F 4 HOH 42 2042 2042 HOH HOH A . F 4 HOH 43 2043 2043 HOH HOH A . F 4 HOH 44 2044 2044 HOH HOH A . F 4 HOH 45 2045 2045 HOH HOH A . F 4 HOH 46 2046 2046 HOH HOH A . F 4 HOH 47 2047 2047 HOH HOH A . F 4 HOH 48 2048 2048 HOH HOH A . F 4 HOH 49 2049 2049 HOH HOH A . F 4 HOH 50 2050 2050 HOH HOH A . F 4 HOH 51 2051 2051 HOH HOH A . F 4 HOH 52 2052 2052 HOH HOH A . F 4 HOH 53 2053 2053 HOH HOH A . F 4 HOH 54 2054 2054 HOH HOH A . F 4 HOH 55 2055 2055 HOH HOH A . F 4 HOH 56 2056 2056 HOH HOH A . F 4 HOH 57 2057 2057 HOH HOH A . F 4 HOH 58 2058 2058 HOH HOH A . F 4 HOH 59 2059 2059 HOH HOH A . F 4 HOH 60 2060 2060 HOH HOH A . F 4 HOH 61 2061 2061 HOH HOH A . F 4 HOH 62 2062 2062 HOH HOH A . F 4 HOH 63 2063 2063 HOH HOH A . F 4 HOH 64 2064 2064 HOH HOH A . F 4 HOH 65 2065 2065 HOH HOH A . F 4 HOH 66 2066 2066 HOH HOH A . F 4 HOH 67 2067 2067 HOH HOH A . F 4 HOH 68 2068 2068 HOH HOH A . F 4 HOH 69 2069 2069 HOH HOH A . F 4 HOH 70 2070 2070 HOH HOH A . F 4 HOH 71 2071 2071 HOH HOH A . F 4 HOH 72 2072 2072 HOH HOH A . F 4 HOH 73 2073 2073 HOH HOH A . F 4 HOH 74 2074 2074 HOH HOH A . F 4 HOH 75 2075 2075 HOH HOH A . F 4 HOH 76 2076 2076 HOH HOH A . F 4 HOH 77 2077 2077 HOH HOH A . F 4 HOH 78 2078 2078 HOH HOH A . F 4 HOH 79 2079 2079 HOH HOH A . F 4 HOH 80 2080 2080 HOH HOH A . F 4 HOH 81 2081 2081 HOH HOH A . F 4 HOH 82 2082 2082 HOH HOH A . F 4 HOH 83 2083 2083 HOH HOH A . F 4 HOH 84 2084 2084 HOH HOH A . F 4 HOH 85 2085 2085 HOH HOH A . F 4 HOH 86 2086 2086 HOH HOH A . F 4 HOH 87 2087 2087 HOH HOH A . F 4 HOH 88 2088 2088 HOH HOH A . F 4 HOH 89 2089 2089 HOH HOH A . F 4 HOH 90 2090 2090 HOH HOH A . F 4 HOH 91 2091 2091 HOH HOH A . F 4 HOH 92 2092 2092 HOH HOH A . F 4 HOH 93 2093 2093 HOH HOH A . F 4 HOH 94 2094 2094 HOH HOH A . F 4 HOH 95 2095 2095 HOH HOH A . F 4 HOH 96 2096 2096 HOH HOH A . F 4 HOH 97 2097 2097 HOH HOH A . F 4 HOH 98 2098 2098 HOH HOH A . F 4 HOH 99 2099 2099 HOH HOH A . F 4 HOH 100 2100 2100 HOH HOH A . F 4 HOH 101 2101 2101 HOH HOH A . F 4 HOH 102 2102 2102 HOH HOH A . F 4 HOH 103 2103 2103 HOH HOH A . F 4 HOH 104 2104 2104 HOH HOH A . F 4 HOH 105 2105 2105 HOH HOH A . F 4 HOH 106 2106 2106 HOH HOH A . F 4 HOH 107 2107 2107 HOH HOH A . F 4 HOH 108 2108 2108 HOH HOH A . F 4 HOH 109 2109 2109 HOH HOH A . F 4 HOH 110 2110 2110 HOH HOH A . F 4 HOH 111 2111 2111 HOH HOH A . F 4 HOH 112 2112 2112 HOH HOH A . F 4 HOH 113 2113 2113 HOH HOH A . F 4 HOH 114 2114 2114 HOH HOH A . F 4 HOH 115 2115 2115 HOH HOH A . F 4 HOH 116 2116 2116 HOH HOH A . F 4 HOH 117 2117 2117 HOH HOH A . F 4 HOH 118 2118 2118 HOH HOH A . F 4 HOH 119 2119 2119 HOH HOH A . F 4 HOH 120 2120 2120 HOH HOH A . F 4 HOH 121 2121 2121 HOH HOH A . F 4 HOH 122 2122 2122 HOH HOH A . F 4 HOH 123 2123 2123 HOH HOH A . F 4 HOH 124 2124 2124 HOH HOH A . F 4 HOH 125 2125 2125 HOH HOH A . F 4 HOH 126 2126 2126 HOH HOH A . F 4 HOH 127 2127 2127 HOH HOH A . F 4 HOH 128 2128 2128 HOH HOH A . F 4 HOH 129 2129 2129 HOH HOH A . F 4 HOH 130 2130 2130 HOH HOH A . F 4 HOH 131 2131 2131 HOH HOH A . G 4 HOH 1 2001 2001 HOH HOH B . G 4 HOH 2 2002 2002 HOH HOH B . G 4 HOH 3 2003 2003 HOH HOH B . G 4 HOH 4 2004 2004 HOH HOH B . G 4 HOH 5 2005 2005 HOH HOH B . G 4 HOH 6 2006 2006 HOH HOH B . G 4 HOH 7 2007 2007 HOH HOH B . G 4 HOH 8 2008 2008 HOH HOH B . G 4 HOH 9 2009 2009 HOH HOH B . G 4 HOH 10 2010 2010 HOH HOH B . G 4 HOH 11 2011 2011 HOH HOH B . G 4 HOH 12 2012 2012 HOH HOH B . G 4 HOH 13 2013 2013 HOH HOH B . G 4 HOH 14 2014 2014 HOH HOH B . G 4 HOH 15 2015 2015 HOH HOH B . G 4 HOH 16 2016 2016 HOH HOH B . G 4 HOH 17 2017 2017 HOH HOH B . G 4 HOH 18 2018 2018 HOH HOH B . G 4 HOH 19 2019 2019 HOH HOH B . G 4 HOH 20 2020 2020 HOH HOH B . G 4 HOH 21 2021 2021 HOH HOH B . G 4 HOH 22 2022 2022 HOH HOH B . G 4 HOH 23 2023 2023 HOH HOH B . G 4 HOH 24 2024 2024 HOH HOH B . G 4 HOH 25 2025 2025 HOH HOH B . G 4 HOH 26 2026 2026 HOH HOH B . G 4 HOH 27 2027 2027 HOH HOH B . G 4 HOH 28 2028 2028 HOH HOH B . G 4 HOH 29 2029 2029 HOH HOH B . G 4 HOH 30 2030 2030 HOH HOH B . G 4 HOH 31 2031 2031 HOH HOH B . G 4 HOH 32 2032 2032 HOH HOH B . G 4 HOH 33 2033 2033 HOH HOH B . G 4 HOH 34 2034 2034 HOH HOH B . G 4 HOH 35 2035 2035 HOH HOH B . G 4 HOH 36 2036 2036 HOH HOH B . G 4 HOH 37 2037 2037 HOH HOH B . G 4 HOH 38 2038 2038 HOH HOH B . G 4 HOH 39 2039 2039 HOH HOH B . G 4 HOH 40 2040 2040 HOH HOH B . G 4 HOH 41 2041 2041 HOH HOH B . G 4 HOH 42 2042 2042 HOH HOH B . G 4 HOH 43 2043 2043 HOH HOH B . G 4 HOH 44 2044 2044 HOH HOH B . G 4 HOH 45 2045 2045 HOH HOH B . G 4 HOH 46 2046 2046 HOH HOH B . G 4 HOH 47 2047 2047 HOH HOH B . G 4 HOH 48 2048 2048 HOH HOH B . G 4 HOH 49 2049 2049 HOH HOH B . G 4 HOH 50 2050 2050 HOH HOH B . G 4 HOH 51 2051 2051 HOH HOH B . G 4 HOH 52 2052 2052 HOH HOH B . G 4 HOH 53 2053 2053 HOH HOH B . G 4 HOH 54 2054 2054 HOH HOH B . G 4 HOH 55 2055 2055 HOH HOH B . G 4 HOH 56 2056 2056 HOH HOH B . G 4 HOH 57 2057 2057 HOH HOH B . G 4 HOH 58 2058 2058 HOH HOH B . G 4 HOH 59 2059 2059 HOH HOH B . G 4 HOH 60 2060 2060 HOH HOH B . G 4 HOH 61 2061 2061 HOH HOH B . G 4 HOH 62 2062 2062 HOH HOH B . G 4 HOH 63 2063 2063 HOH HOH B . G 4 HOH 64 2064 2064 HOH HOH B . G 4 HOH 65 2065 2065 HOH HOH B . G 4 HOH 66 2066 2066 HOH HOH B . G 4 HOH 67 2067 2067 HOH HOH B . G 4 HOH 68 2068 2068 HOH HOH B . G 4 HOH 69 2069 2069 HOH HOH B . G 4 HOH 70 2070 2070 HOH HOH B . G 4 HOH 71 2071 2071 HOH HOH B . G 4 HOH 72 2072 2072 HOH HOH B . G 4 HOH 73 2073 2073 HOH HOH B . G 4 HOH 74 2074 2074 HOH HOH B . G 4 HOH 75 2075 2075 HOH HOH B . G 4 HOH 76 2076 2076 HOH HOH B . G 4 HOH 77 2077 2077 HOH HOH B . G 4 HOH 78 2078 2078 HOH HOH B . G 4 HOH 79 2079 2079 HOH HOH B . G 4 HOH 80 2080 2080 HOH HOH B . G 4 HOH 81 2081 2081 HOH HOH B . G 4 HOH 82 2082 2082 HOH HOH B . G 4 HOH 83 2083 2083 HOH HOH B . G 4 HOH 84 2084 2084 HOH HOH B . G 4 HOH 85 2085 2085 HOH HOH B . G 4 HOH 86 2086 2086 HOH HOH B . G 4 HOH 87 2087 2087 HOH HOH B . G 4 HOH 88 2088 2088 HOH HOH B . G 4 HOH 89 2089 2089 HOH HOH B . G 4 HOH 90 2090 2090 HOH HOH B . G 4 HOH 91 2091 2091 HOH HOH B . G 4 HOH 92 2092 2092 HOH HOH B . G 4 HOH 93 2093 2093 HOH HOH B . G 4 HOH 94 2094 2094 HOH HOH B . G 4 HOH 95 2095 2095 HOH HOH B . G 4 HOH 96 2096 2096 HOH HOH B . G 4 HOH 97 2097 2097 HOH HOH B . G 4 HOH 98 2098 2098 HOH HOH B . G 4 HOH 99 2099 2099 HOH HOH B . G 4 HOH 100 2100 2100 HOH HOH B . G 4 HOH 101 2101 2101 HOH HOH B . G 4 HOH 102 2102 2102 HOH HOH B . G 4 HOH 103 2103 2103 HOH HOH B . G 4 HOH 104 2104 2104 HOH HOH B . G 4 HOH 105 2105 2105 HOH HOH B . G 4 HOH 106 2106 2106 HOH HOH B . G 4 HOH 107 2107 2107 HOH HOH B . G 4 HOH 108 2108 2108 HOH HOH B . G 4 HOH 109 2109 2109 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,F 2 1 B,E,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-17 2 'Structure model' 1 1 2014-12-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 1.4942 58.4618 16.6999 0.1054 0.0423 0.2696 -0.0256 -0.0036 0.0058 0.5890 1.5553 0.2855 0.0678 0.3795 0.2213 -0.0459 -0.0101 -0.0831 -0.0822 0.0941 0.0736 -0.0641 0.0310 -0.0481 'X-RAY DIFFRACTION' 2 ? refined -19.0364 59.7956 6.7571 0.1314 0.0360 0.2442 0.0025 -0.0045 -0.0041 0.1407 1.6308 0.3173 0.1398 0.1622 -0.1228 -0.0415 -0.0108 -0.0445 0.0294 0.0444 -0.0957 -0.0533 -0.0717 -0.0029 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 629 ? ? A 737 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 629 ? ? B 737 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2020 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2101 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.01 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 2008 ? 7.11 . 2 1 O ? B HOH 2089 ? 6.35 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 621 ? A GLY 1 2 1 Y 1 A GLN 622 ? A GLN 2 3 1 Y 1 A GLN 623 ? A GLN 3 4 1 Y 1 A ILE 624 ? A ILE 4 5 1 Y 1 A ALA 625 ? A ALA 5 6 1 Y 1 A MET 626 ? A MET 6 7 1 Y 1 A GLU 627 ? A GLU 7 8 1 Y 1 A MET 628 ? A MET 8 9 1 Y 1 A LYS 738 ? A LYS 118 10 1 Y 1 B GLY 621 ? B GLY 1 11 1 Y 1 B GLN 622 ? B GLN 2 12 1 Y 1 B GLN 623 ? B GLN 3 13 1 Y 1 B ILE 624 ? B ILE 4 14 1 Y 1 B ALA 625 ? B ALA 5 15 1 Y 1 B MET 626 ? B MET 6 16 1 Y 1 B GLU 627 ? B GLU 7 17 1 Y 1 B MET 628 ? B MET 8 18 1 Y 1 B LYS 738 ? B LYS 118 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'N-[1,3-dimethyl-2-oxo-6-(piperidin-1-yl)-2,3-dihydro-1H-benzimidazol-5-yl]-2-methoxybenzamide' 9F9 4 water HOH #